Query gi|254781024|ref|YP_003065437.1| electron transfer flavoprotein-ubiquinone oxidoreductase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 554
No_of_seqs 243 out of 1203
Neff 7.0
Searched_HMMs 39220
Date Mon May 30 06:12:28 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781024.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2415 consensus 100.0 0 0 1310.8 37.6 544 4-554 66-621 (621)
2 PRK10015 hypothetical protein; 100.0 0 0 692.7 36.1 377 14-418 5-393 (429)
3 PRK10157 putative oxidoreducta 100.0 0 0 656.2 32.7 390 14-432 5-408 (428)
4 COG0644 FixC Dehydrogenases (f 100.0 0 0 520.1 29.8 394 12-468 1-396 (396)
5 TIGR02032 GG-red-SF geranylger 100.0 0 0 375.5 21.9 322 15-356 1-343 (343)
6 TIGR02023 BchP-ChlP geranylger 100.0 0 0 378.2 19.1 325 15-380 1-341 (408)
7 PRK11445 putative oxidoreducta 100.0 7E-44 0 323.9 26.8 308 14-377 1-314 (348)
8 pfam05187 ETF_QO Electron tran 100.0 1.9E-42 0 313.9 8.4 110 399-511 1-110 (110)
9 TIGR02028 ChlP geranylgeranyl 100.0 3.9E-37 9.8E-42 277.0 20.3 322 17-380 3-334 (401)
10 PRK06185 hypothetical protein; 100.0 2.7E-27 7E-32 208.6 26.6 325 14-377 6-340 (409)
11 pfam01494 FAD_binding_3 FAD bi 100.0 1.2E-27 3.2E-32 210.9 24.8 330 14-378 1-340 (349)
12 COG0654 UbiH 2-polyprenyl-6-me 100.0 4E-26 1E-30 200.5 31.0 346 13-401 1-356 (387)
13 PRK07045 putative monooxygenas 100.0 6.1E-25 1.6E-29 192.2 32.5 342 14-399 5-362 (388)
14 PRK07364 2-octaprenyl-6-methox 100.0 2.4E-25 6.1E-30 195.1 29.4 326 12-379 15-353 (413)
15 PRK09126 hypothetical protein; 100.0 3.2E-25 8E-30 194.2 28.8 341 13-396 2-356 (392)
16 PRK07608 hypothetical protein; 100.0 6.1E-25 1.6E-29 192.2 27.8 342 12-397 3-357 (389)
17 PRK08773 2-octaprenyl-3-methyl 100.0 1.5E-24 3.9E-29 189.5 29.8 324 14-377 6-340 (392)
18 PRK08163 salicylate hydroxylas 100.0 8.3E-25 2.1E-29 191.3 27.7 338 14-397 4-358 (396)
19 PRK06183 mhpA 3-(3-hydroxyphen 100.0 4.6E-25 1.2E-29 193.1 25.5 332 11-386 8-350 (554)
20 PRK07588 hypothetical protein; 100.0 2E-24 5.1E-29 188.7 27.9 340 17-407 3-360 (391)
21 PRK07333 2-octaprenyl-6-methox 99.9 3.5E-24 8.9E-29 187.0 28.5 344 14-395 1-355 (403)
22 PRK06475 salicylate hydroxylas 99.9 2.4E-24 6.2E-29 188.0 26.7 343 15-399 3-364 (400)
23 PRK06847 hypothetical protein; 99.9 4.3E-24 1.1E-28 186.3 27.0 331 16-396 6-352 (375)
24 PRK05732 2-octaprenyl-6-methox 99.9 6.1E-24 1.6E-28 185.3 27.6 323 14-378 3-341 (395)
25 PRK06126 hypothetical protein; 99.9 3E-24 7.6E-29 187.4 25.0 329 14-378 7-359 (545)
26 PRK06184 hypothetical protein; 99.9 1.2E-23 3E-28 183.3 27.5 334 11-385 3-345 (503)
27 PRK08013 hypothetical protein; 99.9 4.4E-23 1.1E-27 179.3 30.4 340 14-397 3-359 (400)
28 PRK08244 hypothetical protein; 99.9 1.3E-24 3.3E-29 189.9 21.6 325 13-384 1-332 (494)
29 PRK05714 2-octaprenyl-3-methyl 99.9 1.6E-23 4E-28 182.4 26.8 324 13-377 1-343 (405)
30 PRK08020 ubiF 2-octaprenyl-3-m 99.9 8.2E-24 2.1E-28 184.4 25.3 320 14-378 5-340 (391)
31 PRK07494 2-octaprenyl-6-methox 99.9 5.8E-24 1.5E-28 185.4 24.0 321 14-378 5-334 (386)
32 PRK07538 hypothetical protein; 99.9 7.1E-24 1.8E-28 184.8 23.8 322 16-378 2-350 (413)
33 PRK06753 hypothetical protein; 99.9 2.9E-23 7.5E-28 180.5 26.1 327 17-397 3-340 (373)
34 PRK08132 hypothetical protein; 99.9 2.3E-23 5.9E-28 181.2 25.2 327 11-378 20-355 (549)
35 PRK07190 hypothetical protein; 99.9 1E-22 2.6E-27 176.8 27.4 318 14-386 5-337 (480)
36 PRK06834 hypothetical protein; 99.9 1.9E-22 4.8E-27 174.9 28.4 320 14-384 3-325 (488)
37 PRK05868 hypothetical protein; 99.9 6.3E-23 1.6E-27 178.2 25.8 316 17-378 4-336 (372)
38 PRK08948 consensus 99.9 1.1E-22 2.8E-27 176.6 26.5 324 15-378 1-338 (392)
39 PRK08243 4-hydroxybenzoate 3-m 99.9 3.3E-22 8.5E-27 173.2 27.3 326 13-380 1-337 (392)
40 PRK08850 2-octaprenyl-6-methox 99.9 5.9E-22 1.5E-26 171.5 26.8 325 14-378 4-341 (405)
41 PRK08849 2-octaprenyl-3-methyl 99.9 7.1E-23 1.8E-27 177.9 21.6 317 14-378 3-333 (384)
42 TIGR03219 salicylate_mono sali 99.9 3.2E-22 8.1E-27 173.4 24.6 349 16-397 2-375 (414)
43 PRK08294 phenol 2-monooxygenas 99.9 1.1E-21 2.7E-26 169.7 26.7 347 14-396 32-413 (634)
44 PRK08774 consensus 99.9 1.4E-21 3.5E-26 168.9 26.3 326 14-378 4-339 (402)
45 PRK06996 hypothetical protein; 99.9 2.6E-21 6.6E-26 167.0 25.5 320 14-377 11-342 (397)
46 TIGR01988 Ubi-OHases Ubiquinon 99.9 3.8E-22 9.8E-27 172.8 19.9 342 16-396 1-412 (445)
47 PRK08255 salicylyl-CoA 5-hydro 99.9 1.8E-20 4.5E-25 161.2 21.1 333 17-405 3-351 (770)
48 PRK07236 hypothetical protein; 99.9 7.9E-20 2E-24 156.7 24.2 329 15-391 7-371 (386)
49 PRK06617 2-octaprenyl-6-methox 99.9 2.1E-19 5.5E-24 153.7 22.0 311 15-378 2-322 (374)
50 pfam04820 Trp_halogenase Trypt 99.8 3.1E-16 7.9E-21 131.7 23.9 326 16-393 1-382 (457)
51 TIGR01984 UbiH 2-polyprenyl-6- 99.8 2.1E-16 5.4E-21 132.9 22.7 323 16-377 1-374 (425)
52 KOG2614 consensus 99.8 9E-18 2.3E-22 142.4 15.4 316 14-373 2-337 (420)
53 KOG1298 consensus 99.8 9.6E-17 2.4E-21 135.3 20.0 304 7-356 38-360 (509)
54 PRK06481 fumarate reductase fl 99.8 1.9E-16 4.8E-21 133.2 21.3 158 14-200 60-256 (506)
55 PRK08275 putative oxidoreducta 99.8 1.4E-14 3.6E-19 120.2 29.6 163 8-196 3-202 (554)
56 pfam05834 Lycopene_cycl Lycope 99.8 1.6E-15 4E-20 126.8 24.6 306 16-383 1-314 (374)
57 PRK04176 ribulose-1,5-biphosph 99.8 1.1E-17 2.7E-22 141.9 12.7 160 11-203 22-182 (257)
58 PRK05945 sdhA succinate dehydr 99.8 9.1E-15 2.3E-19 121.5 26.8 162 12-197 1-200 (575)
59 TIGR01790 carotene-cycl lycope 99.7 8.9E-16 2.3E-20 128.5 19.2 294 16-364 1-324 (419)
60 PRK07121 hypothetical protein; 99.7 1.4E-15 3.6E-20 127.2 20.1 171 13-198 19-243 (491)
61 PRK06452 sdhA succinate dehydr 99.7 1.6E-14 4.2E-19 119.8 25.4 162 11-198 2-202 (566)
62 PRK09078 sdhA succinate dehydr 99.7 5.6E-14 1.4E-18 116.0 27.1 177 1-197 3-215 (598)
63 pfam01946 Thi4 Thi4 family. Th 99.7 1E-16 2.5E-21 135.1 12.7 161 11-205 14-175 (229)
64 PRK06069 sdhA succinate dehydr 99.7 4.7E-14 1.2E-18 116.5 26.0 163 11-197 2-204 (582)
65 PRK07803 sdhA succinate dehydr 99.7 8.5E-14 2.2E-18 114.8 26.7 166 7-198 1-217 (631)
66 COG1635 THI4 Ribulose 1,5-bisp 99.7 2.7E-16 7E-21 132.1 13.9 157 10-203 26-187 (262)
67 PRK08626 fumarate reductase fl 99.7 3.1E-14 7.9E-19 117.8 24.3 174 11-198 2-224 (657)
68 PRK09231 fumarate reductase fl 99.7 1.2E-13 3.1E-18 113.7 27.2 164 11-198 1-200 (582)
69 PRK06263 sdhA succinate dehydr 99.7 7.2E-14 1.8E-18 115.3 25.6 167 8-197 1-200 (539)
70 PTZ00139 succinate dehydrogena 99.7 1.7E-13 4.2E-18 112.8 27.3 167 14-197 34-237 (622)
71 PRK08641 sdhA succinate dehydr 99.7 8.4E-13 2.1E-17 107.9 30.0 315 14-364 3-414 (589)
72 PRK12834 putative FAD-binding 99.7 5.3E-14 1.3E-18 116.2 23.1 182 13-200 1-231 (549)
73 TIGR01989 COQ6 Ubiquinone bios 99.7 4.5E-15 1.1E-19 123.7 17.4 348 15-379 1-437 (481)
74 PRK08958 sdhA succinate dehydr 99.7 9.2E-13 2.3E-17 107.6 28.4 168 14-198 7-210 (588)
75 PRK08205 sdhA succinate dehydr 99.7 6.2E-13 1.6E-17 108.8 26.7 161 14-199 5-211 (583)
76 TIGR00292 TIGR00292 thiazole b 99.7 1.2E-15 2.9E-20 127.8 12.1 162 11-200 18-201 (283)
77 PRK11259 solA N-methyltryptoph 99.7 6.3E-15 1.6E-19 122.7 14.7 160 12-195 1-205 (377)
78 TIGR02360 pbenz_hydroxyl 4-hyd 99.7 3.5E-14 8.9E-19 117.5 17.9 325 13-380 1-340 (393)
79 PRK07057 sdhA succinate dehydr 99.7 5.3E-13 1.4E-17 109.2 23.8 179 1-198 1-215 (591)
80 PRK12771 putative glutamate sy 99.6 2.5E-13 6.4E-18 111.5 21.7 39 14-54 137-175 (560)
81 PRK12842 putative succinate de 99.6 4.6E-14 1.2E-18 116.6 14.0 64 121-197 210-274 (567)
82 PRK07233 hypothetical protein; 99.6 1.5E-11 3.8E-16 99.2 24.3 56 121-193 197-252 (430)
83 PRK00711 D-amino acid dehydrog 99.6 4.5E-12 1.1E-16 102.8 21.4 73 117-206 197-270 (416)
84 PRK06175 L-aspartate oxidase; 99.6 9.6E-12 2.4E-16 100.5 23.0 334 13-389 3-423 (433)
85 PRK12409 D-amino acid dehydrog 99.6 4.6E-12 1.2E-16 102.7 21.3 208 116-357 192-404 (410)
86 PRK06854 adenylylsulfate reduc 99.6 2E-12 5E-17 105.3 19.2 178 7-198 4-202 (610)
87 pfam03486 HI0933_like HI0933-l 99.5 2.5E-13 6.3E-18 111.5 13.9 138 15-195 1-165 (405)
88 PRK12835 3-ketosteroid-delta-1 99.5 2.7E-13 6.9E-18 111.3 13.4 94 122-227 214-312 (584)
89 PRK13800 putative oxidoreducta 99.5 2E-12 5.2E-17 105.2 17.8 176 7-200 6-211 (894)
90 PRK06134 putative FAD-binding 99.5 1.1E-13 2.9E-18 113.9 11.1 65 122-199 216-281 (579)
91 PRK08274 tricarballylate dehyd 99.5 1.8E-12 4.5E-17 105.6 17.1 177 14-227 4-225 (456)
92 PRK12844 3-ketosteroid-delta-1 99.5 4.9E-13 1.2E-17 109.5 13.8 199 13-228 5-308 (552)
93 PRK12843 putative FAD-binding 99.5 6.7E-13 1.7E-17 108.6 12.6 91 122-226 220-316 (576)
94 pfam00890 FAD_binding_2 FAD bi 99.5 1.1E-12 2.9E-17 107.0 13.2 170 16-200 1-209 (401)
95 TIGR03467 HpnE squalene-associ 99.5 2.1E-11 5.5E-16 98.1 19.6 39 17-57 1-39 (430)
96 PRK09077 L-aspartate oxidase; 99.5 3.5E-11 9E-16 96.6 20.0 164 13-197 7-210 (535)
97 PRK07843 3-ketosteroid-delta-1 99.5 1.3E-12 3.3E-17 106.6 12.7 71 122-200 207-278 (560)
98 PRK12839 hypothetical protein; 99.5 1.9E-12 5E-17 105.3 13.6 63 122-196 217-280 (574)
99 PRK11728 hypothetical protein; 99.5 1.4E-12 3.4E-17 106.4 12.0 171 13-201 1-213 (400)
100 TIGR03140 AhpF alkyl hydropero 99.5 1.4E-12 3.6E-17 106.3 12.0 112 14-194 212-323 (515)
101 PRK11101 glpA sn-glycerol-3-ph 99.5 1.2E-11 3.1E-16 99.8 16.5 172 10-199 1-215 (545)
102 COG2081 Predicted flavoprotein 99.5 3.3E-13 8.4E-18 110.7 8.5 160 13-196 2-169 (408)
103 TIGR03329 Phn_aa_oxid putative 99.4 5.2E-11 1.3E-15 95.4 19.1 164 13-199 23-243 (460)
104 TIGR03143 AhpF_homolog putativ 99.4 2.6E-12 6.7E-17 104.4 12.0 111 15-195 5-115 (555)
105 COG1053 SdhA Succinate dehydro 99.4 1.6E-10 4.1E-15 92.0 19.6 162 12-197 4-205 (562)
106 PRK12837 3-ketosteroid-delta-1 99.4 4.4E-12 1.1E-16 102.9 10.6 193 14-228 9-275 (515)
107 TIGR01292 TRX_reduct thioredox 99.4 4.1E-12 1E-16 103.1 10.0 115 15-195 1-120 (321)
108 PRK07395 L-aspartate oxidase; 99.4 1.2E-11 3.1E-16 99.8 11.9 158 14-197 10-201 (556)
109 PRK12845 3-ketosteroid-delta-1 99.4 5.4E-12 1.4E-16 102.3 10.0 63 122-197 218-281 (566)
110 PRK11883 protoporphyrinogen ox 99.4 1.2E-09 3.1E-14 85.9 21.5 41 16-56 2-42 (452)
111 pfam01266 DAO FAD dependent ox 99.4 1.1E-11 2.7E-16 100.2 10.9 156 16-196 1-204 (309)
112 PRK08071 L-aspartate oxidase; 99.4 5.1E-10 1.3E-14 88.5 19.2 159 14-197 3-193 (510)
113 PRK13369 glycerol-3-phosphate 99.3 2.9E-10 7.4E-15 90.2 17.7 314 12-360 4-375 (503)
114 COG2509 Uncharacterized FAD-de 99.3 2.9E-10 7.3E-15 90.2 17.1 189 10-220 14-255 (486)
115 PRK05249 soluble pyridine nucl 99.3 5E-12 1.3E-16 102.5 8.0 152 6-196 1-152 (465)
116 COG0665 DadA Glycine/D-amino a 99.3 1.1E-09 2.9E-14 86.1 20.0 303 12-358 2-366 (387)
117 PRK01747 mnmC 5-methylaminomet 99.3 2.6E-09 6.6E-14 83.6 21.5 157 15-195 257-459 (660)
118 COG2440 FixX Ferredoxin-like p 99.3 8.7E-13 2.2E-17 107.8 3.6 89 456-552 8-97 (99)
119 TIGR01813 flavo_cyto_c flavocy 99.3 1.9E-11 4.9E-16 98.4 9.9 163 16-196 1-211 (487)
120 KOG3855 consensus 99.3 1.1E-10 2.9E-15 93.1 13.1 326 14-373 36-424 (481)
121 PRK07512 L-aspartate oxidase; 99.3 7.9E-11 2E-15 94.2 11.9 166 6-197 1-200 (507)
122 TIGR01373 soxB sarcosine oxida 99.3 5.4E-11 1.4E-15 95.3 10.8 179 13-209 29-256 (407)
123 COG0578 GlpA Glycerol-3-phosph 99.3 7E-09 1.8E-13 80.6 21.2 316 10-359 9-382 (532)
124 PRK11749 putative oxidoreducta 99.3 2.2E-09 5.7E-14 84.1 18.4 38 14-53 140-177 (460)
125 PRK10262 thioredoxin reductase 99.3 5.9E-11 1.5E-15 95.0 9.9 116 10-194 2-117 (321)
126 PRK12810 gltD glutamate syntha 99.2 1.7E-09 4.4E-14 84.9 17.0 39 14-54 143-181 (472)
127 PRK12266 glpD glycerol-3-phosp 99.2 1.9E-08 4.8E-13 77.7 21.9 163 14-193 6-215 (503)
128 PRK12831 putative oxidoreducta 99.2 5.3E-10 1.3E-14 88.4 13.8 38 15-54 141-178 (464)
129 PTZ00306 NADH-dependent fumara 99.2 2.1E-09 5.3E-14 84.3 16.1 193 13-225 408-658 (1167)
130 PRK07573 sdhA succinate dehydr 99.2 1.5E-10 3.9E-15 92.2 10.0 163 14-197 33-233 (638)
131 TIGR01812 sdhA_frdA_Gneg succi 99.2 3.2E-10 8.2E-15 89.9 11.3 173 16-198 1-231 (636)
132 PRK05329 anaerobic glycerol-3- 99.2 2.2E-08 5.5E-13 77.2 20.4 36 13-50 1-36 (425)
133 PRK09564 coenzyme A disulfide 99.2 2.1E-08 5.3E-13 77.3 20.3 39 16-54 2-40 (443)
134 PRK06467 dihydrolipoamide dehy 99.2 5.8E-10 1.5E-14 88.1 12.3 147 13-195 3-149 (472)
135 COG0492 TrxB Thioredoxin reduc 99.2 3E-10 7.8E-15 90.1 10.7 118 13-198 2-119 (305)
136 PRK07251 pyridine nucleotide-d 99.2 1.8E-10 4.7E-15 91.6 9.3 130 13-196 2-132 (438)
137 PRK08401 L-aspartate oxidase; 99.2 9.9E-09 2.5E-13 79.6 18.0 297 15-362 2-367 (464)
138 COG0579 Predicted dehydrogenas 99.2 9.6E-10 2.4E-14 86.6 12.7 168 13-200 2-218 (429)
139 TIGR01372 soxA sarcosine oxida 99.2 7.4E-10 1.9E-14 87.4 12.1 173 14-197 176-436 (1026)
140 PRK05976 dihydrolipoamide dehy 99.2 4.9E-10 1.3E-14 88.6 10.4 145 14-195 4-151 (464)
141 PRK06416 dihydrolipoamide dehy 99.1 3.5E-10 8.9E-15 89.7 9.3 144 12-196 2-148 (462)
142 PRK12769 putative oxidoreducta 99.1 6.2E-10 1.6E-14 87.9 10.4 38 15-54 328-365 (654)
143 PRK12778 putative bifunctional 99.1 5.3E-10 1.3E-14 88.4 9.9 39 14-54 439-477 (760)
144 TIGR03315 Se_ygfK putative sel 99.1 4.9E-09 1.2E-13 81.7 14.5 36 16-53 539-574 (1012)
145 TIGR01816 sdhA_forward succina 99.1 1E-09 2.6E-14 86.4 11.0 318 14-364 2-427 (615)
146 PRK06370 mercuric reductase; V 99.1 4.5E-09 1.2E-13 81.9 14.1 35 14-50 4-38 (459)
147 PRK06115 dihydrolipoamide dehy 99.1 3.2E-10 8.3E-15 89.9 8.2 142 14-195 3-149 (466)
148 TIGR01789 lycopene_cycl lycope 99.1 6.8E-09 1.7E-13 80.7 14.8 302 16-380 1-323 (392)
149 PRK07818 dihydrolipoamide dehy 99.1 1.2E-08 3.1E-13 78.9 15.3 37 14-52 4-40 (467)
150 PRK08010 pyridine nucleotide-d 99.1 3.6E-08 9.2E-13 75.7 17.6 37 14-52 3-40 (441)
151 PRK07804 L-aspartate oxidase; 99.1 3.6E-09 9.3E-14 82.6 12.4 154 14-196 15-204 (533)
152 TIGR03364 HpnW_proposed FAD de 99.1 1.8E-09 4.7E-14 84.6 10.8 151 15-195 1-198 (365)
153 PRK07845 flavoprotein disulfid 99.1 4.1E-09 1.1E-13 82.2 12.2 34 15-50 2-35 (467)
154 pfam07992 Pyr_redox_2 Pyridine 99.1 2.5E-09 6.4E-14 83.7 11.1 106 16-193 1-106 (277)
155 PRK12809 putative oxidoreducta 99.1 1.3E-09 3.3E-14 85.7 9.0 38 15-54 311-348 (639)
156 PTZ00052 thioredoxin reductase 99.0 5.1E-10 1.3E-14 88.5 6.8 150 12-197 39-199 (541)
157 TIGR02352 thiamin_ThiO glycine 99.0 6.9E-08 1.8E-12 73.7 17.5 291 17-357 1-354 (357)
158 PRK06327 dihydrolipoamide dehy 99.0 3.9E-09 1E-13 82.4 11.1 46 14-61 4-50 (475)
159 TIGR03378 glycerol3P_GlpB glyc 99.0 2.6E-07 6.5E-12 69.8 20.0 34 15-50 1-34 (419)
160 PRK13984 putative oxidoreducta 99.0 1.9E-09 4.7E-14 84.6 8.3 39 14-54 283-321 (604)
161 PRK05675 sdhA succinate dehydr 99.0 2.7E-06 6.9E-11 62.6 24.3 152 27-197 1-192 (570)
162 pfam01134 GIDA Glucose inhibit 99.0 1.1E-09 2.8E-14 86.2 6.7 139 16-192 1-150 (391)
163 PRK06116 glutathione reductase 99.0 1.5E-09 3.9E-14 85.2 7.2 35 14-50 4-38 (450)
164 KOG0042 consensus 99.0 2.9E-08 7.5E-13 76.3 13.6 387 7-436 52-530 (680)
165 COG2072 TrkA Predicted flavopr 99.0 1.4E-08 3.6E-13 78.5 11.9 137 14-194 8-144 (443)
166 PRK12814 putative NADPH-depend 99.0 1E-08 2.5E-13 79.5 10.6 38 15-54 194-231 (652)
167 TIGR01377 soxA_mon sarcosine o 99.0 6.4E-08 1.6E-12 73.9 14.6 303 15-361 1-380 (401)
168 PRK12775 putative trifunctiona 99.0 6.5E-09 1.7E-13 80.8 9.5 178 16-195 434-689 (993)
169 pfam00743 FMO-like Flavin-bind 99.0 4.1E-08 1.1E-12 75.3 13.5 143 17-195 4-151 (532)
170 TIGR01318 gltD_gamma_fam gluta 98.9 8.5E-09 2.2E-13 80.0 9.3 35 17-53 146-180 (480)
171 pfam01593 Amino_oxidase Flavin 98.9 6.2E-07 1.6E-11 67.1 18.5 59 120-195 203-261 (444)
172 PRK13748 putative mercuric red 98.9 3.7E-09 9.4E-14 82.5 6.8 35 14-50 98-132 (561)
173 COG1249 Lpd Pyruvate/2-oxoglut 98.9 7.7E-09 2E-13 80.3 7.6 147 12-198 2-151 (454)
174 PRK06292 dihydrolipoamide dehy 98.8 4.8E-09 1.2E-13 81.8 5.6 35 14-50 3-37 (460)
175 TIGR01317 GOGAT_sm_gam glutama 98.8 1.7E-08 4.5E-13 77.9 8.4 36 15-52 152-187 (517)
176 COG1233 Phytoene dehydrogenase 98.8 8.6E-09 2.2E-13 80.0 5.4 57 120-192 223-279 (487)
177 KOG2820 consensus 98.8 1.6E-07 4.1E-12 71.2 11.9 161 11-193 4-211 (399)
178 TIGR01350 lipoamide_DH dihydro 98.8 7.3E-09 1.9E-13 80.5 5.0 146 14-196 1-149 (481)
179 TIGR01316 gltA glutamate synth 98.8 4.4E-08 1.1E-12 75.1 8.9 183 11-195 139-400 (462)
180 PRK09754 phenylpropionate diox 98.8 8.8E-07 2.2E-11 66.0 15.2 66 14-79 3-73 (400)
181 PRK05192 tRNA uridine 5-carbox 98.7 5.5E-08 1.4E-12 74.4 8.3 144 13-191 5-156 (621)
182 TIGR00551 nadB L-aspartate oxi 98.7 1.8E-07 4.7E-12 70.7 9.9 314 13-360 1-414 (546)
183 PRK07846 mycothione/glutathion 98.7 3.2E-07 8.2E-12 69.1 10.8 33 14-50 1-33 (453)
184 TIGR02485 CobZ_N-term precorri 98.7 5E-08 1.3E-12 74.7 6.6 276 15-342 2-326 (467)
185 KOG1399 consensus 98.7 2E-07 5E-12 70.6 9.5 141 13-193 5-152 (448)
186 KOG4254 consensus 98.7 2.2E-08 5.6E-13 77.2 4.1 65 120-200 263-327 (561)
187 COG3380 Predicted NAD/FAD-depe 98.7 4.2E-07 1.1E-11 68.2 10.5 290 16-360 3-331 (331)
188 PRK02106 choline dehydrogenase 98.6 3.6E-08 9.2E-13 75.7 4.8 37 12-49 3-39 (555)
189 PRK07208 hypothetical protein; 98.6 4.6E-08 1.2E-12 74.9 5.0 39 14-54 3-41 (474)
190 PRK12770 putative glutamate sy 98.6 5.6E-08 1.4E-12 74.4 4.8 38 15-54 18-55 (350)
191 TIGR03197 MnmC_Cterm tRNA U-34 98.6 2.7E-05 6.8E-10 55.7 18.4 62 117-196 131-192 (381)
192 PRK06912 acoL dihydrolipoamide 98.6 2.7E-07 6.8E-12 69.6 8.2 35 16-52 2-36 (458)
193 TIGR01176 fum_red_Fp fumarate 98.6 4.7E-07 1.2E-11 67.9 9.2 168 13-198 2-199 (585)
194 KOG2960 consensus 98.6 2.4E-07 6.1E-12 70.0 7.4 154 14-197 76-237 (328)
195 TIGR03452 mycothione_red mycot 98.6 2.3E-07 5.9E-12 70.1 7.0 33 14-50 2-34 (452)
196 TIGR03169 Nterm_to_SelD pyridi 98.6 1.9E-05 4.9E-10 56.7 16.7 45 319-363 269-313 (364)
197 COG3634 AhpF Alkyl hydroperoxi 98.6 1.9E-07 4.8E-12 70.7 6.4 113 14-194 211-325 (520)
198 TIGR02734 crtI_fam phytoene de 98.5 1.5E-07 3.7E-12 71.4 5.7 52 17-70 1-65 (526)
199 PRK09853 putative selenate red 98.5 1.3E-07 3.3E-12 71.8 5.3 37 15-53 551-587 (1032)
200 COG0445 GidA Flavin-dependent 98.5 2.5E-07 6.5E-12 69.8 6.2 139 14-192 4-156 (621)
201 PRK04965 nitric oxide reductas 98.5 7.6E-06 2E-10 59.5 13.6 40 13-52 1-40 (378)
202 KOG0029 consensus 98.5 2.3E-07 6E-12 70.0 5.3 41 13-55 14-54 (501)
203 KOG2844 consensus 98.5 6.6E-07 1.7E-11 66.9 7.5 167 15-200 40-249 (856)
204 COG0029 NadB Aspartate oxidase 98.4 4.2E-06 1.1E-10 61.3 10.3 160 16-199 9-201 (518)
205 KOG1335 consensus 98.4 9.7E-07 2.5E-11 65.7 6.4 39 13-53 38-76 (506)
206 COG1148 HdrA Heterodisulfide r 98.4 2.8E-06 7.1E-11 62.5 8.7 52 11-72 121-172 (622)
207 COG3486 IucD Lysine/ornithine 98.4 3E-06 7.6E-11 62.4 8.6 150 14-197 5-160 (436)
208 TIGR00031 UDP-GALP_mutase UDP- 98.3 7.7E-07 2E-11 66.4 5.0 37 14-52 1-38 (390)
209 TIGR01811 sdhA_Bsu succinate d 98.3 1.8E-05 4.7E-10 56.9 11.7 151 17-198 1-203 (620)
210 PRK13512 coenzyme A disulfide 98.3 1.2E-05 3.1E-10 58.1 10.7 38 16-53 3-40 (438)
211 COG2303 BetA Choline dehydroge 98.3 8.3E-07 2.1E-11 66.2 4.6 37 11-49 4-40 (542)
212 COG1232 HemY Protoporphyrinoge 98.3 1.5E-06 3.9E-11 64.4 5.2 41 17-57 3-43 (444)
213 PRK12779 putative bifunctional 98.2 1.9E-06 4.8E-11 63.8 5.2 75 300-388 575-649 (944)
214 PRK13339 malate:quinone oxidor 98.2 1.9E-05 4.8E-10 56.8 9.6 174 14-200 6-254 (497)
215 TIGR02730 carot_isom carotene 98.2 5.2E-05 1.3E-09 53.7 11.8 213 120-358 228-503 (506)
216 TIGR02733 desat_CrtD C-3',4' d 98.2 2.3E-06 5.7E-11 63.2 4.5 71 118-200 229-299 (499)
217 pfam08491 SE Squalene epoxidas 98.2 1.6E-05 4.1E-10 57.3 8.8 154 183-358 2-166 (276)
218 PTZ00153 lipoamide dehydrogena 98.2 3.7E-06 9.6E-11 61.7 5.5 53 12-66 121-174 (673)
219 COG3573 Predicted oxidoreducta 98.2 0.00013 3.4E-09 50.9 13.3 220 12-239 3-283 (552)
220 COG3075 GlpB Anaerobic glycero 98.1 5.2E-06 1.3E-10 60.7 5.6 36 13-50 1-36 (421)
221 PRK09897 hypothetical protein; 98.1 2.9E-05 7.4E-10 55.5 9.0 143 17-195 4-167 (535)
222 PRK12416 protoporphyrinogen ox 98.1 5.5E-06 1.4E-10 60.5 5.2 42 16-57 3-48 (466)
223 KOG2853 consensus 98.1 0.00048 1.2E-08 47.0 15.0 35 15-49 87-123 (509)
224 TIGR00137 gid gid protein; Int 98.1 9.4E-06 2.4E-10 58.9 6.2 109 16-148 2-124 (444)
225 KOG2852 consensus 98.1 0.00056 1.4E-08 46.5 14.7 309 10-359 6-363 (380)
226 COG4529 Uncharacterized protei 98.0 7.6E-05 1.9E-09 52.6 9.8 150 15-196 2-166 (474)
227 COG3349 Uncharacterized conser 98.0 8.2E-06 2.1E-10 59.3 4.8 40 17-58 3-42 (485)
228 TIGR02061 aprA adenylylsulfate 98.0 4.3E-05 1.1E-09 54.3 8.3 390 16-435 1-555 (651)
229 KOG0404 consensus 98.0 5E-05 1.3E-09 53.8 8.2 115 15-193 9-123 (322)
230 KOG2665 consensus 98.0 7.6E-05 1.9E-09 52.6 9.1 170 14-200 48-263 (453)
231 pfam06039 Mqo Malate:quinone o 98.0 6.9E-05 1.8E-09 52.9 8.8 173 14-199 4-251 (489)
232 TIGR01421 gluta_reduc_1 glutat 97.9 3.6E-05 9.3E-10 54.8 7.0 149 14-197 2-157 (475)
233 COG0562 Glf UDP-galactopyranos 97.9 2E-05 5.2E-10 56.6 5.1 37 14-52 1-37 (374)
234 PRK06115 dihydrolipoamide dehy 97.9 0.00055 1.4E-08 46.6 12.1 61 125-197 219-279 (466)
235 PRK05335 tRNA (uracil-5-)-meth 97.8 2.5E-05 6.3E-10 56.0 4.8 35 12-48 1-35 (434)
236 TIGR01438 TGR thioredoxin and 97.8 1.8E-05 4.5E-10 56.9 4.0 32 14-47 2-33 (513)
237 KOG1238 consensus 97.8 2.3E-05 5.8E-10 56.2 4.4 37 14-51 57-93 (623)
238 TIGR03385 CoA_CoA_reduc CoA-di 97.8 0.00057 1.4E-08 46.5 11.2 40 318-357 258-302 (427)
239 PRK09564 coenzyme A disulfide 97.8 0.0006 1.5E-08 46.3 11.2 40 318-357 270-314 (443)
240 COG0446 HcaD Uncharacterized N 97.7 0.0011 2.7E-08 44.6 11.6 37 17-53 1-37 (415)
241 KOG2311 consensus 97.7 7.9E-05 2E-09 52.5 5.8 143 14-191 28-183 (679)
242 PRK05257 malate:quinone oxidor 97.7 0.00073 1.9E-08 45.7 10.6 178 10-199 5-256 (499)
243 PRK05976 dihydrolipoamide dehy 97.7 0.0012 3E-08 44.3 11.6 56 126-196 221-276 (464)
244 KOG1276 consensus 97.7 7.8E-05 2E-09 52.5 5.3 47 11-57 8-54 (491)
245 PRK06416 dihydrolipoamide dehy 97.7 0.0013 3.3E-08 44.0 11.4 25 127-151 219-243 (462)
246 COG0493 GltD NADPH-dependent g 97.7 4.3E-05 1.1E-09 54.3 3.8 42 15-58 124-165 (457)
247 PRK06116 glutathione reductase 97.7 0.0013 3.4E-08 43.9 11.4 35 318-357 292-326 (450)
248 COG1231 Monoamine oxidase [Ami 97.6 0.0001 2.6E-09 51.7 4.9 40 14-55 7-46 (450)
249 TIGR03377 glycerol3P_GlpA glyc 97.6 0.006 1.5E-07 39.4 14.0 210 117-360 124-344 (516)
250 PRK06912 acoL dihydrolipoamide 97.6 0.0022 5.6E-08 42.4 11.7 33 319-356 295-327 (458)
251 pfam00070 Pyr_redox Pyridine n 97.6 0.001 2.6E-08 44.8 9.8 77 17-159 2-78 (82)
252 KOG2404 consensus 97.6 0.0014 3.7E-08 43.7 10.4 193 16-224 11-241 (477)
253 PRK05249 soluble pyridine nucl 97.6 0.0016 4E-08 43.5 10.5 53 127-196 223-275 (465)
254 PRK06327 dihydrolipoamide dehy 97.5 0.0041 1E-07 40.6 12.3 35 318-357 311-345 (475)
255 PRK07845 flavoprotein disulfid 97.4 0.004 1E-07 40.6 11.2 35 318-357 302-336 (467)
256 PRK07251 pyridine nucleotide-d 97.4 0.005 1.3E-07 39.9 11.5 32 16-49 159-190 (438)
257 PRK13748 putative mercuric red 97.4 0.0049 1.2E-07 40.0 11.4 36 318-358 392-427 (561)
258 KOG0685 consensus 97.4 0.0003 7.6E-09 48.4 5.1 40 15-55 22-61 (498)
259 PRK13512 coenzyme A disulfide 97.4 0.0033 8.5E-08 41.2 10.4 40 318-357 266-310 (438)
260 COG1249 Lpd Pyruvate/2-oxoglut 97.3 0.013 3.2E-07 37.1 12.4 101 16-197 175-275 (454)
261 TIGR02053 MerA mercuric reduct 97.3 0.0013 3.2E-08 44.1 7.0 36 15-50 1-37 (494)
262 COG1252 Ndh NADH dehydrogenase 97.3 0.0053 1.4E-07 39.8 10.1 56 304-362 277-333 (405)
263 PRK07846 mycothione/glutathion 97.3 0.0072 1.8E-07 38.8 10.8 35 318-357 291-325 (453)
264 KOG3923 consensus 97.3 0.019 4.9E-07 35.9 13.9 235 15-303 4-281 (342)
265 KOG4716 consensus 97.2 0.00034 8.7E-09 48.0 3.9 39 7-47 12-50 (503)
266 PRK06467 dihydrolipoamide dehy 97.2 0.013 3.4E-07 36.9 11.7 31 17-49 177-207 (472)
267 TIGR03452 mycothione_red mycot 97.2 0.009 2.3E-07 38.1 10.8 35 318-357 292-326 (452)
268 PRK12810 gltD glutamate syntha 97.2 0.0098 2.5E-07 37.9 10.8 40 318-362 429-468 (472)
269 KOG1336 consensus 97.2 0.02 5.2E-07 35.7 12.3 33 16-48 76-108 (478)
270 TIGR01350 lipoamide_DH dihydro 97.2 0.012 3.1E-07 37.2 11.2 104 16-197 180-286 (481)
271 TIGR02053 MerA mercuric reduct 97.2 0.0006 1.5E-08 46.3 4.4 108 4-197 175-287 (494)
272 PRK12831 putative oxidoreducta 97.1 0.0097 2.5E-07 37.9 10.0 40 318-362 423-462 (464)
273 PRK06292 dihydrolipoamide dehy 97.1 0.014 3.5E-07 36.9 10.7 35 318-357 295-329 (460)
274 TIGR01320 mal_quin_oxido malat 97.0 0.031 7.9E-07 34.4 12.3 168 15-200 1-249 (487)
275 pfam00996 GDI GDP dissociation 97.0 0.0033 8.3E-08 41.2 7.0 103 14-146 4-106 (439)
276 TIGR02374 nitri_red_nirB nitri 97.0 0.0065 1.6E-07 39.2 8.4 80 126-220 194-287 (813)
277 PRK12769 putative oxidoreducta 97.0 0.00078 2E-08 45.6 3.6 37 319-360 615-651 (654)
278 KOG3851 consensus 96.9 0.0047 1.2E-07 40.1 7.3 53 6-59 31-88 (446)
279 KOG0405 consensus 96.9 0.0099 2.5E-07 37.9 8.8 152 4-197 11-168 (478)
280 PTZ00052 thioredoxin reductase 96.9 0.032 8.2E-07 34.3 11.2 30 16-47 224-253 (541)
281 PTZ00188 adrenodoxin reductase 96.9 0.0018 4.6E-08 43.0 4.7 37 14-51 39-75 (506)
282 KOG0399 consensus 96.9 0.0016 4.1E-08 43.4 4.4 46 491-539 1656-1706(2142)
283 KOG1800 consensus 96.9 0.0019 4.8E-08 42.9 4.7 38 16-53 22-59 (468)
284 PRK08348 NADH-plastoquinone ox 96.8 0.00092 2.4E-08 45.0 3.1 56 480-543 40-95 (111)
285 PRK12771 putative glutamate sy 96.8 0.024 6.1E-07 35.2 10.3 45 494-540 512-556 (560)
286 PRK13795 hypothetical protein; 96.8 0.00061 1.5E-08 46.3 2.0 43 494-538 581-623 (630)
287 PRK12809 putative oxidoreducta 96.8 0.0014 3.4E-08 43.9 3.5 39 318-362 597-636 (639)
288 PRK09626 oorD 2-oxoglutarate-a 96.7 0.00078 2E-08 45.5 2.1 73 465-546 2-78 (103)
