HHsearch alignment for GI: 254781024 and conserved domain: TIGR03197
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.60 E-value=2.7e-05 Score=55.73 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=45.8
Q ss_pred EEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHH
Q ss_conf 88888989999999987495330682243477627762014541243244346657875630267742578606644325
Q gi|254781024|r 117 IVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSL 196 (554)
Q Consensus 117 iv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~l 196 (554)
T Consensus 131 ~v~p~~~~~al~~~a~-~g~~~~~~~~V~~i~~~g~~--~~v~~~~---------------g~~~~ad~vV~AaG~~s~~ 192 (381)
T TIGR03197 131 WLSPPQLCRALLAHAG-IRLTLHFNTEITSLERDGEG--WQLLDAN---------------GEVIAASVVVLANGAQAGQ 192 (381)
T ss_pred EECHHHHHHHHHHHHH-HCCEEEECCEEEEEEEECCE--EEEEECC---------------CCEEECCEEEECCCCCHHH
T ss_conf 5478999999999997-29789936258999995998--9999899---------------9889735589855420355