HHsearch alignment for GI: 254781024 and conserved domain: TIGR01811
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR011280 This entry represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes..
Probab=98.32 E-value=1.8e-05 Score=56.87 Aligned_cols=151 Identities=18% Similarity=0.176 Sum_probs=88.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC-CCCCCCC--CEECHH-------HHHHHCC---------------
Q ss_conf 79998976899999999980899739999786778-9864027--403336-------7888678---------------
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEV-GAHILSG--AIIDPI-------GIDSLLP--------------- 71 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~p-G~~i~sG--~vl~p~-------aL~eL~P--------------- 71 (554)
T Consensus 1 viVVGtGLaG~~A~~~lae~G~--~V~~F~~~d~prRaHSiaAQGGiN~A~n~k~dgD~~~~~f~DTvkGGDfr~res~v 78 (620)
T TIGR01811 1 VIVVGTGLAGGSAAAKLAELGY--HVKLFSYQDAPRRAHSIAAQGGINAAKNTKNDGDSVWRHFDDTVKGGDFRSRESNV 78 (620)
T ss_pred CEEECCCHHHHHHHHHHHHCCC--CEEEEEECCCCCCCEEHCCCCCCCCCCCCCCCCCCCEEEECCCEECCCCCCCCCHH
T ss_conf 9685565347899999986488--51254405887620000002662002565678884166531403235336777527
Q ss_pred -----------CHHHHCCCCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEH-------------HHHHHHH
Q ss_conf -----------7264148854322436699997799767736543565446788268888-------------8989999
Q gi|254781024|r 72 -----------RWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSL-------------GQVCRWL 127 (554)
Q Consensus 72 -----------d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r-------------~~fd~~L 127 (554)
T Consensus 79 ~rla~~s~~iId~~~a~GvpFaRe~----------gGlLd---------~RsFGG~qvsRT~Yarg~TGQQLl~~~~~a~ 139 (620)
T TIGR01811 79 KRLAEISPEIIDLMDAMGVPFAREY----------GGLLD---------TRSFGGVQVSRTFYARGQTGQQLLLAADSAL 139 (620)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCC----------CCCCC---------CCCCCCEEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 8998730899999864588434554----------66300---------1346860001213417762789999999999
Q ss_pred HHHHHHCCCEECCCCEEEEEEECCCC---CEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHH
Q ss_conf 99998749533068224347762776---201454124324434665787563026774257860664432554
Q gi|254781024|r 128 KNKAEALGVEIYCGFTATEIYYGKKG---EALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTR 198 (554)
Q Consensus 128 ~~~Ae~~Gvei~~g~~v~~i~~~e~g---~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak 198 (554)
T Consensus 140 ~r~~~~G~v~~y~~~e~ld~iv~d~~gek~arGi~arnL~T-------ge---~~~~~adAVilAtGGyg~vF~ 203 (620)
T TIGR01811 140 RRQIAAGTVEKYERWEMLDIIVVDGDGEKRARGIIARNLVT-------GE---IETFSADAVILATGGYGNVFY 203 (620)
T ss_pred HHHHHCCCEEEEECCEEEEEEEECCCCCCEEEEEEECCCCC-------CH---HHCCCCCEEEEECCCCHHHHH
T ss_conf 88886273566416516889887588750220012102400-------00---000035668981288602222