289 PTZ00153 lipoamide dehydrogena 96.7 0.05 1.3E-06 33.0 11.1 32 322-358 471-502 (673)
290 TIGR01810 betA choline dehydro 96.7 0.0011 2.8E-08 44.5 2.6 36 16-52 1-37 (540)
291 PRK05888 NADH dehydrogenase su 96.6 0.003 7.7E-08 41.4 4.5 56 482-543 58-119 (172)
292 COG2907 Predicted NAD/FAD-bind 96.6 0.0021 5.5E-08 42.5 3.5 38 15-55 9-46 (447)
293 PRK02651 photosystem I subunit 96.5 0.0015 3.8E-08 43.6 2.0 53 494-546 15-71 (81)
294 TIGR01424 gluta_reduc_2 glutat 96.4 0.011 2.9E-07 37.5 6.0 164 14-227 2-183 (478)
295 TIGR03169 Nterm_to_SelD pyridi 96.4 0.062 1.6E-06 32.3 9.7 35 17-51 2-37 (364)
296 TIGR03048 PS_I_psaC photosyste 96.3 0.0025 6.3E-08 42.1 2.5 54 494-547 14-71 (80)
297 PRK11749 putative oxidoreducta 96.3 0.094 2.4E-06 31.1 11.1 41 318-363 417-457 (460)
298 COG1206 Gid NAD(FAD)-utilizing 96.2 0.0048 1.2E-07 40.0 3.5 101 13-135 2-114 (439)
299 PRK09898 hypothetical protein; 96.1 0.0042 1.1E-07 40.5 2.9 50 493-544 128-177 (208)
300 TIGR03315 Se_ygfK putative sel 96.1 0.12 3.1E-06 30.3 10.7 37 318-359 802-838 (1012)
301 TIGR02732 zeta_caro_desat caro 96.1 0.011 2.7E-07 37.7 4.7 43 16-62 1-43 (474)
302 PRK10330 electron transport pr 96.1 0.0082 2.1E-07 38.4 4.0 45 493-541 63-107 (181)
303 TIGR00692 tdh L-threonine 3-de 95.9 0.012 2.9E-07 37.4 4.2 35 15-50 163-197 (341)
304 PRK12387 formate hydrogenlyase 95.8 0.0058 1.5E-07 39.5 2.5 57 480-542 36-94 (178)
305 TIGR03478 DMSO_red_II_bet DMSO 95.8 0.026 6.7E-07 34.9 5.6 13 274-286 223-235 (321)
306 COG1143 NuoI Formate hydrogenl 95.7 0.0059 1.5E-07 39.4 2.2 52 484-541 57-115 (172)
307 COG1146 Ferredoxin [Energy pro 95.6 0.011 2.7E-07 37.7 3.0 54 493-546 13-66 (68)
308 COG1252 Ndh NADH dehydrogenase 95.6 0.026 6.6E-07 34.9 4.9 35 16-50 5-39 (405)
309 TIGR03149 cyt_nit_nrfC cytochr 95.5 0.011 2.7E-07 37.6 2.9 51 493-546 99-149 (225)
310 PRK05035 electron transport co 95.5 0.0027 7E-08 41.8 -0.4 44 494-537 382-431 (725)
311 TIGR03385 CoA_CoA_reduc CoA-di 95.4 0.071 1.8E-06 31.9 6.8 27 28-54 1-27 (427)
312 CHL00065 psaC photosystem I su 95.4 0.0085 2.2E-07 38.3 2.0 54 494-547 15-72 (81)
313 COG0569 TrkA K+ transport syst 95.4 0.035 9E-07 34.0 5.1 52 16-69 2-62 (225)
314 PRK08222 hydrogenase 4 subunit 95.4 0.013 3.3E-07 37.1 2.8 57 480-542 36-94 (181)
315 COG1142 HycB Fe-S-cluster-cont 95.3 0.014 3.5E-07 36.9 2.7 52 488-543 53-104 (165)
316 TIGR01317 GOGAT_sm_gam glutama 95.2 0.033 8.3E-07 34.3 4.5 104 10-167 303-408 (517)
317 PRK13409 putative ATPase RIL; 95.2 0.022 5.6E-07 35.5 3.5 15 84-98 96-110 (590)
318 PRK10882 hydrogenase 2 protein 95.2 0.046 1.2E-06 33.2 5.1 24 337-360 285-308 (329)
319 TIGR00136 gidA glucose-inhibit 95.0 0.028 7.3E-07 34.7 3.6 146 15-193 1-160 (630)
320 PRK09853 putative selenate red 94.9 0.32 8.1E-06 27.4 10.7 37 318-359 815-851 (1032)
321 PRK04965 nitric oxide reductas 94.9 0.053 1.4E-06 32.8 4.7 48 129-196 66-113 (378)
322 COG1245 Predicted ATPase, RNas 94.7 0.033 8.5E-07 34.2 3.4 106 284-396 327-450 (591)
323 PRK07118 ferredoxin; Validated 94.7 0.0087 2.2E-07 38.3 0.4 47 494-544 219-265 (276)
324 PRK09754 phenylpropionate diox 94.7 0.062 1.6E-06 32.3 4.8 40 318-357 264-307 (400)
325 CHL00014 ndhI NADH dehydrogena 94.6 0.029 7.3E-07 34.7 2.9 58 482-545 62-126 (173)
326 PRK06370 mercuric reductase; V 94.6 0.22 5.6E-06 28.5 7.3 34 319-357 298-331 (459)
327 KOG4405 consensus 94.5 0.052 1.3E-06 32.9 4.0 40 14-55 8-47 (547)
328 TIGR03140 AhpF alkyl hydropero 94.5 0.072 1.8E-06 31.9 4.7 24 183-206 213-236 (515)
329 PTZ00318 NADH dehydrogenase; P 94.5 0.045 1.1E-06 33.3 3.6 49 15-65 11-63 (514)
330 TIGR02731 phytoene_desat phyto 94.4 0.051 1.3E-06 32.9 3.8 36 17-54 2-37 (454)
331 PRK08010 pyridine nucleotide-d 94.4 0.088 2.2E-06 31.3 5.0 33 320-357 283-315 (441)
332 COG0446 HcaD Uncharacterized N 94.4 0.071 1.8E-06 31.9 4.5 101 15-195 137-238 (415)
333 pfam02254 TrkA_N TrkA-N domain 94.4 0.079 2E-06 31.6 4.6 50 17-69 1-57 (115)
334 COG5044 MRS6 RAB proteins gera 94.3 0.091 2.3E-06 31.2 4.9 39 14-54 6-44 (434)
335 TIGR03294 FrhG coenzyme F420 h 94.3 0.02 5.2E-07 35.7 1.5 54 473-536 163-218 (228)
336 COG1233 Phytoene dehydrogenase 94.1 0.23 5.8E-06 28.4 6.6 40 13-54 2-41 (487)
337 PRK02006 murD UDP-N-acetylmura 94.1 0.11 2.7E-06 30.7 4.8 36 14-51 7-42 (501)
338 PRK07818 dihydrolipoamide dehy 94.1 0.098 2.5E-06 31.0 4.6 59 126-196 218-276 (467)
339 KOG2755 consensus 93.8 0.044 1.1E-06 33.4 2.5 36 17-52 2-37 (334)
340 pfam07992 Pyr_redox_2 Pyridine 93.8 0.14 3.7E-06 29.8 5.0 15 319-333 261-275 (277)
341 PRK09496 trkA potassium transp 93.7 0.14 3.6E-06 29.9 4.8 51 17-69 3-61 (455)
342 pfam01262 AlaDh_PNT_C Alanine 93.7 0.14 3.5E-06 29.9 4.8 34 15-50 21-54 (150)
343 TIGR03143 AhpF_homolog putativ 93.5 0.15 3.9E-06 29.6 4.8 40 318-361 270-309 (555)
344 PRK10262 thioredoxin reductase 93.3 0.63 1.6E-05 25.4 11.9 41 318-362 276-316 (321)
345 TIGR03366 HpnZ_proposed putati 93.3 0.14 3.6E-06 29.9 4.3 11 37-47 3-13 (280)
346 PRK09496 trkA potassium transp 93.2 0.21 5.4E-06 28.6 5.1 11 14-24 23-33 (455)
347 KOG2403 consensus 93.0 0.13 3.4E-06 30.1 3.8 57 14-72 55-111 (642)
348 PRK09623 vorD 2-ketoisovalerat 92.9 0.054 1.4E-06 32.7 1.7 62 476-542 41-102 (105)
349 PRK06567 putative bifunctional 92.9 0.099 2.5E-06 30.9 3.0 169 10-195 397-581 (1048)
350 PRK02472 murD UDP-N-acetylmura 92.9 0.23 5.8E-06 28.4 4.9 34 16-51 11-44 (450)
351 pfam02737 3HCDH_N 3-hydroxyacy 92.9 0.18 4.6E-06 29.1 4.3 32 17-50 2-33 (180)
352 PRK01438 murD UDP-N-acetylmura 92.9 0.2 5.2E-06 28.8 4.6 33 16-50 16-48 (481)
353 PRK09260 3-hydroxybutyryl-CoA 92.9 0.17 4.3E-06 29.3 4.2 32 17-50 5-36 (289)
354 TIGR00275 TIGR00275 conserved 92.5 0.13 3.4E-06 30.0 3.3 161 18-197 1-170 (411)
355 PRK08293 3-hydroxybutyryl-CoA 92.3 0.23 5.8E-06 28.4 4.2 32 17-50 6-37 (288)
356 PRK00141 murD UDP-N-acetylmura 92.1 0.33 8.5E-06 27.3 4.9 39 10-50 13-51 (476)
357 PRK05808 3-hydroxybutyryl-CoA 92.1 0.25 6.3E-06 28.2 4.2 33 16-50 5-37 (282)
358 PRK07530 3-hydroxybutyryl-CoA 91.9 0.26 6.5E-06 28.1 4.2 33 16-50 6-38 (292)
359 PRK12549 shikimate 5-dehydroge 91.9 0.41 1.1E-05 26.6 5.2 70 121-201 78-147 (284)
360 PRK07660 consensus 91.9 0.27 6.8E-06 27.9 4.2 33 16-50 5-37 (283)
361 PRK09424 pntA NAD(P) transhydr 91.9 0.23 5.9E-06 28.3 3.9 29 17-47 168-196 (510)
362 TIGR03224 benzo_boxA benzoyl-C 91.9 0.16 4.1E-06 29.4 3.1 14 246-259 254-267 (411)
363 TIGR02356 adenyl_thiF thiazole 91.8 0.25 6.4E-06 28.1 4.0 33 15-48 22-54 (210)
364 TIGR01971 NuoI NADH-quinone ox 91.8 0.11 2.8E-06 30.6 2.1 56 481-542 43-110 (129)
365 PRK06035 3-hydroxyacyl-CoA deh 91.7 0.27 6.9E-06 27.9 4.1 33 16-50 5-37 (291)
366 PRK09117 consensus 91.6 0.3 7.6E-06 27.6 4.2 32 17-50 5-36 (282)
367 PRK03806 murD UDP-N-acetylmura 91.6 0.38 9.8E-06 26.8 4.7 33 16-50 8-40 (438)
368 PRK03369 murD UDP-N-acetylmura 91.6 0.34 8.7E-06 27.2 4.5 32 15-48 13-44 (487)
369 PRK09624 porD pyuvate ferredox 91.5 0.11 2.9E-06 30.5 1.9 56 478-542 47-102 (105)
370 PRK12475 thiamine/molybdopteri 91.4 0.44 1.1E-05 26.5 4.9 36 13-49 23-58 (337)
371 PRK03659 glutathione-regulated 91.4 0.52 1.3E-05 25.9 5.3 10 185-194 403-412 (602)
372 PRK08229 2-dehydropantoate 2-r 91.2 0.3 7.7E-06 27.6 3.9 32 17-50 5-36 (341)
373 pfam06100 Strep_67kDa_ant Stre 91.2 0.52 1.3E-05 25.9 5.1 39 15-53 3-43 (500)
374 PRK13977 myosin-cross-reactive 91.2 0.52 1.3E-05 25.9 5.1 40 14-53 22-63 (577)
375 COG0437 HybA Fe-S-cluster-cont 91.1 0.25 6.3E-06 28.2 3.4 50 493-544 74-123 (203)
376 PRK06129 3-hydroxyacyl-CoA deh 90.9 0.38 9.7E-06 26.9 4.2 32 17-50 5-36 (308)
377 PRK07688 thiamine/molybdopteri 90.8 0.51 1.3E-05 26.0 4.8 36 13-49 23-58 (339)
378 PRK06130 3-hydroxybutyryl-CoA 90.8 0.42 1.1E-05 26.5 4.3 32 16-49 7-38 (310)
379 pfam02558 ApbA Ketopantoate re 90.7 0.45 1.2E-05 26.3 4.5 31 17-49 1-31 (150)
380 PRK03803 murD UDP-N-acetylmura 90.7 0.45 1.1E-05 26.3 4.4 35 15-51 8-42 (448)
381 PRK07819 3-hydroxybutyryl-CoA 90.7 0.43 1.1E-05 26.5 4.3 32 17-50 5-36 (284)
382 PRK04663 murD UDP-N-acetylmura 90.6 0.51 1.3E-05 26.0 4.6 36 16-51 9-44 (438)
383 PRK06522 2-dehydropantoate 2-r 90.6 0.41 1E-05 26.6 4.1 32 17-50 3-34 (307)
384 PRK05690 molybdopterin biosynt 90.6 0.53 1.4E-05 25.8 4.7 36 13-49 31-66 (245)
385 PRK00683 murD UDP-N-acetylmura 90.4 0.45 1.2E-05 26.3 4.2 32 17-50 6-37 (418)
386 PRK02705 murD UDP-N-acetylmura 90.4 0.6 1.5E-05 25.5 4.8 33 17-51 3-35 (459)
387 KOG1439 consensus 90.3 0.14 3.7E-06 29.8 1.6 39 14-54 4-42 (440)
388 TIGR01763 MalateDH_bact malate 90.3 0.36 9.2E-06 27.0 3.6 31 17-47 4-34 (308)
389 cd01487 E1_ThiF_like E1_ThiF_l 90.2 0.6 1.5E-05 25.5 4.7 32 17-49 2-33 (174)
390 PTZ00318 NADH dehydrogenase; P 90.2 0.36 9.1E-06 27.0 3.5 29 448-476 460-488 (514)
391 PRK08644 thiamine biosynthesis 90.2 0.68 1.7E-05 25.1 4.9 35 14-49 27-61 (209)
392 PRK09624 porD pyuvate ferredox 90.2 0.12 3E-06 30.4 1.0 46 496-541 18-71 (105)
393 PRK05708 2-dehydropantoate 2-r 90.1 0.45 1.1E-05 26.4 3.9 35 13-49 1-35 (305)
394 PRK08762 molybdopterin biosynt 90.0 0.67 1.7E-05 25.1 4.8 25 341-365 306-330 (379)
395 PRK04308 murD UDP-N-acetylmura 89.9 0.61 1.5E-05 25.4 4.5 33 16-50 7-39 (445)
396 PRK07878 molybdopterin biosynt 89.9 0.64 1.6E-05 25.3 4.6 36 13-49 41-76 (392)
397 COG1251 NirB NAD(P)H-nitrite r 89.8 1.5 3.7E-05 22.8 11.5 185 17-219 6-277 (793)
398 PRK05113 electron transport co 89.8 0.65 1.7E-05 25.3 4.6 65 470-543 101-165 (184)
399 cd05293 LDH_1 A subgroup of L- 89.8 0.88 2.2E-05 24.3 5.3 35 16-50 5-39 (312)
400 PRK01390 murD UDP-N-acetylmura 89.7 0.65 1.7E-05 25.2 4.6 33 15-49 10-42 (457)
401 PRK09477 napH quinol dehydroge 89.6 0.057 1.5E-06 32.6 -0.9 56 479-542 221-279 (287)
402 PRK07531 bifunctional 3-hydrox 89.6 0.61 1.6E-05 25.4 4.3 33 17-51 5-37 (489)
403 PTZ00082 L-lactate dehydrogena 89.3 0.91 2.3E-05 24.2 5.1 41 4-50 2-42 (322)
404 PRK01710 murD UDP-N-acetylmura 89.3 0.71 1.8E-05 25.0 4.5 34 15-50 15-48 (458)
405 PRK07411 hypothetical protein; 89.2 0.75 1.9E-05 24.8 4.5 36 13-49 37-72 (390)
406 PRK05600 thiamine biosynthesis 89.2 0.78 2E-05 24.7 4.6 36 13-49 40-75 (370)
407 COG4656 RnfC Predicted NADH:ub 89.1 0.06 1.5E-06 32.4 -1.1 141 353-536 269-419 (529)
408 cd00757 ThiF_MoeB_HesA_family 88.9 0.96 2.5E-05 24.1 4.9 36 13-49 20-55 (228)
409 pfam00899 ThiF ThiF family. Th 88.7 1 2.6E-05 23.9 5.0 33 16-49 3-35 (134)
410 PRK04690 murD UDP-N-acetylmura 88.7 0.81 2.1E-05 24.6 4.4 32 1-38 1-32 (468)
411 PRK08223 hypothetical protein; 88.6 0.86 2.2E-05 24.4 4.5 35 14-49 27-61 (287)
412 PRK07118 ferredoxin; Validated 88.6 0.22 5.5E-06 28.6 1.5 20 521-540 213-232 (276)
413 pfam03721 UDPG_MGDP_dh_N UDP-g 88.6 0.87 2.2E-05 24.4 4.5 33 16-50 2-34 (185)
414 PRK10194 ferredoxin-type prote 88.2 0.6 1.5E-05 25.5 3.5 69 472-541 90-159 (164)
415 COG3634 AhpF Alkyl hydroperoxi 88.1 0.45 1.1E-05 26.3 2.8 31 184-214 213-243 (520)
416 cd01339 LDH-like_MDH L-lactate 88.1 1 2.6E-05 23.9 4.6 33 17-50 1-33 (300)
417 PRK08328 hypothetical protein; 88.0 1.1 2.8E-05 23.7 4.7 35 13-48 26-60 (230)
418 PRK08268 3-hydroxybutyryl-CoA 87.9 0.89 2.3E-05 24.3 4.2 32 17-50 6-37 (503)
419 KOG3256 consensus 87.8 0.37 9.4E-06 27.0 2.2 51 495-552 118-174 (212)
420 TIGR01423 trypano_reduc trypan 87.7 0.29 7.3E-06 27.7 1.6 150 14-198 3-167 (486)
421 PRK10669 putative cation:proto 87.7 1.1 2.8E-05 23.6 4.6 16 339-354 328-343 (558)
422 PRK09288 purT phosphoribosylgl 87.6 2 5.1E-05 21.8 5.9 51 17-69 15-70 (395)
423 PRK06223 malate dehydrogenase; 87.3 1.4 3.6E-05 22.9 5.0 34 17-50 3-36 (312)
424 PRK00066 ldh L-lactate dehydro 87.2 1.9 4.7E-05 22.1 5.5 36 15-50 7-42 (315)
425 TIGR00562 proto_IX_ox protopor 87.2 1.2 3E-05 23.5 4.5 42 15-56 3-48 (556)
426 COG1748 LYS9 Saccharopine dehy 87.1 1.4 3.4E-05 23.0 4.8 33 16-49 3-35 (389)
427 PRK06249 2-dehydropantoate 2-r 87.1 1.2 3E-05 23.4 4.5 32 16-49 7-38 (313)
428 PRK05597 molybdopterin biosynt 87.1 1.3 3.2E-05 23.2 4.6 36 13-49 27-62 (355)
429 PRK13984 putative oxidoreducta 87.0 0.21 5.4E-06 28.6 0.6 39 318-362 565-603 (604)
430 cd00755 YgdL_like Family of ac 86.9 1.3 3.3E-05 23.2 4.6 35 14-49 11-45 (231)
431 PRK09326 F420H2 dehydrogenase 86.9 0.44 1.1E-05 26.4 2.2 16 319-334 250-265 (346)
432 cd01492 Aos1_SUMO Ubiquitin ac 86.8 1.6 4E-05 22.6 5.0 36 13-49 20-55 (197)
433 PRK08348 NADH-plastoquinone ox 86.7 0.36 9.1E-06 27.0 1.6 51 492-542 13-63 (111)
434 PRK08318 dihydropyrimidine deh 86.6 1.2 3.1E-05 23.3 4.3 64 478-547 338-403 (413)
435 PRK07066 3-hydroxybutyryl-CoA 86.5 1.3 3.2E-05 23.2 4.4 33 16-50 9-41 (321)
436 cd01337 MDH_glyoxysomal_mitoch 86.4 1.5 3.7E-05 22.8 4.7 32 17-48 3-35 (310)
437 pfam01210 NAD_Gly3P_dh_N NAD-d 86.4 1.5 3.9E-05 22.7 4.7 32 17-50 3-34 (159)
438 PRK12921 2-dehydropantoate 2-r 86.4 1.3 3.3E-05 23.2 4.4 31 17-49 3-33 (306)
439 TIGR02355 moeB molybdopterin s 86.3 1 2.5E-05 23.9 3.8 34 15-49 25-58 (240)
440 cd01065 NAD_bind_Shikimate_DH 86.2 1.5 3.7E-05 22.8 4.6 36 14-50 19-54 (155)
441 KOG1346 consensus 86.0 2.5 6.2E-05 21.2 7.2 49 311-359 466-519 (659)
442 COG0771 MurD UDP-N-acetylmuram 85.9 1.3 3.2E-05 23.2 4.1 35 15-51 8-42 (448)
443 TIGR02951 DMSO_dmsB dimethylsu 85.8 0.65 1.6E-05 25.3 2.6 42 493-536 70-111 (162)
444 TIGR00745 apbA_panE 2-dehydrop 85.6 1.4 3.6E-05 22.9 4.2 32 17-48 2-33 (332)
445 PRK00258 aroE shikimate 5-dehy 85.6 1.7 4.4E-05 22.3 4.7 68 123-201 75-142 (275)
446 cd00650 LDH_MDH_like NAD-depen 85.5 1.9 4.7E-05 22.1 4.8 34 17-50 1-37 (263)
447 PRK12862 malic enzyme; Reviewe 85.5 1.7 4.3E-05 22.4 4.6 41 10-50 188-229 (761)
448 PRK07232 malic enzyme; Reviewe 85.3 1.7 4.4E-05 22.3 4.6 41 10-50 182-223 (753)
449 pfam00056 Ldh_1_N lactate/mala 85.2 1.8 4.5E-05 22.2 4.6 35 16-50 2-37 (142)
450 PRK08306 dipicolinate synthase 85.2 1.8 4.5E-05 22.2 4.6 172 14-205 2-175 (296)
451 PTZ00325 malate dehydrogenase; 84.9 2 5.1E-05 21.9 4.7 34 15-48 2-36 (313)
452 TIGR01369 CPSaseII_lrg carbamo 84.8 1.5 3.9E-05 22.7 4.1 299 16-437 575-912 (1089)
453 PRK12861 malic enzyme; Reviewe 84.8 2 5E-05 21.9 4.7 40 10-50 183-224 (762)
454 cd00300 LDH_like L-lactate deh 84.5 2.1 5.5E-05 21.6 4.7 34 17-50 1-34 (300)
455 cd05290 LDH_3 A subgroup of L- 84.4 2.7 6.9E-05 20.9 5.2 34 17-50 2-35 (307)
456 TIGR02494 PFLE_PFLC glycyl-rad 84.2 0.34 8.6E-06 27.2 0.5 45 83-138 117-161 (305)
457 PTZ00117 malate dehydrogenase; 84.0 2.7 6.9E-05 20.9 5.1 34 16-50 3-36 (313)
458 PRK03562 glutathione-regulated 84.0 3 7.6E-05 20.6 5.3 46 344-391 517-564 (615)
459 KOG2495 consensus 83.9 0.51 1.3E-05 26.0 1.4 36 11-48 52-87 (491)
460 PRK03815 murD UDP-N-acetylmura 83.9 1.8 4.6E-05 22.2 4.1 33 17-51 3-35 (401)
461 cd05292 LDH_2 A subgroup of L- 83.6 3 7.7E-05 20.6 5.2 34 17-50 3-36 (308)
462 cd01483 E1_enzyme_family Super 83.5 2.8 7.1E-05 20.8 5.0 33 16-49 1-33 (143)
463 pfam01488 Shikimate_DH Shikima 83.1 2.6 6.5E-05 21.1 4.7 34 15-49 13-46 (134)
464 cd01489 Uba2_SUMO Ubiquitin ac 83.0 2.8 7E-05 20.9 4.8 31 17-48 2-32 (312)
465 PRK09623 vorD 2-ketoisovalerat 83.0 0.39 9.9E-06 26.8 0.4 27 514-540 44-70 (105)
466 PRK09625 porD pyruvate flavodo 83.0 0.7 1.8E-05 25.0 1.7 52 478-538 52-103 (130)
467 PRK06273 ferredoxin; Provision 82.8 0.6 1.5E-05 25.5 1.4 41 494-534 57-106 (163)
468 cd05294 LDH-like_MDH_nadp A la 82.7 3.1 7.9E-05 20.5 4.9 35 16-50 2-37 (309)
469 TIGR02279 PaaC-3OHAcCoADH 3-hy 82.7 1.2 3.1E-05 23.3 2.9 36 14-51 5-40 (508)
470 PRK11064 wecC UDP-N-acetyl-D-m 82.5 2.6 6.5E-05 21.1 4.5 32 17-50 6-37 (415)
471 PRK06718 precorrin-2 dehydroge 82.2 2.7 6.8E-05 21.0 4.5 31 15-47 11-41 (202)
472 pfam03435 Saccharop_dh Sacchar 82.2 2.3 5.8E-05 21.4 4.1 34 17-50 1-34 (384)
473 cd05291 HicDH_like L-2-hydroxy 82.2 3.5 9E-05 20.1 5.1 34 17-50 3-36 (306)
474 cd01485 E1-1_like Ubiquitin ac 82.0 3.1 8E-05 20.5 4.8 36 13-49 18-53 (198)
475 PRK12387 formate hydrogenlyase 81.9 0.39 1E-05 26.8 0.1 39 492-530 77-124 (178)
476 COG0686 Ald Alanine dehydrogen 81.9 1.6 4.1E-05 22.5 3.2 63 261-328 234-297 (371)
477 COG3383 Uncharacterized anaero 81.9 0.99 2.5E-05 24.0 2.2 14 323-336 651-664 (978)
478 PRK07502 cyclohexadienyl dehyd 81.5 2.5 6.4E-05 21.2 4.1 64 331-396 221-289 (307)
479 cd01486 Apg7 Apg7 is an E1-lik 81.4 2.6 6.5E-05 21.1 4.1 32 17-49 2-33 (307)
480 PRK12550 shikimate 5-dehydroge 81.3 2.7 6.9E-05 20.9 4.2 69 121-201 74-142 (272)
481 PRK07569 bidirectional hydroge 81.1 2.5 6.4E-05 21.2 4.0 58 476-539 140-208 (236)
482 PRK05562 precorrin-2 dehydroge 80.9 3.2 8.1E-05 20.4 4.5 32 14-47 24-55 (222)
483 pfam00732 GMC_oxred_N GMC oxid 80.8 2.9 7.3E-05 20.8 4.2 68 119-196 126-194 (218)
484 cd01076 NAD_bind_1_Glu_DH NAD( 80.8 3.8 9.8E-05 19.9 4.9 33 14-48 31-64 (227)
485 cd01484 E1-2_like Ubiquitin ac 80.7 3.3 8.4E-05 20.4 4.5 31 17-48 2-32 (234)
486 PRK06719 precorrin-2 dehydroge 80.3 3.4 8.6E-05 20.3 4.5 30 15-46 14-43 (157)
487 TIGR03026 NDP-sugDHase nucleot 80.2 3.3 8.3E-05 20.4 4.4 32 17-50 3-34 (411)
488 PRK01368 murD UDP-N-acetylmura 80.0 2.5 6.4E-05 21.2 3.7 30 16-48 8-37 (450)
489 TIGR02176 pyruv_ox_red pyruvat 80.0 0.52 1.3E-05 25.9 0.2 397 41-536 319-770 (1194)
490 pfam09257 BCMA-Tall_bind BCMA, 80.0 0.79 2E-05 24.7 1.1 23 473-504 16-38 (39)
491 PRK00094 gpsA NAD(P)H-dependen 79.9 3.1 7.9E-05 20.5 4.2 32 17-50 4-35 (325)
492 COG1179 Dinucleotide-utilizing 79.8 3.2 8.1E-05 20.5 4.2 32 17-49 33-64 (263)
493 COG0281 SfcA Malic enzyme [Ene 79.7 3.7 9.6E-05 20.0 4.5 31 17-48 202-234 (432)
494 PRK09310 aroDE bifunctional 3- 79.2 3.6 9.3E-05 20.0 4.3 29 17-47 335-363 (477)
495 PRK08220 2,3-dihydroxybenzoate 79.0 4.4 0.00011 19.4 5.4 62 1-70 1-68 (253)
496 COG1145 NapF Ferredoxin [Energ 78.5 0.5 1.3E-05 26.0 -0.3 47 494-540 35-82 (99)
497 PRK12548 shikimate 5-dehydroge 78.5 4.4 0.00011 19.5 4.5 30 17-47 129-158 (289)
498 COG1893 ApbA Ketopantoate redu 78.2 3.6 9.1E-05 20.1 4.0 31 17-49 3-33 (307)
499 PRK05086 malate dehydrogenase; 78.1 3.9 0.0001 19.8 4.2 30 17-46 3-34 (312)
500 COG0039 Mdh Malate/lactate deh 78.0 4.4 0.00011 19.5 4.4 30 17-46 3-32 (313)
No 1
>KOG2415 consensus
Probab=100.00 E-value=0 Score=1310.80 Aligned_cols=544 Identities=47% Similarity=0.866 Sum_probs=527.0
Q ss_pred HHCCCCHHCCCCCEEEECCCHHHHHHHHHHHHC----CCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCC
Q ss_conf 102420010364779998976899999999980----8997399997867789864027403336788867872641488
Q gi|254781024|r 4 CDILHNKDVFEYDVVIIGAGPAGLAAAIRCKQI----NPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGH 79 (554)
Q Consensus 4 ~~~~~~re~meyDVvIVGaGPAG~saA~~La~~----g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~ 79 (554)
.+..||||+.+|||+||||||||++|||+|+|+ +++++|||+||++++|.|++||+|++|.+|+||||||++ +++
T Consensus 66 ~~v~~~R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke-~~a 144 (621)
T KOG2415 66 LDVNMERESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKE-DGA 144 (621)
T ss_pred HCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEECCEEECCCHHHHHCCCHHH-CCC
T ss_conf 3043201100405899888815678888899888760783689999612314771321305065436665844121-387
Q ss_pred CCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEE
Q ss_conf 54322436699997799767736543565446788268888898999999998749533068224347762776201454
Q gi|254781024|r 80 PFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGIL 159 (554)
Q Consensus 80 pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~ 159 (554)
|++++|++|+|+||++.++|++|. |..|.|+|||+|++++|.+||.++||++||||+++++|++++|++||.|+|+.
T Consensus 145 pl~t~vT~d~~~fLt~~~~i~vPv---~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGia 221 (621)
T KOG2415 145 PLNTPVTSDKFKFLTGKGRISVPV---PSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIA 221 (621)
T ss_pred CCCCCCCCCCEEEECCCCEEECCC---CCCCCCCCCEEEEHHHHHHHHHHHHHHHCCEECCCCCHHHEEECCCCCEEEEE
T ss_conf 445422203044543674030687---76213678679888999999877788617143256202223676799676576
Q ss_pred ECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 12432443466578756302677425786066443255421122489988889899889888875165667888089950
Q gi|254781024|r 160 TGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSI 239 (554)
Q Consensus 160 t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~ 239 (554)
|+|.|+.|+|.+|++|++||+|+||+||+||||+|+|+++++.+|+||.+++||+|++|+||+|+++++.+++|.+.|++
T Consensus 222 T~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglGlKEvWei~~~~~~pG~v~HT~ 301 (621)
T KOG2415 222 TNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGLKEVWEIDPENHNPGEVAHTL 301 (621)
T ss_pred ECCCCCCCCCCCCCCCCCCCEECCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEECCCCCEEEECCHHHCCCCCEEEEC
T ss_conf 04544167898500000231111305897021442458999987374458875300245311574375456976234311
Q ss_pred CCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCC
Q ss_conf 43476876641257664798059999832666566889889999986080045650388263035134005421248742
Q gi|254781024|r 240 GWPLDMNTSGGGFVYHFDDNLVSIGFVLHLDYRNPWISAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKL 319 (554)
Q Consensus 240 g~~~~~~~~gggwiy~~~d~~~~iG~v~~ld~~~~~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~ 319 (554)
|||+..+++||+|+||+.|+++.||+|++|||+||+++|+++||++|+||.|++.|+||+++.|+||++++||+||+|++
T Consensus 302 GwPl~~~tYGGsFlYh~~d~~VavGlVVgLdY~NP~lsP~~EFQk~K~hP~i~~vleGgk~i~YgARaLNEGGfQsiPkl 381 (621)
T KOG2415 302 GWPLDNDTYGGSFLYHFNDPLVAVGLVVGLDYKNPYLSPYKEFQKMKHHPSISKVLEGGKRIAYGARALNEGGFQSIPKL 381 (621)
T ss_pred CCCCCCCCCCCEEEEECCCCEEEEEEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHCCCCEEEEHHHHHCCCCCCCCCCC
T ss_conf 67666775474568971897289999997247998778789987740184156552486065301234345774447524
Q ss_pred CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 308879961232331366435226899999999999999874588653----0367899864204667888742256688
Q gi|254781024|r 320 SFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHD----DPIEIEDSWRQTQIGKDLWIIRNIKPLL 395 (554)
Q Consensus 320 ~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~----~l~~Ye~~~~~s~~~~el~~~rn~~~~~ 395 (554)
+|||++||||+|||+|.+++||+|+||+|||+|||+|++++...+.++ .+..|++.+|+||++||||.+||+||+|
T Consensus 382 ~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~k~~~~~~~~Ye~nlkds~V~KeLysvRNirPsf 461 (621)
T KOG2415 382 VFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQSKMAGLDPTTYEENLKDSYVWKELYSVRNIRPSF 461 (621)
T ss_pred CCCCCEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 46883376415022114112650255551035799999987457521211358236777620348899888761457433
Q ss_pred H-HHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCC
Q ss_conf 7-616046899989999885422656666567788896540005643744487887764211232111037889988862
Q gi|254781024|r 396 S-RFGVFIGLSLGLMDIWIQKILGFSFLGTLKHHKMDSCSLEAASQHKKIDYPKPDGKLTFDIMSSLFLAKVKYVKEQPM 474 (554)
Q Consensus 396 ~-~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~kpdg~~~fd~~~~v~~s~~~h~~~qp~ 474 (554)
+ ..|.+.|+++++++.+ +++|..||||+|...||+.|++|+++++|.||||||+||||.++||++|||||+|||||
T Consensus 462 ~~~lG~ygGmiySgi~~~---~lkG~~PwTLkh~~~D~e~l~pa~k~~pI~YPKPDg~lSFDlltSvs~sgTnH~~dqP~ 538 (621)
T KOG2415 462 HGKLGLYGGMIYSGIFSY---VLKGKVPWTLKHGKNDHEALKPASKYKPIVYPKPDGVLSFDLLTSVSRSGTNHDEDQPA 538 (621)
T ss_pred CCCCCCCCCHHHHHHHHH---HHCCCCCEEECCCCCCHHHCCCHHHCCCCCCCCCCCEEEEEECCHHHCCCCCCCCCCCC
T ss_conf 444455351023464887---54576643532378752213615328875357998647774022322057777778874
Q ss_pred EEEEECCCCCHHCCHHHHCCHHHCCCCCEEEEEEECCC---CEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 17961755440017354178132135860068896599---705665156667047573006888862536798887998
Q gi|254781024|r 475 HLLIKDKDLQKKSELRIYSGPSMRYCPAGVYEWHQNND---ENNYIIHAQNCIHCKACVIKDPNQNIEWNPPQGGDGPHY 551 (554)
Q Consensus 475 Hl~~~~~~~~~~~~~~~~~~p~~~~cpa~vye~~~~~~---~~~~~i~~~nc~hcktc~ik~p~~~i~w~~p~gg~gp~y 551 (554)
||+++|++++.++|+++|.+||+|||||||||||.++. .++||||+||||||||||||||.|||+|++||||+||.|
T Consensus 539 HL~l~~~~ip~~~nf~~y~gpE~rfCPAgVYEyV~dE~~~~~krlqINaQNCiHCKtCDIKdP~QnI~W~vPeGGgGP~Y 618 (621)
T KOG2415 539 HLTLRDDDIPVKVNFPVYKGPESRFCPAGVYEYVPDEAGPVGKRLQINAQNCIHCKTCDIKDPKQNINWVVPEGGGGPKY 618 (621)
T ss_pred EEEECCCCCCHHCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCEEEECCCCCEECCCCCCCCCCCCCEEECCCCCCCCCC
T ss_conf 36506888630027521148043257732046454445887625787253630033256657223860667688898775
Q ss_pred CCC
Q ss_conf 888
Q gi|254781024|r 552 VDM 554 (554)
Q Consensus 552 ~~m 554 (554)
+.|
T Consensus 619 ~~m 621 (621)
T KOG2415 619 TLM 621 (621)
T ss_pred CCC
T ss_conf 669
No 2
>PRK10015 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=692.66 Aligned_cols=377 Identities=24% Similarity=0.440 Sum_probs=345.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEEE
Q ss_conf 64779998976899999999980899739999786778986402740333678886787264148854322436699997
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFL 93 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~l 93 (554)
+|||||||||||||+||++|||+| ++||||||+++||+|+|||+++++++|++|||+|.+ .+|++++|++++++|+
T Consensus 5 ~fDVIVVGaGPAG~sAA~~LAk~G--l~VlllErg~~~G~k~~sGgvl~~~~le~liP~~~~--~aP~er~V~~~~~~~l 80 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAG--LDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAA--SAPVERKVTREKISFL 80 (429)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCEECHHHHHHHCCCCCC--CCCCCEEEEEEEEEEE
T ss_conf 158899996889999999998779--919999678879985512637416278886889644--7985215898789998
Q ss_pred CCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 79976773654356544678826888889899999999874953306822434776277620145412432443466578
Q gi|254781024|r 94 NAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGK 173 (554)
Q Consensus 94 ~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~ 173 (554)
++++++++++...++.++++++|+|+|++||+||+++|+++||+|+++++|++++. ++++++||++++.
