HHsearch alignment for GI: 254781024 and conserved domain: TIGR01320
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase; InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase . ; GO: 0008924 malate dehydrogenase (acceptor) activity, 0006099 tricarboxylic acid cycle.
Probab=97.03 E-value=0.031 Score=34.43 Aligned_cols=168 Identities=18% Similarity=0.202 Sum_probs=96.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC----CEECHHHHHHH--CC-----------------
Q ss_conf 47799989768999999999808997399997867789864027----40333678886--78-----------------
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSG----AIIDPIGIDSL--LP----------------- 71 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG----~vl~p~aL~eL--~P----------------- 71 (554)
T Consensus 1 ~DvvLvGAGIMSATLGvLLk~LeP~w~~~l~Erld~~A~E-SS~pWNNAGTGHSALCELNYtP~~~dG~idi~kAv~ine 79 (487)
T TIGR01320 1 TDVVLVGAGIMSATLGVLLKELEPSWEITLIERLDAVALE-SSNPWNNAGTGHSALCELNYTPEVADGSIDIAKAVGINE 79 (487)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC-CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHCCCCC
T ss_conf 9678865616689999999730999538999860774546-676600112013687642247887678265355622011
Q ss_pred -------------------CHHHHCCCCCCCEEEEEE-------EEEE-------CCCCCE--------------ECCCC
Q ss_conf -------------------726414885432243669-------9997-------799767--------------73654
Q gi|254781024|r 72 -------------------RWREDKGHPFHTVVKRDL-------YWFL-------NAQRSI--------------QIPHF 104 (554)
Q Consensus 72 -------------------d~~e~~g~pl~~~v~~d~-------~~~l-------~~~~~~--------------~~p~~ 104 (554)
T Consensus 80 ~F~VsrQFWa~lv~~G~L~dp~~Fi-----NpVPH~Sfv~G~~~v~YLk~Ry~AL~~~~lF~~m~y~~d~~~~a~~lPLM 154 (487)
T TIGR01320 80 QFQVSRQFWAHLVEEGVLEDPKSFI-----NPVPHVSFVRGSDGVAYLKKRYEALKKHPLFEGMEYSEDKATFAEWLPLM 154 (487)
T ss_pred CCEECHHHHHHHHHCCCCCCCCCCC-----CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHCCCC
T ss_conf 4113188898998367246854022-----78885202657066799999999861784313750005868998742545
Q ss_pred CCCCCCC-------CCCCEEEEHHHHHHHHHHHHHHC-CCEECCCCEEEEEEECC-CCCEEEEEECCC-CCCCCCCCCCC
Q ss_conf 3565446-------78826888889899999999874-95330682243477627-762014541243-24434665787
Q gi|254781024|r 105 CLPDFMD-------NKEHYIVSLGQVCRWLKNKAEAL-GVEIYCGFTATEIYYGK-KGEALGILTGEK-GKNYDGTQGKH 174 (554)
Q Consensus 105 ~~p~~~~-------~~g~yiv~r~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~e-~g~vvgv~t~~~-G~~k~~~~~~~ 174 (554)
T Consensus 155 ~~gR~~~~pvA~~~~~~GTDvdFGalt~Ql~~~~~~~PG~~~~yg~~V~~l~r~sD~~W~vt~~d~r~PG~~~------- 227 (487)
T TIGR01320 155 AKGRDFSEPVAANWVAEGTDVDFGALTKQLLKYLEQEPGTKIRYGHEVKDLKRESDGAWVVTVKDTRTPGGKR------- 227 (487)
T ss_pred CCCCCCCCHHHHHHHCCCCEECHHHHHHHHHHHHHCCCCCEEECCCCEEHHHHCCCCCCEEEECCCCCCCCCE-------
T ss_conf 6876886343321204784002778999999997028981676385000110105885378841220888762-------
Q ss_pred CCCEEEEEEEEE-EEECCCCCHHHHHH
Q ss_conf 563026774257-86066443255421
Q gi|254781024|r 175 YIAPMLLLSKYM-LVGEGACGSLTRQL 200 (554)
Q Consensus 175 ~~~g~~i~Ak~v-I~AdG~~s~lak~l 200 (554)
T Consensus 228 -----~l~a~FvFlGAGG~AL~lLq~S 249 (487)
T TIGR01320 228 -----TLKARFVFLGAGGGALPLLQKS 249 (487)
T ss_pred -----EEEEEEEEEECCCCHHHHHHHC
T ss_conf -----6766778971574168898866