HHsearch alignment for GI: 254781024 and conserved domain: TIGR01350
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=97.16 E-value=0.012 Score=37.20 Aligned_cols=104 Identities=23% Similarity=0.291 Sum_probs=77.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEEECC
Q ss_conf 77999897689999999998089973999978677898640274033367888678726414885432243669999779
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFLNA 95 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~l~~ 95 (554)
T Consensus 180 slvIiGGGVIG~EfA~~f~~lG--~~VTv~E~~d------------------rILp~~D--------------------- 218 (481)
T TIGR01350 180 SLVIIGGGVIGVEFASIFASLG--VKVTVIEMLD------------------RILPGED--------------------- 218 (481)
T ss_pred EEEEECCCHHHHHHHHHHHHCC--CEEEEEECCC------------------CCCCCCC---------------------
T ss_conf 6699878667788999998539--8089994575------------------0035431---------------------
Q ss_pred CCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCC-CEECCCCEEE--EEEECCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 9767736543565446788268888898999999998749-5330682243--477627762014541243244346657
Q gi|254781024|r 96 QRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALG-VEIYCGFTAT--EIYYGKKGEALGILTGEKGKNYDGTQG 172 (554)
Q Consensus 96 ~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~G-vei~~g~~v~--~i~~~e~g~vvgv~t~~~G~~k~~~~~ 172 (554)
T Consensus 219 -------------------------~evSk~~~~~L~~~GNv~i~~~~~V~~~~~~~~~~~v~~~~~~~g~g-------- 265 (481)
T TIGR01350 219 -------------------------AEVSKVVKKKLKKKGNVKILTNAKVTGAAVEKNDDQVVVEVELEGKG-------- 265 (481)
T ss_pred -------------------------HHHHHHHHHHHHHCCCEEEECCCEEECCEEEECCCEEEEEEEECCCC--------
T ss_conf -------------------------68999999999744984985485442335775287899999987998--------
Q ss_pred CCCCCEEEEEEEEEEEECCCCCHHH
Q ss_conf 8756302677425786066443255
Q gi|254781024|r 173 KHYIAPMLLLSKYMLVGEGACGSLT 197 (554)
Q Consensus 173 ~~~~~g~~i~Ak~vI~AdG~~s~la 197 (554)
T Consensus 266 ----e~~~~~~e~vLvavGR~pn~~ 286 (481)
T TIGR01350 266 ----EVETLTAEKVLVAVGRKPNTE 286 (481)
T ss_pred ----CEEEEEEEEEEEEECCCCCCC
T ss_conf ----058898739999842434767