T Consensus 81 ~~~~~~~i~~~~~~~~~~~~~~y~v~R~~fD~WLa~~Ae~aGa~i~~g~~v~~l~~-e~g~V~GV~tg~~---------- 149 (429)
T PRK10015 81 TEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVR-EGNKVTGVQAGDD---------- 149 (429)
T ss_pred CCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEEECCCEEEEEEE-ECCEEEEEECCCC----------
T ss_conf 78980666765678676677865989999999999999975999977958999996-2998999987982----------
Q ss_pred CCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC--------CCCEEEEEECCCCCC
Q ss_conf 756302677425786066443255421122489988889899889888875165667--------888089950434768
Q gi|254781024|r 174 HYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYH--------RRGLALHSIGWPLDM 245 (554)
Q Consensus 174 ~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~--------~~G~~~h~~g~~~~~ 245 (554)
+++|++||+|||++|.|+|++ +|++..+||+|++|+||+|+++++.. .+|.++++.||+..
T Consensus 150 ------~l~A~vVI~AdGvns~la~~l----gl~~~~~p~~~~lgvKEv~~l~~~~ie~rf~l~~~~G~~~~~~G~~~~- 218 (429)
T PRK10015 150 ------ILEANVVILADGVNSMLGRSL----GMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSD- 218 (429)
T ss_pred ------EEEEEEEEEECCCCHHHHHHH----CCCCCCCHHHCCEEEEEEEECCHHHHHHCCCCCCCCCEEEECCCCCCC-
T ss_conf ------688658998156227999981----999889954610689998517976732103645567728871688888-
Q ss_pred CCCCCEEEEECCCCEEEEEEEECC-CCCCCCCCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCCCE
Q ss_conf 766412576647980599998326-6656688988999998608004565038826303513400542124874230887
Q gi|254781024|r 246 NTSGGGFVYHFDDNLVSIGFVLHL-DYRNPWISAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKLSFPGG 324 (554)
Q Consensus 246 ~~~gggwiy~~~d~~~~iG~v~~l-d~~~~~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~g~ 324 (554)
+..||||+|+++|+ ++||+|+++ |+.++..+++++||+||+||.|+++++++++++|+||+||+|||+++|++++||+
T Consensus 219 ~~~GgGflYtn~d~-vSiG~v~~l~d~~~~~~~~~~~le~fK~hP~i~~ll~gG~~~eY~A~~IpeGG~~~iPkl~~dG~ 297 (429)
T PRK10015 219 GLMGGGFLYTNKDS-ISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNDGV 297 (429)
T ss_pred CCCCEEEEECCCCC-EEEEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCE
T ss_conf 98751688618975-89999985343234688979999998639313455269879886254358787557875225986
Q ss_pred EEECCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
Q ss_conf 996123233136--643522689999999999999987458865-30367899864204667888742256688761604
Q gi|254781024|r 325 SLIGCAAGFVNL--LRIKGSHNAIISGMLAAEKIVERLSNGKKH-DDPIEIEDSWRQTQIGKDLWIIRNIKPLLSRFGVF 401 (554)
Q Consensus 325 lLvGDAAG~vnP--~~g~GI~~Am~SG~lAAEai~eal~~g~~~-~~l~~Ye~~~~~s~~~~el~~~rn~~~~~~~~g~~ 401 (554)
+||||||||+++ ++++|||+||+||++|||+|++|++++|+| +.|..|+++|++||++|||+++||+.+.++. -.+
T Consensus 298 llvGDAAGfv~n~~~~~~Gi~~Am~SG~lAAeai~~A~~~~d~s~~~L~~Y~~~l~~S~v~kdl~~~r~~~~~~~~-~~~ 376 (429)
T PRK10015 298 MIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRDMQHFRKIPALMEN-PRL 376 (429)
T ss_pred EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHCC-CHH
T ss_conf 9995176775687742211799999999999999999970898610299999998737699999997297244349-407
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 68999899998854226
Q gi|254781024|r 402 IGLSLGLMDIWIQKILG 418 (554)
Q Consensus 402 ~g~~~~~~~~~~~~~~~ 418 (554)
...+...+....+.+|.
T Consensus 377 ~~~yp~~~~~~~~~~~~ 393 (429)
T PRK10015 377 FSQYPRMVADIMNDMFT 393 (429)
T ss_pred HHHHHHHHHHHHHHHEE
T ss_conf 88879999999997531
No 3
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=100.00 E-value=0 Score=656.20 Aligned_cols=390 Identities=21% Similarity=0.366 Sum_probs=346.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEEE
Q ss_conf 64779998976899999999980899739999786778986402740333678886787264148854322436699997
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFL 93 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~l 93 (554)
+|||||||||||||+||++|||+| ++||||||+.+||+|++||++++|++|++|||+|.+. +|+++.|++++++|+
T Consensus 5 ~fDVIVVGAGPAGsaAA~~LA~~G--l~VllLEKg~~pG~k~~sG~~l~~~~l~~liP~~~~~--aP~er~V~~~~~~~l 80 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREG--AQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADS--APVERLITHEKLAFM 80 (428)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCCCCEECCCHHHHHCCCCHHC--CCCCEEEEEEEEEEE
T ss_conf 577899996889999999998789--9099996788899876117540520688868784102--986247898689998
Q ss_pred CCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 79976773654356544678826888889899999999874953306822434776277620145412432443466578
Q gi|254781024|r 94 NAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGK 173 (554)
Q Consensus 94 ~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~ 173 (554)
++++.+++++...+....++++|+|+|++||+||+++|+++||+|+++++|++++. ++|+++||++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~y~V~R~~FD~wLa~~Ae~aGA~i~~g~~V~~li~-~~GrVvGV~~~------------ 147 (428)
T PRK10157 81 TEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQ-RDGKVVGVEAD------------ 147 (428)
T ss_pred CCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEEECCCEEEEEEE-ECCEEEEEECC------------
T ss_conf 68984556777877566887618989999999999999980988986858100143-48979999758------------
Q ss_pred CCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC--------CCCCEEEEEECCCCCC
Q ss_conf 75630267742578606644325542112248998888989988988887516566--------7888089950434768
Q gi|254781024|r 174 HYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQY--------HRRGLALHSIGWPLDM 245 (554)
Q Consensus 174 ~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~--------~~~G~~~h~~g~~~~~ 245 (554)
|.+++|++||+|||++|.|++++ ++++..+|++|++|+||+|+++++. .++|.++++.||+..
T Consensus 148 ----G~~i~A~vVI~AdGv~s~la~~~----Gl~~~~~p~~~~~gvKE~~~lp~~~i~~rf~l~~~eG~~~~~~G~~~~- 218 (428)
T PRK10157 148 ----GDVIEAKTVILADGVNSILAEKL----GMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTD- 218 (428)
T ss_pred ----CCEEEEEEEEEECCCHHHHHHHH----CCCCCCCCCCEEEEEEEEEECCHHHHHHHCCCCCCCCEEEECCCCCCC-
T ss_conf ----95898717999447217779872----888778874128999999964976643320557888759983568878-
Q ss_pred CCCCCEEEEECCCCEEEEEEEECCCC-CCCCCCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCCCE
Q ss_conf 76641257664798059999832666-56688988999998608004565038826303513400542124874230887
Q gi|254781024|r 246 NTSGGGFVYHFDDNLVSIGFVLHLDY-RNPWISAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKLSFPGG 324 (554)
Q Consensus 246 ~~~gggwiy~~~d~~~~iG~v~~ld~-~~~~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~g~ 324 (554)
+..||||+|++++ .++||+|+++++ .+...+++++||+||+||.|+++++++++++|++|+||+||++++|++++||+
T Consensus 219 g~~GgGflytn~~-~vsiG~v~~l~~~~~~~~~~~~~le~fk~hP~i~~ll~gg~~iey~a~~ipegG~~~~P~l~~dG~ 297 (428)
T PRK10157 219 GLMGGGFLYTNEN-TLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGV 297 (428)
T ss_pred CCCCEEEEECCCC-EEEEEEEEEHHHCCCCCCCHHHHHHHHHHCCCHHHHCCCCEEEEEEEEECCCCCCCCCCCEECCCE
T ss_conf 9863289975897-089988851221454457979999988529505652589779887336627765456884853998
Q ss_pred EEECCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
Q ss_conf 9961232331366--435226899999999999999874588653-0367899864204667888742256688761604
Q gi|254781024|r 325 SLIGCAAGFVNLL--RIKGSHNAIISGMLAAEKIVERLSNGKKHD-DPIEIEDSWRQTQIGKDLWIIRNIKPLLSRFGVF 401 (554)
Q Consensus 325 lLvGDAAG~vnP~--~g~GI~~Am~SG~lAAEai~eal~~g~~~~-~l~~Ye~~~~~s~~~~el~~~rn~~~~~~~~g~~ 401 (554)
|||||||||++|. +++|||+||+||++|||+|++|+++||+|+ .|..|+++|++| ++|||++.|++...++. ..+
T Consensus 298 llvGDAAG~v~n~~~~~~Gi~~Am~SG~lAAeai~~A~~~~d~S~~~L~~Y~~~l~~s-v~~dl~~~~~~p~~~~~-~~~ 375 (428)
T PRK10157 298 LIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESG-PLRDMRMYQKLPAFLDN-PRM 375 (428)
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHCC-CHH
T ss_conf 9997077775676752221999999999999999999973997678899999998878-89999987353665349-406
Q ss_pred HHHHHHHHHHHHHHHC--CCCCCCCCCCCCCCH
Q ss_conf 6899989999885422--656666567788896
Q gi|254781024|r 402 IGLSLGLMDIWIQKIL--GFSFLGTLKHHKMDS 432 (554)
Q Consensus 402 ~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~ 432 (554)
...+...+....+.+| .+..++++++...+|
T Consensus 376 f~~yp~~~~~~~~~~f~v~g~~~~~~~~~~~~~ 408 (428)
T PRK10157 376 FSGYPELAVGVARDLFTIDGSAPELMRKKILRH 408 (428)
T ss_pred HHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHH
T ss_conf 888799999999850896898985478999988
No 4
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=100.00 E-value=0 Score=520.13 Aligned_cols=394 Identities=34% Similarity=0.522 Sum_probs=341.3
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEE
Q ss_conf 03647799989768999999999808997399997867789864027403336788867872641488543224366999
Q gi|254781024|r 12 VFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYW 91 (554)
Q Consensus 12 ~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~ 91 (554)
+|+|||+|||||||||+||++|||.| ++|+||||+.+||+|++||+.+.++++++++|+|.+. +.+.|+.+.++
T Consensus 1 ~~~~DVvIVGaGPAGs~aA~~la~~G--~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~----i~~~v~~~~~~ 74 (396)
T COG0644 1 MMEYDVVIVGAGPAGSSAARRLAKAG--LDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE----IERKVTGARIY 74 (396)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCHHH----HEEEEEEEEEE
T ss_conf 94788999897889999999998579--9299996578899987676667877887745552133----21332026997
Q ss_pred EECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCC
Q ss_conf 97799767736543565446788268888898999999998749533068224347762776201454124324434665
Q gi|254781024|r 92 FLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQ 171 (554)
Q Consensus 92 ~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~ 171 (554)
+++....+..+. ..+|+++|.+||+||+++|+++|++++.+++++.+..++++.++++.+++
T Consensus 75 ~~~~~~~~~~~~---------~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~--------- 136 (396)
T COG0644 75 FPGEKVAIEVPV---------GEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGD--------- 136 (396)
T ss_pred CCCCEEEEECCC---------CCEEEEEHHHHHHHHHHHHHHHCCEEEECCEEEEEEEECCCEEEEEECCC---------
T ss_conf 157426874488---------85799888998899999999839899818788999981781699995686---------
Q ss_pred CCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCE
Q ss_conf 78756302677425786066443255421122489988889899889888875165667888089950434768766412
Q gi|254781024|r 172 GKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMNTSGGG 251 (554)
Q Consensus 172 ~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~~~ggg 251 (554)
++++||+||+|||++|.++++++.+ ...|+.++++++|+|.++ .++...+++.++....+.||+
T Consensus 137 -------~e~~ak~vI~AdG~~~~l~~~lg~~-----~~~~~~~~~~~~e~~~~~----~~~~~~~~~~~~~~~~~~Gy~ 200 (396)
T COG0644 137 -------DEVRAKVVIDADGVNSALARKLGLK-----DRKPEDYAIGVKEVIEVP----DDGDVEEFLYGPLDVGPGGYG 200 (396)
T ss_pred -------EEEECCEEEECCCCCHHHHHHHCCC-----CCCCCEEEEEEEEEEECC----CCCCEEEEEEECCCCCCCCEE
T ss_conf -------6996189998848576889872887-----778743689999998279----887505899833666788579
Q ss_pred EEEECCCCEEEEEEEECCCCCCCCCCHH-HHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 5766479805999983266656688988-999998608004565038826303513400542124874230887996123
Q gi|254781024|r 252 FVYHFDDNLVSIGFVLHLDYRNPWISAY-EELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKLSFPGGSLIGCA 330 (554)
Q Consensus 252 wiy~~~d~~~~iG~v~~ld~~~~~~~~~-~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~g~lLvGDA 330 (554)
|+||++++.++||+++.+++ +...+. +++++|++||.+.+.+.+++.+++.++.+|++++.+.| ++++|++|||||
T Consensus 201 wifP~~~~~~~VG~~~~~~~--~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ip~~g~~~~~-~~~~~~~lvGDA 277 (396)
T COG0644 201 WIFPLGDGHANVGIGVLLDD--PSLSPFLELLERFKEHPAIRKLLLGGKILEYAAGGIPEGGPASRP-LVGDGVLLVGDA 277 (396)
T ss_pred EEEECCCCEEEEEEEEECCC--CCCCHHHHHHHHHHHCCCCCHHCCCCCEEEEEEEEEECCCCCCCC-EECCCEEEEECC
T ss_conf 99988997599999996477--664336999999861644300025761775300054137755562-052898999846
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Q ss_conf 23313664352268999999999999998745886530367899864204667888742256688761604689998999
Q gi|254781024|r 331 AGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEIEDSWRQTQIGKDLWIIRNIKPLLSRFGVFIGLSLGLMD 410 (554)
Q Consensus 331 AG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~~Ye~~~~~s~~~~el~~~rn~~~~~~~~g~~~g~~~~~~~ 410 (554)
||||||++|+||++||.||++|||+|.++++.+ .+.|.+|+++|++++..++++..|+.+.... .....+....+
T Consensus 278 Ag~v~p~~g~Gi~~A~~sg~~Aae~i~~~~~~~--~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 352 (396)
T COG0644 278 AGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGG--EEALAEYERLLRKSLAREDLKSLRLLKLLLR---LLDRTLPALIK 352 (396)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_conf 667488655773999999999999998642224--4679999999988888999987887998876---32556899999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCHHHCCCHHHCCCCCCCCCCCCCC-CCCCCCHHCCCCCC
Q ss_conf 98854226566665677888965400056437444878877642-11232111037889
Q gi|254781024|r 411 IWIQKILGFSFLGTLKHHKMDSCSLEAASQHKKIDYPKPDGKLT-FDIMSSLFLAKVKY 468 (554)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~kpdg~~~-fd~~~~v~~s~~~h 468 (554)
.+ .. .|...+.....+..+.++++++.++ ++++.+++++.+.|
T Consensus 353 ~~----~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 396 (396)
T COG0644 353 LL----AD-----------KDLLGLIKKYLRKLILYPLLKGVLARFDLLKSVKRSLTAL 396 (396)
T ss_pred HH----HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 87----42-----------2144444444333445554531144899998876665059
No 5
>TIGR02032 GG-red-SF geranylgeranyl reductase family; InterPro: IPR011777 This entry includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates..
Probab=100.00 E-value=0 Score=375.47 Aligned_cols=322 Identities=22% Similarity=0.263 Sum_probs=242.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC-CCCCCEECHHHHHHHCCCHH---HHCCCCCCCEEEEE--
Q ss_conf 4779998976899999999980899739999786778986-40274033367888678726---41488543224366--
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAH-ILSGAIIDPIGIDSLLPRWR---EDKGHPFHTVVKRD-- 88 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~-i~sG~vl~p~aL~eL~Pd~~---e~~g~pl~~~v~~d-- 88 (554)
|||||||||||||+||++||+.| ++|+||||+++||.. +.||+.|.++.+..|-.... .....|....+...
T Consensus 1 yDVvvvGaGPaG~~aA~~~A~~G--~~Vllle~~~~~r~P~k~CGg~~~~~~~~~~~~~~~d~~~L~~~P~~~~~~~~~~ 78 (343)
T TIGR02032 1 YDVVVVGAGPAGSSAAYRLAKKG--LRVLLLEKKSFPRYPGKPCGGALSPRVLEELVLPGPDEYALKDIPKELIVNEVRT 78 (343)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CEEEEEEEHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 93899827746899999999569--7388985045079886005776670013113678888613014774345420011
Q ss_pred ---EEEEECCCC-CEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCC
Q ss_conf ---999977997-6773654356544678826888889899999999874953306822434776277620145412432
Q gi|254781024|r 89 ---LYWFLNAQR-SIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKG 164 (554)
Q Consensus 89 ---~~~~l~~~~-~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G 164 (554)
.-.+..++. .+..+.. ...-....++++|..||+.|+++|+++|++++.+++++.+...+ ..++.+.++|.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~R~~fD~~L~~~A~~~G~~~~~~~~~~~~~~~~-~~~~~~~~~dd~ 154 (343)
T TIGR02032 79 LFNGARIISPNGDKVEIPIE---ELAFTEEAYVIDRDAFDEFLAERAQEAGAELRLGTTVLDVEIED-KVVVEVRGGDDE 154 (343)
T ss_pred EECCCEEEECCCCEEEECCH---HHCCCCEEEEEECHHHHHHHHHHHHHCCCEEEECCEEEEEEECC-CEEEEEECCCCC
T ss_conf 00143388078632210222---11247437898526741899999975780675263761127618-368997268675
Q ss_pred CCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHH-HHHHHCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCEEEEEECCC
Q ss_conf 4434665787563026774257860664432554-2112248998888989988988887516-5667888089950434
Q gi|254781024|r 165 KNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTR-QLIERYSLMDGRQPQKFGLGIKELWKIK-PQYHRRGLALHSIGWP 242 (554)
Q Consensus 165 ~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak-~l~~~~~l~~~~~p~~~~~gvke~~ei~-~~~~~~G~~~h~~g~~ 242 (554)
...++.||+||+|||.+|.+++ +++.-..++.+..+..++..+.+..+.+ .+..++..+...+.+.
T Consensus 155 ------------~~~~~~a~~vigADG~~S~~~~~~lg~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~D~v~v~~~~~ 222 (343)
T TIGR02032 155 ------------SKGEVTAKIVIGADGARSIVAKKKLGSSATLRENKEKRELGVALRAEVEMPVEEEVDEDFVEVYIDRG 222 (343)
T ss_pred ------------CCCEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHEEEEEEEEECCCCCCCCCCCEEEEEECCC
T ss_conf ------------66046255899716887843212478778777775412024554677306767623574589997880
Q ss_pred CC-CCCCCCEEEEECCCCEEEEEEEEC--CCCCCCCCCHHHHHHHHH-HCCCHHHHHCC--CCEECCCCEE---CCCCCC
Q ss_conf 76-876641257664798059999832--666566889889999986-08004565038--8263035134---005421
Q gi|254781024|r 243 LD-MNTSGGGFVYHFDDNLVSIGFVLH--LDYRNPWISAYEELQRFK-THPDIRIIFTE--GERLEYGARV---ISEGGW 313 (554)
Q Consensus 243 ~~-~~~~gggwiy~~~d~~~~iG~v~~--ld~~~~~~~~~~~lq~fk-~hp~i~~~l~g--g~~~~yga~~---ip~gg~ 313 (554)
+. .=+.||+|+||.+|.++|||++.. .++.....++.+.|++|. .++.-.+.|.. ....+...+. ||.+..
T Consensus 223 ~~qrv~ggY~W~FP~G~~~~nvG~g~~~~~~~~~~~~~~~~~l~~f~~~~~~~~~~l~~~D~~~~~~~~~~~WliP~~~~ 302 (343)
T TIGR02032 223 LSQRVPGGYGWVFPKGDGTANVGVGSLPETDAAEEGEDLKKYLKDFLAARPVAKEDLKNEDAVEVEVIGAPKWLIPIRRP 302 (343)
T ss_pred EEEECCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCEEEEECCCC
T ss_conf 13323787068854888689999875365112335566789999999964886136530477000001331345414863
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 2487423088799612323313664352268999999999999
Q gi|254781024|r 314 QSVPKLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKI 356 (554)
Q Consensus 314 ~s~pk~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai 356 (554)
. .+++..|+||+|||||+|||++|+||.+||.||++|||+|
T Consensus 303 ~--~~~~~~~~ll~GDAAg~V~P~~GgGI~yA~~~G~~Aa~~~ 343 (343)
T TIGR02032 303 D--EKLVRGNVLLVGDAAGFVKPLTGGGIYYAMRAGRVAAEVV 343 (343)
T ss_pred C--CCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 2--2113488899933767226755671789999999862159
No 6
>TIGR02023 BchP-ChlP geranylgeranyl reductase; InterPro: IPR010253 This entry represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll . It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).; GO: 0045550 geranylgeranyl reductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=100.00 E-value=0 Score=378.21 Aligned_cols=325 Identities=20% Similarity=0.253 Sum_probs=244.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECC-CCCCCCCCCCCEECHHHHHHH-CCCHHHHCCCCCCCEEEEEEEEE
Q ss_conf 4779998976899999999980899739999786-778986402740333678886-78726414885432243669999
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKS-AEVGAHILSGAIIDPIGIDSL-LPRWREDKGHPFHTVVKRDLYWF 92 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~-~~pG~~i~sG~vl~p~aL~eL-~Pd~~e~~g~pl~~~v~~d~~~~ 92 (554)
|||+||||||||.|||..|||.| ++|+||||. .-+ | -||+.+.|..++|+ ||+- -+.+.|+.-++.
T Consensus 1 ydV~viGGGPsGA~AAe~LA~~G--~~tiLlER~l~~~--K-PCGGAIPp~li~EFdiP~~------li~~r~~~~~mi- 68 (408)
T TIGR02023 1 YDVAVIGGGPSGAAAAETLARAG--IETILLERALSRI--K-PCGGAIPPCLIEEFDIPDD------LIDRRVRKARMI- 68 (408)
T ss_pred CCEEEEECCCCHHHHHHHHHHCC--CEEEEEEHHHCCC--C-CCCCCCCHHHCCCCCCCHH------HHHHHHCEEEEE-
T ss_conf 96789816850689999998649--7488630243265--8-8888665110123578888------997320064677-
Q ss_pred ECCC-CCEECCCCCCCCCCCCCCCEE--EEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCC--CEEEEEE-CCCCCC
Q ss_conf 7799-767736543565446788268--888898999999998749533068224347762776--2014541-243244
Q gi|254781024|r 93 LNAQ-RSIQIPHFCLPDFMDNKEHYI--VSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKG--EALGILT-GEKGKN 166 (554)
Q Consensus 93 l~~~-~~~~~p~~~~p~~~~~~g~yi--v~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g--~vvgv~t-~~~G~~ 166 (554)
+++ ..+..+. -..|+-++.|| |+|..||+||.++|+++|||++.+. ++.+-++++| ....+.. ...|..
T Consensus 69 -SP~Gq~~~v~~---~~~~P~~~~yVGMVrREvFD~~LReRA~kaGAe~~~g~-f~~~~~d~~GWds~~~~~~~~~~G~k 143 (408)
T TIGR02023 69 -SPSGQEIAVEI---KVDIPVEDGYVGMVRREVFDEYLRERAQKAGAELIEGL-FKKLERDEDGWDSRVTLQYREKDGKK 143 (408)
T ss_pred -CCCCCCEECCC---EEECCCCCCEEEEEEHHHCCHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCCCCEEEEEECCCCCC
T ss_conf -77886100242---02436588667775514415789999876214766567-55201567777552589987677751
Q ss_pred CCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC-C--CCCCEEEEEECCCC
Q ss_conf 34665787563026774257860664432554211224899888898998898888751656-6--78880899504347
Q gi|254781024|r 167 YDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQ-Y--HRRGLALHSIGWPL 243 (554)
Q Consensus 167 k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~-~--~~~G~~~h~~g~~~ 243 (554)
...+....+.+++||+|||++|.+||+.+ ++. +...+++++.|.++++.+ . ..+..+..+++..+
T Consensus 144 ------~ag~~~~~v~~~~VIGADGA~S~vAR~~~---~~~---~~~~~viA~qEri~~p~~~~~~y~e~~~d~~~~g~V 211 (408)
T TIGR02023 144 ------EAGEEKKSVEADVVIGADGANSKVARKEL---GLP---DNLPKVIAYQERIKLPDESKMKYYEELADVYYDGEV 211 (408)
T ss_pred ------CCCCCCCCEEEEEEEECCCCCCHHHHHHC---CCC---CCHHHEEEHHHEECCCCCCCCCCCCCEEEEEECCEE
T ss_conf ------25677773789887604478865889718---758---860230201120048886565778877999988804
Q ss_pred CCCCCCCEEEEECCCCEEEEEEEEC-CCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCC
Q ss_conf 6876641257664798059999832-666566889889999986080045650388263035134005421248742308
Q gi|254781024|r 244 DMNTSGGGFVYHFDDNLVSIGFVLH-LDYRNPWISAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKLSFP 322 (554)
Q Consensus 244 ~~~~~gggwiy~~~d~~~~iG~v~~-ld~~~~~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~ 322 (554)
.. -.|||+||..|+ ++||+++. .+ ..+..+....|+.. +.+.|.+++.+...|+.||+-. +|++..+
T Consensus 212 SP--DFYgW~FPk~dH-~avG~Gt~P~h----~~d~K~~~~~lr~~--~GD~L~~~~tir~EaapIPm~P---r~~~~~~ 279 (408)
T TIGR02023 212 SP--DFYGWVFPKGDH-IAVGTGTEPTH----GFDIKQLQAALRRR--AGDKLDGGKTIRREAAPIPMKP---RPRWDSG 279 (408)
T ss_pred CC--CCCCCCCCCCCE-EEEECCCCCCC----HHHHHHHHHHHHHH--HHHHHHCCCCCHHCCCCCCCCC---CCCCCCC
T ss_conf 86--423020688777-88832788564----27899999999987--3026561830100267677554---4100058
Q ss_pred C-EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCC-CCHHHHHHHHHHHH
Q ss_conf 8-7996123233136643522689999999999999987458--865-30367899864204
Q gi|254781024|r 323 G-GSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNG--KKH-DDPIEIEDSWRQTQ 380 (554)
Q Consensus 323 g-~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g--~~~-~~l~~Ye~~~~~s~ 380 (554)
. ++|+|||||+|-|.+||||++||+||++||||++|.|+.| -.+ ..|..|+++|++.+
T Consensus 280 r~~~L~GDAAG~V~~~SGEGIY~Am~sG~~aA~a~~E~l~~Gkk~~~a~~L~~y~~~f~K~y 341 (408)
T TIGR02023 280 RDVVLVGDAAGLVTPASGEGIYFAMKSGKMAAEAIVEALQSGKKAIDATDLRKYEKKFMKLY 341 (408)
T ss_pred CCEEEECCCCCCEECCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 86699813466334437616888763107899999999844532524464478999987631
No 7
>PRK11445 putative oxidoreductase; Provisional
Probab=100.00 E-value=7e-44 Score=323.86 Aligned_cols=308 Identities=20% Similarity=0.247 Sum_probs=184.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC----CCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEE
Q ss_conf 647799989768999999999808997399997867789----8640274033367888678726414885432243669
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG----AHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDL 89 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG----~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~ 89 (554)
+|||||||||||||+||..|++. ++|+||||..+++ .| .||+.|.|+++++|--. ....|.+..+....
T Consensus 1 ~YDVvVVGgGPAGstaA~~La~~---~~Vllldk~~~~~~~pr~K-pCGG~I~~~a~~~l~~~---~~~ip~~~l~~~~i 73 (348)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK---MKVIAIDKKHQCGTEGFSK-PCGGLLAPDAQKSFAKD---GLTLPKDVIANPQI 73 (348)
T ss_pred CCCEEEECCCHHHHHHHHHHHCC---CCEEEEECCCCCCCCCCCC-CCCCCCCHHHHHHHHHC---CCCCCHHHCCCCEE
T ss_conf 99799989788999999998268---9889998135656799988-78687197289998750---67885665015537
Q ss_pred EEEECCCCCEECCCCCCCCCCCCCCCEE-EEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCC
Q ss_conf 9997799767736543565446788268-888898999999998749533068224347762776201454124324434
Q gi|254781024|r 90 YWFLNAQRSIQIPHFCLPDFMDNKEHYI-VSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYD 168 (554)
Q Consensus 90 ~~~l~~~~~~~~p~~~~p~~~~~~g~yi-v~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~ 168 (554)
+... .+...+ +........|+ ++|..||.||.++|++. ++++.+..+..+..++++..+... ..|
T Consensus 74 ~~~~----~~~~~~---~~~~~~~~~yi~~~R~~fD~~L~~~a~~~-~~~~~~~~~~~i~~~~~g~~v~~~--~~g---- 139 (348)
T PRK11445 74 FAVK----TIDLAN---SLTRNYQRSYINIDRHKFDLWLKSLIPAS-VEVYHNSLCRKIWREDDGYHVIFR--ADG---- 139 (348)
T ss_pred EEEE----ECCCCC---CCCCCCCCEEEECCHHHHHHHHHHHHHHC-CCEEEEEEEEEEEECCCEEEEEEE--ECC----
T ss_conf 8766----427877---52213566076055999999999988728-738971489999983980799997--189----
Q ss_pred CCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 66578756302677425786066443255421122489988889899889888875165667888089950434768766
Q gi|254781024|r 169 GTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMNTS 248 (554)
Q Consensus 169 ~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~~~ 248 (554)
...+++||++|+|||++|.++|++......+. .+++.+.++.+.. .+-.. ..++. ..+.
T Consensus 140 --------~~~~~~a~~iIGADGanS~Vrr~l~~~~~~~~-------~ia~~~~~~~~~~--~~~~~---~~~d~-~~~~ 198 (348)
T PRK11445 140 --------WEQHITARYLVGADGANSMVRRHLYPDHQIRK-------YVAIQQWFAEKHP--VPFYS---CIFDN-EITD 198 (348)
T ss_pred --------EEEEEEECEEEECCCCCCHHHHHHCCCCCCCE-------EEEEEEEECCCCC--CCCEE---EEECC-CCCC
T ss_conf --------07898737899898977588776354456652-------7899988527777--76357---99658-7476
Q ss_pred CCEEEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCC-CCCCCCCCCCCCCEEEE
Q ss_conf 41257664798059999832666566889889999986080045650388263035134005-42124874230887996
Q gi|254781024|r 249 GGGFVYHFDDNLVSIGFVLHLDYRNPWISAYEELQRFKTHPDIRIIFTEGERLEYGARVISE-GGWQSVPKLSFPGGSLI 327 (554)
Q Consensus 249 gggwiy~~~d~~~~iG~v~~ld~~~~~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~-gg~~s~pk~~~~g~lLv 327 (554)
+|+|+||.++. +++|.++.. .+..+.++.++.... .-.+..++.+...+..++. ..+. ......++++||
T Consensus 199 ~Y~WvFPk~~~-~~vG~~~~~------~~~~~~~~~~~~~l~-~~g~~~~~~i~~e~~~i~~P~~~~-~~~~g~~~v~Lv 269 (348)
T PRK11445 199 CYSWSISKDGY-FIFGGAYPM------KNGRERFETLKEKLS-AFGFQFGKAVKTEACTVLRPSRWQ-DFVCGKDNAFLI 269 (348)
T ss_pred EEEEEEECCCE-EEEEEEEEC------CCHHHHHHHHHHHHH-HHCCCCCCEEEECCCCCCCCCCCC-CCCCCCCCEEEE
T ss_conf 59999977983-999788754------557999999999998-606545866664165367887643-342488999999
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 12323313664352268999999999999998745886530367899864
Q gi|254781024|r 328 GCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEIEDSWR 377 (554)
Q Consensus 328 GDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~~Ye~~~~ 377 (554)
|||||+|+|++||||++||+||++|||+|.+.++++. ..|.++.+
T Consensus 270 GDAAG~V~P~sGEGIyyAm~SGrlaAeaI~~~~~~~~-----~~~~~~~~ 314 (348)
T PRK11445 270 GEAAGFISASSLEGISYALDSARILREVLNKQPEKLN-----TAYWRATR 314 (348)
T ss_pred EEHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCH-----HHHHHHHH
T ss_conf 8120245854512199999999999999998775514-----56778768
No 8
>pfam05187 ETF_QO Electron transfer flavoprotein-ubiquinone oxidoreductase. Electron-transfer flavoprotein-ubiquinone oxidoreductase (ETF-QO) in the inner mitochondrial membrane accepts electrons from electron-transfer flavoprotein which is located in the mitochondrial matrix and reduces ubiquinone in the mitochondrial membrane. The two redox centres in the protein, FAD and a [4Fe4S] cluster, are present in a 64-kDa monomer.
Probab=100.00 E-value=1.9e-42 Score=313.95 Aligned_cols=110 Identities=49% Similarity=0.821 Sum_probs=107.0
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEE
Q ss_conf 60468999899998854226566665677888965400056437444878877642112321110378899888621796
Q gi|254781024|r 399 GVFIGLSLGLMDIWIQKILGFSFLGTLKHHKMDSCSLEAASQHKKIDYPKPDGKLTFDIMSSLFLAKVKYVKEQPMHLLI 478 (554)
Q Consensus 399 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~kpdg~~~fd~~~~v~~s~~~h~~~qp~Hl~~ 478 (554)
|++.|++++++++| +++|++|||++|+++||++|++++++++|+||||||+||||||||||+|||||+|||||||+|
T Consensus 1 G~~~G~~~~g~d~~---i~~G~~PwTl~h~~~D~~~l~~a~~~~~I~YPKPDg~ltFD~lssV~lS~T~HeEdQP~HL~l 77 (110)
T pfam05187 1 GLWLGLAYAGLDQW---ILRGKSPWTLKHHKPDHAALKPASECKPIDYPKPDGKLTFDRLSSVFLSNTNHEEDQPCHLKL 77 (110)
T ss_pred CHHHHHHHHHHHHH---HHCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEEE
T ss_conf 90689999999999---857778546069995789886677578676889998654451334555067776788764773
Q ss_pred ECCCCCHHCCHHHHCCHHHCCCCCEEEEEEECC
Q ss_conf 175544001735417813213586006889659
Q gi|254781024|r 479 KDKDLQKKSELRIYSGPSMRYCPAGVYEWHQNN 511 (554)
Q Consensus 479 ~~~~~~~~~~~~~~~~p~~~~cpa~vye~~~~~ 511 (554)
+|.++|+++|+++|++|||||||||||||++++
T Consensus 78 ~d~~ip~~~nl~~y~~P~qryCPAgVYE~v~de 110 (110)
T pfam05187 78 KDPSVPIAVNLPKYAGPEQRYCPAGVYEIVEDE 110 (110)
T ss_pred CCCCCCHHHHHHHHCCHHHCCCCCCEEEECCCC
T ss_conf 698833455576526998726787446831589
No 9
>TIGR02028 ChlP geranylgeranyl reductase; InterPro: IPR011774 This entry represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll..
