HHsearch alignment for GI: 254781024 and conserved domain: TIGR01811

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR011280 This entry represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes..
Probab=98.32  E-value=1.8e-05  Score=56.87  Aligned_cols=151  Identities=18%  Similarity=0.176  Sum_probs=88.6

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC-CCCCCCC--CEECHH-------HHHHHCC---------------
Q ss_conf             79998976899999999980899739999786778-9864027--403336-------7888678---------------
Q gi|254781024|r   17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEV-GAHILSG--AIIDPI-------GIDSLLP---------------   71 (554)
Q Consensus        17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~p-G~~i~sG--~vl~p~-------aL~eL~P---------------   71 (554)
T Consensus         1 viVVGtGLaG~~A~~~lae~G~--~V~~F~~~d~prRaHSiaAQGGiN~A~n~k~dgD~~~~~f~DTvkGGDfr~res~v   78 (620)
T TIGR01811         1 VIVVGTGLAGGSAAAKLAELGY--HVKLFSYQDAPRRAHSIAAQGGINAAKNTKNDGDSVWRHFDDTVKGGDFRSRESNV   78 (620)
T ss_pred             CEEECCCHHHHHHHHHHHHCCC--CEEEEEECCCCCCCEEHCCCCCCCCCCCCCCCCCCCEEEECCCEECCCCCCCCCHH
T ss_conf             9685565347899999986488--51254405887620000002662002565678884166531403235336777527


Q ss_pred             -----------CHHHHCCCCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEH-------------HHHHHHH
Q ss_conf             -----------7264148854322436699997799767736543565446788268888-------------8989999
Q gi|254781024|r   72 -----------RWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSL-------------GQVCRWL  127 (554)
Q Consensus        72 -----------d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r-------------~~fd~~L  127 (554)
T Consensus        79 ~rla~~s~~iId~~~a~GvpFaRe~----------gGlLd---------~RsFGG~qvsRT~Yarg~TGQQLl~~~~~a~  139 (620)
T TIGR01811        79 KRLAEISPEIIDLMDAMGVPFAREY----------GGLLD---------TRSFGGVQVSRTFYARGQTGQQLLLAADSAL  139 (620)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCC----------CCCCC---------CCCCCCEEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf             8998730899999864588434554----------66300---------1346860001213417762789999999999


Q ss_pred             HHHHHHCCCEECCCCEEEEEEECCCC---CEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHH
Q ss_conf             99998749533068224347762776---201454124324434665787563026774257860664432554
Q gi|254781024|r  128 KNKAEALGVEIYCGFTATEIYYGKKG---EALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTR  198 (554)
Q Consensus       128 ~~~Ae~~Gvei~~g~~v~~i~~~e~g---~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak  198 (554)
T Consensus       140 ~r~~~~G~v~~y~~~e~ld~iv~d~~gek~arGi~arnL~T-------ge---~~~~~adAVilAtGGyg~vF~  203 (620)
T TIGR01811       140 RRQIAAGTVEKYERWEMLDIIVVDGDGEKRARGIIARNLVT-------GE---IETFSADAVILATGGYGNVFY  203 (620)
T ss_pred             HHHHHCCCEEEEECCEEEEEEEECCCCCCEEEEEEECCCCC-------CH---HHCCCCCEEEEECCCCHHHHH
T ss_conf             88886273566416516889887588750220012102400-------00---000035668981288602222