HHsearch alignment for GI: 254781024 and conserved domain: TIGR03048
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=96.34 E-value=0.0025 Score=42.05 Aligned_cols=54 Identities=20% Similarity=0.383 Sum_probs=42.4
Q ss_pred CHHHCCCCCEEEEEEECCCCEEE----EEECCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 81321358600688965997056----6515666704757300688886253679888
Q gi|254781024|r 494 GPSMRYCPAGVYEWHQNNDENNY----IIHAQNCIHCKACVIKDPNQNIEWNPPQGGD 547 (554)
Q Consensus 494 ~p~~~~cpa~vye~~~~~~~~~~----~i~~~nc~hcktc~ik~p~~~i~w~~p~gg~ 547 (554)
T Consensus 14 ~~CvrvCPt~vieMVp~dg~~~~q~~~~~RtedCIGC~~CE~aCPtdaLsir~y~g~e 71 (80)
T TIGR03048 14 TQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGAE 71 (80)
T ss_pred HHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEECCCC
T ss_conf 4668658845145224666544645578861005562134430898731358841752