Probab=100.00 E-value=3.9e-37 Score=277.02 Aligned_cols=322 Identities=21% Similarity=0.258 Sum_probs=236.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHH-CCCHHHHCCCCCCCEEEEEEEEEECC
Q ss_conf 79998976899999999980899739999786778986402740333678886-78726414885432243669999779
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSL-LPRWREDKGHPFHTVVKRDLYWFLNA 95 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL-~Pd~~e~~g~pl~~~v~~d~~~~l~~ 95 (554)
|.||||||||++||-.||+.| +...||||... ++| -||+.+.-.-++|+ ||. + -+.+.|++-++ +++
T Consensus 3 VAVvGGGPAG~sAAE~LA~aG--~~~~L~ER~~~-~aK-PCGGAIPLCMv~EF~lP~--d----~iDRRV~kMk~--~SP 70 (401)
T TIGR02028 3 VAVVGGGPAGASAAETLAKAG--IQTFLLERKLD-NAK-PCGGAIPLCMVDEFDLPR--D----IIDRRVTKMKM--ISP 70 (401)
T ss_pred EEEECCCCCHHHHHHHHHHCC--CEEEEEEECCC-CCC-CCCCCCCCCCCCHHCCCH--H----HHHCCCCEEEE--ECC
T ss_conf 889748974168999998503--10463320567-887-788864412010103786--6----75121102242--164
Q ss_pred CC-CEECCCCCCCCCCCCCCCE--EEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECC-CCCEEEEEECCCCCCCCCCC
Q ss_conf 97-6773654356544678826--88888989999999987495330682243477627-76201454124324434665
Q gi|254781024|r 96 QR-SIQIPHFCLPDFMDNKEHY--IVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGK-KGEALGILTGEKGKNYDGTQ 171 (554)
Q Consensus 96 ~~-~~~~p~~~~p~~~~~~g~y--iv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e-~g~vvgv~t~~~G~~k~~~~ 171 (554)
.+ .+.+.. .++. +.| .++|..||.+|.++|++.|+.++.|.-.+=-.-.+ ....-.+..-. .++.
T Consensus 71 SN~~~d~gr-----~L~~-~~yIgM~RREVLDsflR~RA~~~GA~li~Glv~~l~~P~~p~~~PY~lHY~~----~Dg~- 139 (401)
T TIGR02028 71 SNIAVDIGR-----TLKE-HEYIGMVRREVLDSFLRERAADAGATLINGLVLKLELPADPADDPYTLHYVE----EDGK- 139 (401)
T ss_pred CCHHHHHHC-----CCCC-CCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEEEECCCCCCCCCCCEEEEEE----ECCC-
T ss_conf 101332000-----2788-7612514578888999999986488141444576317788877871789870----0687-
Q ss_pred CCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC--CCCCEEEEEECCCCCCCCCC
Q ss_conf 7875630267742578606644325542112248998888989988988887516566--78880899504347687664
Q gi|254781024|r 172 GKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQY--HRRGLALHSIGWPLDMNTSG 249 (554)
Q Consensus 172 ~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~--~~~G~~~h~~g~~~~~~~~g 249 (554)
+.....-..+.-+.||+|||+||.|+|.+.. --..|+++++|-+.+|.+. +....+.+++|.+... ..
T Consensus 140 ~G~~g~~~~lEVD~VIGADGANSRvAk~idA--------GDY~~AIAfQERIRlPde~MaYY~dLAEMYVGdDVSP--DF 209 (401)
T TIGR02028 140 GGASGTKKTLEVDAVIGADGANSRVAKEIDA--------GDYDYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSP--DF 209 (401)
T ss_pred CCCCCCCEEEEEEEEECCCCCCCHHHCCCCC--------CCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCC--CC
T ss_conf 5876454068887787078752023111378--------8523444433203687011234664333200788686--63
Q ss_pred CEEEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCCCEEEECC
Q ss_conf 12576647980599998326665668898899999860800456503882630351340054212487423088799612
Q gi|254781024|r 250 GGFVYHFDDNLVSIGFVLHLDYRNPWISAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKLSFPGGSLIGC 329 (554)
Q Consensus 250 ggwiy~~~d~~~~iG~v~~ld~~~~~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~g~lLvGD 329 (554)
|+|+||+-|+ +.||.++-. ...+--..||.-...- -+..+.||+.+...||.|||.. .|+.+..++.||||
T Consensus 210 YgWVFPK~DH-VAVGTGTvk----~~K~~Ik~lQ~g~R~R-A~~K~~GG~iirVEAHPIPEHP---RPRRv~~RVALVGD 280 (401)
T TIGR02028 210 YGWVFPKCDH-VAVGTGTVK----AAKDEIKKLQSGIRAR-AADKVAGGKIIRVEAHPIPEHP---RPRRVVGRVALVGD 280 (401)
T ss_pred CCCCCCCCCE-EEECCCEEE----ECCHHHHHHHHHHHHH-HHHHHCCCEEEEEECCCCCCCC---CCCEECCEEEEEEC
T ss_conf 4010677364-773353145----0507889998888787-8866048808998134775424---88500120577633
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHH
Q ss_conf 3233136643522689999999999999987458865---30367899864204
Q gi|254781024|r 330 AAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKH---DDPIEIEDSWRQTQ 380 (554)
Q Consensus 330 AAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~---~~l~~Ye~~~~~s~ 380 (554)
|||.|--.+||||++|-+||+|+||++++..+.+..- ..+..|=++|.+.|
T Consensus 281 AAG~VTkcSGEGIYFAAkSgR~Ca~a~~~~~~~g~~~~~~g~~~~YL~rWD~~y 334 (401)
T TIGR02028 281 AAGYVTKCSGEGIYFAAKSGRLCAEAIVEESRLGKKVTEEGDLKKYLKRWDKEY 334 (401)
T ss_pred CCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 667535003650546654445688998864303640134678899988765531
No 10
>PRK06185 hypothetical protein; Provisional
Probab=99.97 E-value=2.7e-27 Score=208.56 Aligned_cols=325 Identities=17% Similarity=0.224 Sum_probs=188.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHH--CCCHHHHCCCCCCCEEEEEEEE
Q ss_conf 64779998976899999999980899739999786778986402740333678886--7872641488543224366999
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSL--LPRWREDKGHPFHTVVKRDLYW 91 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL--~Pd~~e~~g~pl~~~v~~d~~~ 91 (554)
+.||+||||||||+++|+.|++.| ++|+||||...+-. ...|..+.|.+++-| +.=|.+....+. . ..+.+.
T Consensus 6 ~tDV~IVGaGpaGL~lAl~Lar~G--i~V~VlEk~~~~~~-~~Rg~~i~p~tl~iL~~lGl~~~l~~~~~-~--~~~~~~ 79 (409)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAG--VDVTVLEKHADFLR-DFRGDTVHPSTLELMDELGLLERFLELPH-S--KVRTLR 79 (409)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEECCCCCCCC-CCEEEEECHHHHHHHHHCCCHHHHHHCCC-C--CEEEEE
T ss_conf 899899991889999999999779--99999918999877-86189878999999998798689973678-7--334799
Q ss_pred EECCCCCEECCCCC-CCCCCCCCCCEEEEHHHHHHHHHHHHHHC-CCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCC
Q ss_conf 97799767736543-56544678826888889899999999874-95330682243477627762014541243244346
Q gi|254781024|r 92 FLNAQRSIQIPHFC-LPDFMDNKEHYIVSLGQVCRWLKNKAEAL-GVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDG 169 (554)
Q Consensus 92 ~l~~~~~~~~p~~~-~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~ 169 (554)
+......+....+. .+.. .++ .+.+.+..|.+.|.++|.+. +++++.+++++++.. +++.+.+|.....+
T Consensus 80 ~~~~g~~~~~~d~~~l~~~-~~~-~~~~~q~~ll~~L~~~a~~~~~~~l~~~~~v~~l~~-d~~~v~gV~~~~~d----- 151 (409)
T PRK06185 80 FDIGGRTVTLADFSRLPTR-YPY-IAMMPQWDFLDFLAEKASRYPTFTLRMGAEVTGLIE-EGGRVAGVRYRTPD----- 151 (409)
T ss_pred EEECCEEEEEECCCCCCCC-CCC-EEECCHHHHHHHHHHHHHCCCCCEEEECCEEEEEEE-ECCCEEEEEEECCC-----
T ss_conf 9959938997430016888-884-277018999999999985189959996888899999-59908999998489-----
Q ss_pred CCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-HHCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 657875630267742578606644325542112248998888989988988887-5165667888089950434768766
Q gi|254781024|r 170 TQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELW-KIKPQYHRRGLALHSIGWPLDMNTS 248 (554)
Q Consensus 170 ~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~-ei~~~~~~~G~~~h~~g~~~~~~~~ 248 (554)
...+++|++||+|||++|.++++++..+. .+......+| .++.....+......+ ..
T Consensus 152 -------g~~~i~adlvVGADG~~S~VR~~~gi~~~--------~~~~~~d~~~~~~~~~~~~~~~~~~~~-------~~ 209 (409)
T PRK06185 152 -------GELEIRADLTVGADGRHSRVRELAGLEVR--------EFGAPMDVLWFRLPRRPGDPEGSMGRF-------GP 209 (409)
T ss_pred -------CCEEEEEEEEEECCCCCCHHHHHCCCCCE--------ECCCCEEEEEEECCCCCCCCCEEEEEE-------CC
T ss_conf -------85899972999738998478997599804--------015556899999257789986069998-------79
Q ss_pred CCEEEEECCCCEEEEEEEECCCCCCC-CCCHHHHH-HHHH-HCCCHHHHHCCCCEECCC-CEECCCCCCCCCCCCCCCCE
Q ss_conf 41257664798059999832666566-88988999-9986-080045650388263035-13400542124874230887
Q gi|254781024|r 249 GGGFVYHFDDNLVSIGFVLHLDYRNP-WISAYEEL-QRFK-THPDIRIIFTEGERLEYG-ARVISEGGWQSVPKLSFPGG 324 (554)
Q Consensus 249 gggwiy~~~d~~~~iG~v~~ld~~~~-~~~~~~~l-q~fk-~hp~i~~~l~gg~~~~yg-a~~ip~gg~~s~pk~~~~g~ 324 (554)
+..+++...++...+++++..+.... .....+.| +.+. ..|.+...+..-. .+. ...++.. ...+++.+.+|+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~--~~~~~~~~~~~-~~r~~~w~~~rv 286 (409)
T PRK06185 210 GQMLVMIDRGDYWQCGYVIPKGGDAALRAAGLEAFRADVAELAPELADRVAELA--SWDDVKLLDVR-VDRLRRWHRPGL 286 (409)
T ss_pred CCEEEEECCCCCEEEEEEECCCCHHHHHHCCHHHHHHHHHHHCHHHHHHHHHCC--CCCCEEEEEEH-HHHHHHHEECCE
T ss_conf 968999618992899998158854755525789999999985815676654233--21323798741-433055387989
Q ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHH
Q ss_conf 996123233136643522689999999999999987458865-30367899864
Q gi|254781024|r 325 SLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKH-DDPIEIEDSWR 377 (554)
Q Consensus 325 lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~-~~l~~Ye~~~~ 377 (554)
+|+||||..+.|..|.|++.||..+..+|..++++|..|... +.|..|+++-+
T Consensus 287 ~LiGDAAH~~~P~~GQG~N~ai~DA~~LA~~LA~~l~~g~~~~~~L~~y~~~R~ 340 (409)
T PRK06185 287 LCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRGRVSDADLAAVQRRRE 340 (409)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 999744464797501468789999999999999998349996899999998757
No 11
>pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes.
Probab=99.97 E-value=1.2e-27 Score=210.93 Aligned_cols=330 Identities=18% Similarity=0.153 Sum_probs=186.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHH--CCCHHHH--CCCCCCCEEEEEE
Q ss_conf 64779998976899999999980899739999786778986402740333678886--7872641--4885432243669
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSL--LPRWRED--KGHPFHTVVKRDL 89 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL--~Pd~~e~--~g~pl~~~v~~d~ 89 (554)
|.||+||||||||+++|+.|+|.| ++|.|+||.+.+... -.|-.|.|.+++-| +.=|.+. .+.|. ....
T Consensus 1 ~~DV~IvGaG~aGl~lA~~L~~~G--i~v~V~Er~~~~~~~-g~g~~l~p~~~~~L~~lGl~~~~~~~~~~~----~~~~ 73 (349)
T pfam01494 1 ETDVLIVGGGPAGLMLALLLARAG--VRVVLVERHATTSVL-PRAGGLNQRTMELLRQAGLEDRILAEGAPH----EGMG 73 (349)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEECCCCCCCCC-CEEEEECHHHHHHHHHCCCHHHHHHCCCCC----CEEE
T ss_conf 997899992889999999998779--989999289998878-779998989999999879868998506875----1059
Q ss_pred EEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCC
Q ss_conf 99977997677365435654467882688888989999999987495330682243477627762014541243244346
Q gi|254781024|r 90 YWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDG 169 (554)
Q Consensus 90 ~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~ 169 (554)
+....... ...... ........+.+.|..+.+.|.+.++..|++++.+.+++.+..++++..+.+..+..+
T Consensus 74 ~~~~~~~~-~~~~~~---~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~i~~~~~v~~~~~~~~~v~~~~~~~~~~----- 144 (349)
T pfam01494 74 LAFYNTSR-RRADLD---FLTSPPRVTVYPQTELEPILREHAEARGAQVRFGTEVLSLEQDGDGVTAVVRDRRDG----- 144 (349)
T ss_pred EEECCCCC-CEEECC---CCCCCCCEEEECHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCEEEEEEECCCC-----
T ss_conf 99837864-222014---556776268862999999999999857998996617877520599437999845899-----
Q ss_pred CCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 65787563026774257860664432554211224899888898998898888751-65667888089950434768766
Q gi|254781024|r 170 TQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKI-KPQYHRRGLALHSIGWPLDMNTS 248 (554)
Q Consensus 170 ~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei-~~~~~~~G~~~h~~g~~~~~~~~ 248 (554)
++.+++|++||+|||.+|.+++++...+..... ..+. .+..++.. +..........+.+.+ ....
T Consensus 145 -------~~~~i~adlvIgADG~~S~vR~~l~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 210 (349)
T pfam01494 145 -------EEYTVRAKYLVGCDGGRSPVRKQLGIEFEGFEG---VPFG-SLDVLFDAPDLSDPVERAFVHYLIY---APHS 210 (349)
T ss_pred -------CEEEEEEEEEECCCCCCCHHHHHCCCCCCCCCC---CEEE-EEEEEECCCCCCCCCCCCCEEEEEE---CCCC
T ss_conf -------558999768841577764899975999755545---4389-9999952578421235674289997---1899
Q ss_pred CCEEEEECCCCE-EEEEEEECCCC----CCCCCCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCCC
Q ss_conf 412576647980-59999832666----5668898899999860800456503882630351340054212487423088
Q gi|254781024|r 249 GGGFVYHFDDNL-VSIGFVLHLDY----RNPWISAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKLSFPG 323 (554)
Q Consensus 249 gggwiy~~~d~~-~~iG~v~~ld~----~~~~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~g 323 (554)
++.+++|..+.. ....+....+. .....+..+..+.+..... ......... .....+.... ..++.+.++
T Consensus 211 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~-~~~~~~~gr 285 (349)
T pfam01494 211 RGFMVGPWRSAGRSRYYVQVPWDPEVEERPEEFTDEEAKQRLRSAVG--IDLADVEIL--WKSIWGVRSR-VATRYRKGR 285 (349)
T ss_pred CEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHC--CCCCCCCEE--EEEECCCCCE-ECCCCCCCC
T ss_conf 86999972799827999997078542225443899999999998648--654555635--5786200356-735511598
Q ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 7996123233136643522689999999999999987458865303678998642
Q gi|254781024|r 324 GSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEIEDSWRQ 378 (554)
Q Consensus 324 ~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~~Ye~~~~~ 378 (554)
++|+||||..+.|+.|.|++.||+.+...|+.+...+......+.|..||+.-+.
T Consensus 286 v~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~~g~~~~~~L~~Ye~~R~~ 340 (349)
T pfam01494 286 VFLAGDAAHIHPPTGGQGLNTGIQDAFNLAWKLAAVLRGTAGEALLDTYEAERRP 340 (349)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 9999861023886354677589999999999999997499988999999999999
No 12
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.97 E-value=4e-26 Score=200.49 Aligned_cols=346 Identities=20% Similarity=0.142 Sum_probs=205.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECC-CCCCCCCCCCCEECHHHHHHHCCCHHHHCCC-C-CC-CEEEEE
Q ss_conf 364779998976899999999980899739999786-7789864027403336788867872641488-5-43-224366
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKS-AEVGAHILSGAIIDPIGIDSLLPRWREDKGH-P-FH-TVVKRD 88 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~-~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~-p-l~-~~v~~d 88 (554)
+.+||+||||||||+++|+.|++.| ++|+||||. .... ...-|..|.+.+++-| +..|. + +. ..+...
T Consensus 1 ~~~dV~IvGaG~aGl~lA~~L~~~G--~~V~liE~~~~~~~-~~~r~~~l~~~~~~~L-----~~lG~~~~i~~~~~~~~ 72 (387)
T COG0654 1 KMLDVAIVGAGPAGLALALALARAG--LDVTLLERAPRELL-ERGRGIALSPNALRAL-----ERLGLWDRLEALGVPPL 72 (387)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCC-CCCEEEEECHHHHHHH-----HHCCCHHHHHHCCCCCE
T ss_conf 9854999997899999999998289--96899907761135-5755999898999999-----98499077761578860
Q ss_pred EEEEECCCC--CEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCC-CEECCCCEEEEEEECCCCCEEEEEECCCCC
Q ss_conf 999977997--67736543565446788268888898999999998749-533068224347762776201454124324
Q gi|254781024|r 89 LYWFLNAQR--SIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALG-VEIYCGFTATEIYYGKKGEALGILTGEKGK 165 (554)
Q Consensus 89 ~~~~l~~~~--~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~G-vei~~g~~v~~i~~~e~g~vvgv~t~~~G~ 165 (554)
........+ .+.++..... .....+++.+..+-+.|.+.+.+.+ ++++.++.+..+..++++.. +.....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~v~l~~~~~v~~~~~~~~~v~--v~l~~d-- 145 (387)
T COG0654 73 HVMVVDDGGRRLLIFDAAELG---RGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVT--VTLSFD-- 145 (387)
T ss_pred EEEEEECCCCEEEEECHHHCC---CCCCEEEEEHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCEEE--EEEECC--
T ss_conf 379996599638981522168---7762799888999999999987189829995777999885397379--999039--
Q ss_pred CCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf 43466578756302677425786066443255421122489988889899889888875165667888089950434768
Q gi|254781024|r 166 NYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDM 245 (554)
Q Consensus 166 ~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~ 245 (554)
|.+++|+++|+|||.+|.++++++ ........-++.+. +..+..+...++..+..+.
T Consensus 146 ------------G~~~~a~llVgADG~~S~vR~~~~-~~~~~~~~y~~~~l-----~~~~~~~~~~~~~~~~~~~----- 202 (387)
T COG0654 146 ------------GETLDADLLVGADGANSAVRRAAG-IAEFSGRDYGQTAL-----VANVEPEEPHEGRAGERFT----- 202 (387)
T ss_pred ------------CEEEECCEEEECCCCCHHHHHHCC-CCCCCCCCCCEEEE-----EEEECCCCCCCCCEEEEEC-----
T ss_conf ------------919975999988998769997469-87655775550699-----9970377888871689923-----
Q ss_pred CCCCCEEEEECCCCEEEEEEEECCCC--CCCCCCHHHHHHHHHHC-CCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCC
Q ss_conf 76641257664798059999832666--56688988999998608-0045650388263035134005421248742308
Q gi|254781024|r 246 NTSGGGFVYHFDDNLVSIGFVLHLDY--RNPWISAYEELQRFKTH-PDIRIIFTEGERLEYGARVISEGGWQSVPKLSFP 322 (554)
Q Consensus 246 ~~~gggwiy~~~d~~~~iG~v~~ld~--~~~~~~~~~~lq~fk~h-p~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~ 322 (554)
..+.--++|.+++..++-+...... .....+..+..+.+... +.... .+...........|..... ..+...+
T Consensus 203 -~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~pl~~~~-a~~~~~~ 278 (387)
T COG0654 203 -HAGPFALLPLPDNRSSVVWSLPPGPAEDLQGLSDEEFLRELQRRLGERDP--LGRVTLVSSRSAFPLSLRV-AERYRRG 278 (387)
T ss_pred -CCCCEEEEECCCCCEEEEEECCCCHHHHHCCCCHHHHHHHHHHHCCCCCC--CCEEEECCCCEECCCCCCE-ECCEECC
T ss_conf -89767998748896689999138614540237868899999986497433--5604553532012212412-0113648
Q ss_pred CEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
Q ss_conf 8799612323313664352268999999999999998745886530367899864204667888742256688761604
Q gi|254781024|r 323 GGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEIEDSWRQTQIGKDLWIIRNIKPLLSRFGVF 401 (554)
Q Consensus 323 g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~~Ye~~~~~s~~~~el~~~rn~~~~~~~~g~~ 401 (554)
+++|+||||..+.|+.|.|++.||......|+.+.++...+...+.|..|+++-+.. +.+=...++.+...|+.-...
T Consensus 279 Rv~LiGDAAH~~~P~~gQG~nlg~~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~s~~~~~~~~~~~~~ 356 (387)
T COG0654 279 RVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPGADAAALAAYEARRRPR-AEAIQKLSRALGRLFSADGPF 356 (387)
T ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCH
T ss_conf 889995566768986104576779899999999997541685189999999997889-999999999988643447617
No 13
>PRK07045 putative monooxygenase; Reviewed
Probab=99.96 E-value=6.1e-25 Score=192.24 Aligned_cols=342 Identities=16% Similarity=0.150 Sum_probs=201.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHH-----CCCHHHHCCCCCCCEEEEE
Q ss_conf 64779998976899999999980899739999786778986402740333678886-----7872641488543224366
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSL-----LPRWREDKGHPFHTVVKRD 88 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL-----~Pd~~e~~g~pl~~~v~~d 88 (554)
.+||+||||||+|+++|+.|++.| ++|.|+||.+.++.- -.+..+.|.+++-| +++... .+.+ ..+
T Consensus 5 ~~dVlIvGaG~aGl~lA~~L~r~G--~~v~v~E~~~~~~~~-~~~~~l~p~~~~~L~~lGl~~~~~~-~~~~-----~~~ 75 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARG--HSVTVVERAARNRAQ-NGADLLKPSGIGVVRAMGLLDDVFA-AGGL-----RRD 75 (388)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCC-CCEEEECHHHHHHHHHCCCHHHHHH-CCCC-----EEE
T ss_conf 985899992889999999998679--989999089987777-8634889999999998869689986-0785-----145
Q ss_pred EEEEECCCCCE-ECCCCCCCCCCCCCCC-EEEEHHHHHHHHHHHHHH-CCCEECCCCEEEEEEECCCCCEEEEEECCCCC
Q ss_conf 99997799767-7365435654467882-688888989999999987-49533068224347762776201454124324
Q gi|254781024|r 89 LYWFLNAQRSI-QIPHFCLPDFMDNKEH-YIVSLGQVCRWLKNKAEA-LGVEIYCGFTATEIYYGKKGEALGILTGEKGK 165 (554)
Q Consensus 89 ~~~~l~~~~~~-~~p~~~~p~~~~~~g~-yiv~r~~fd~~L~~~Ae~-~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~ 165 (554)
.+.+......+ .++... ....+. ..+.+..+.+.|.++++. .+++++.++++..+..++++.++.+...+
T Consensus 76 ~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~v~~v~~~~~~~~~~v~~~d--- 148 (388)
T PRK07045 76 AMRLYHDKELIASLDYRS----ASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSD--- 148 (388)
T ss_pred EEEEECCCCEEEEECCCC----CCCCCCEEEECHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCEEEEEEECC---
T ss_conf 799950895798744555----6666838983099999999999745898199979899999984992599999589---
Q ss_pred CCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHH-HHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf 4346657875630267742578606644325542112248998888989988988-887516566788808995043476
Q gi|254781024|r 166 NYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIK-ELWKIKPQYHRRGLALHSIGWPLD 244 (554)
Q Consensus 166 ~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvk-e~~ei~~~~~~~G~~~h~~g~~~~ 244 (554)
|.++++++||+|||.+|.+++++.. ..... ..|....- ..+...+.. .+.... + .
T Consensus 149 ------------G~~~~adlvIGADG~~S~vR~~l~~---~~~~~--~~y~~~~~~~~~~~~~~~-~~~~~~-~-----~ 204 (388)
T PRK07045 149 ------------GERVAPTVLVGADGARSMIRDDVLR---MPAER--VPYATPMAFGTIALTDSV-RECNRL-Y-----V 204 (388)
T ss_pred ------------CCEEEEEEEEECCCCCCHHHHHHHC---CCCCC--EECCCEEEEEEEECCCCC-CCCEEE-E-----E
T ss_conf ------------9799740999956886278898728---98520--123522899999825887-763389-9-----9
Q ss_pred CCCCCCEEEEECCCCEEEEEEEECCCCCCCC---CCHHHHHHHHHHC--CCHHHHHCC-CCEECCCCEECCCCCCCCCCC
Q ss_conf 8766412576647980599998326665668---8988999998608--004565038-826303513400542124874
Q gi|254781024|r 245 MNTSGGGFVYHFDDNLVSIGFVLHLDYRNPW---ISAYEELQRFKTH--PDIRIIFTE-GERLEYGARVISEGGWQSVPK 318 (554)
Q Consensus 245 ~~~~gggwiy~~~d~~~~iG~v~~ld~~~~~---~~~~~~lq~fk~h--p~i~~~l~g-g~~~~yga~~ip~gg~~s~pk 318 (554)
....+-.++||.+++..++-+....+..... ....+.++++... +...+.+.. .....+ ...|.+.. ..++
T Consensus 205 ~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~pl~~~-~~~~ 281 (388)
T PRK07045 205 DSNQGLAYFYPIGDQATRLVVSFPADEMQGYLADTTRTKLLARLNEFVGDESADAMAAIGAGTAF--PLIPLGRM-NLDR 281 (388)
T ss_pred ECCCCEEEEEECCCCCEEEEEEEECHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCEE--EEEEEEEE-ECHH
T ss_conf 07992899997599919999996050544420456679999999977272025587651655404--66241368-8213
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2308879961232331366435226899999999999999874588-653036789986420466788874225668876
Q gi|254781024|r 319 LSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGK-KHDDPIEIEDSWRQTQIGKDLWIIRNIKPLLSR 397 (554)
Q Consensus 319 ~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~-~~~~l~~Ye~~~~~s~~~~el~~~rn~~~~~~~ 397 (554)
.+.++++|+||||..+.|+.|.|.+.||..+...|+.+..++.... ..+.|..||++-|.- ..+=+...+++...|+.
T Consensus 282 ~~~grvvLiGDAAH~~~P~~GQG~N~aieDA~~La~~L~~~~~~~~~~~~~L~~Ye~~Rrp~-~~~v~~~~~~~~~l~~~ 360 (388)
T PRK07045 282 YHKRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQIALADALERFERIRRPV-NEAVISYGHALATTYHD 360 (388)
T ss_pred HCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCC
T ss_conf 14585799960004589850216878999999999999998679977599999999987189-99999999999998666
Q ss_pred HC
Q ss_conf 16
Q gi|254781024|r 398 FG 399 (554)
Q Consensus 398 ~g 399 (554)
-.
T Consensus 361 ~~ 362 (388)
T PRK07045 361 RA 362 (388)
T ss_pred CC
T ss_conf 75
No 14
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.96 E-value=2.4e-25 Score=195.06 Aligned_cols=326 Identities=16% Similarity=0.162 Sum_probs=190.2
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC-CCCEECHHHHHHH--CCCHHHH--CCCCCCCEEE
Q ss_conf 036477999897689999999998089973999978677898640-2740333678886--7872641--4885432243
Q gi|254781024|r 12 VFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL-SGAIIDPIGIDSL--LPRWRED--KGHPFHTVVK 86 (554)
Q Consensus 12 ~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~-sG~vl~p~aL~eL--~Pd~~e~--~g~pl~~~v~ 86 (554)
.|||||+||||||+|+++|+.|++.| ++|+||||...+....- -.-.+.+.+++-| +-=|.+. ...|+ .
T Consensus 15 ~~d~DV~IVGaGp~Gl~lAl~La~~G--i~v~viE~~~~~~~~~~~ra~~l~~~s~~iL~~lGl~~~i~~~~~~~----~ 88 (413)
T PRK07364 15 SLDYDVVIVGGGIVGLTLAAALKDSG--LRIALIEAQPAEAAVAKGQAYALSLLSARIFEGIGVWEKILPHIGPF----R 88 (413)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHHCCCC----C
T ss_conf 89899899992799999999998689--98899917997666788738995899999999879968988614754----2
Q ss_pred EEEEEEECCC--CCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCC-CEECCCCEEEEEEECCCCCEEEEEECCC
Q ss_conf 6699997799--767736543565446788268888898999999998749-5330682243477627762014541243
Q gi|254781024|r 87 RDLYWFLNAQ--RSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALG-VEIYCGFTATEIYYGKKGEALGILTGEK 163 (554)
Q Consensus 87 ~d~~~~l~~~--~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~G-vei~~g~~v~~i~~~e~g~vvgv~t~~~ 163 (554)
. +.+...+ ..+.+... ..-...-+|++....+.+.|.+.+++.+ ++++.+..++++..++++..+.+...+
T Consensus 89 ~--i~~~~~~~~~~~~~~~~---~~~~~~lg~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~~~- 162 (413)
T PRK07364 89 Q--IQLSDADFPGVVRFSPE---DLGTEALGYVGEHQVLLEALQEFVQSCPNITWLCPAQVLSVEYGEHQATVTLEIAG- 162 (413)
T ss_pred E--EEEEECCCCCEEEECHH---HCCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCEEEEEEECCC-
T ss_conf 5--99981898746751655---43887542330029999999999984899489828779999976983699998299-
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 24434665787563026774257860664432554211224899888898998898888751656678880899504347
Q gi|254781024|r 164 GKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPL 243 (554)
Q Consensus 164 G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~ 243 (554)
...+++|+++|+|||++|.|+++++..+.- ..-+|... +..+..+....+.....+ |
T Consensus 163 -------------~~~~i~a~llIgaDG~~S~VR~~lgi~~~g--~~y~q~~~-----~~~v~~~~~~~~~~~~~f-~-- 219 (413)
T PRK07364 163 -------------QLQTLQSKLVVAADGARSPIRQAAGIKTDG--WKYWQSCV-----TATVKPEAPHNDVAYERF-W-- 219 (413)
T ss_pred -------------CEEEEEEEEEEEECCCCCHHHHHHCCCCCC--CCCCEEEE-----EEEECCCCCCCCEEEEEE-C--
T ss_conf -------------138998568999318885003540687656--88660699-----986314577653148986-0--
Q ss_pred CCCCCCCEEEEECCCCEEEEEEEECCCCCC--CCCCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCC
Q ss_conf 687664125766479805999983266656--688988999998608004565038826303513400542124874230
Q gi|254781024|r 244 DMNTSGGGFVYHFDDNLVSIGFVLHLDYRN--PWISAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKLSF 321 (554)
Q Consensus 244 ~~~~~gggwiy~~~d~~~~iG~v~~ld~~~--~~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~ 321 (554)
+. |-.-++|+.+++.++-+....+..+ ...+..+..+++... +.+.+..-+.+. .....|.. ....++.+.
T Consensus 220 ~~---g~~a~lPl~~~~~~ivw~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~-~~~~~pl~-~~~a~~~~~ 292 (413)
T PRK07364 220 PS---GPFAILPLPGNRCQIVWTAPHAQAKALLALPEAEFLAELQQR--TGDQLGKLELLG-DRFVFPVQ-LMQSDRYVQ 292 (413)
T ss_pred CC---CCEEEEECCCCEEEEEEECCCHHHHHHHCCCHHHHHHHHHHH--HCCCCCCEEEEC-CCCCCCHH-HHHHHHHHC
T ss_conf 89---976998769980799997671425767509989999999987--465454158941-54204087-753577634
Q ss_pred CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-C--CCHHHHHHHHHHH
Q ss_conf 88799612323313664352268999999999999998745886-5--3036789986420
Q gi|254781024|r 322 PGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKK-H--DDPIEIEDSWRQT 379 (554)
Q Consensus 322 ~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~-~--~~l~~Ye~~~~~s 379 (554)
++++|+||||..+.|+-|-|++.+|......|+.+.++...+.. . ..|.+|++.-+..
T Consensus 293 ~Rv~LiGDAAH~~~P~~GQG~Nlgi~Da~~La~~L~~a~~~~~d~g~~~~L~~Y~~~R~~~ 353 (413)
T PRK07364 293 HRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLLEAHQRGEDIGSLAVLKRYERWRKRE 353 (413)
T ss_pred CCCEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 7723532044328973046131579999999999999986399976699999999998899
No 15
>PRK09126 hypothetical protein; Provisional
Probab=99.96 E-value=3.2e-25 Score=194.22 Aligned_cols=341 Identities=16% Similarity=0.162 Sum_probs=191.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC--CCCCCC--CEECHHHHHHH--CCCHHHHCCCCCCCEEE
Q ss_conf 3647799989768999999999808997399997867789--864027--40333678886--78726414885432243
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG--AHILSG--AIIDPIGIDSL--LPRWREDKGHPFHTVVK 86 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG--~~i~sG--~vl~p~aL~eL--~Pd~~e~~g~pl~~~v~ 86 (554)
|+|||+||||||+|+++|..|++.| ++|+||||..... .+...| -.|.+.+++-| +--|.+.....+ .++.
T Consensus 2 m~~DV~IvGaGp~Gl~lA~~La~~G--~~v~viE~~~~~~~~~~~~~~r~~al~~~s~~~L~~lG~~~~l~~~~~-~~~~ 78 (392)
T PRK09126 2 MHSDILVVGAGPAGLSFARSLAGSG--LKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEAEI-SPLR 78 (392)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCC-CCEE
T ss_conf 9899999992589999999998689--989999089853345778886289868999999998789667775076-7414
Q ss_pred EEEEEEECCCC--CEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHC-CCEECCCCEEEEEEECCCCCEEEEEECCC
Q ss_conf 66999977997--6773654356544678826888889899999999874-95330682243477627762014541243
Q gi|254781024|r 87 RDLYWFLNAQR--SIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEAL-GVEIYCGFTATEIYYGKKGEALGILTGEK 163 (554)
Q Consensus 87 ~d~~~~l~~~~--~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~e~g~vvgv~t~~~ 163 (554)
. +.+.+... .+.+.. +..-...-+|++....+.+.|.+.+.+. +++++.+++++++..++++..+.. .+
T Consensus 79 ~--~~~~~~~~~~~l~~~~---~~~~~~~lg~~v~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~~--~~- 150 (392)
T PRK09126 79 D--AKVLNGRSPFALTFDA---RGTGADALGYLVPNHLIRRAAYEAVSQQPGIEILTGHRVKAVTHSDDGAQVTL--AN- 150 (392)
T ss_pred E--EEEECCCCCEEEEECC---CCCCCCCCCEECCHHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCEEEEEE--CC-
T ss_conf 6--8995288750475047---55676665000219999999999998589969986988899997598059998--58-
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 24434665787563026774257860664432554211224899888898998898888751656678880899504347
Q gi|254781024|r 164 GKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPL 243 (554)
Q Consensus 164 G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~ 243 (554)
+.+++|+++|+|||++|.|+++++..+... .|..-. -+..+..+....+..+..++
T Consensus 151 --------------g~~i~a~llVgADG~~S~vR~~lgi~~~~~------~~~~~~-~v~~~~~~~~~~~~a~~~f~--- 206 (392)
T PRK09126 151 --------------GRRLTARLLVAADSRFSATRRQLGIGAQMH------DFGRTM-LVCRMRHELPHHHTAWEWFG--- 206 (392)
T ss_pred --------------CCEEEEEEEEEECCCCCHHHCCCCCCCCCC------CCCCEE-EEEEEEECCCCCCEEEEEEC---
T ss_conf --------------988887799980688861110377786234------146269-99998604787504899964---
Q ss_pred CCCCCCCEEEEECCCCEEEEEEEECCCCCCC--CCCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCC
Q ss_conf 6876641257664798059999832666566--88988999998608004565038826303513400542124874230
Q gi|254781024|r 244 DMNTSGGGFVYHFDDNLVSIGFVLHLDYRNP--WISAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKLSF 321 (554)
Q Consensus 244 ~~~~~gggwiy~~~d~~~~iG~v~~ld~~~~--~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~ 321 (554)
..+.-.++|..++..++-+....+.... ..++.+..+.+.. .+...+..-..+. .....|.... ..+++..
