HHsearch alignment for GI: 254781024 and conserved domain: TIGR02730
>TIGR02730 carot_isom carotene isomerase; InterPro: IPR014101 Members of this family, including sll0033 (crtH) of Synechocystis sp. (strain PCC 6803), catalyse a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization..
Probab=98.19 E-value=5.2e-05 Score=53.71 Aligned_cols=213 Identities=20% Similarity=0.284 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECC--------
Q ss_conf 889899999999874953306822434776277620145412432443466578756302677425786066--------
Q gi|254781024|r 120 LGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEG-------- 191 (554)
Q Consensus 120 r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG-------- 191 (554)
T Consensus 228 VG~IA~~Lv~GLe~~Gg~I~Y~A~Vt~ii~-e~~~AvGV~L~~---------------G~~~~~k~ivSNATRWDTF~g~ 291 (506)
T TIGR02730 228 VGQIAEKLVKGLEKHGGKIRYKARVTKIIL-ENGKAVGVKLAD---------------GEKIYAKRIVSNATRWDTFGGQ 291 (506)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEEEEEE-CCCCEEEEEECC---------------CCEEECCEEEECCCCCCCCCCC
T ss_conf 548999999888741640563002455452-088455568648---------------8365211676316423456776
Q ss_pred --CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH----------CCCCCCCCEEE-EEE---CCCCCCCCCCCEEEE-
Q ss_conf --4432554211224899888898998898888751----------65667888089-950---434768766412576-
Q gi|254781024|r 192 --ACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKI----------KPQYHRRGLAL-HSI---GWPLDMNTSGGGFVY- 254 (554)
Q Consensus 192 --~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei----------~~~~~~~G~~~-h~~---g~~~~~~~~gggwiy- 254 (554)
T Consensus 292 ~~g~~~~g~~L~~~~~~P~-----~E~~w~~~Y~~sPSFLSlHlGV~~d~lP~gT~CHH~~LEDdW~~l~~~~G~iFvSi 366 (506)
T TIGR02730 292 DDGSTRAGQKLLKEENLPK-----KEKKWRRNYVKSPSFLSLHLGVKADVLPEGTECHHILLEDDWDNLEKEQGTIFVSI 366 (506)
T ss_pred CCCHHHHHHHHHCCCCCCH-----HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCHHHCCCCCCEEEEEC
T ss_conf 4311356676420025863-----47899985137886033000420014788896137885267020067886699972
Q ss_pred -EC-CCCEEEEEE-EE---------------CCCCCC-CCCCHHHHHHHHHH--CCCHHHHHC---CCCEE---CC----
Q ss_conf -64-798059999-83---------------266656-68898899999860--800456503---88263---03----
Q gi|254781024|r 255 -HF-DDNLVSIGF-VL---------------HLDYRN-PWISAYEELQRFKT--HPDIRIIFT---EGERL---EY---- 303 (554)
Q Consensus 255 -~~-~d~~~~iG~-v~---------------~ld~~~-~~~~~~~~lq~fk~--hp~i~~~l~---gg~~~---~y---- 303 (554)
T Consensus 367 PtlLDp~LAP~G~HI~H~FTps~~e~W~gLSp~dY~AKKE~~a~r~I~RLE~~ifPGL~~~~~~~EvGTPr~HRRfLgR~ 446 (506)
T TIGR02730 367 PTLLDPSLAPEGYHIIHTFTPSSLEDWQGLSPKDYEAKKEADAERLIDRLEKTIFPGLDEALDYKEVGTPRTHRRFLGRE 446 (506)
T ss_pred CCCCCCCCCCCCCEEEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHCCCC
T ss_conf 22027302779847998506202655317884243323177899999987664065602415433247886202212568
Q ss_pred --CCEECCCCCC---CCCC--CCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf --5134005421---2487--42308879961232331366435226899999999999999
Q gi|254781024|r 304 --GARVISEGGW---QSVP--KLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVE 358 (554)
Q Consensus 304 --ga~~ip~gg~---~s~p--k~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~e 358 (554)
T Consensus 447 ~GtYGPiPr~~l~GLL~MPFN~Tai~gLYCVGDS~-F----PGQGl~AVAFSG~~CAHR~a~ 503 (506)
T TIGR02730 447 SGTYGPIPRRKLKGLLPMPFNRTAIPGLYCVGDSC-F----PGQGLNAVAFSGFACAHRVAA 503 (506)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC-C----CCCCHHHHHHHHHHHHHHHHH
T ss_conf 78858888777887765885100357615504657-8----875336766621455565541