T Consensus 207 ---~~~~~a~lP~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~g~~~~~~-~~~~~pl~~~-~a~~~~~ 279 (392)
T PRK09126 207 ---YGRTLALLPLNGGLSSLVLTLPPDQIEALLALDPEAFAAEVTA--QFKGRLGAMRLVS-SRHAYPLVAV-YAHRFVA 279 (392)
T ss_pred ---CCCCEEEEECCCCCEEEEEEECHHHHHHHHHCCHHHHHHHHHH--HHHHHCCCCEECC-CCEECCHHHH-HHHHHHC
T ss_conf ---9996799964999279999827155898870999999999998--6420136432403-3122413542-2556524
Q ss_pred CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-CCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 887996123233136643522689999999999999987458-865--303678998642046678887422566887
Q gi|254781024|r 322 PGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNG-KKH--DDPIEIEDSWRQTQIGKDLWIIRNIKPLLS 396 (554)
Q Consensus 322 ~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g-~~~--~~l~~Ye~~~~~s~~~~el~~~rn~~~~~~ 396 (554)
++++|+||||..+.|+.|-|++.+|..+...|+.+.+++..+ |.. ..|..|+++-+.. ...=+.....+...|+
T Consensus 280 ~Rv~LiGDAAH~~~P~~GQG~Nlgl~Da~~La~~L~~~~~~~~d~g~~~~L~~Y~~~R~~~-~~~~~~~t~~l~~~f~ 356 (392)
T PRK09126 280 KRFALIGDAAVGMHPVTAHGFNLGLASQDILAKLILEAAARGQDIGAASLLERYERKHRLA-TRPLYHATNAIVALYT 356 (392)
T ss_pred CCCEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC
T ss_conf 7858987032137974146275789999999999999985389977699999999999999-9999999999999987
No 16
>PRK07608 hypothetical protein; Provisional
Probab=99.95 E-value=6.1e-25 Score=192.24 Aligned_cols=342 Identities=17% Similarity=0.117 Sum_probs=191.3
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC-------EECHHHHHHH--CCCHHHHCCCCCC
Q ss_conf 036477999897689999999998089973999978677898640274-------0333678886--7872641488543
Q gi|254781024|r 12 VFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGA-------IIDPIGIDSL--LPRWREDKGHPFH 82 (554)
Q Consensus 12 ~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~-------vl~p~aL~eL--~Pd~~e~~g~pl~ 82 (554)
-|+|||+||||||+|+++|+.|++.| ++|+|||+...... ..+. .+.|.+++-| +--|....... .
T Consensus 3 ~m~~DV~IvGaGp~Gl~lA~~La~~G--~~v~viE~~~~~~~--~~~~~~~~R~~al~~~s~~~L~~lGv~~~l~~~~-~ 77 (389)
T PRK07608 3 HMKFDVAVVGGGLVGKSLALALAQSG--LRVALLEAQPPAPR--PADDAWDSRVYAISPSSQAFLERLGVWQALDAAR-L 77 (389)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCC--CCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHHC-C
T ss_conf 89998899990689999999998379--98899958998766--6666767517898899999999879854555432-6
Q ss_pred CEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECC
Q ss_conf 22436699997799767736543565446788268888898999999998749533068224347762776201454124
Q gi|254781024|r 83 TVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGE 162 (554)
Q Consensus 83 ~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~ 162 (554)
.++..-.++ -.....+.+.... .. ...-.|++.+..+.+.|.+.+...+.....+.+++.+..++++..+ .+.
T Consensus 78 ~p~~~~~~~-~~~~~~~~~~~~~--~~-~~~~~~ii~~~~l~~~L~~~~~~~~~i~~~~~~~~~~~~~~~~v~v--~~~- 150 (389)
T PRK07608 78 APVYDMRVY-GDAHGRLHFSAYQ--AA-VPQLAWIVESSLIERALDAALRFQGNLTWFDARAQGLDVTPDAATL--TLS- 150 (389)
T ss_pred CEEEEEEEE-CCCCCEEECCCCC--CC-CCCEEEEEEHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCEEE--EEC-
T ss_conf 406789996-4778546346333--58-9841444107999999999986189869988788899972991799--988-
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 32443466578756302677425786066443255421122489988889899889888875165667888089950434
Q gi|254781024|r 163 KGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWP 242 (554)
Q Consensus 163 ~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~ 242 (554)
.+.+++|+++|+|||++|.|+++++..+.-... .|. ++ +..+..+....+..+..+
T Consensus 151 --------------~g~~i~a~llVgADG~~S~vR~~~gi~~~~~~y--~~~---~~--v~~~~~~~~~~~~a~~~f--- 206 (389)
T PRK07608 151 --------------DGQVLEADLVVGADGAHSWVRSQAGIKVERRPY--RQT---GV--VANFKAERPHRETAYQWF--- 206 (389)
T ss_pred --------------CCCEEEEEEEEEECCCCHHHHHHCCCCCCCCCC--CCE---EE--EEEEEECCCCCCEEEEEE---
T ss_conf --------------998999658999669976888741888766210--314---89--999972377642579996---
Q ss_pred CCCCCCCCEEEEECCCCEEEEEEEECCCCCCC--CCCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCC
Q ss_conf 76876641257664798059999832666566--8898899999860800456503882630351340054212487423
Q gi|254781024|r 243 LDMNTSGGGFVYHFDDNLVSIGFVLHLDYRNP--WISAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKLS 320 (554)
Q Consensus 243 ~~~~~~gggwiy~~~d~~~~iG~v~~ld~~~~--~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~ 320 (554)
.. .+---++|.+++..++-+....+..+. ..++.+..+.+.... ...+..-+.+. .....|.. ....++++
T Consensus 207 ~~---~g~~a~lP~~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~l~-~~~a~~~~ 279 (389)
T PRK07608 207 RD---GEILALLPLPDGHVSMVWSARTAHADELLALSPAQLAAEVERAA--GGRLGALRCVT-PAAGFPLA-LQRVDRLV 279 (389)
T ss_pred CC---CCCEEEEECCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHHH--CCCCCCCEEEC-CCCCCCHH-HHHHHHHH
T ss_conf 18---97279987699738999806803367775099999999999862--34456515642-44344076-55256641
Q ss_pred CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 08879961232331366435226899999999999999874588653--036789986420466788874225668876
Q gi|254781024|r 321 FPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHD--DPIEIEDSWRQTQIGKDLWIIRNIKPLLSR 397 (554)
Q Consensus 321 ~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~--~l~~Ye~~~~~s~~~~el~~~rn~~~~~~~ 397 (554)
.++++|+||||..+.|+-|-|.+.||..+...|+.+.++...++..+ .|.+|++.-+.. ...=+.-...+...|+.
T Consensus 280 ~~rv~LiGDAAH~~~P~~GQG~N~gi~Da~~La~~L~~~~~~~~~g~~~~L~~Ye~~R~~~-~~~~~~~t~~l~~~f~~ 357 (389)
T PRK07608 280 APRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFRDLGDLRLLRRYERARRED-ILALMVATDGLQRLFGL 357 (389)
T ss_pred CCCEEEECCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCC
T ss_conf 2652565140205796403338688999999999986263578855199999999999999-99999999999999879
No 17
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.95 E-value=1.5e-24 Score=189.46 Aligned_cols=324 Identities=16% Similarity=0.085 Sum_probs=190.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC----CCCEECHHHHHHH--CCCHHHHCCCCCCCEEEE
Q ss_conf 6477999897689999999998089973999978677898640----2740333678886--787264148854322436
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL----SGAIIDPIGIDSL--LPRWREDKGHPFHTVVKR 87 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~----sG~vl~p~aL~eL--~Pd~~e~~g~pl~~~v~~ 87 (554)
.|||+||||||+|+++|+.|++.| ++|+||||...|+.+.- -.-.+.+.+++-| +--|.+... .-..++..
T Consensus 6 ~~DV~IvGaGp~Gl~lA~~L~~~G--~~v~liE~~~~~~~~~~~~~~R~~al~~~s~~~L~~lGl~~~i~~-~~~~p~~~ 82 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAG--LSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRA-ARVQPYRR 82 (392)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHH-CCCCCEEE
T ss_conf 998899990699999999998669--978999178987555688873699998899999998798166775-16773135
Q ss_pred EEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCC
Q ss_conf 69999779976773654356544678826888889899999999874953306822434776277620145412432443
Q gi|254781024|r 88 DLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNY 167 (554)
Q Consensus 88 d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k 167 (554)
-.++-.+....+.++.... -...-+|++.+..+...|.+...+.++++..+.+++++..++++.. +...
T Consensus 83 ~~v~d~~~~~~~~~~~~~~---~~~~lg~iv~~~~l~~~L~~~~~~~~v~~~~~~~v~~~~~~~~~v~--v~~~------ 151 (392)
T PRK08773 83 MRVWDAGGGGELGFDADTL---GREQLGWIVENDLLVDRLWAAVHAAGIQLHCPARVVELEQDADGVR--LRLD------ 151 (392)
T ss_pred EEEEECCCCCEEEECHHHC---CCCCCCCEEEHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCEEE--EEEC------
T ss_conf 8998458983475365662---8545653225499999999998608998974868999996698589--9977------
Q ss_pred CCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 46657875630267742578606644325542112248998888989988988887516566788808995043476876
Q gi|254781024|r 168 DGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMNT 247 (554)
Q Consensus 168 ~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~~ 247 (554)
.|.+++|+++|+|||++|.+++.++..+.-... .|... +..+..+.......+..+. +
T Consensus 152 ---------dg~~i~a~lvVgaDG~~S~vR~~~gi~~~~~~y--~q~~l-----v~~v~~~~~~~~~a~~~f~------~ 209 (392)
T PRK08773 152 ---------DGSRLEAALAIAADGAASTLRELAGLPVSRHDY--AQRGV-----VAFVDTEHPHQATAWQRFL------T 209 (392)
T ss_pred ---------CCCEEEEEEEEECCCCCCHHHHHCCCCCCCCCC--CEEEE-----EEEEEECCCCCCEEEEEEC------C
T ss_conf ---------997999889998378874767741888535886--50699-----9999705777615799961------8
Q ss_pred CCCEEEEECCCCEEEEEEEECCCCCCC--CCCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCCCEE
Q ss_conf 641257664798059999832666566--889889999986080045650388263035134005421248742308879
Q gi|254781024|r 248 SGGGFVYHFDDNLVSIGFVLHLDYRNP--WISAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKLSFPGGS 325 (554)
Q Consensus 248 ~gggwiy~~~d~~~~iG~v~~ld~~~~--~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~g~l 325 (554)
.|---++|+.+++.++.+.+..+.... ..+..+..+.+... +...+..-+... .....|... ...++++.++++
T Consensus 210 ~Gp~a~lP~~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~g~~~~~~-~~~~~pl~~-~~a~~~~~~Rv~ 285 (392)
T PRK08773 210 TGPLAFLPFADGRSSIVWTLPDAEAERVLALDDADFSRELTQA--FAARLGEVRVAS-PRTAFPLQR-QLVQQYVSGRVL 285 (392)
T ss_pred CCCEEEEECCCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHHH--HHHHCCCEEEEC-CCEECCHHH-HHHHHHCCCCEE
T ss_conf 9967998769997799997783667877549968999999998--620046416740-422221776-553341378689
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CC--CHHHHHHHHH
Q ss_conf 9612323313664352268999999999999998745886-53--0367899864
Q gi|254781024|r 326 LIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKK-HD--DPIEIEDSWR 377 (554)
Q Consensus 326 LvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~-~~--~l~~Ye~~~~ 377 (554)
|+||||..+.|+.|-|++.++......++.+.++...+.. .. .|.+|++.-+
T Consensus 286 LiGDAAH~~~P~aGQG~Nlgl~Da~~L~~~L~~a~~~~~~~~~~~~L~~Y~~~R~ 340 (392)
T PRK08773 286 TLGDAAHVVHPLAGQGVNLGLRDVAALQQLVREAHARRADWAAPHRLQRWARTRR 340 (392)
T ss_pred EEECHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 9610442779641553405599999999999999853998556999999999999
No 18
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.95 E-value=8.3e-25 Score=191.31 Aligned_cols=338 Identities=17% Similarity=0.172 Sum_probs=198.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHH-----CCCHHHHCCCCCCCEEEEE
Q ss_conf 64779998976899999999980899739999786778986402740333678886-----7872641488543224366
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSL-----LPRWREDKGHPFHTVVKRD 88 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL-----~Pd~~e~~g~pl~~~v~~d 88 (554)
..+|+||||||||+++|+.|+|.| ++|.|+||...++. .-.|-.|.|.+++-| ....++ .+. ..+
T Consensus 4 ~~~V~IVGaGiaGL~lA~~L~r~G--i~v~V~Er~~~~~~-~G~gi~l~pn~~~~L~~lGl~~~~~~-~~~------~~~ 73 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQG--IKVKLLEQAAEIGE-IGAGIQLGPNAFSALDALGVGEAARQ-RAV------FTD 73 (396)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CCEEEECCCCCCCC-CCCEEEECHHHHHHHHHCCCHHHHHH-HCC------CCC
T ss_conf 984999897889999999999789--99999917998887-87188989899999998799089983-166------766
Q ss_pred EEEEECC-CC--CEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCC-CEECCCCEEEEEEECCCCCEEEEEECCCC
Q ss_conf 9999779-97--67736543565446788268888898999999998749-53306822434776277620145412432
Q gi|254781024|r 89 LYWFLNA-QR--SIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALG-VEIYCGFTATEIYYGKKGEALGILTGEKG 164 (554)
Q Consensus 89 ~~~~l~~-~~--~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~G-vei~~g~~v~~i~~~e~g~vvgv~t~~~G 164 (554)
.+.+... ++ -.+++...........+..++.|..+-+.|.+.+++.+ +++..+.+++.+..++++ +.+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~R~~L~~~Ll~~~~~~~~v~i~~~~~v~~v~~~~~~--v~v~~~--- 148 (396)
T PRK08163 74 HLTMMDAVDAEEVVRIPTGQAFRDRFGNPYAVIHRADIHLSLLEAVQDHPLVEFRTSTHVVGIEQDGDG--VTVFDQ--- 148 (396)
T ss_pred CEEEEECCCCCEEEEECCCCHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCE--EEEEEC---
T ss_conf 259997688858885047604566249972687799999999999985698178709999999953997--999988---
Q ss_pred CCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHH-HHHHHHHHHCCCCCCCCEEE-EEECCC
Q ss_conf 4434665787563026774257860664432554211224899888898998-89888875165667888089-950434
Q gi|254781024|r 165 KNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFG-LGIKELWKIKPQYHRRGLAL-HSIGWP 242 (554)
Q Consensus 165 ~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~-~gvke~~ei~~~~~~~G~~~-h~~g~~ 242 (554)
.|.++++++||+|||.+|.+++++.... |+..+ ..+..+ ++.+........ ....|.
T Consensus 149 ------------dG~~~~adlvVGADG~~S~vR~~l~~~~-------~~~~g~~~~r~~--~~~~~~~~~~~~~~~~~~~ 207 (396)
T PRK08163 149 ------------QGNRWTGDALIGCDGVKSVVRQQLVGDA-------PRVTGHVVYRAV--IDVDDMPEDLRINAPVLWA 207 (396)
T ss_pred ------------CCCEEEEEEEEECCCCCCHHHHHHCCCC-------CCCCCEEEEEEE--EECCCCCHHHCCCCEEEEE
T ss_conf ------------9989987699964887736889836998-------642451799999--8702385001357408985
Q ss_pred CCCCCCCCEEEEECCCCE-EEEEEEECCCC----CCCCCCHHHHHHHHHH-CCCHHHHHCCCCEECCCCEECCCCCCCCC
Q ss_conf 768766412576647980-59999832666----5668898899999860-80045650388263035134005421248
Q gi|254781024|r 243 LDMNTSGGGFVYHFDDNL-VSIGFVLHLDY----RNPWISAYEELQRFKT-HPDIRIIFTEGERLEYGARVISEGGWQSV 316 (554)
Q Consensus 243 ~~~~~~gggwiy~~~d~~-~~iG~v~~ld~----~~~~~~~~~~lq~fk~-hp~i~~~l~gg~~~~yga~~ip~gg~~s~ 316 (554)
++......||..++. .++-.....+. .....+..+..+.|.. +|.+..++....... ..+......+
T Consensus 208 ---g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~ll~~~~~~~----~~~~~~~~~~ 280 (396)
T PRK08163 208 ---GPHCHLVHYPLRGGEQYNLVVTFHSREQEEWGVKDGSKEEVLSYFEGIHPRPRQMLDKPTSWK----RWATADREPV 280 (396)
T ss_pred ---CCCCEEEEEECCCCCEEEEEEEECCCCCCHHCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCEE----EEEEECCCCH
T ss_conf ---699459998768994899999945777200036866899999987533767999982755222----3445303421
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74230887996123233136643522689999999999999987458865303678998642046678887422566887
Q gi|254781024|r 317 PKLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEIEDSWRQTQIGKDLWIIRNIKPLLS 396 (554)
Q Consensus 317 pk~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~~Ye~~~~~s~~~~el~~~rn~~~~~~ 396 (554)
++.+.++++|+||||.-+.|..|.|.+.||+.+...|+.+.+. .++..+.|..||+.-+. -..+=-+.+|+.+..+|
T Consensus 281 ~~w~~gRv~LiGDAAH~m~P~~GQGan~aieDA~~La~~L~~~--~~~~~~al~~Ye~~R~p-R~~~v~~~s~~~~~~~h 357 (396)
T PRK08163 281 AKWSTGRATLLGDAAHPMTQYMAQGACMALEDAVTLGAALERC--DGDFEAAFALYESVRIP-RTARVVLSAREMGRIYH 357 (396)
T ss_pred HHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHC
T ss_conf 1203784898504024679853661878999999999999767--88899999999999999-99999999999899868
Q ss_pred H
Q ss_conf 6
Q gi|254781024|r 397 R 397 (554)
Q Consensus 397 ~ 397 (554)
.
T Consensus 358 ~ 358 (396)
T PRK08163 358 A 358 (396)
T ss_pred C
T ss_conf 8
No 19
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.95 E-value=4.6e-25 Score=193.08 Aligned_cols=332 Identities=15% Similarity=0.097 Sum_probs=186.9
Q ss_pred HCC-CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHH--CCCHHHH--CCCCCCCEE
Q ss_conf 103-64779998976899999999980899739999786778986402740333678886--7872641--488543224
Q gi|254781024|r 11 DVF-EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSL--LPRWRED--KGHPFHTVV 85 (554)
Q Consensus 11 e~m-eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL--~Pd~~e~--~g~pl~~~v 85 (554)
+++ ||||+||||||+|+++|..|++.| ++|+||||...+-.+. -+..+.+++++-| +--+.+. .+.|.
T Consensus 8 ~~~~d~dVlIVGaGPvGL~lA~~Lar~G--i~v~vvEr~~~~~~~p-rA~~l~~rtleil~~lGl~~~i~~~~~~~---- 80 (554)
T PRK06183 8 ASAHDTDVVIVGAGPVGLTLANLLGQQG--VRVLVLERWPTLYDYP-RAVGIDDEALRTFQSIGLVDEVLPHTTPN---- 80 (554)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCC-CEEEECHHHHHHHHHCCCHHHHHHCCCCC----
T ss_conf 7989888899995989999999999779--9999991899988888-68998999999999878989998418414----
Q ss_pred EEEEEEEECCCCCE--ECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHC-CCEECCCCEEEEEEECCCCCEEEEEECC
Q ss_conf 36699997799767--73654356544678826888889899999999874-9533068224347762776201454124
Q gi|254781024|r 86 KRDLYWFLNAQRSI--QIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEAL-GVEIYCGFTATEIYYGKKGEALGILTGE 162 (554)
Q Consensus 86 ~~d~~~~l~~~~~~--~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~e~g~vvgv~t~~ 162 (554)
..+.+.+.++.. .++....+..+ ...+.+.+..+.+.|.+.+++. |+++..++.+.++..++++..+.++...
T Consensus 81 --~~~~~~~~~g~~~~~~~~~~~~~~~--p~~~~~~Q~~lE~~L~~~l~~~~g~~v~~g~~v~~~~qd~~~V~v~~~~~~ 156 (554)
T PRK06183 81 --HGMRFLDAKGRCLADIAPTTDEFGW--PRRNAFYQPLLEAVLREGLARFPHVRVRFGHEVVALEQDDDGVTVTLTDAD 156 (554)
T ss_pred --CEEEEEECCCCEEEEECCCCCCCCC--CEEEEECHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCCEEEEEEECC
T ss_conf --3189994899789972687665687--714461099999999999986899899938899999971884279999779
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC--CCCCCCEEEEEEC
Q ss_conf 32443466578756302677425786066443255421122489988889899889888875165--6678880899504
Q gi|254781024|r 163 KGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKP--QYHRRGLALHSIG 240 (554)
Q Consensus 163 ~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~--~~~~~G~~~h~~g 240 (554)
.| ...+++|+|+|+|||++|.|+++++..+.-. .-++.|.+ ..+.. ........+...
T Consensus 157 ~g------------~~~~ira~ylVGaDGa~S~VR~~lgi~~~g~--~~~~~~lv-----~dv~~~~~~~~~~~~~~~~- 216 (554)
T PRK06183 157 DG------------QRETVRARYVVGCDGANSFVRRTLGVSFEGL--TFPERWLV-----VDVANDPLLGLGPHTYQYC- 216 (554)
T ss_pred CC------------CEEEEEEEEEEECCCCCCHHHHHCCCCCCCC--CCCEEEEE-----EEEECCCCCCCCCEEEEEE-
T ss_conf 99------------5799997689971788707899749985368--77707999-----9985278767897289997-
Q ss_pred CCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCEECCC-CEECCCCCCCCCCCC
Q ss_conf 3476876641257664798059999832666566889889999986080045650388263035-134005421248742
Q gi|254781024|r 241 WPLDMNTSGGGFVYHFDDNLVSIGFVLHLDYRNPWISAYEELQRFKTHPDIRIIFTEGERLEYG-ARVISEGGWQSVPKL 319 (554)
Q Consensus 241 ~~~~~~~~gggwiy~~~d~~~~iG~v~~ld~~~~~~~~~~~lq~fk~hp~i~~~l~gg~~~~yg-a~~ip~gg~~s~pk~ 319 (554)
++.....+++..++....-+....+.........+.++++. .........++.- ....+.. .+...++
T Consensus 217 -----~p~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~e~~~~~~-----~~~~~~~~~~~i~~~~~~~~~-~rvA~~~ 285 (554)
T PRK06183 217 -----DPARPYTSVPGGHGRRRWEFMVLPGETEEELATPENLRRLL-----APWVPDPDDVELIRHAVYTFH-ARVAERW 285 (554)
T ss_pred -----CCCCCEEEEECCCCEEEEEEEECCCCCHHHCCCHHHHHHHH-----HHHCCCCCCEEEEEEEECCHH-HHHHHHH
T ss_conf -----59998899976898599999957999814428989999999-----986599874489998860045-5546652
Q ss_pred CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3088799612323313664352268999999999999998745886530367899864204667888
Q gi|254781024|r 320 SFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEIEDSWRQTQIGKDLW 386 (554)
Q Consensus 320 ~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~~Ye~~~~~s~~~~el~ 386 (554)
..++++|+||||....|+-|-|++++|..+.=.|--++..+...-....|..|+..-+. +.+++-
T Consensus 286 ~~gRVfLaGDAAH~~~P~gGqGmNtGi~DA~NLaWKLA~V~~G~a~~~LLdtY~~ERrp--~a~~~i 350 (554)
T PRK06183 286 RSGRVLLAGDAAHLMPPFQGQGMNSGIRDAANLAWKLALVLQGRAGDALLDTYEQERRP--HARAMI 350 (554)
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH--HHHHHH
T ss_conf 35978997600013698645655563777999999999996689985887777999899--999999
No 20
>PRK07588 hypothetical protein; Provisional
Probab=99.95 E-value=2e-24 Score=188.66 Aligned_cols=340 Identities=15% Similarity=0.137 Sum_probs=195.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEE--CHHHHHHH-----CCCHHHHCCCCCCCEEEEEE
Q ss_conf 799989768999999999808997399997867789864027403--33678886-----78726414885432243669
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAII--DPIGIDSL-----LPRWREDKGHPFHTVVKRDL 89 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl--~p~aL~eL-----~Pd~~e~~g~pl~~~v~~d~ 89 (554)
|+||||||||+++|+.|+|.| ++|.|+||.+.++.- |..+ .+.+++-| ++..+ ..+.+ .+.
T Consensus 3 VlIvGaGiaGLalA~~L~r~G--~~v~V~Er~~~~r~~---G~~i~l~~~~~~vl~~lGl~d~l~-~~~~~------~~~ 70 (391)
T PRK07588 3 IAISGAGIAGATLAHWLQRTG--HEPTLIERAPKLRTG---GYMVDFWGVGYEVAKRMGITDQLA-EAGYQ------IEH 70 (391)
T ss_pred EEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCC---CEEEEECCHHHHHHHHCCCHHHHH-HCCCC------CEE
T ss_conf 999993289999999998689--998999038988877---338723839999999879938998-52788------506
Q ss_pred EEEECCCCCEE--CCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCC
Q ss_conf 99977997677--3654356544678826888889899999999874953306822434776277620145412432443
Q gi|254781024|r 90 YWFLNAQRSIQ--IPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNY 167 (554)
Q Consensus 90 ~~~l~~~~~~~--~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k 167 (554)
+.+.+.++... ++.... ........+.+.|..+.+.|.+.++ .+++++.+.+++.+..++++. .|...
T Consensus 71 ~~~~~~~G~~~~~~~~~~~-~~~~~~~~~~i~R~dL~~~L~~~~~-~~v~v~~g~~v~~i~~~~dgV--~v~f~------ 140 (391)
T PRK07588 71 IRSVGPTGRVKADLNVDVF-RRMVGDDFTSLPRGDLAATIYTTIE-GQVETIFDDSIATIDEHRDGV--RLTLE------ 140 (391)
T ss_pred EEEECCCCCEEEECCCHHH-CCCCCCCCEEECHHHHHHHHHHHCC-CCCEEEECCEEEEEEECCCEE--EEEEC------
T ss_conf 9999999988874371231-1134775214539999999997514-487899799999999629958--99987------
Q ss_pred CCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHH-HHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf 4665787563026774257860664432554211224899888898998898888-751656678880899504347687
Q gi|254781024|r 168 DGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKEL-WKIKPQYHRRGLALHSIGWPLDMN 246 (554)
Q Consensus 168 ~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~-~ei~~~~~~~G~~~h~~g~~~~~~ 246 (554)
.|...++++||+|||.+|.+++.+... ...+.. .++..-. +.++...+...... ..| ..
T Consensus 141 ---------dG~~~~~DlvVGADGi~S~vR~~~~g~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~---~~ 200 (391)
T PRK07588 141 ---------RGTPRDFDLVIGADGLHSHVRRLVFGP-----ERDFEH-YLGCKVAACVVDGYRPRDERTY--VLY---NT 200 (391)
T ss_pred ---------CCCEEEEEEEEECCCCCCHHHHHHCCC-----CCCCCC-CEEEEEEEEEECCCCCCCCCEE--EEE---EC
T ss_conf ---------998888759995487640777874488-----888743-0248999998357677777479--999---86
Q ss_pred CCCCEEEEECCCCEEEEEEEECCCCCCCCCCHHHHH----HHHHH-CCCHHHHHCC---CCEECCCCEECCCCCCCCCCC
Q ss_conf 664125766479805999983266656688988999----99860-8004565038---826303513400542124874
Q gi|254781024|r 247 TSGGGFVYHFDDNLVSIGFVLHLDYRNPWISAYEEL----QRFKT-HPDIRIIFTE---GERLEYGARVISEGGWQSVPK 318 (554)
Q Consensus 247 ~~gggwiy~~~d~~~~iG~v~~ld~~~~~~~~~~~l----q~fk~-hp~i~~~l~g---g~~~~yga~~ip~gg~~s~pk 318 (554)
+..-...|+..++....-++...+..+...++.+.. +.|.. .+.+.+.+.. .+...+. .+. . ..+++
T Consensus 201 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~il~~~~~~~~~~~~--~~~--~-~~~~~ 275 (391)
T PRK07588 201 VDKQVARVALRGDRTLFLFIFRAEHDNPPLTPKEEKQLLRDQFGDVGWESRDILAALDDVDDLYFD--VVS--Q-IRMDR 275 (391)
T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEC--CCC--C-CCCCC
T ss_conf 998899998269928999999678778888817799999998644486338999754663002532--000--1-32443
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23088799612323313664352268999999999999998745886530367899864204667888742256688761
Q gi|254781024|r 319 LSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEIEDSWRQTQIGKDLWIIRNIKPLLSRF 398 (554)
Q Consensus 319 ~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~~Ye~~~~~s~~~~el~~~rn~~~~~~~~ 398 (554)
.+..+++|+||||.-+.|+.|.|.+.||+.+...|+.+.++ .+|....|..||++.|. .+.+--+..+++...|+-
T Consensus 276 W~~GRV~LlGDAAH~~~P~~GqGan~AieDA~vLA~~L~~~--~~d~~~Al~~YE~~rrp-~v~~~q~~~~~~~~~~~p- 351 (391)
T PRK07588 276 WSRGRVLLVGDAAACISLLGGEGTGLAITEAYVLAGELARA--GGDHRRAFDAYEKRLRP-FIAGKQASAAKFLWVFAS- 351 (391)
T ss_pred CCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHCH-HHHHHHHHHHHCCCCCCC-
T ss_conf 43598899715556679976623879999999999999874--89989999999997678-999998756512311159-
Q ss_pred CHHHHHHHH
Q ss_conf 604689998
Q gi|254781024|r 399 GVFIGLSLG 407 (554)
Q Consensus 399 g~~~g~~~~ 407 (554)
....|..+.
T Consensus 352 ~~~~~~~~~ 360 (391)
T PRK07588 352 DTIFGKYFS 360 (391)
T ss_pred CCHHHHHHH
T ss_conf 988999999
No 21
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.95 E-value=3.5e-24 Score=186.95 Aligned_cols=344 Identities=19% Similarity=0.135 Sum_probs=192.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC-CCCCCEECHHHHHHH--CCCHHHH--CCCCCCCEEEEE
Q ss_conf 64779998976899999999980899739999786778986-402740333678886--7872641--488543224366
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAH-ILSGAIIDPIGIDSL--LPRWRED--KGHPFHTVVKRD 88 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~-i~sG~vl~p~aL~eL--~Pd~~e~--~g~pl~~~v~~d 88 (554)
|.||+||||||+|+++|+.|++.|.+++|+++|+....... ..-+-.+.+.+++-| +-=|.+. ...|+...+..+
T Consensus 1 ~~DV~IVGaGpvGl~lAl~L~~~G~~~~v~vie~~~~~~~~~d~Ra~al~~~s~~~L~~lGv~~~l~~~~~~i~~~~v~d 80 (403)
T PRK07333 1 QRDVVIAGGGYVGLALAVALKQAAPHLPVIVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWQEIAPEAQPITDMVITD 80 (403)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCEEEEEEE
T ss_conf 98399999469999999999846999669998288666878887688867999999998798788775161002799984
Q ss_pred E-EEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCC
Q ss_conf 9-999779976773654356544678826888889899999999874953306822434776277620145412432443
Q gi|254781024|r 89 L-YWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNY 167 (554)
Q Consensus 89 ~-~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k 167 (554)
. .........+.+.....+ ...-.|++.+..+.+.|.+++++.+++++.++++.++..++++..+ ...+
T Consensus 81 ~~~~~~~~~~~l~f~~~~~~---~~~~~~~v~~~~l~~~L~~~~~~~~v~~~~~~~v~~i~~~~~~v~v--~l~~----- 150 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEP---GEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTV--TLAD----- 150 (403)
T ss_pred CCCCCCCCCCCCCCCCCCCC---CCCCEEEEEHHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCEEEE--EECC-----
T ss_conf 65577666420024643456---8873687458999999999998289989858857899974980799--9789-----
Q ss_pred CCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 46657875630267742578606644325542112248998888989988988887516566788808995043476876
Q gi|254781024|r 168 DGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMNT 247 (554)
Q Consensus 168 ~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~~ 247 (554)
+..++|+++|+|||++|.|+++++..+.-... .|+.. ++.+..+....+..+..+ .+
T Consensus 151 ----------g~~i~a~llIgaDG~~S~VR~~lgi~~~~~~y--~q~~i-----v~~v~~~~~~~~~a~~~f---~~--- 207 (403)
T PRK07333 151 ----------GSTLEARLLVAADGARSKLRELAGIKTVGWDY--GQSGI-----VCTVEHERPHGGRAEEHF---LP--- 207 (403)
T ss_pred ----------CCEEEEEEEEECCCCCHHHHHHCCCCCCCCCC--CCEEE-----EEEECCCCCCCCEEEEEE---EC---
T ss_conf ----------98999869998348761325523987658777--74289-----973034577752058998---08---
Q ss_pred CCCEEEEECCCCEEEEEEEECCCCCCC--CCCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCCCEE
Q ss_conf 641257664798059999832666566--889889999986080045650388263035134005421248742308879
Q gi|254781024|r 248 SGGGFVYHFDDNLVSIGFVLHLDYRNP--WISAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKLSFPGGS 325 (554)
Q Consensus 248 ~gggwiy~~~d~~~~iG~v~~ld~~~~--~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~g~l 325 (554)
.|---+.|+.++..++-+....+.... ..+.....+.+... +...+..-..+. .....|.. ....++++.++++
T Consensus 208 ~Gp~a~lPl~~~~~s~vw~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~g~~~~~~-~~~~~~l~-~~~a~~~~~~rv~ 283 (403)
T PRK07333 208 AGPFAILPLKGNRSSLVWTERTADAERLVALDDLVFEAELEQR--FGHRLGELKVLG-KRRAFPLG-LTLARSFIAPRFA 283 (403)
T ss_pred CCCEEEEECCCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHHH--HCCCCCCEEECC-CCEEEEHH-HHHHHHHHCCCEE
T ss_conf 9866996469983355880577778876528989999999998--552355506714-62664177-7888886337726
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 961232331366435226899999999999999874588-65--30367899864204667888742256688
Q gi|254781024|r 326 LIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGK-KH--DDPIEIEDSWRQTQIGKDLWIIRNIKPLL 395 (554)
Q Consensus 326 LvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~-~~--~~l~~Ye~~~~~s~~~~el~~~rn~~~~~ 395 (554)
|+||||..+.|+-|-|++.++......|+.+.++...|. .. ..|.+|+++-+.. ...-+.....+...|
T Consensus 284 L~GDAAH~~~P~aGQGlNlgl~Da~~La~~L~~~~~~g~d~g~~~~L~~Y~~~R~~~-~~~~~~~~d~l~~lf 355 (403)
T PRK07333 284 LVGDAAHVIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQRWRRFD-TVAMGVTTDVLNKLF 355 (403)
T ss_pred EEHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 751136427985266041468999999999999986199965299999999998999-999999999999998
No 22
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.95 E-value=2.4e-24 Score=188.05 Aligned_cols=343 Identities=14% Similarity=0.112 Sum_probs=190.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHH--CCCHHHHCCCCCCCEEEEEEEEE
Q ss_conf 4779998976899999999980899739999786778986402740333678886--78726414885432243669999
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSL--LPRWREDKGHPFHTVVKRDLYWF 92 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL--~Pd~~e~~g~pl~~~v~~d~~~~ 92 (554)
.||+||||||||+++|+.|++.| ++|.|+||.+.++.. -.|-.|.|.+++-| +.-+.+... ..+....+.+
T Consensus 3 ~~VlIVGaGiaGL~~A~~L~~~G--~~v~V~E~~~~~~~~-G~gi~l~pn~~~~L~~lGl~~~l~~----~~~~~~~~~~ 75 (400)
T PRK06475 3 GSILIAGAGVAGLSAALELAARG--WAVTIIEKAQELSEV-GAGLQLAPNAMRHLERLGVADRLSG----TGVTPKALYL 75 (400)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CCEEEECCCCCCCCC-CCEEEECHHHHHHHHHCCCHHHHHH----CCCCCCEEEE
T ss_conf 97999895889999999999789--999999179988888-8478888899999998799278884----3888625999
Q ss_pred ECCCC-CE--ECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH-CCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCC
Q ss_conf 77997-67--7365435654467882688888989999999987-49533068224347762776201454124324434
Q gi|254781024|r 93 LNAQR-SI--QIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEA-LGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYD 168 (554)
Q Consensus 93 l~~~~-~~--~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~-~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~ 168 (554)
.+... .. ..+...........+.+.+.|..|-+.|.+.+.+ .|+++..+.+++++..++++..+.+...+
T Consensus 76 ~d~~~~~~~~~~~~~~~~~~~~~~p~~~i~R~~L~~~L~~~~~~~~~i~i~~g~~v~~~~~~~~~v~~~~~~~~------ 149 (400)
T PRK06475 76 MDGRKARPLLHMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTN------ 149 (400)
T ss_pred EECCCCCEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCCEEEEEECCC------
T ss_conf 60786745652024432222578965997789999999999974899489738789999952896048997389------
Q ss_pred CCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH---HHCCCC----CCCCEEEEEECC
Q ss_conf 6657875630267742578606644325542112248998888989988988887---516566----788808995043
Q gi|254781024|r 169 GTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELW---KIKPQY----HRRGLALHSIGW 241 (554)
Q Consensus 169 ~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~---ei~~~~----~~~G~~~h~~g~ 241 (554)
.+..++|++||+|||++|.+++.++.......+ + ++.+.+. .++... .....+.. |
T Consensus 150 --------~~~~~~adlvIGADGi~S~vR~~~~~~~~~~~g-----~-~~~r~~~~~~~~p~~~~~~~~~~~~~~~---~ 212 (400)
T PRK06475 150 --------SVETVSAAYLIACDGVWSMLRQKAGYSKARFSG-----H-IAWRTTLAADALPASFLSAMPEHKAVSA---W 212 (400)
T ss_pred --------CCEEEECCEEEECCCCCCCHHHHCCCCCCCCCC-----E-EEEEEEEECCCCCHHHHHHCCCCCEEEE---E
T ss_conf --------866997068996699763133315898787586-----3-8999998601265556540678770799---9
Q ss_pred CCCCCCCCCEEEEECCCCEE-EEEEEECC-CCC---CCCCCHHHHHHHHHH-CCCHHHHHCCCCEECCCCEECCCCCCCC
Q ss_conf 47687664125766479805-99998326-665---668898899999860-8004565038826303513400542124
Q gi|254781024|r 242 PLDMNTSGGGFVYHFDDNLV-SIGFVLHL-DYR---NPWISAYEELQRFKT-HPDIRIIFTEGERLEYGARVISEGGWQS 315 (554)
Q Consensus 242 ~~~~~~~gggwiy~~~d~~~-~iG~v~~l-d~~---~~~~~~~~~lq~fk~-hp~i~~~l~gg~~~~yga~~ip~gg~~s 315 (554)
. ++.+--.+||..++.. ++-.+... +.. ....++.+..+.|+. ++.+...+.......+ .|......
T Consensus 213 ~---g~~~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~ 285 (400)
T PRK06475 213 L---GNKAHFIAYPVKGGKFFNFVAITGGENPGEVWSKTGDKAHLKSIYADWNKPVLQILAAIDEWTY----WPLFEMAD 285 (400)
T ss_pred E---CCCCEEEEEECCCCCEEEEEEEECCCCCHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHCCEEE----EEEEEECC
T ss_conf 6---7997699998589968999997068880022035589999999986305479999985125046----43354023
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87423088799612323313664352268999999999999998745886530367899864204667888742256688
Q gi|254781024|r 316 VPKLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEIEDSWRQTQIGKDLWIIRNIKPLL 395 (554)
Q Consensus 316 ~pk~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~~Ye~~~~~s~~~~el~~~rn~~~~~ 395 (554)
.+....++++|+||||..+.|..|.|.+.||+.+...|+.+ ..++.++.|..||+.-+. -+.+=-+.+|.-+..|
T Consensus 286 ~~~~~~gRvvLiGDAAH~~~P~~GQGan~aieDA~~LA~~L----~~~~~~~al~~Ye~~R~~-R~~~v~~~s~~~~~~~ 360 (400)
T PRK06475 286 AQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEAL----DSDDQSAGLKRFDSVRKE-RIAAVAKRGQLNRFAY 360 (400)
T ss_pred CCEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_conf 43433784688403225569751013778999999999986----557899999999999999-9999999999979986
Q ss_pred HHHC
Q ss_conf 7616
Q gi|254781024|r 396 SRFG 399 (554)
Q Consensus 396 ~~~g 399 (554)
|.-|
T Consensus 361 h~~~ 364 (400)
T PRK06475 361 HATG 364 (400)
T ss_pred CCCC
T ss_conf 8998
No 23
>PRK06847 hypothetical protein; Provisional
Probab=99.95 E-value=4.3e-24 Score=186.35 Aligned_cols=331 Identities=17% Similarity=0.176 Sum_probs=185.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHH--CCCHHH--HCCCCCCCEEEEEEEE
Q ss_conf 779998976899999999980899739999786778986402740333678886--787264--1488543224366999
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSL--LPRWRE--DKGHPFHTVVKRDLYW 91 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL--~Pd~~e--~~g~pl~~~v~~d~~~ 91 (554)
.|+||||||||+++|+.|+|.| ++|.|+||...++.. -.|-.+.|.+++-| +.=|.+ ..+.|. +.+.
T Consensus 6 kV~IVGaG~aGL~lA~~L~~~G--i~v~V~E~~~~~~~~-g~gi~l~~~~~~~L~~lGl~~~i~~~~~~~------~~~~ 76 (375)
T PRK06847 6 KVLIVGGGIGGMSAAIALRKAG--ISVDLVEIDPEWRPY-GAGITLQGNTLRALKELGVLDECLEHGFGF------DGVD 76 (375)
T ss_pred EEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCC-CEEEEECHHHHHHHHHCCCHHHHHHHCCCC------CEEE
T ss_conf 7999996689999999999679--999999089998888-608988989999999879958999607885------2299
Q ss_pred EECCCCCE--ECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCC
Q ss_conf 97799767--7365435654467882688888989999999987495330682243477627762014541243244346
Q gi|254781024|r 92 FLNAQRSI--QIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDG 169 (554)
Q Consensus 92 ~l~~~~~~--~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~ 169 (554)
+.+.++.. .++.... ......+.+.+.|..|.+.|.+.+++.|+++..+++++++..++++ +.+...+
T Consensus 77 ~~~~~G~~~~~~~~~~~-~~~~~~~~~~i~r~~L~~~L~~~~~~~~~~v~~~~~v~~i~~~~~~--v~v~~~d------- 146 (375)
T PRK06847 77 IFDPAGHLLAEVPTPRV-AGDDVPGGGGIMRPTLARILADAARASGVDVRLGTTVTAIEQDDDG--VDVTFTD------- 146 (375)
T ss_pred EEECCCCEEEEECCHHH-CCCCCCCEEEEEHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCE--EEEEECC-------
T ss_conf 99689988998343120-3566772127709999999999898469979966589786664985--8999858-------
Q ss_pred CCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC-CCCCCCEEEEEECCCCCCCCC
Q ss_conf 6578756302677425786066443255421122489988889899889888875165-667888089950434768766
Q gi|254781024|r 170 TQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKP-QYHRRGLALHSIGWPLDMNTS 248 (554)
Q Consensus 170 ~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~-~~~~~G~~~h~~g~~~~~~~~ 248 (554)
|.++++++||+|||++|.+++++..... .++ | .+. .+|.... .......... |. ...
T Consensus 147 --------G~~~~adllIGADG~~S~vR~~l~~~~~-----~~~-~-~g~-~~~~~~~p~~~~~~~~~~---~~---~~~ 204 (375)
T PRK06847 147 --------GTTGRYDLVVGADGVYSKVRSLVFPEEP-----KPE-Y-TGQ-GVWRAVLPRPAEIDRTLM---YL---GGT 204 (375)
T ss_pred --------CCEEEEEEEEECCCCCCHHHHHHCCCCC-----CCC-C-CCE-EEEEEEECCCCCCCCEEE---EE---CCC
T ss_conf --------9889987999857876278897277777-----870-4-233-899999168767784399---99---699
Q ss_pred CCEEEEECCCCEEEEEEEECCCCCCCCCCHH---HHHHH-HHHC--CCH---HHHHCCCCEECCCCEECCCCCCCCCCCC
Q ss_conf 4125766479805999983266656688988---99999-8608--004---5650388263035134005421248742
Q gi|254781024|r 249 GGGFVYHFDDNLVSIGFVLHLDYRNPWISAY---EELQR-FKTH--PDI---RIIFTEGERLEYGARVISEGGWQSVPKL 319 (554)
Q Consensus 249 gggwiy~~~d~~~~iG~v~~ld~~~~~~~~~---~~lq~-fk~h--p~i---~~~l~gg~~~~yga~~ip~gg~~s~pk~ 319 (554)
+...++|..++...+- +......+....+. +.+.+ +... +.. ...+.....+.+ + |.......++.
T Consensus 205 ~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~w 279 (375)
T PRK06847 205 GKAGVNPLSEDEMYMF-VTEPRPSDDRIEPATWPDRLRELLAPFGGPVLEALTEHITEDAHVVY--R--PLEQLLVPEPW 279 (375)
T ss_pred CEEEEEECCCCEEEEE-EEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEE--E--EHHHHCCCCCC
T ss_conf 4499998379919999-99468631246831379999999865476578899876055554366--4--64451156640
Q ss_pred CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 30887996123233136643522689999999999999987458865303678998642046678887422566887
Q gi|254781024|r 320 SFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEIEDSWRQTQIGKDLWIIRNIKPLLS 396 (554)
Q Consensus 320 ~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~~Ye~~~~~s~~~~el~~~rn~~~~~~ 396 (554)
+.++++|+||||..+.|+.|.|.+.||..+...|+.+.. .++..+.|..||++-+. -..+-...+|.+--.+.
T Consensus 280 ~~gRv~LiGDAAH~~~P~~GqG~N~aieDA~~La~~La~---~~~~~~aL~~Ye~~R~~-r~~~vv~~s~~~gr~~~ 352 (375)
T PRK06847 280 HRGRVVLIGDAVHATTPHLASGAGMAIEDAIVLAEELAR---HDDLEAALQAYQERRWE-RCRMVVENSARIGRIEI 352 (375)
T ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_conf 248799998011237985235888999999999999807---99989999999999999-99999999999756886
No 24
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.95 E-value=6.1e-24 Score=185.26 Aligned_cols=323 Identities=16% Similarity=0.160 Sum_probs=185.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCC-CEEEEEECCCCCCCCC----CCCCEECHHHHHHH--CCCHHH--HCCCCCCCE
Q ss_conf 64779998976899999999980899-7399997867789864----02740333678886--787264--148854322
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPH-LSVVILEKSAEVGAHI----LSGAIIDPIGIDSL--LPRWRE--DKGHPFHTV 84 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~-l~VlvlEK~~~pG~~i----~sG~vl~p~aL~eL--~Pd~~e--~~g~pl~~~ 84 (554)
+|||+||||||+|+++|+.|+++|++ ++|.|+|+........ .-+-.+.+.+++-| +-=|.+ ..+.|+.
T Consensus 3 ~~DV~IvGaGp~Gl~lAl~L~~~g~~~~~v~viE~~~~~~~~~~~~d~Ra~al~~~s~~~L~~lGl~~~l~~~~~pi~-- 80 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGRLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPIR-- 80 (395)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCE--
T ss_conf 189899993899999999999618899749999378854456888774478888999999998799288786276542--
Q ss_pred EEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHC-CCEECCCCEEEEEEECCCCCEEEEEECCC
Q ss_conf 43669999779976773654356544678826888889899999999874-95330682243477627762014541243
Q gi|254781024|r 85 VKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEAL-GVEIYCGFTATEIYYGKKGEALGILTGEK 163 (554)
Q Consensus 85 v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~e~g~vvgv~t~~~ 163 (554)
.-.++-......+.+.... .....-.|++....+.+.|.+.+.+. +++++.+..+.++..++++..+... +
T Consensus 81 --~i~v~d~~~~~~~~~~~~~---~~~~~lg~~v~~~~l~~~L~~~l~~~~~v~~~~~~~v~~i~~~~~~v~v~l~--~- 152 (395)
T PRK05732 81 --HIHVSDRGHAGFVRLDAED---YGVDALGYVVELADVGQRLFALLDKAPGVTLHCPARVANVERTQDGVRVTLD--D- 152 (395)
T ss_pred --EEEEEECCCCCCEECCHHH---CCCCCCCCEEEHHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCCEEEEEC--C-
T ss_conf --8998406867721056332---3876565432369999999998840899699769889999982892799987--9-
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 24434665787563026774257860664432554211224899888898998898888751656678880899504347
Q gi|254781024|r 164 GKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPL 243 (554)
Q Consensus 164 G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~ 243 (554)
+.+++|+++|+|||++|.++++++..+.-... .|++. +..+..+....+..+..+.
T Consensus 153 --------------g~~i~a~lvVgADG~~S~vR~~lgi~~~~~~y--~~~~l-----v~~v~~~~~~~~~a~~~f~--- 208 (395)
T PRK05732 153 --------------GETLTARLLVAADGTHSALREQLGIDWQQHPY--EQVAV-----IANVTTSEAHQGRAFERFT--- 208 (395)
T ss_pred --------------CCEEEECEEEEECCCCHHHHHHCCCCCCCCCC--CEEEE-----EEECCCCCCCCCCEEEEEC---
T ss_conf --------------98998379999289962544531467656657--50799-----9840245676663178875---
Q ss_pred CCCCCCCEEEEECCCCEEEEEEEECCCCCCC--CCCHHHHHHHHHHCCCHHHHHCCCCEECCCCE-ECCCCCCCCCCCCC
Q ss_conf 6876641257664798059999832666566--88988999998608004565038826303513-40054212487423
Q gi|254781024|r 244 DMNTSGGGFVYHFDDNLVSIGFVLHLDYRNP--WISAYEELQRFKTHPDIRIIFTEGERLEYGAR-VISEGGWQSVPKLS 320 (554)
Q Consensus 244 ~~~~~gggwiy~~~d~~~~iG~v~~ld~~~~--~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~-~ip~gg~~s~pk~~ 320 (554)
. .|---+.|+++++.++-+....+.... ..+..+.++++... +.+.+ ++....+.+ ..|... ....+.+
T Consensus 209 ~---~Gp~allP~~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~--g~~~~~~~~~~~pl~~-~~a~~~~ 280 (395)
T PRK05732 209 E---HGPLALLPMSDGRCSLVWCHPLEDAEEVLSWSDAQFLAELQSA--FGWRL--GRITQAGKRSAYPLAL-VTAAEQI 280 (395)
T ss_pred C---CCCEEEEECCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHH--HCCCC--CCEEEECCCCCCHHHH-HHHHHHH
T ss_conf 9---9987987668997999994373437777439989999999997--45345--6437852322461777-7688874
Q ss_pred CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-C--CCHHHHHHHHHH
Q ss_conf 088799612323313664352268999999999999998745886-5--303678998642
Q gi|254781024|r 321 FPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKK-H--DDPIEIEDSWRQ 378 (554)
Q Consensus 321 ~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~-~--~~l~~Ye~~~~~ 378 (554)
.++++|+||||..+.|+.|-|.+.||....-.|+.+.+++..+.. . ..|..|+.+-+.
T Consensus 281 ~~Rv~LiGDAAH~~~P~aGQG~Nlgi~Da~~L~~~La~~~~~~~~~g~~~~L~~Y~~~R~~ 341 (395)
T PRK05732 281 SHRLVLVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTAAHERGEDIGDYAVLQRYQQRRQQ 341 (395)
T ss_pred CCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 1780675054426896305505268999999999999987449997739999999999899
No 25
>PRK06126 hypothetical protein; Provisional
Probab=99.94 E-value=3e-24 Score=187.44 Aligned_cols=329 Identities=17% Similarity=0.114 Sum_probs=180.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHH--CC--CHHHHCCCCCCCEEEEEE
Q ss_conf 64779998976899999999980899739999786778986402740333678886--78--726414885432243669
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSL--LP--RWREDKGHPFHTVVKRDL 89 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL--~P--d~~e~~g~pl~~~v~~d~ 89 (554)
|.||+||||||+|+++|..|++.| ++|+||||...+..+ --+..+.+++|+-| +. +-....+.|.+.+ .+.
T Consensus 7 ~~DVlIVGaGPvGL~lA~~La~~G--i~v~viEr~~~~~~~-~rA~~l~~rtlEil~~lGl~~~l~~~g~p~~~~--~~~ 81 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALELGRRG--VDSILVERGDGTAFN-PKANATSARSMEHFRRLGIADEVRSAGLPADYP--TDI 81 (545)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEECCCCCCCCC-CCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCC--CCE
T ss_conf 899899994989999999999879--999998899998878-858998889999999879889998507875346--633
Q ss_pred EEEECCCC----CEECCCCC---CC------CCCCCCCCEEEEHHHHHHHHHHHHHHC-CCEECCCCEEEEEEECCCCCE
Q ss_conf 99977997----67736543---56------544678826888889899999999874-953306822434776277620
Q gi|254781024|r 90 YWFLNAQR----SIQIPHFC---LP------DFMDNKEHYIVSLGQVCRWLKNKAEAL-GVEIYCGFTATEIYYGKKGEA 155 (554)
Q Consensus 90 ~~~l~~~~----~~~~p~~~---~p------~~~~~~g~yiv~r~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~e~g~v 155 (554)
.++..-++ .+.++... .+ ........+.+....+.+.|.+.+++. |++++.++.++++..++++..
T Consensus 82 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Q~~lE~~L~~~~~~~~gv~v~~g~~~~~~~qd~~gV~ 161 (545)
T PRK06126 82 AYFTRLTGYELARITLPSAREAITPVGGPDGSWPSPELPHRIPQKYVEPILLEHAQAQPGVTLRYGHRLTDFEQDADGVT 161 (545)
T ss_pred EEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCCEE
T ss_conf 68861176688862167544334565445665566563356288999999999997489988980778999998389469
Q ss_pred EEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC--CCCCCC
Q ss_conf 145412432443466578756302677425786066443255421122489988889899889888875165--667888
Q gi|254781024|r 156 LGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKP--QYHRRG 233 (554)
Q Consensus 156 vgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~--~~~~~G 233 (554)
+.++..+.| ...+++|+|+|+|||++|.|+++++..|.-.... +.+ +. ..+..+. ......
T Consensus 162 ~~~~~~~~g------------~~~~i~A~ylVGaDGarS~VR~~lGI~~~G~~~~--~~~-~~--~~~~~~~~~~~~~~~ 224 (545)
T PRK06126 162 ATVEDLDGG------------ESLTIRADYLVGCDGARSAVRKSLGISYEGTSGV--QRM-LS--IYIRAPGLYALVPHD 224 (545)
T ss_pred EEEEECCCC------------CEEEEEEEEEEECCCCCCHHHHHCCCCCCCCCCC--EEE-EE--EEEECCCHHHHCCCC
T ss_conf 999989999------------4899987799974788737788649887677631--158-99--999668546405788
Q ss_pred EEEEEECCCCCCCCCCCEEEEECCCC-EEEEEEEECCCCCCCCCCH---HHHHHHHHHCCCHHHHHCCCCEECCCCEECC
Q ss_conf 08995043476876641257664798-0599998326665668898---8999998608004565038826303513400
Q gi|254781024|r 234 LALHSIGWPLDMNTSGGGFVYHFDDN-LVSIGFVLHLDYRNPWISA---YEELQRFKTHPDIRIIFTEGERLEYGARVIS 309 (554)
Q Consensus 234 ~~~h~~g~~~~~~~~gggwiy~~~d~-~~~iG~v~~ld~~~~~~~~---~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip 309 (554)
...+++ .. .+.+.+++.+...+ +-.+-.....+.. ..... .+.+++....+. ..+.+... . ..
T Consensus 225 ~~~~~~--~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~------~~~i~~~~-~-w~ 291 (545)
T PRK06126 225 PAWMYW--LF--NPDRRGVLVAIDGRDEWLFHQLRPGEDE-FDIEDVDARAFVRRGLGEDI------PYEVLSVV-P-WV 291 (545)
T ss_pred CCEEEE--EE--CCCCCEEEEEECCCCEEEEEEECCCCCC-CCCCHHHHHHHHHHHHCCCC------CEEEEEEE-E-EE
T ss_conf 725999--97--7998679999559857999981588866-67870899999999629987------44899988-8-77
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 542124874230887996123233136643522689999999999999987458865303678998642
Q gi|254781024|r 310 EGGWQSVPKLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEIEDSWRQ 378 (554)
Q Consensus 310 ~gg~~s~pk~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~~Ye~~~~~ 378 (554)
... ....++..++++|+||||....|+-|-|++++|..+.=.|--++..+..--....|..|+..-+.
T Consensus 292 ~~~-~vA~~~r~gRVfLaGDAAH~~~P~gGqGmNtGi~DA~NLaWKLA~v~~G~a~~~LLdtY~~ERrp 359 (545)
T PRK06126 292 GRR-LVADSYRKGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLGWKLAAVLNGWAGPALLDSYEAERRP 359 (545)
T ss_pred EEE-EEHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHH
T ss_conf 668-88202257968970130012589766510222878998998898873687883550343223079
No 26
>PRK06184 hypothetical protein; Provisional
Probab=99.94 E-value=1.2e-23 Score=183.33 Aligned_cols=334 Identities=15% Similarity=0.092 Sum_probs=184.7
Q ss_pred HCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHH--CCCHHHH--CCCCCCCEEE
Q ss_conf 10364779998976899999999980899739999786778986402740333678886--7872641--4885432243
Q gi|254781024|r 11 DVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSL--LPRWRED--KGHPFHTVVK 86 (554)
Q Consensus 11 e~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL--~Pd~~e~--~g~pl~~~v~ 86 (554)
|+-.+||+||||||+|+++|..|++.| ++|+||||...+-.+ --+..+.+++++-| +--|.+. .+.+. .
T Consensus 3 ~~~tTDVlIVGaGPvGL~lA~~La~~G--i~v~viEr~~~~~~~-~RA~~l~~rt~eil~~lGl~d~i~~~~~~~----~ 75 (503)
T PRK06184 3 EYTTTDVLIVGAGPTGLTLAIELARRG--VSFRLIEKSPTPFRG-SRGKGIQPRTQEVFDDLGVLDRVVAAGGLY----P 75 (503)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCC-CCEEEECHHHHHHHHHCCCHHHHHHCCCCC----C
T ss_conf 888579899990999999999999779--989999489998868-858987899999999878978998435767----5
Q ss_pred EEEEEEECCCCCEECCCC--CCCC-CCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCC
Q ss_conf 669999779976773654--3565-4467882688888989999999987495330682243477627762014541243
Q gi|254781024|r 87 RDLYWFLNAQRSIQIPHF--CLPD-FMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEK 163 (554)
Q Consensus 87 ~d~~~~l~~~~~~~~p~~--~~p~-~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~ 163 (554)
...++ ............ ..+. ...-...+++....+.+.|.+++.+.|+++..++++.++..++++..+.+...+
T Consensus 76 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~le~~L~~~l~~~g~~v~~g~~v~~~~q~~~~V~v~~~~~~- 153 (503)
T PRK06184 76 PMRIY-RDDGSVVESDMMHHLKPTPDEPYHLPLMVPQWRTEEILRERLAELGHRVEFGCELVGFEQDPEGVTARVAGPA- 153 (503)
T ss_pred CEEEE-ECCCEEEEEECCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEEECCC-
T ss_conf 24999-6897056510243346666765352577227999999999998679869947668899981998999998599-
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 24434665787563026774257860664432554211224899888898998898888751656678880899504347
Q gi|254781024|r 164 GKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPL 243 (554)
Q Consensus 164 G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~ 243 (554)
...+++|+|+|+|||++|.|+++++..+.-... ..+.+. +..+......+ ..+|.+. .
T Consensus 154 -------------~~~~i~a~ylVGaDGa~S~VR~~lgI~~~g~~~-~~~~~v-----v~d~~~~~~~~-~~~~~~~--~ 211 (503)
T PRK06184 154 -------------GEETVRARYLVGADGGRSFVRKALGIGFPGETL-GIDRAL-----VADVSLSGLDR-DAWHIFP--D 211 (503)
T ss_pred -------------CCEEEEEEEEECCCCCCHHHHHHCCCCCCCCCC-CCCEEE-----EEEEECCCCCC-CEEEEEE--C
T ss_conf -------------718999877741577774668863998755555-664499-----99888457898-7269974--4
Q ss_pred CCCCCCCEEEEECCCCE-EEEEEEECCCCCCCCCCHHHHHHHH-HHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCC
Q ss_conf 68766412576647980-5999983266656688988999998-608004565038826303513400542124874230
Q gi|254781024|r 244 DMNTSGGGFVYHFDDNL-VSIGFVLHLDYRNPWISAYEELQRF-KTHPDIRIIFTEGERLEYGARVISEGGWQSVPKLSF 321 (554)
Q Consensus 244 ~~~~~gggwiy~~~d~~-~~iG~v~~ld~~~~~~~~~~~lq~f-k~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~ 321 (554)
. ...+...+.|..++. ..+-.....+ ..+..+. +.+++. ....... .+ .-..+.+ ....+... ....++..
T Consensus 212 ~-~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~-~~-~~~~i~~-~s~~~~~~-rvA~~~~~ 284 (503)
T PRK06184 212 G-DGARMIALCPLAGTDLFQIQAPLPPG-GEPDLSA-DGLTALLAERTGRT-DI-RLHSVTW-LSAFRMNA-RLADRYRV 284 (503)
T ss_pred C-CCCCEEEEEECCCCCEEEEEEECCCC-CCCCCCH-HHHHHHHHHHHCCC-CC-CEEEEEE-EEECCCCE-EEHHHHCC
T ss_conf 8-99847999975899489999987898-6668998-99999999975899-86-3678757-89711003-67034337
Q ss_pred CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8879961232331366435226899999999999999874588653036789986420466788
Q gi|254781024|r 322 PGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEIEDSWRQTQIGKDL 385 (554)
Q Consensus 322 ~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~~Ye~~~~~s~~~~el 385 (554)
++++|+||||..+.|+-|.|++.+|..+.=.|--++..+.. -....|..|+..-+. +.+++
T Consensus 285 gRvfLaGDAAH~~~P~gGqGmN~Gi~DA~NLaWKLa~vl~G-a~~~LLdtY~~ERrp--va~~~ 345 (503)
T PRK06184 285 GRVFLAGDAAHVHPPAGGQGLNTSIQDAYNLGWKLAAVLAG-APEALLDSYEEERRP--VAAAV 345 (503)
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-CCHHHCCCCHHHHHH--HHHHH
T ss_conf 96798335012059965663333155678899999999729-992551502888899--99999
No 27
>PRK08013 hypothetical protein; Provisional
Probab=99.94 E-value=4.4e-23 Score=179.34 Aligned_cols=340 Identities=17% Similarity=0.136 Sum_probs=185.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC----CCCC-CCCCEECHHHHHHH--CCCHHHH---CCCCCCC
Q ss_conf 64779998976899999999980899739999786778----9864-02740333678886--7872641---4885432
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEV----GAHI-LSGAIIDPIGIDSL--LPRWRED---KGHPFHT 83 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~p----G~~i-~sG~vl~p~aL~eL--~Pd~~e~---~g~pl~~ 83 (554)
.|||+||||||+|+++|+.|++.| ++|+||||.... +.+. +-.-.+.+..++-| +--|.+. ...|+
T Consensus 3 ~~DV~IvGaGpvGl~lA~~La~~G--~~v~viE~~~~~~~~~~~~~~~R~~al~~~s~~~L~~lGl~~~i~~~~~~~~-- 78 (400)
T PRK08013 3 SVDVAIVGGGMVGLAVACGLQGSG--LRVAVLEHRVPEPLAADAPPQLRVSAINAASEKLLTRLGVWQDILARRASCY-- 78 (400)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCC--
T ss_conf 678899993599999999997189--9589991899876778888770444008999999998798076686067761--
Q ss_pred EEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHC-CCEECCCCEEEEEEECCCCCEEEEEECC
Q ss_conf 243669999779976773654356544678826888889899999999874-9533068224347762776201454124
Q gi|254781024|r 84 VVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEAL-GVEIYCGFTATEIYYGKKGEALGILTGE 162 (554)
Q Consensus 84 ~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~e~g~vvgv~t~~ 162 (554)
..-.++-....+.+.+... +.. ..+-+|++....+.+.|.+++++. +++++.++.+.++..+++...+ ...
T Consensus 79 --~~~~v~~~~~~g~~~~~~~--~~~-~~~lg~ii~~~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~~~v--~l~- 150 (400)
T PRK08013 79 --HGMEVWDKDSFGHISFDDQ--SMG-YSHLGHIVENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFL--TLK- 150 (400)
T ss_pred --EEEEEECCCCCCEEECCCC--CCC-CCCCEEEECCHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCEEEE--EEC-
T ss_conf --1579863787752432620--138-75230430208899999999986898299868668998716971599--947-
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 32443466578756302677425786066443255421122489988889899889888875165667888089950434
Q gi|254781024|r 163 KGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWP 242 (554)
Q Consensus 163 ~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~ 242 (554)
.+..++|+++|+|||++|.+++.++-.+..... .|+.- +..+..+....+.....+
T Consensus 151 --------------~g~~i~a~lvVgADG~~S~vR~~~gi~~~~~~y--~q~~l-----v~~v~~~~~~~~~a~q~f--- 206 (400)
T PRK08013 151 --------------DGSMLTARLVIGADGANSWLRNKADIPLTFWDY--QHHAL-----VATIRTEEPHDAVARQVF--- 206 (400)
T ss_pred --------------CCCEEEEEEEEECCCCCCHHHHHCCCCCCCCCC--CCEEE-----EEEECCCCCCCCCCEEEE---
T ss_conf --------------998997428999788761323313888723377--85399-----984125676656416764---
Q ss_pred CCCCCCCCEEEEECCC-CEEEEEEEECCCCCCC--CCCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCC
Q ss_conf 7687664125766479-8059999832666566--889889999986080045650388263035134005421248742
Q gi|254781024|r 243 LDMNTSGGGFVYHFDD-NLVSIGFVLHLDYRNP--WISAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKL 319 (554)
Q Consensus 243 ~~~~~~gggwiy~~~d-~~~~iG~v~~ld~~~~--~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~ 319 (554)
... |---+.|+.+ +..++-+.+..+..+. ..+. +.|.+.... .+...+...+... .....|.... -.+++
T Consensus 207 --~~~-G~la~LPl~~~~~~~~vw~~~~~~~~~~~~~~~-~~~~~~l~~-~~~~~lg~~~~~~-~~~~~pl~~~-~a~~~ 279 (400)
T PRK08013 207 --HGE-GILAFLPLSDPHLCSIVWSLSPEEAQRMQQAPE-EEFNRALNI-AFDNRLGLCKLES-ERQVFPLTGR-YARQF 279 (400)
T ss_pred --CCC-CCEEEEECCCCCEEEEEEECCHHHHHHHHHCCH-HHHHHHHHH-HHHHCCCCEEEEE-CCEEEEHHHE-EEHHH
T ss_conf --499-757999779998799999558789999985359-999999987-6200056408974-2347434450-10233
Q ss_pred CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3088799612323313664352268999999999999998745886-53--03678998642046678887422566887
Q gi|254781024|r 320 SFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKK-HD--DPIEIEDSWRQTQIGKDLWIIRNIKPLLS 396 (554)
Q Consensus 320 ~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~-~~--~l~~Ye~~~~~s~~~~el~~~rn~~~~~~ 396 (554)
+.++++|+||||..+.|+-|-|++.+|..+...|+.+.++...+.- .+ .|.+|+++-+. ....-+.-...+...|+
T Consensus 280 ~~~rv~LiGDAAH~~hP~aGQGlNlgi~Da~~L~~~L~~~~~~~~d~g~~~~L~~Ye~~R~~-~~~~~~~~t~~l~~~f~ 358 (400)
T PRK08013 280 AAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRKH-SAALMLAGMQGFRDLFA 358 (400)
T ss_pred CCCCEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHC
T ss_conf 27755773225541796212636267999999999999998548897768999999999899-99999999999999987
Q ss_pred H
Q ss_conf 6
Q gi|254781024|r 397 R 397 (554)
Q Consensus 397 ~ 397 (554)
.
T Consensus 359 ~ 359 (400)
T PRK08013 359 G 359 (400)
T ss_pred C
T ss_conf 9
No 28
>PRK08244 hypothetical protein; Provisional
Probab=99.94 E-value=1.3e-24 Score=189.92 Aligned_cols=325 Identities=17% Similarity=0.143 Sum_probs=182.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHH--CCCHHHH--CCCCCCCEEEEE
Q ss_conf 364779998976899999999980899739999786778986402740333678886--7872641--488543224366
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSL--LPRWRED--KGHPFHTVVKRD 88 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL--~Pd~~e~--~g~pl~~~v~~d 88 (554)
|++||+||||||+|+++|..|++.| ++|+||||...+-.+ --+..+.+++++-| +--+.+. .+.+ +..-
T Consensus 1 m~tDVlIVGaGPvGL~lAl~La~~G--v~v~vvEr~~~~~~~-~RA~~l~~rt~eil~~~Gl~~~l~~~g~~----~~~~ 73 (494)
T PRK08244 1 MKTDVIIIGGGPVGLMLASELALAG--VRTCVIERLKEPVPY-SKALTLHPRTLELLEMRGLLERFLEKGRK----LPSG 73 (494)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCC-CCEEECCHHHHHHHHHCCCHHHHHHHCEE----CCCC
T ss_conf 9989999994789999999999779--999999089998889-98746089999999987898898852107----6563
Q ss_pred EEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCC
Q ss_conf 99997799767736543565446788268888898999999998749533068224347762776201454124324434
Q gi|254781024|r 89 LYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYD 168 (554)
Q Consensus 89 ~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~ 168 (554)
.+. .....+.+..... .....+.+....+.+.|.++|++.|++++.++++.++..++++..+.++..+ |
T Consensus 74 ~~~--~~~~~~~~~~~~~----~~~~~~~~~Q~~le~iL~~~a~~~g~~v~~g~e~~~~~~~~d~V~~~~~~~~-g---- 142 (494)
T PRK08244 74 HFA--GLDTRLDFSALDT----RANYTLFLPQAETEKILEEHARSLGVEILRGHEALAVRQDGDGVEVVVRGPD-G---- 142 (494)
T ss_pred EEE--CCCCCEECCCCCC----CCCCEEEECHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEEEECC-C----
T ss_conf 681--4433032033577----8882698155999999999998479889968689999986997899999089-7----
Q ss_pred CCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 66578756302677425786066443255421122489988889899889888875165667888089950434768766
Q gi|254781024|r 169 GTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMNTS 248 (554)
Q Consensus 169 ~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~~~ 248 (554)
..+++|+|+|+|||++|.|+++++-.+.-... .+.+. +..+......+...... . ...
T Consensus 143 ---------~~~i~a~ylVGaDGa~S~VR~~lgI~~~g~~~--~~~~~-----~~d~~~~~~~~~~~~~~---~---~~~ 200 (494)
T PRK08244 143 ---------LRTLTSLYAVGADGAGSTVRKQAGIAFSGTDA--TLTAM-----LGDVALEDPPPSSFYSC---C---TRE 200 (494)
T ss_pred ---------CEEEEEEEEEEECCCCCHHHHHCCCCCCCCCC--EEEEE-----EEEEEECCCCCCEEEEE---E---CCC
T ss_conf ---------68998779998246672679875998546411--37999-----99999637998769998---5---599
Q ss_pred CCEEEEECCCCEEEEEEEECCCCCCCCCCH--HHHHHH-HHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCCCEE
Q ss_conf 412576647980599998326665668898--899999-86080045650388263035134005421248742308879
Q gi|254781024|r 249 GGGFVYHFDDNLVSIGFVLHLDYRNPWISA--YEELQR-FKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKLSFPGGS 325 (554)
Q Consensus 249 gggwiy~~~d~~~~iG~v~~ld~~~~~~~~--~~~lq~-fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~g~l 325 (554)
|...+.|+.++...+-+........+...+ .+.+++ +.... ...+.-.+... -.. .+... +...++..++++
T Consensus 201 g~~~~~P~~~~~~r~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~--g~~~~~~~~~~-~s~-~~~~~-r~A~~~r~gRVf 275 (494)
T PRK08244 201 GGVVIVPLDGGIFRVLIIDPHRPQAPKDEPVTLEELKKSLSRIC--GTDFGLNDPVW-MSR-FGNAT-RQAERYRSGRIF 275 (494)
T ss_pred CEEEEEECCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH--CCCCCCCCEEE-EEE-CCCCC-EEECCCCCCCEE
T ss_conf 70999980899799999827655654447889899999999863--88776033248-986-15300-450324479689
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 96123233136643522689999999999999987458865303678998642046678
Q gi|254781024|r 326 LIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEIEDSWRQTQIGKD 384 (554)
Q Consensus 326 LvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~~Ye~~~~~s~~~~e 384 (554)
|+||||..+.|+-|-|++++|..+.=.|--++..++..-....|..|+..-+. +.+.
T Consensus 276 LaGDAAH~~~P~gGqGmNtGi~DA~NLaWKLA~vl~G~a~~~LLdTY~~ERrp--va~~ 332 (494)
T PRK08244 276 LAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGWAPPWLLDSYHHERHP--VGKA 332 (494)
T ss_pred EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHCHH--HHHH
T ss_conf 96040100388766651343032454899999997688980232362554412--8999
No 29
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.94 E-value=1.6e-23 Score=182.45 Aligned_cols=324 Identities=14% Similarity=0.078 Sum_probs=179.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC-------CEECHHHHHHH--CCCHHHHCCCCCCC
Q ss_conf 3647799989768999999999808997399997867789864027-------40333678886--78726414885432
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSG-------AIIDPIGIDSL--LPRWREDKGHPFHT 83 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG-------~vl~p~aL~eL--~Pd~~e~~g~pl~~ 83 (554)
|++||+||||||+|+++|..|++.| ++|+|||+.+..-...-.. -.+.+.+++-| +-=|.... .....
T Consensus 1 m~~DV~IvGaGpvGl~lAl~L~~~G--~~v~lie~~~~~~~~~~~~~~~~~R~~al~~~s~~~L~~lG~~~~l~-~~~~~ 77 (405)
T PRK05714 1 MRADLLIVGAGMVGSALALALEGSG--LEVLLVDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIA-ARRAS 77 (405)
T ss_pred CCCCEEEECCCHHHHHHHHHHHCCC--CCEEEEECCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHH-HHCCC
T ss_conf 9988999990599999999996189--97899958997778776677898425567799899999879816568-73577
Q ss_pred EEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCC
Q ss_conf 24366999977997677365435654467882688888989999999987495330682243477627762014541243
Q gi|254781024|r 84 VVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEK 163 (554)
Q Consensus 84 ~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~ 163 (554)
++..-.++--+....+.+... ......-+|++....+.+.|.++..+.+++++.+.++.++..+.++..+.. .
T Consensus 78 p~~~~~v~d~~~~~~~~f~~~---~~~~~~lg~vv~~~~l~~~L~~~l~~~~v~~~~~~~v~~~~~~~~~~~v~l--~-- 150 (405)
T PRK05714 78 PYSDMQVWDGSGTGQIHFSAA---SVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTL--A-- 150 (405)
T ss_pred CEEEEEEECCCCCCEEEECCC---CCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCEEEEEE--C--
T ss_conf 612455205898622764410---147644411232699999999999727988984878999998388079996--7--
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 24434665787563026774257860664432554211224899888898998898888751656678880899504347
Q gi|254781024|r 164 GKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPL 243 (554)
Q Consensus 164 G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~ 243 (554)
.+.+++|+++|+|||++|.+++.++..+.- ..-.|+.. +..+..+....+..+..| .
T Consensus 151 -------------~g~~i~a~llVgADG~~S~vR~~~gi~~~~--~~y~q~al-----v~~v~~~~~~~~~a~q~F---~ 207 (405)
T PRK05714 151 -------------DGRQLRAPLVVAADGANSAVRRLAGCATRE--WDYLHHAI-----VTSVRCSAPHRATAWQRF---T 207 (405)
T ss_pred -------------CCCEEECCEEEECCCCCCHHHHHCCCCCCC--CCCCCEEE-----EEEECCCCCCCCEEEEEE---C
T ss_conf -------------997986388999589985666513567502--35564489-----984113787662579997---6
Q ss_pred CCCCCCCEEEEECCCCE--EEEEEEECCCC--CCC--CCCHHHHHHHHHHCCCHHHHHCCCCEECCCCE-ECCCCCCCCC
Q ss_conf 68766412576647980--59999832666--566--88988999998608004565038826303513-4005421248
Q gi|254781024|r 244 DMNTSGGGFVYHFDDNL--VSIGFVLHLDY--RNP--WISAYEELQRFKTHPDIRIIFTEGERLEYGAR-VISEGGWQSV 316 (554)
Q Consensus 244 ~~~~~gggwiy~~~d~~--~~iG~v~~ld~--~~~--~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~-~ip~gg~~s~ 316 (554)
.. |---++|+.++. ....+|..... .+. ..+.....+.+... +...+ ++......+ ..|.... -.
T Consensus 208 ~~---Gpla~lPl~~~~~~~~~s~vws~~~~~a~~~~~~~~~~~~~~l~~~--~~~~l--g~i~~~~~~~~~pl~~~-~a 279 (405)
T PRK05714 208 DD---GPLAFLPLERDGDEHWCSIVWSTTPEEAERLMALDDDAFCAALERA--FEGRL--GEVLSADPRLCVPLRQR-HA 279 (405)
T ss_pred CC---CCEEEEECCCCCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHH--HHCCC--CCEEEECCCEEEEHHHH-HH
T ss_conf 99---9759997457997667999970888999987639999999999987--51113--64488348667436266-76
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCC--CHHHHHHHHH
Q ss_conf 742308879961232331366435226899999999999999874588-653--0367899864
Q gi|254781024|r 317 PKLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGK-KHD--DPIEIEDSWR 377 (554)
Q Consensus 317 pk~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~-~~~--~l~~Ye~~~~ 377 (554)
++.+.++++|+||||..++|+-|-|.+.+|......|+.+.++...|. ..+ .|.+|+++-+
T Consensus 280 ~~~~~~rv~LiGDAAH~~hP~aGQGlNlGl~Da~~La~~L~~a~~~g~~~g~~~~L~~Y~~~R~ 343 (405)
T PRK05714 280 KRYVEEGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRM 343 (405)
T ss_pred HHHHCCCCEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 7864267324320553589730340405599999999999999862999666999999999989
No 30
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.94 E-value=8.2e-24 Score=184.40 Aligned_cols=320 Identities=16% Similarity=0.105 Sum_probs=185.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC-----CCCCEECHHHHHHH--CCCHH---HHCCCCCCC
Q ss_conf 647799989768999999999808997399997867789864-----02740333678886--78726---414885432
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI-----LSGAIIDPIGIDSL--LPRWR---EDKGHPFHT 83 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i-----~sG~vl~p~aL~eL--~Pd~~---e~~g~pl~~ 83 (554)
++||+||||||+|+++|..|++.| ++|+||||...+.... .-.-.+.+.+++-| +-=|. +....|+..
T Consensus 5 ~~DV~IvG~G~vGl~lAl~La~~G--~~V~viE~~~~~~~~~~~~~d~R~~al~~~s~~~L~~lGvw~~~~~~~~~~~~~ 82 (391)
T PRK08020 5 PTEIAIVGGGMVGGALALGLAQHG--FSVAVIEHAAPAPFVADSQPDVRISAISAASVALLKGLGVWDAVQAMRCHPYRR 82 (391)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCEEE
T ss_conf 984899993699999999998669--978999489987666557987338987889999999888848778625687148
Q ss_pred EEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH-CCCEECCCCEEEEEEECCCCCEEEEEECC
Q ss_conf 24366999977997677365435654467882688888989999999987-49533068224347762776201454124
Q gi|254781024|r 84 VVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEA-LGVEIYCGFTATEIYYGKKGEALGILTGE 162 (554)
Q Consensus 84 ~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~-~Gvei~~g~~v~~i~~~e~g~vvgv~t~~ 162 (554)
-.++- .....+.+..... -...-+|+|....+.+.|.+.+++ .+++++.+.+++.+..++++..+...
T Consensus 83 ----~~~~~-~~~~~~~f~~~~~---~~~~lg~~v~~~~l~~~L~~~l~~~~~v~~~~~~~v~~i~~~~~~~~v~l~--- 151 (391)
T PRK08020 83 ----LETWE-WETAHVVFDAAEL---KLPELGYMVENRVLQQALWQALEAHPNVTLRVPASLIALHRHDDGWELELA--- 151 (391)
T ss_pred ----EEEEC-CCCCEEEECHHHC---CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCEEEEEEC---
T ss_conf ----98612-7885587254432---897540121269999999999983899699958802688974986899948---
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 32443466578756302677425786066443255421122489988889899889888875165667888089950434
Q gi|254781024|r 163 KGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWP 242 (554)
Q Consensus 163 ~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~ 242 (554)
.+.+++|++||+|||.+|.+++.++-.+.-... .|.. + +..+..+....+..+..+
T Consensus 152 --------------~g~~i~a~lvIgADG~~S~vR~~~gi~~~~~~y--~q~a-l----v~~v~~~~~~~~~a~q~f--- 207 (391)
T PRK08020 152 --------------DGETIQAKLVIGADGANSQVRQMAGIGVHAWQY--AQSC-M----LITVECENDPGDSTWQQF--- 207 (391)
T ss_pred --------------CCCEEEECEEEEECCCCCHHHHHCCCCCCCCCC--CCEE-E----EEEECCCCCCCCCEEEEE---
T ss_conf --------------999998379999079970544522788635787--6248-9----998614677776328998---
Q ss_pred CCCCCCCCEEEEECCCCEEEEEEEECCCCCC--CCCCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCC
Q ss_conf 7687664125766479805999983266656--68898899999860800456503882630351340054212487423
Q gi|254781024|r 243 LDMNTSGGGFVYHFDDNLVSIGFVLHLDYRN--PWISAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKLS 320 (554)
Q Consensus 243 ~~~~~~gggwiy~~~d~~~~iG~v~~ld~~~--~~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~ 320 (554)
.+ .|---+.|+.++..++-+....+... ...+..+..+++..+- ...+ ++....+....|..... ..+.+
T Consensus 208 ~~---~Gp~alLPl~~~~~slVw~~~~~~~~~l~~~~~~~~~~~l~~~~--~~~l--g~i~~~~~~~fpl~~~~-a~~~~ 279 (391)
T PRK08020 208 TP---DGPRAFLPLFDNWASLVWYDSPARIRQLQAMSMAQLQAEIAAHF--PSRL--GAVTPLAAGAFPLTRRH-ALQYV 279 (391)
T ss_pred CC---CCCEEEEECCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHHH--HHHC--CEEEEEEEEECHHHHHH-HHHHH
T ss_conf 08---99778862589868999947877788765199999999999873--1332--60579753020476533-43640
Q ss_pred CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-C--CCHHHHHHHHHH
Q ss_conf 088799612323313664352268999999999999998745886-5--303678998642
Q gi|254781024|r 321 FPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKK-H--DDPIEIEDSWRQ 378 (554)
Q Consensus 321 ~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~-~--~~l~~Ye~~~~~ 378 (554)
.++++|+||||..++|+-|-|++.+|......|+.+.++...|.. . ..|.+|+++-+.
T Consensus 280 ~~rvvLiGDAAH~ihP~aGQGlNlGl~Da~~La~~L~~~~~~~~~~g~~~~L~~Y~~~R~~ 340 (391)
T PRK08020 280 QPGLALVGDAAHTIHPLAGQGVNLGYRDVDALIDVLVNARSYGEAWASYPVLKRYQRRRMA 340 (391)
T ss_pred CCCEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 5988886142314895423414256999999999999998608996609999999999899
No 31
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.94 E-value=5.8e-24 Score=185.41 Aligned_cols=321 Identities=15% Similarity=0.124 Sum_probs=180.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHH--CCCHHHH--CCCCCCCEEEEEE
Q ss_conf 64779998976899999999980899739999786778986402740333678886--7872641--4885432243669
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSL--LPRWRED--KGHPFHTVVKRDL 89 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL--~Pd~~e~--~g~pl~~~v~~d~ 89 (554)
+|||+||||||+|+++|..|++.| ++|+||||.....+ . -...+.+.+++-| +-=|.+. .+.|+. .
T Consensus 5 ~~DV~IvGaGp~Gl~lAl~La~~G--~~v~lie~~~~~~d-~-Ra~al~~~s~~~L~~lGl~~~l~~~~~~~~----~-- 74 (386)
T PRK07494 5 HTDIAVSGGGPAGLAAAIALASAG--ASVALVAPAPPYAD-L-RTTALLGPSIRFLERLGVWARLAPHAAPLQ----S-- 74 (386)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCC-C-CEEEECHHHHHHHHHCCCHHHHHHHCCCCE----E--
T ss_conf 886899990689999999998789--98899957998888-8-679986899999998898788875148522----6--
Q ss_pred EEEECCCCC-EECCCC--CCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCC
Q ss_conf 999779976-773654--35654467882688888989999999987495330682243477627762014541243244
Q gi|254781024|r 90 YWFLNAQRS-IQIPHF--CLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKN 166 (554)
Q Consensus 90 ~~~l~~~~~-~~~p~~--~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~ 166 (554)
+.+.+..+. +..+.. .....-...-+|+|.+..+.+.|.+++++.+..++.+..+..+..++++ +.+.+.+
T Consensus 75 ~~~~d~~~~~~~~~~~~f~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--v~v~~~d---- 148 (386)
T PRK07494 75 MRIVDATGRLIRAPEVRFRASEIGEDAFGYNIPNWLLNRALEARAAELPNIDRFDDEAESVRPRGDE--VTVTLAD---- 148 (386)
T ss_pred EEEEECCCCCCCCCCCCCCHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCE--EEEEECC----
T ss_conf 9999689851137641035322477663210126999999999997189979977706899966984--8999789----
Q ss_pred CCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf 34665787563026774257860664432554211224899888898998898888751656678880899504347687
Q gi|254781024|r 167 YDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMN 246 (554)
Q Consensus 167 k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~ 246 (554)
|.+++|+++|+|||++|.++++++..+.-. .-+|.+. ++.+..+....+.....+ .
T Consensus 149 -----------g~~i~a~llIgADG~~S~vR~~~gi~~~~~--~y~q~~~-----v~~v~~~~p~~~~a~~~~---~--- 204 (386)
T PRK07494 149 -----------GTTLSARLVVAADGRNSPAREAAGIGVRTW--SYPQKAL-----VFNFTHSRPHENVSTEFH---T--- 204 (386)
T ss_pred -----------CCEEEEEEEEEECCCCCCCCCCCCCCCCCC--CCEEEEE-----EEEECCCCCCCCEEEEEE---C---
T ss_conf -----------969998699990588874312257564446--5301279-----985313566663237996---5---
Q ss_pred CCCCEEEEECCCCEEEEEEEECCCCCCC--CCCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCCCE
Q ss_conf 6641257664798059999832666566--88988999998608004565038826303513400542124874230887
Q gi|254781024|r 247 TSGGGFVYHFDDNLVSIGFVLHLDYRNP--WISAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKLSFPGG 324 (554)
Q Consensus 247 ~~gggwiy~~~d~~~~iG~v~~ld~~~~--~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~g~ 324 (554)
..|--.++|++++..++-++...+.... ..+.....+.+... +...+ +.-...-.-...|.... ..+++..+++
T Consensus 205 ~~Gp~a~lPl~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~l-g~~~~~~~~~~~pl~~~-~a~~~~~~Rv 280 (386)
T PRK07494 205 EHGPFTQVPLPGRRSSLVWVVRPAEAERLLALSDAALSAAIEER--SQSML-GKLTLEPGRQLWPLSGL-VPHRFAANRT 280 (386)
T ss_pred CCCCEEEEECCCCCEEEEEEECCHHHHHHHHCCHHHHHHHHHHH--HHHHC-CCEEECCCEEEEEHHHH-HHHHHHCCCE
T ss_conf 99858999869995699999361458987633879999999998--66415-75375155156024641-1566516882
Q ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 996123233136643522689999999999999987458865303678998642
Q gi|254781024|r 325 SLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEIEDSWRQ 378 (554)
Q Consensus 325 lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~~Ye~~~~~ 378 (554)
+|+||||..+.|+-|-|.+.+|......|+.+.++...-.....|..|+.+-+.
T Consensus 281 ~LiGDAAH~~~P~aGQG~Nlgi~Da~~La~~L~~~~~~~~~~~~L~~Y~~~Rr~ 334 (386)
T PRK07494 281 ALVGEAAHVFPPIGAQGLNLGLRDVADLVEIVEDRGEDPGSAAVLAAYDRARRP 334 (386)
T ss_pred EEEECHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 786122223795220057666999999999998644586749999999999989
No 32
>PRK07538 hypothetical protein; Provisional
Probab=99.94 E-value=7.1e-24 Score=184.83 Aligned_cols=322 Identities=17% Similarity=0.192 Sum_probs=184.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHH----CCCHHHHCCCCCCCEEEEEEEE
Q ss_conf 779998976899999999980899739999786778986402740333678886----7872641488543224366999
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSL----LPRWREDKGHPFHTVVKRDLYW 91 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL----~Pd~~e~~g~pl~~~v~~d~~~ 91 (554)
||+||||||+||++|+.|++.| ++|.|+|+..+++.- -.|-.|.|.+++.| +-+-....+.+ ...+.
T Consensus 2 ~V~IvGaG~aGL~lA~~L~~~G--i~v~V~E~~~~~~~~-G~gI~l~p~a~~~L~~lGl~~~l~~~g~~------~~~~~ 72 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRG--IEVEVFEAAPELRPL-GVGINLLPHAVRELAELGLLEALDAVGIR------TRELV 72 (413)
T ss_pred EEEEECCCHHHHHHHHHHHHCC--CCEEEECCCCCCCCC-CEEEEECHHHHHHHHHCCCHHHHHHHCCC------CCEEE
T ss_conf 8999990589999999999789--998999369988878-52875187999999987897899862777------63279
Q ss_pred EECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHH-HCCC-EECCCCEEEEEEECCCCCEEEEEECCCCCCCCC
Q ss_conf 97799767736543565446788268888898999999998-7495-330682243477627762014541243244346
Q gi|254781024|r 92 FLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAE-ALGV-EIYCGFTATEIYYGKKGEALGILTGEKGKNYDG 169 (554)
Q Consensus 92 ~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae-~~Gv-ei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~ 169 (554)
+.+..+..-+........-.+...|.+.|..|-+.|.+.+. ..|. .|+++.+++.+..++++.++.......+
T Consensus 73 ~~~~~G~~i~~~~~g~~~g~~~p~~~i~R~~L~~~L~~~~~e~lg~~~i~~g~~v~~~~~~~~~v~~~~~~~~~~----- 147 (413)
T PRK07538 73 FFNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDAGVTVVFLGDRAGG----- 147 (413)
T ss_pred EECCCCCEEEECCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCCEEEEEECCCCC-----
T ss_conf 996999898733466445788852565099999999999997569968996778989887499529999715788-----
Q ss_pred CCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC--CCCCCCCEEEEEECCCCCCCC
Q ss_conf 657875630267742578606644325542112248998888989988988887516--566788808995043476876
Q gi|254781024|r 170 TQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIK--PQYHRRGLALHSIGWPLDMNT 247 (554)
Q Consensus 170 ~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~--~~~~~~G~~~h~~g~~~~~~~ 247 (554)
.+.+++|++||+|||.+|.+++++.... ..+ .|. |+ -+|... ......+......+. .
T Consensus 148 -------~~~~~~adllVGADGi~S~VR~~l~p~~-----~~~-~~~-g~-~~wrg~~~~~~~~~~~~~~~~~~-----~ 207 (413)
T PRK07538 148 -------DLVSVRADVLIGADGIHSAVRAQLYPDE-----GPP-RWN-GV-LMWRGVTRAPPFLTGASMVRAGH-----L 207 (413)
T ss_pred -------CCEEEEECEEEECCCCCCHHHHHHCCCC-----CCC-EEE-EE-EEEEEEEECCCCCCCCEEEEEEC-----C
T ss_conf -------7239984889988898752457744889-----995-350-06-99999851676678862899817-----9
Q ss_pred CCCEEEEECCCC-----EEEEEEEEC--CCC--------CCCCCCHHHHHHHHHHC----CCHHHHHCCCCEECCCCEEC
Q ss_conf 641257664798-----059999832--666--------56688988999998608----00456503882630351340
Q gi|254781024|r 248 SGGGFVYHFDDN-----LVSIGFVLH--LDY--------RNPWISAYEELQRFKTH----PDIRIIFTEGERLEYGARVI 308 (554)
Q Consensus 248 ~gggwiy~~~d~-----~~~iG~v~~--ld~--------~~~~~~~~~~lq~fk~h----p~i~~~l~gg~~~~yga~~i 308 (554)
.+.-.+||..+. ...+.++.. .+. .+...+..+.+..|... ..+..++...... ...
T Consensus 208 ~~~~v~yPi~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~li~~~~~~----~~~ 283 (413)
T PRK07538 208 TGKLVVYPISEPVDADGLQLINWVAEVRVPDTEAPRREDWNRPGRLEDFLPHFAGWRFDWLDVPALIRGAEAI----YEY 283 (413)
T ss_pred CCEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCCE----EEC
T ss_conf 9439999636887777625899999961687666552113466689999998546787613099998448624----541
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 0542124874230887996123233136643522689999999999999987458865303678998642
Q gi|254781024|r 309 SEGGWQSVPKLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEIEDSWRQ 378 (554)
Q Consensus 309 p~gg~~s~pk~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~~Ye~~~~~ 378 (554)
|......+|+.+.++++|+||||.-+.|..|.|.+.||..+...|+.+.+ .++..+.|..||+..+.
T Consensus 284 pl~dr~pl~~w~~GRV~LiGDAAH~m~P~~GqGan~AieDA~~La~~La~---~~~~~~aL~aYe~~Rrp 350 (413)
T PRK07538 284 PMVDRDPLPRWTRGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAA---HGDPEAALAAYEAERRP 350 (413)
T ss_pred CEEECCCCCCCCCCCEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHCH
T ss_conf 12305667740228999988653158756201787999999999999861---89989999999998787
No 33
>PRK06753 hypothetical protein; Provisional
Probab=99.94 E-value=2.9e-23 Score=180.54 Aligned_cols=327 Identities=14% Similarity=0.086 Sum_probs=191.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHH--CCCHHHH--CCCCCCCEEEEEEEEE
Q ss_conf 79998976899999999980899739999786778986402740333678886--7872641--4885432243669999
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSL--LPRWRED--KGHPFHTVVKRDLYWF 92 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL--~Pd~~e~--~g~pl~~~v~~d~~~~ 92 (554)
|+||||||||+++|+.|+|.| ++|.|+||...++. .-.|-.+.|.+++.| +.-+.+. .+.+ .+.+.+
T Consensus 3 V~IVGaGiaGL~~A~~L~~~G--~~v~V~Er~~~~~~-~g~gi~l~~~~l~~L~~~gl~~~l~~~~~~------~~~~~~ 73 (373)
T PRK06753 3 IAIIGAGIGGLTAAALLQEQG--HTVKVFEKNESVTE-IGAGIGIGDNVLKKLGNHDLAKGIKNAGQI------LSTMNV 73 (373)
T ss_pred EEEECCCHHHHHHHHHHHHCC--CCEEEECCCCCCCC-CCEEEEECHHHHHHHHHCCCHHHHHHHCCC------CCEEEE
T ss_conf 999994589999999999779--99999888999887-761999889999999987984899960778------732999
Q ss_pred ECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 77997677365435654467882688888989999999987495330682243477627762014541243244346657
Q gi|254781024|r 93 LNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQG 172 (554)
Q Consensus 93 l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~ 172 (554)
.+..+.. +..... ..+...+.+.|..+.+.|.+.+.+. .|..+..++++..++++ +.+...
T Consensus 74 ~~~~g~~-~~~~~~---~~~~~~~~i~R~~L~~~L~~~~~~~--~i~~~~~~~~i~~~~~~--v~v~~~----------- 134 (373)
T PRK06753 74 LDDKGTL-LTKVKL---KSNTLNVTLPRQTLIDIIKSYVKED--TIFTNHEVTKIENETDK--VTIHFA----------- 134 (373)
T ss_pred EECCCCE-EEEEEC---CCCCCEEEECHHHHHHHHHHHCCCC--EEEECCEEEEEEEECCE--EEEEEC-----------
T ss_conf 9099989-676204---7788348980999999998747458--79958899999930998--999987-----------
Q ss_pred CCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH--HCC-CCCCCCEEEEEECCCCCCCCCC
Q ss_conf 8756302677425786066443255421122489988889899889888875--165-6678880899504347687664
Q gi|254781024|r 173 KHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWK--IKP-QYHRRGLALHSIGWPLDMNTSG 249 (554)
Q Consensus 173 ~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~e--i~~-~~~~~G~~~h~~g~~~~~~~~g 249 (554)
.|.++.+++||+|||++|.+++++......+. .|.. .|. ++. +...+....++++ ..+
T Consensus 135 ----dg~~~~~DlvVGADG~~S~vR~~l~~~~~~~~--------~g~~-~~r~~~~~~~~~~~~~~~~~~~------~~g 195 (373)
T PRK06753 135 ----EQESEAFDLCIGADGIHSVVRQSVNADSKVRY--------QGYT-CFRGLIDDIDLKHPDCAKEYWG------RKG 195 (373)
T ss_pred ----CCCEEEEEEEEECCCCCCHHHHHHCCCCCCCC--------CCEE-EEEEEEECCCCCCCCCEEEEEC------CCC
T ss_conf ----99798887999748877678886367889777--------5728-9999961332589763167855------997
Q ss_pred CEEEEECCCCEEEEEEEECCCCCC---CCCCHHHHHHHHHHC-CCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCCCEE
Q ss_conf 125766479805999983266656---688988999998608-0045650388263035134005421248742308879
Q gi|254781024|r 250 GGFVYHFDDNLVSIGFVLHLDYRN---PWISAYEELQRFKTH-PDIRIIFTEGERLEYGARVISEGGWQSVPKLSFPGGS 325 (554)
Q Consensus 250 ggwiy~~~d~~~~iG~v~~ld~~~---~~~~~~~~lq~fk~h-p~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~g~l 325 (554)
-..++|..++....-..+.....+ ......+....|+.. +.+...+........-.+ +......+++.+.++++
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~p~~~~~~grvv 273 (373)
T PRK06753 196 RVGIVPLLNNQAYWFITINAKENDPKYSSFGKPHLQAYFNHYPNEVREILDKQSETGILLH--DIYDLKPLKSFVYGRTI 273 (373)
T ss_pred EEEEEEECCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCEEE--CCCCCCCCHHHCCCCEE
T ss_conf 6999991399689999984677882223357399999985087889999983784561670--13345433323058589
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 961232331366435226899999999999999874588653036789986420466788874225668876
Q gi|254781024|r 326 LIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEIEDSWRQTQIGKDLWIIRNIKPLLSR 397 (554)
Q Consensus 326 LvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~~Ye~~~~~s~~~~el~~~rn~~~~~~~ 397 (554)
|+||||..+.|..|.|.+.||+.+...|+.+. +.+..+.|..|+++-+. -.-+-.+.+|++...|+.
T Consensus 274 LiGDAAH~m~P~~GQGan~aieDA~~LA~~L~----~~~~~~aL~~Ye~~R~~-r~~~v~~~s~~~~~~~~~ 340 (373)
T PRK06753 274 LLGDAAHATTPNMGQGAGQAMEDAIVLVNCFN----AYDFEKALQRYDKIRVK-HTAKVIKRSRKIGKIAQY 340 (373)
T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCC
T ss_conf 98112355697400017799999999999986----06999999999999999-999999999997567515
No 34
>PRK08132 hypothetical protein; Provisional
Probab=99.94 E-value=2.3e-23 Score=181.25 Aligned_cols=327 Identities=18% Similarity=0.195 Sum_probs=184.1
Q ss_pred HCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHH--CCCHHH--HCCCCCCCEEE
Q ss_conf 10364779998976899999999980899739999786778986402740333678886--787264--14885432243
Q gi|254781024|r 11 DVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSL--LPRWRE--DKGHPFHTVVK 86 (554)
Q Consensus 11 e~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL--~Pd~~e--~~g~pl~~~v~ 86 (554)
+.++.||+||||||+|+++|..|++.| ++|+||||...+..+ --+..+.+++|+-| +.=+.+ ..+.|..
T Consensus 20 ~p~~tpVlIVGaGPvGL~lA~~L~~~G--v~~~vvEr~~~~~~~-pRA~~~~~rtmeil~~lGl~~~i~~~g~~~~---- 92 (549)
T PRK08132 20 DPARHPVVVVGAGPVGLALAIDLAQQG--VPVVLLDDDDTLSTG-SRAICFSKRSLEIFDRLGCGERMVDKGVSWN---- 92 (549)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCC-CCEEEECHHHHHHHHHCCCHHHHHHCCCCCC----
T ss_conf 988699999992579999999999879--999999599999999-9788889899999998699289996177444----
Q ss_pred EEEEEEECCCCCEECCCCCCCCCCCCCCCE-EEEHHHHHHHHHHHHHHC-CCEECCCCEEEEEEECCCCCEEEEEECCCC
Q ss_conf 669999779976773654356544678826-888889899999999874-953306822434776277620145412432
Q gi|254781024|r 87 RDLYWFLNAQRSIQIPHFCLPDFMDNKEHY-IVSLGQVCRWLKNKAEAL-GVEIYCGFTATEIYYGKKGEALGILTGEKG 164 (554)
Q Consensus 87 ~d~~~~l~~~~~~~~p~~~~p~~~~~~g~y-iv~r~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G 164 (554)
..+++ ........++. .|...+....+ .+....+.+.|.+++++. |++++.+++++.+..++++..+.+++.+.
T Consensus 93 ~~~~~-~~~~~~~~~~~--~~~~~~~~p~~~~l~Q~~lE~~L~~~~~~~~~v~vr~g~ev~~~~q~~d~V~~~v~~~~g- 168 (549)
T PRK08132 93 VGKVF-LRDEEVYRFDL--LPEPGHRRPAFINLQQYYIEGYLVDRAQALPNIDLRWKNKVTGVEQHADGVVLTVETPDG- 168 (549)
T ss_pred CCEEE-ECCCEEEEECC--CCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCCEEEEEECCCC-
T ss_conf 64488-56865776047--888887668158679999999999999868997899576899999849946999987998-
Q ss_pred CCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf 44346657875630267742578606644325542112248998888989988988887516566788808995043476
Q gi|254781024|r 165 KNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLD 244 (554)
Q Consensus 165 ~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~ 244 (554)
..+++|+|+|+|||++|.|+++++..|.-... .+.|. +.++......+...+..+.-+
T Consensus 169 -------------~~~vrA~ylVGaDGarS~VR~~lGi~~~G~~~--~~~~l-----v~Dv~~~~~~p~~r~~~~~p~-- 226 (549)
T PRK08132 169 -------------PYTLEADWVIACDGARSPLREMLGLEFKGRTF--EDRFL-----IADVKMKADFPTERWFWFDPP-- 226 (549)
T ss_pred -------------CEEEEEEEEEECCCCCCHHHHHCCCCCCCCCC--CCEEE-----EEEEEECCCCCCEEEEEECCC--
T ss_conf -------------68999889986377877358863998757765--53379-----988885278886347996467--
Q ss_pred CCCCCCEEEEECCCCEEEEEEEECCCCCC-CCCCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCC--CCCCCCCC
Q ss_conf 87664125766479805999983266656-6889889999986080045650388263035134005421--24874230
Q gi|254781024|r 245 MNTSGGGFVYHFDDNLVSIGFVLHLDYRN-PWISAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGW--QSVPKLSF 321 (554)
Q Consensus 245 ~~~~gggwiy~~~d~~~~iG~v~~ld~~~-~~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~--~s~pk~~~ 321 (554)
..+.....+.+..++.-.+-+.+..+... ....+....+++ +..+... ..+.-..+....+ ....++..
T Consensus 227 ~~~~~~~~~~~~~~~~~Ri~~~l~~~~d~~~~~~~e~~~~~v------~~~lg~~--~~~ei~~~s~~~~~~rvA~~~r~ 298 (549)
T PRK08132 227 FHPGQSVLLHRQPDNVWRIDFQLGWDADPEAEKKPENVIPRV------RALLGED--VEFELEWISVYTFQCRRMDRFRH 298 (549)
T ss_pred CCCCCEEEEEECCCCEEEEEEECCCCCCHHHHCCHHHHHHHH------HHHHCCC--CCCCEEEEEEEEEEEEEECCCCC
T ss_conf 799967999977998799998638999844516979999999------9972988--88526999972401277021346
Q ss_pred CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 887996123233136643522689999999999999987458865303678998642
Q gi|254781024|r 322 PGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEIEDSWRQ 378 (554)
Q Consensus 322 ~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~~Ye~~~~~ 378 (554)
++++|+||||....|+-|-|++++|..+.=.|--++..+...-....|..|+..-+.
T Consensus 299 GRVfLaGDAAH~~pP~GGqGmNtGi~DA~NLaWKLA~Vl~G~A~~~LLdTY~~ERrp 355 (549)
T PRK08132 299 GRVLFAGDAAHQVSPFGARGANSGVQDADNLAWKLALVLRGRAPDSLLDSYASEREF 355 (549)
T ss_pred CCEEEECCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHCCCCHHHHHH
T ss_conf 858983252123487666544434203778999999997588894221620655148
No 35
>PRK07190 hypothetical protein; Provisional
Probab=99.93 E-value=1e-22 Score=176.82 Aligned_cols=318 Identities=16% Similarity=0.224 Sum_probs=179.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHH--CCCHHH--HCCCCCCCEEEEEE
Q ss_conf 64779998976899999999980899739999786778986402740333678886--787264--14885432243669
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSL--LPRWRE--DKGHPFHTVVKRDL 89 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL--~Pd~~e--~~g~pl~~~v~~d~ 89 (554)
..||+||||||.|+++|..|++.| ++|+||||...|-.+ --+..+.+++|+-| +-=+.+ ..+.|... ..
T Consensus 5 ~tDVlIVGaGPvGL~lA~~La~~G--v~v~VlEr~~~~~~~-~RA~~l~~rtleil~~~Gl~d~l~~~g~~~~~----~~ 77 (480)
T PRK07190 5 VADVVIVGAGPVGLMCAYLGQRCG--INTVIVDKSDGPLEV-GRADALNARTLQLLELADLFDELYPLGKPCNT----SS 77 (480)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCC-CCEEEECHHHHHHHHHCCCHHHHHHCCCCCCC----EE
T ss_conf 644899993889999999998879--999999699999999-86757568999999975978999851775541----26
Q ss_pred EE----EECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCC
Q ss_conf 99----97799767736543565446788268888898999999998749533068224347762776201454124324
Q gi|254781024|r 90 YW----FLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGK 165 (554)
Q Consensus 90 ~~----~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~ 165 (554)
++ ++...... + ...+...+ .....+....+.+.|.+.+.+.|+++..++.++++..++++.++.+..
T Consensus 78 ~~~~g~~~~~~~~~-~--~~~~~~~~-~~~~~~~Q~~~E~~L~~~~~~~g~~v~~g~~v~~~~~~~~~v~~~l~~----- 148 (480)
T PRK07190 78 VWADGQFISRQSSW-W--EELEGCLH-KHFLMLGQSYVEKLLDEKLKETAAAVKRSTAIVNIEINEAGCLTTLAN----- 148 (480)
T ss_pred ECCCCEEEECCCCC-C--CCCCCCCC-CCEEEECHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCEEEECCC-----
T ss_conf 71288575024666-4--33567777-855851889999999999986699799152899999858935998489-----
Q ss_pred CCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC-----CCCC-CCEEEEEE
Q ss_conf 43466578756302677425786066443255421122489988889899889888875165-----6678-88089950
Q gi|254781024|r 166 NYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKP-----QYHR-RGLALHSI 239 (554)
Q Consensus 166 ~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~-----~~~~-~G~~~h~~ 239 (554)
+.+++|+|+|+|||++|.++|+++..|... .++ ..|.+-. +... +....
T Consensus 149 ------------ge~i~a~ylVGcDGa~S~VRk~lgI~f~~~---~~~-------~~~~~~d~~~~~~~p~~~~~~~--- 203 (480)
T PRK07190 149 ------------GERIQSRYVIGADGSRSFVRNHFAIPFEII---RPQ-------IIWAVIDGVIDTDFPKVPEIIV--- 203 (480)
T ss_pred ------------CCEEEEEEEEEECCCCCHHHHHCCCCCCCC---CCC-------EEEEEEEEEEECCCCCCCCEEE---
T ss_conf ------------989988888860677616788759885567---665-------1799999998158999983799---
Q ss_pred CCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCC
Q ss_conf 43476876641257664798059999832666566889889999986080045650388263035134005421248742
Q gi|254781024|r 240 GWPLDMNTSGGGFVYHFDDNLVSIGFVLHLDYRNPWISAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKL 319 (554)
Q Consensus 240 g~~~~~~~~gggwiy~~~d~~~~iG~v~~ld~~~~~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~ 319 (554)
+. .......| .|....... +.+..+..+ ....+..+++... +.+...+-+.+.+-.. ....... ..+.
T Consensus 204 -~~--~~~~~~~~-~p~~g~~~r--~~~~~~~~~--~t~ee~~~~i~~~--~~~~~~~~~~i~w~s~-~~~~~r~-A~~y 271 (480)
T PRK07190 204 -FQ--AETSDVAW-IPREGEIDR--FYVRMDTKD--FTLQEAMDKINHA--VRPHSLNFKDIVWFSQ-FSVKESV-AEHF 271 (480)
T ss_pred -EE--CCCCCEEE-EECCCCEEE--EEEECCCCC--CCHHHHHHHHHHH--HCCCCCCCEEEEEEEE-ECHHHHH-HHHH
T ss_conf -97--18987799-967898878--999667665--9989999999987--3866566115789974-0055503-7454
Q ss_pred C-CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3-088799612323313664352268999999999999998745886530367899864204667888
Q gi|254781024|r 320 S-FPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEIEDSWRQTQIGKDLW 386 (554)
Q Consensus 320 ~-~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~~Ye~~~~~s~~~~el~ 386 (554)
. .++++|+||||....|+-|-|+++.|..+.=.|--++..+...-....|..|+..-+ .+.+++-
T Consensus 272 r~~GRVfLaGDAAH~~pP~GGqGmNtGiqDA~NLaWKLAavl~G~a~~~LLDsY~~ER~--Pva~~~l 337 (480)
T PRK07190 272 FIQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLMWKLHMVMHFGASKELLHSYEAERK--PVAHGVI 337 (480)
T ss_pred CCCCCEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HHHHHHH
T ss_conf 32794899411431479865662011167788899999999748998278766699889--9999999
No 36
>PRK06834 hypothetical protein; Provisional
Probab=99.93 E-value=1.9e-22 Score=174.91 Aligned_cols=320 Identities=13% Similarity=0.108 Sum_probs=173.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEE-EEEE
Q ss_conf 647799989768999999999808997399997867789864027403336788867872641488543224366-9999
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRD-LYWF 92 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d-~~~~ 92 (554)
||||+||||||+|+++|..|++.| ++|+||||...+-..---...+.+++|+-| +..|.- + .+..+ ....
T Consensus 3 ~~dVlIVGaGPvGL~lA~~La~~G--i~v~viE~~~~~~~~~~RA~~l~~rt~eil-----~~~Gl~-d-~~~~~g~~~~ 73 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAG--VDVAIVERRVDQELVGSRAGGLHARTLEVL-----DQRGIV-D-RFLAEGQVAQ 73 (488)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCEEEECHHHHHHH-----HHCCCH-H-HHHHCCCCCC
T ss_conf 898999893889999999999769--999999689998776984847789999999-----987998-9-9984265211
Q ss_pred ECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 77997677365435654467882688888989999999987495330682243477627762014541243244346657
Q gi|254781024|r 93 LNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQG 172 (554)
Q Consensus 93 l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~ 172 (554)
...-....+.....|.. +...+.+....+.+.|.+.+++.|++++.+++++++..++++.. +.+.+
T Consensus 74 ~~~~~~~~~~~~~~p~~--~~~~~~~~Q~~lE~iL~~~l~~~~~~v~~g~~v~~~~~~~~gV~--v~~~d---------- 139 (488)
T PRK06834 74 VTGFAQIRLDISDFPTR--HNYGLALRQNHIERILAEWVGELGVPIYRGREVTGFTQDDTGVD--VELSD---------- 139 (488)
T ss_pred CCCCCCEECCHHHCCCC--CCCEEEEEHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEE--EEECC----------
T ss_conf 12401202567658777--78378854899999999999858997980888999998399689--99889----------
Q ss_pred CCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEE
Q ss_conf 87563026774257860664432554211224899888898998898888751656678880899504347687664125
Q gi|254781024|r 173 KHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMNTSGGGF 252 (554)
Q Consensus 173 ~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~~~gggw 252 (554)
+.+++|+|+|+|||++|.++++++..+.-.. ..+.+.+ .++.... .+... ......+...
T Consensus 140 -----g~ti~a~ylVGaDGa~S~VR~~lGI~~~G~~--~~~~~~v-----~d~~~~~-~~~~~-------~~~~~~~~~~ 199 (488)
T PRK06834 140 -----GSTLRAQYLVGCDGGRSLVRKAAGIEFPGWD--ATTSYLL-----AEVEMTE-EPPWG-------VRRDALGVHA 199 (488)
T ss_pred -----CCEEEEEEEEEECCCCCHHHHHCCCCCCCCC--CCEEEEE-----EEEECCC-CCCCE-------EECCCCCEEE
T ss_conf -----8279875899706767467886499876787--6527999-----9998147-88730-------2138873589
Q ss_pred EEECCCCEEEEEEEECCC-CCCCCCCHHHHHHH-HHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 766479805999983266-65668898899999-8608004565038826303513400542124874230887996123
Q gi|254781024|r 253 VYHFDDNLVSIGFVLHLD-YRNPWISAYEELQR-FKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKLSFPGGSLIGCA 330 (554)
Q Consensus 253 iy~~~d~~~~iG~v~~ld-~~~~~~~~~~~lq~-fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~g~lLvGDA 330 (554)
+.+..++ ..+.+++... .........+.+++ +..... ..+. -..+.+-.+ .+.. .....++..++++|+|||
T Consensus 200 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~-i~~~~~~s~-f~~~-~r~A~~y~~gRVfLaGDA 273 (488)
T PRK06834 200 FGRLEDE-GPVRVVVTERQLGAAGEPTLDDLREALIAVYG--TDYG-IHSPTWISR-FTDM-ARQAASYRDGRVLLAGDA 273 (488)
T ss_pred EEECCCC-CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHC--CCCC-EEEEEEEEE-CCCH-HEEECCCCCCCEEEECCC
T ss_conf 9731799-55999972654554568988999999988638--8765-002569987-0424-304032347857880350
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 233136643522689999999999999987458865303678998642046678
Q gi|254781024|r 331 AGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEIEDSWRQTQIGKD 384 (554)
Q Consensus 331 AG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~~Ye~~~~~s~~~~e 384 (554)
|..+.|+-|-|++++|..+.=.|--++..++.--....|..|+..-+. +.+.
T Consensus 274 AH~~~P~gGqGmNtGi~DA~NLaWKLA~vl~G~a~~~LLdsY~~ERrp--va~~ 325 (488)
T PRK06834 274 AHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGTSPESLLDTYHAERHP--VAAR 325 (488)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH--HHHH
T ss_conf 114797646521123778888999999997599980887661888899--9999
No 37
>PRK05868 hypothetical protein; Validated
Probab=99.93 E-value=6.3e-23 Score=178.22 Aligned_cols=316 Identities=15% Similarity=0.147 Sum_probs=176.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCE--ECHHHHHHHCCCHHHHCCC---CCCCEEEEEEEE
Q ss_conf 79998976899999999980899739999786778986402740--3336788867872641488---543224366999
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAI--IDPIGIDSLLPRWREDKGH---PFHTVVKRDLYW 91 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~v--l~p~aL~eL~Pd~~e~~g~---pl~~~v~~d~~~ 91 (554)
|+|||||+||+++|+.|+|.| ++|.|+||.+.++.. |.. |.|.+++-| +..|. .....+......
T Consensus 4 VlIvGaGiAGlalA~~L~r~G--~~VtV~Er~p~~r~~---G~~i~l~~~a~~vL-----~~mGl~d~~~~~~~~~~~~~ 73 (372)
T PRK05868 4 VLVSGASVAGTAAAYWLGRHG--YSVTMVERHPGLRPG---GQAIDVRGPALDVL-----ERMGLLAAAQERKTRIRGAS 73 (372)
T ss_pred EEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCC---CCEEEECHHHHHHH-----HHCCCHHHHHHHCCCCCCEE
T ss_conf 999898889999999998589--988999579998889---96674686999999-----98789789986157864239
Q ss_pred EECCCCC-EECCCCCCCCCC-CCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCC
Q ss_conf 9779976-773654356544-67882688888989999999987495330682243477627762014541243244346
Q gi|254781024|r 92 FLNAQRS-IQIPHFCLPDFM-DNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDG 169 (554)
Q Consensus 92 ~l~~~~~-~~~p~~~~p~~~-~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~ 169 (554)
+.+.++. +.......|... .+...+.+.|..+.+.|.. |.+.+++++.+.+++.+- +++..+.|...+
T Consensus 74 ~~d~~G~~l~~~~~~~~~g~~~~~~~~~i~R~dL~~~L~~-a~~~~v~~~~g~~v~~i~--~~~~~V~V~f~d------- 143 (372)
T PRK05868 74 VVDRDGNELSRDTESTPTGGPINSPDIELLRDDLVELLYG-ATQPTVEYLFDDSISTLQ--DDGAAVRVTFER------- 143 (372)
T ss_pred EEECCCCEEEECCCCCCCCCCCCCCEEEHHHHHHHHHHHH-HCCCCEEEEECCEEEEEE--ECCCEEEEEEEC-------
T ss_conf 9948998987526666556756884000319999999986-345880999578889999--649979999907-------
Q ss_pred CCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 65787563026774257860664432554211224899888898998898888751656678880899504347687664
Q gi|254781024|r 170 TQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMNTSG 249 (554)
Q Consensus 170 ~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~~~g 249 (554)
+...++++||+|||.+|.+++.+. +-... ....++. ...++.+|... .... + ..|.. +...
T Consensus 144 --------g~~~~~DlVIGADGi~S~VR~~~f---gp~~~-~~~~lg~-~~a~~~~p~~~-~~~~-~--~~~~~--g~~~ 204 (372)
T PRK05868 144 --------AAAREFDLVIGADGLHSNVRRLVF---GPEEQ-FIKRLGT-HAAIFTVPNFL-ELDY-W--QTWHY--GDST 204 (372)
T ss_pred --------CCEEEEEEEEECCCCCHHHHHHHC---CCCCC-CCCEEEE-EEEEEECCCCC-CCCC-E--EEEEE--CCCC
T ss_conf --------985786589974787417788752---88544-2011247-99999668866-7762-4--78985--6982
Q ss_pred CEEEEECCCCEEE---EEEEE---CCCCCCCCCCHHHHHHHHHHC----CCHHHHHCCCCEECCCCEECCCCCCCCCCCC
Q ss_conf 1257664798059---99983---266656688988999998608----0045650388263035134005421248742
Q gi|254781024|r 250 GGFVYHFDDNLVS---IGFVL---HLDYRNPWISAYEELQRFKTH----PDIRIIFTEGERLEYGARVISEGGWQSVPKL 319 (554)
Q Consensus 250 ggwiy~~~d~~~~---iG~v~---~ld~~~~~~~~~~~lq~fk~h----p~i~~~l~gg~~~~yga~~ip~gg~~s~pk~ 319 (554)
-..+|+..++... +++.- ..++........+..++|... +.+...+......-+. .. ....+|+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gw~~~~ll~~~~~~~d~~~~----~~-~q~~~~~W 279 (372)
T PRK05868 205 MAGVYSARDNTEARAALGFMDTELRIDYRDTEAQFAELERRMAEDGWVRAQLLHYMRSAPDFYFD----EM-SQILMDRW 279 (372)
T ss_pred EEEEEECCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEC----CC-CEEECCCC
T ss_conf 89999778997579999942753356655623358999987420587637898762247635741----32-02147875
Q ss_pred CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 30887996123233136643522689999999999999987458865303678998642
Q gi|254781024|r 320 SFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEIEDSWRQ 378 (554)
Q Consensus 320 ~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~~Ye~~~~~ 378 (554)
+.++++|+||||.-+.|+.|.|...||..+...|+.+.++ .+|....+..||+++|.
T Consensus 280 ~~GRVvLlGDAAH~~sP~~GQGa~~Ai~dA~vLA~eL~~~--~~d~~~A~~~Ye~~~rp 336 (372)
T PRK05868 280 SRGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELKAA--GDDYQLGFANYHAEFHG 336 (372)
T ss_pred CCCCEEEEECCHHHCCHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHH
T ss_conf 7598998651220187677799999999999999999877--99999999999998618
No 38
>PRK08948 consensus
Probab=99.93 E-value=1.1e-22 Score=176.61 Aligned_cols=324 Identities=16% Similarity=0.161 Sum_probs=188.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCC-CCEEEEEECCCCC-CCCC---CCCCEECHHHHHHH--CCCHHHHCCCCCCCEEEE
Q ss_conf 477999897689999999998089-9739999786778-9864---02740333678886--787264148854322436
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINP-HLSVVILEKSAEV-GAHI---LSGAIIDPIGIDSL--LPRWREDKGHPFHTVVKR 87 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~-~l~VlvlEK~~~p-G~~i---~sG~vl~p~aL~eL--~Pd~~e~~g~pl~~~v~~ 87 (554)
|||+||||||+|+++|+.|+++++ +++|.|+|+.... ..+. .-.-.|.+.+++-| +--|.+.. +...++..
T Consensus 1 fDV~IvGaG~vGl~lAlaL~~l~~~~l~v~lie~~~~~~~~~p~~d~Ra~al~~~s~~~L~~lGvw~~l~--~~~~pi~~ 78 (392)
T PRK08948 1 MSVIIVGGGMAGATLALAISRLSHGALPVALIEATAPESDAHPGFDARAIALAAGTCQQLARIGVWSALA--DCATAITH 78 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCCHHHH--HHCCCCCE
T ss_conf 9499999589999999999861679984999827887544578888434575699999999879947778--50663007
Q ss_pred EEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH-CCCEECCCCEEEEEEECCCCCEEEEEECCCCCC
Q ss_conf 6999977997677365435654467882688888989999999987-495330682243477627762014541243244
Q gi|254781024|r 88 DLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEA-LGVEIYCGFTATEIYYGKKGEALGILTGEKGKN 166 (554)
Q Consensus 88 d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~-~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~ 166 (554)
-.++-....+.+.+... ..-...-+|++....+.+.|.+.+.+ .+++++.+.+++++..++++..+ ...
T Consensus 79 i~v~d~~~~~~~~~~~~---~~~~~~lg~iv~~~~l~~~L~~~l~~~~~v~~~~~~~v~~i~~~~~~v~v--~l~----- 148 (392)
T PRK08948 79 VHVSDRGHAGFVTLAAE---DYGVAALGYVVELHDVGQRLFALLRKAPGVTLHCPARVANVARTQESVTV--TLD----- 148 (392)
T ss_pred EEEEECCCCCEEECCHH---HCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCCEEE--EEC-----
T ss_conf 89840787762543766---60885311278799999999999975899878558768998855882799--978-----
Q ss_pred CCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf 34665787563026774257860664432554211224899888898998898888751656678880899504347687
Q gi|254781024|r 167 YDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMN 246 (554)
Q Consensus 167 k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~ 246 (554)
.+.+++|+++|+|||++|.++++++-.+.-... .|. ++ +..+..+....+..+..| .+
T Consensus 149 ----------~g~~~~a~llVgaDG~~S~vR~~~gi~~~~~~y--~q~-al----v~~v~~~~~~~~~a~q~F---~~-- 206 (392)
T PRK08948 149 ----------NGETLQGKLLVAADGSHSALAQACGIDWQQHDY--EQV-AV----IANVTTSEPHQGRAFERF---TE-- 206 (392)
T ss_pred ----------CCCEEEECEEEEECCCCHHHHHHCCCCCCCCCC--CCE-EE----EECCCCCCCCCCEEEEEE---CC--
T ss_conf ----------998998378999189973777743067625667--636-99----941334678764799985---69--
Q ss_pred CCCCEEEEECCCCEEEEEEEECCCCCCC--CCCHHHHHHHHHHCCCHHHHHCCCCEECCCCE-ECCCCCCCCCCCCCCCC
Q ss_conf 6641257664798059999832666566--88988999998608004565038826303513-40054212487423088
Q gi|254781024|r 247 TSGGGFVYHFDDNLVSIGFVLHLDYRNP--WISAYEELQRFKTHPDIRIIFTEGERLEYGAR-VISEGGWQSVPKLSFPG 323 (554)
Q Consensus 247 ~~gggwiy~~~d~~~~iG~v~~ld~~~~--~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~-~ip~gg~~s~pk~~~~g 323 (554)
.|---++|+.+++.++-+....+..+. ..+..+..+++... +...+ ++....+.+ ..|.. .....+.+.++
T Consensus 207 -~Gp~allPl~~~~~s~Vw~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~l--g~~~~~~~~~~~pl~-~~~a~~~~~~R 280 (392)
T PRK08948 207 -HGPLALLPMSDGRSSLVWCHPLERREEVLSWSDERFLAELQQA--FGWRL--GKITHAGKRSAYPLA-LRTAAQHISHR 280 (392)
T ss_pred -CCCEEEEECCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHH--HCCCC--CCEEEECCCCCCCHH-HHHHHHHHCCC
T ss_conf -9976998779996999996788889988649999999999998--44402--444770341247267-76789874167
Q ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CC--CCHHHHHHHHHH
Q ss_conf 79961232331366435226899999999999999874588-65--303678998642
Q gi|254781024|r 324 GSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGK-KH--DDPIEIEDSWRQ 378 (554)
Q Consensus 324 ~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~-~~--~~l~~Ye~~~~~ 378 (554)
++|+||||..+.|+-|-|.+.+|......|+.+.++...|. .. ..|.+|+.+-+.
T Consensus 281 v~LiGDAAH~ihP~aGQGlNlGl~Da~~La~~L~~~~~~g~d~g~~~~L~~Y~~~R~~ 338 (392)
T PRK08948 281 LALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQAQERGEDIGDYAVLSRYQQRRQS 338 (392)
T ss_pred EEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 3673204532797304612157899999999999998549997719999999999999
No 39
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.93 E-value=3.3e-22 Score=173.22 Aligned_cols=326 Identities=18% Similarity=0.150 Sum_probs=174.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC--CCCCCCCCEECHHHHHHH----CCCHHHHCCCCCCCEEE
Q ss_conf 364779998976899999999980899739999786778--986402740333678886----78726414885432243
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEV--GAHILSGAIIDPIGIDSL----LPRWREDKGHPFHTVVK 86 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~p--G~~i~sG~vl~p~aL~eL----~Pd~~e~~g~pl~~~v~ 86 (554)
|..+|+||||||+|+++|..|++.| ++|+||||.+.+ -.++ -.+++++.+++-| +-+=....+.|
T Consensus 1 mrt~V~IVGaGP~GL~LA~lLar~G--I~~vVlEr~~~~~v~~~~-RA~~l~~~tlell~~~Gl~~rl~~~g~~------ 71 (392)
T PRK08243 1 MRTQVAIIGAGPAGLLLGQLLHLAG--IDSVVLERRSREYVLGRI-RAGVLEQGTVDLLREAGVGERMDREGLV------ 71 (392)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCC-CEEEECHHHHHHHHHCCCHHHHHHCCCC------
T ss_conf 9988999997799999999999779--988999768997767887-6531088999999985988789743773------
Q ss_pred EEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCC
Q ss_conf 66999977997677365435654467882688888989999999987495330682243477627762014541243244
Q gi|254781024|r 87 RDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKN 166 (554)
Q Consensus 87 ~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~ 166 (554)
++.+.+........++...... .....+....++.+-|.+.+++.|+.++.+...+.+. +.++....|.....|
T Consensus 72 ~~g~~l~~~g~~~rid~~~l~~---g~~~~~y~Q~ev~~~L~~a~~~~g~~i~~~~~~v~~~-d~~~~~~~V~~~~dG-- 145 (392)
T PRK08243 72 HDGIELAFDGRRHRIDLTELTG---GRSVTVYGQTEVTRDLMAAREAAGGPIVFEASDVALH-DFDGDRPYVTYTKDG-- 145 (392)
T ss_pred CCCEEEEECCEEEEECCCCCCC---CCCEEECCHHHHHHHHHHHHHHCCCEEEEEEEEEEEE-ECCCCCEEEEEECCC--
T ss_conf 5643999899776605544688---9610335818999999999997699799905999999-569982599994499--
Q ss_pred CCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHH-HHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf 34665787563026774257860664432554211224899888898998898-88875165667888089950434768
Q gi|254781024|r 167 YDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGI-KELWKIKPQYHRRGLALHSIGWPLDM 245 (554)
Q Consensus 167 k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gv-ke~~ei~~~~~~~G~~~h~~g~~~~~ 245 (554)
...+++|+|+|+|||++|.+++.+.... .... .+.|..+. --+.+.++.... .. |. .
T Consensus 146 ----------~~~~l~a~yvVGcDG~~S~vR~~ip~~~-~~~~--~~~yp~~wlgilad~pp~~~e----li---y~--~ 203 (392)
T PRK08243 146 ----------ETHRIDCDFIAGCDGFHGVSRQSIPADA-LREF--ERVYPFGWLGILADAPPVSDE----LI---YA--N 203 (392)
T ss_pred ----------CEEEEEEEEEEECCCCCCCCCCCCCCCC-CCEE--EEECCCCEEEEEECCCCCCCE----EE---EE--E
T ss_conf ----------3799998467516889875201115666-5022--343043304578426998760----69---87--8
Q ss_pred CCCCCEEEEECCCCEEEEEEEECCCCCCCCCCH---HHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCC
Q ss_conf 766412576647980599998326665668898---89999986080045650388263035134005421248742308
Q gi|254781024|r 246 NTSGGGFVYHFDDNLVSIGFVLHLDYRNPWISA---YEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKLSFP 322 (554)
Q Consensus 246 ~~~gggwiy~~~d~~~~iG~v~~ld~~~~~~~~---~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~ 322 (554)
...|...+.+...+...+-+-+..+-.....+. .+++++... +.....+..+...+. ...|...+. ..++...
T Consensus 204 ~~~gfal~~~r~~~~~R~y~q~~~~~~~e~~~de~~~~eL~~rl~-~~~~~~l~~g~~~~~--sv~~lrs~v-ae~~r~G 279 (392)
T PRK08243 204 HERGFALCSMRSPTRSRYYLQCPLDDKVEDWSDERFWDELRRRLP-ADDAERLVTGPSIEK--SIAPLRSFV-AEPMQFG 279 (392)
T ss_pred CCCCEEEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCCCEEECCEEEE--EEEEHHHHH-HHHHCCC
T ss_conf 798379997038980089998089998232774668999997517-322440023553456--662056550-0866538
Q ss_pred CEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH-HHHHHH
Q ss_conf 8799612323313664352268999999999999998745886530367899-864204
Q gi|254781024|r 323 GGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEIED-SWRQTQ 380 (554)
Q Consensus 323 g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~~Ye~-~~~~s~ 380 (554)
+++|+||||..+.|+-|+|+++||..+...|..+++.+..++. +.|..|.+ .+++-|
T Consensus 280 RvfLaGDAAHi~pP~GgqGmN~gi~DA~nLawkLaa~l~~~~~-~~ld~Ys~~~l~rvw 337 (392)
T PRK08243 280 RLFLAGDAAHIVPPTGAKGLNLAASDVRYLSRALVEFYREGDT-DGLDAYSATALARVW 337 (392)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHH
T ss_conf 8999961003278403446758999999999999999842986-777787799999999
No 40
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.92 E-value=5.9e-22 Score=171.47 Aligned_cols=325 Identities=16% Similarity=0.099 Sum_probs=177.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC-CCCCCC---CCCCEECHHHHHHH--CCCHHHHCCCCCCCEEEE
Q ss_conf 647799989768999999999808997399997867-789864---02740333678886--787264148854322436
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA-EVGAHI---LSGAIIDPIGIDSL--LPRWREDKGHPFHTVVKR 87 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~-~pG~~i---~sG~vl~p~aL~eL--~Pd~~e~~g~pl~~~v~~ 87 (554)
+|||+||||||+|+++|..|++.| ++|+|||+.. .+.... .-...+.+.+++-| +.-|.... .....++..
T Consensus 4 ~~DV~IvGaGp~Gl~lA~~La~~G--~~v~viE~~~~~~~~~~~~d~R~~al~~~s~~~L~~lG~~~~i~-~~~~~p~~~ 80 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKDSD--LRIAVIEGQLPEEELNELPDVRVSALSRASEHILRNVGAWQGIE-ARRAAPYTA 80 (405)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHH-HHCCCCEEE
T ss_conf 876899991589999999998589--97899937998634467898658887899999999879855567-623785125
Q ss_pred EEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH-CCCEECCCCEEEEEEECCCCCEEEEEECCCCCC
Q ss_conf 6999977997677365435654467882688888989999999987-495330682243477627762014541243244
Q gi|254781024|r 88 DLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEA-LGVEIYCGFTATEIYYGKKGEALGILTGEKGKN 166 (554)
Q Consensus 88 d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~-~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~ 166 (554)
-.++-......+.+..... -...-+|++....+..-|.+++.+ .+++++.+.++..+..++++..+.+.
T Consensus 81 ~~v~~~~~~~~i~~~~~~~---~~~~lg~iv~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v~~~------- 150 (405)
T PRK08850 81 MEVWEQDSFARIEFDAESM---AQPDLGHIVENRVIQLALLEQIQKQDNVTLLMPARCQSIAVGESEAWLTLD------- 150 (405)
T ss_pred EEEEECCCCCEECCCHHHC---CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEEEEECCCCEEEEEC-------
T ss_conf 8998479874312474441---785421246449999999999973899199737535567617971599977-------
Q ss_pred CCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf 34665787563026774257860664432554211224899888898998898888751656678880899504347687
Q gi|254781024|r 167 YDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMN 246 (554)
Q Consensus 167 k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~ 246 (554)
.+..++|+++|+|||.+|.|+++++..+.-. .-.|++- +..+..+....+.....+ .+
T Consensus 151 ----------~g~~i~a~llVgaDG~~S~vR~~lgi~~~~~--~y~~~~l-----v~~v~~~~~~~~~a~q~f---~~-- 208 (405)
T PRK08850 151 ----------NGQALTAKLVVGADGANSWVRRQLDIPLTHW--DYGHSAL-----VANVRTVEPHNSVARQIF---TP-- 208 (405)
T ss_pred ----------CCCEEEEEEEEEECCCCHHHHHHCCCCEECC--CCCCEEE-----EEEEECCCCCCCEEEEEE---CC--
T ss_conf ----------9988875089991698737899729633346--7661699-----999971677776048998---79--
Q ss_pred CCCCEEEEECCC-CEEEEEEEECCCCCCCC--CCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCCC
Q ss_conf 664125766479-80599998326665668--898899999860800456503882630351340054212487423088
Q gi|254781024|r 247 TSGGGFVYHFDD-NLVSIGFVLHLDYRNPW--ISAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKLSFPG 323 (554)
Q Consensus 247 ~~gggwiy~~~d-~~~~iG~v~~ld~~~~~--~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~g 323 (554)
.|-.-+.|+.+ +..++-+.+..+..... .+..+..+++... +...+.-.+... .....|... ....+++.++
T Consensus 209 -~Gp~a~lPl~~~~~~~ivw~~~~~~~~~l~~~~~~~~~~~l~~~--~~~~lg~~~~~~-~~~~fpl~~-~~a~~~~~~r 283 (405)
T PRK08850 209 -QGPLAFLPLSEPNLSSIVWSTEPLRAEALVAMSDEEFNKQLTAA--FDNRLGLCEVVG-ERQAFPLKM-RYARDFVRER 283 (405)
T ss_pred -CCCEEEEECCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHH--HHCCCCCEEEEE-CCEECHHHH-HHHHHHHCCC
T ss_conf -99879987589987999982586668887629999999999987--412055238852-321301666-4267774178
Q ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CC--CHHHHHHHHHH
Q ss_conf 799612323313664352268999999999999998745886-53--03678998642
Q gi|254781024|r 324 GSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKK-HD--DPIEIEDSWRQ 378 (554)
Q Consensus 324 ~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~-~~--~l~~Ye~~~~~ 378 (554)
++|+||||..+.|+-|-|.+.+|..+...|+.+.++...+.. .+ .|.+|++.-+.
T Consensus 284 v~LiGDAAH~~~P~aGQG~Nlgi~Da~~La~kL~~~~~~g~d~g~~~~L~~Y~~~R~~ 341 (405)
T PRK08850 284 VALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGKDIGLKRNLRGYERWRKA 341 (405)
T ss_pred CEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 1773435640795121625057889999999999998649997659999999999999
No 41
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.92 E-value=7.1e-23 Score=177.85 Aligned_cols=317 Identities=15% Similarity=0.149 Sum_probs=173.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC-CCCCCC----CCCCEECHHHHHHH--CCCHHHHC---CCCCCC
Q ss_conf 647799989768999999999808997399997867-789864----02740333678886--78726414---885432
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA-EVGAHI----LSGAIIDPIGIDSL--LPRWREDK---GHPFHT 83 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~-~pG~~i----~sG~vl~p~aL~eL--~Pd~~e~~---g~pl~~ 83 (554)
+|||+||||||+|+++|+.|++.| ++|+|||+.. .+-... .-...+.+.+++-| +.-|.... -.|+.
T Consensus 3 ~~DV~IvGaG~vGl~lAl~La~~G--~~V~iiE~~~p~~~~~~~~~~~R~~al~~~s~~~L~~lG~~~~i~~~~~~~~~- 79 (384)
T PRK08849 3 KYDIAVVGGGMVGAATAIGFAKQG--RSVAVIEGFEPKAFEASQPMDIRVSAISQNSVDLLESLGAWSSIVAMRVCPYK- 79 (384)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCCEEEEEECHHHHHHHHHCCCHHHHHHCCCCCCC-
T ss_conf 189999992499999999999579--95999968998766666787705678679999999987986468761478600-
Q ss_pred EEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH-CCCEECCCCEEEEEEECCCCCEEEEEECC
Q ss_conf 24366999977997677365435654467882688888989999999987-49533068224347762776201454124
Q gi|254781024|r 84 VVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEA-LGVEIYCGFTATEIYYGKKGEALGILTGE 162 (554)
Q Consensus 84 ~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~-~Gvei~~g~~v~~i~~~e~g~vvgv~t~~ 162 (554)
.-..+ -.......+... ..-.+.-+|++....+...|.++++. .+++++.+.+++++..++++..+...
T Consensus 80 ---~~~~~-~~~~~~~~f~~~---~~~~~~lg~iv~~~~l~~~L~~~~~~~~~i~~~~~~~v~~~~~~~~~~~v~l~--- 149 (384)
T PRK08849 80 ---RLETW-EHPECRTRFHSD---ELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLLCPEKLKDLEFSAEGNRVTLE--- 149 (384)
T ss_pred ---EEEEE-CCCCCCCCCCHH---HCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCEEEEEEC---
T ss_conf ---25530-177644124853---43863000034379999999999984899199838778898853881499978---
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 32443466578756302677425786066443255421122489988889899889888875165667888089950434
Q gi|254781024|r 163 KGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWP 242 (554)
Q Consensus 163 ~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~ 242 (554)
.+.+++|+++|+|||++|.++++++..+.- ..-.|+.. +..+..+....+..+..+
T Consensus 150 --------------~g~~i~a~llIgADG~~S~vR~~~gi~~~~--~~y~q~~~-----v~~v~~~~~~~~~a~q~f--- 205 (384)
T PRK08849 150 --------------SGAEIEAKWVIGADGANSQVRQLAGIGITA--WDYRQHCM-----LINVETEQPQQDITWQQF--- 205 (384)
T ss_pred --------------CCCEEEEEEEEEEECCCHHHHHHCCCCEEC--CCCCEEEE-----EEEEECCCCCCCCEEEEE---
T ss_conf --------------999998547999207864667733885450--47745899-----999852688777508998---
Q ss_pred CCCCCCCCEEEEECCCCEEEEEEEECCCCCC--CCCCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCC
Q ss_conf 7687664125766479805999983266656--68898899999860800456503882630351340054212487423
Q gi|254781024|r 243 LDMNTSGGGFVYHFDDNLVSIGFVLHLDYRN--PWISAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKLS 320 (554)
Q Consensus 243 ~~~~~~gggwiy~~~d~~~~iG~v~~ld~~~--~~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~ 320 (554)
.+. ...+ +.|+.++..++-+....+..+ ...++.+..+.+..+.. ..+..-+..... ..|... ...++.+
T Consensus 206 ~~~--gp~a-~lPl~~~~~s~vw~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~l~~~~~~~~~--~~pl~~-~~a~~~~ 277 (384)
T PRK08849 206 TPS--GPRS-FLPLQGNQGSLVWYDSPKRIKQLSAMSPEQLRSEILRHFP--AELGEFKVLQFG--SFPLTR-RHAQQYV 277 (384)
T ss_pred CCC--CCEE-EEECCCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHH--HHCCCEEEEEEE--CCHHHH-HHHHHHC
T ss_conf 499--9727-9862799668999658777987543998999999998730--320756999850--335553-3335523
Q ss_pred CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHH
Q ss_conf 0887996123233136643522689999999999999987458865-303678998642
Q gi|254781024|r 321 FPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKH-DDPIEIEDSWRQ 378 (554)
Q Consensus 321 ~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~-~~l~~Ye~~~~~ 378 (554)
.++++|+||||..+.|+-|-|++.++......++.+.+. +... ..|.+|+++-+.
T Consensus 278 ~~rv~LiGDAAH~~~P~aGQG~N~gi~Da~~L~~~l~~~---~~~~~~~L~~Y~~~R~~ 333 (384)
T PRK08849 278 KNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLEETEKQ---GALNDAAFARYERRRRP 333 (384)
T ss_pred CCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHH
T ss_conf 688899725233469721252404699999999999846---88779999999999989
No 42
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.92 E-value=3.2e-22 Score=173.37 Aligned_cols=349 Identities=16% Similarity=0.147 Sum_probs=188.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHH----C-CCHHHHCCCCCCCEEEEEEE
Q ss_conf 779998976899999999980899739999786778986402740333678886----7-87264148854322436699
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSL----L-PRWREDKGHPFHTVVKRDLY 90 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL----~-Pd~~e~~g~pl~~~v~~d~~ 90 (554)
.|+|||||+||+++|+.|+|.|. ++|.|+||.+.++. .-.|-.|.|.+++-| + ..+.... ..+....+.+
T Consensus 2 kV~IVGaGiaGL~lA~~L~r~g~-i~V~V~Er~~~~~~-~GagI~l~pn~~r~L~~lGl~~~~~~~~---~~~~~~~~~~ 76 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSH-LNVQLFEAAPAFGE-VGAGVSFGANAVRAIVGLGLGEAYTQVA---DSTPAPWQDI 76 (414)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-CCEEEEECCCCCCC-CCEEEEECHHHHHHHHHCCCCHHHHHHH---HCCCCCCCEE
T ss_conf 89999944899999999985399-98899942898888-8329999989999999879916999986---2268764205
Q ss_pred EEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCC
Q ss_conf 99779976773654356544678826888889899999999874953306822434776277620145412432443466
Q gi|254781024|r 91 WFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGT 170 (554)
Q Consensus 91 ~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~ 170 (554)
++....+. ..... ........+.+.+.|..|-+.|.+.+.+.. +..+.+++.+..++++ +.+...
T Consensus 77 ~~~~~~~~-~~~~~-~~~~~~~~~~~~i~R~~L~~~L~~~~~~~~--~~~~~~v~~v~~~~~~--v~v~f~--------- 141 (414)
T TIGR03219 77 WFEWRNGS-DASYL-GATIAPGVGQSSVHRADFLDALLKHLPEGI--ASFGKRATQIEEQAEE--VQVLFT--------- 141 (414)
T ss_pred EEEECCCC-CCCCC-CCCCCCCCCCCEECHHHHHHHHHHHCCCCE--EEECCEEEEEEEECCE--EEEEEC---------
T ss_conf 78731577-63212-532357888542849999999985476667--7969899999995892--799987---------
Q ss_pred CCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHH--HHHHH---HHHCCCCCCCCEEEEEECCC-CC
Q ss_conf 57875630267742578606644325542112248998888989988--98888---75165667888089950434-76
Q gi|254781024|r 171 QGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGL--GIKEL---WKIKPQYHRRGLALHSIGWP-LD 244 (554)
Q Consensus 171 ~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~--gvke~---~ei~~~~~~~G~~~h~~g~~-~~ 244 (554)
.|.++++++||+|||.+|.+++.+....+.. ...|+ |.. .++.+ -++.......+...+....+ +.
T Consensus 142 ------dG~~~~aDlVVGADGi~S~vR~~~~~~~~~~-~~~p~-~~g~~~~r~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (414)
T TIGR03219 142 ------DGTEYRCDLLIGADGIKSALRDYVLQGQGQA-PVRPR-FSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMY 213 (414)
T ss_pred ------CCCEEECCEEEECCCCCHHHHHHHHCCCCCC-CCCCC-CCCEEEEEEEECHHHCCHHHHCCCCCCCCCCCCEEE
T ss_conf ------9988722689974764236788873346788-77751-146599999971676020220256652125674389
Q ss_pred CCCCCCEEEEECCCCEE-EE-EEEECCCCC----------CCCCCHHHHHHHHHH-CCCHHHHHCCCCEECCCCEECCCC
Q ss_conf 87664125766479805-99-998326665----------668898899999860-800456503882630351340054
Q gi|254781024|r 245 MNTSGGGFVYHFDDNLV-SI-GFVLHLDYR----------NPWISAYEELQRFKT-HPDIRIIFTEGERLEYGARVISEG 311 (554)
Q Consensus 245 ~~~~gggwiy~~~d~~~-~i-G~v~~ld~~----------~~~~~~~~~lq~fk~-hp~i~~~l~gg~~~~yga~~ip~g 311 (554)
.+..+....||..++.. ++ .++...+.. ....+..+.+++|.. ++.++.++....... ..+..
T Consensus 214 ~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~w~l~ 289 (414)
T TIGR03219 214 LGLDGHILTFPVRQGRLINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLECIPAPT----LWALH 289 (414)
T ss_pred ECCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCC----EEEEE
T ss_conf 74897699998079978999999747665666775556544620499999986689878999997198443----65564
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2124874230887996123233136643522689999999999999987-458865303678998642046678887422
Q gi|254781024|r 312 GWQSVPKLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERL-SNGKKHDDPIEIEDSWRQTQIGKDLWIIRN 390 (554)
Q Consensus 312 g~~s~pk~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal-~~g~~~~~l~~Ye~~~~~s~~~~el~~~rn 390 (554)
....+|+.+.++++|+||||.-+.|..|.|...||+.+...|+.+.++. ..++..+.|..||+.-+. -+.+=-+.+|+
T Consensus 290 ~~~~l~~w~~GRVvLiGDAAHam~P~~GQGa~~AiEDA~vLa~~L~~~~~~~~~~~~al~~Ye~~R~~-R~~~v~~~sr~ 368 (414)
T TIGR03219 290 DLAELPGYVHGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAGDLPALLEAYDDVRRP-RACRVQRTSRE 368 (414)
T ss_pred ECCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_conf 03667752038689984022446877565178899999999998740257744699999999999999-99999999999
Q ss_pred HHHHHHH
Q ss_conf 5668876
Q gi|254781024|r 391 IKPLLSR 397 (554)
Q Consensus 391 ~~~~~~~ 397 (554)
....|+.
T Consensus 369 ~~~~~~~ 375 (414)
T TIGR03219 369 AGELYEL 375 (414)
T ss_pred HHHHHCC
T ss_conf 9998648
No 43
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.92 E-value=1.1e-21 Score=169.69 Aligned_cols=347 Identities=14% Similarity=0.197 Sum_probs=186.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHH-CCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCH--H-HH--CCCCCCCEEEE
Q ss_conf 6477999897689999999998-08997399997867789864027403336788867872--6-41--48854322436
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQ-INPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRW--R-ED--KGHPFHTVVKR 87 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~-~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~--~-e~--~g~pl~~~v~~ 87 (554)
++||+||||||+||++|..|+| .| ++|+||||...+-.. --...+.++.|+-| -.+ . +. .+. .+..
T Consensus 32 ~vDVLIVGAGP~GL~lA~~Lar~~G--v~~~IIDk~~~~~~~-~rA~gl~~RTlEil-~~~Gla~~i~~~g~----~~~~ 103 (634)
T PRK08294 32 EVDVLIVGCGPAGLILAAQLSQFPE--ITTRIVERKPGRLEL-GQADGIACRTMEMF-QAFGFAERILAEAY----WINE 103 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCC--CCEEEECCCCCCCCC-CCCCEECHHHHHHH-HHCCCHHHHHHCCE----ECCE
T ss_conf 5888999965899999999871379--988999279999999-88377778999999-87798589985260----1443
Q ss_pred EEEEEECCC--CCE-ECC-CCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEE--CCCCEEEEEEECCCCC---EEEE
Q ss_conf 699997799--767-736-543565446788268888898999999998749533--0682243477627762---0145
Q gi|254781024|r 88 DLYWFLNAQ--RSI-QIP-HFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEI--YCGFTATEIYYGKKGE---ALGI 158 (554)
Q Consensus 88 d~~~~l~~~--~~~-~~p-~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei--~~g~~v~~i~~~e~g~---vvgv 158 (554)
-.+|-.... ..+ ... ....+.........++...++-++|.+..+..++.+ ..++.+.++-.++++. .+.+
T Consensus 104 ~~~w~~~~~~~~~i~r~~~~~~~~~~~s~~p~~~l~Q~~~e~~l~~~l~~~~~~v~~~~g~~~~~~~~d~~~~~pV~vtl 183 (634)
T PRK08294 104 TAFWKPDPANPARIVRSGRVQDVEDGLSEFPHVILNQARVHDYFLDFMRNSPTRLEPDYGYEFVDLEVDEDGDYPVTVTL 183 (634)
T ss_pred EEEECCCCCCCCCEEECCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEECCCCCCCEEEEE
T ss_conf 78855788777613555757777777677862754548899999999986587078654159988897578775359999
Q ss_pred EECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 41243244346657875630267742578606644325542112248998888989988988887516566788808995
Q gi|254781024|r 159 LTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHS 238 (554)
Q Consensus 159 ~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~ 238 (554)
+..+. . ......+++|||+|+|||++|.|+++|+..|.-... .+.|++ .++.....-|..-..
T Consensus 184 ~~~~~--~-------~~g~~~tvrA~YlVGcDGA~S~VRk~lGi~~~G~~~--~~~w~v-----~Dv~~~tdfPd~r~~- 246 (634)
T PRK08294 184 RRTDG--E-------REGEEETVRAKYVVGCDGARSRVRKSIGRELHGDSA--NHAWGV-----MDVLAVTDFPDIRLK- 246 (634)
T ss_pred EECCC--C-------CCCCEEEEEEEEEEECCCCCCHHHHHCCCCCCCCCC--CCEEEE-----EEEEECCCCCCCCEE-
T ss_conf 72687--6-------678437999617987687763258764987658876--633699-----999853688875347-
Q ss_pred ECCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCC-------CCCCHHHHHHHHHH--CCCHHHHHCCCCEECC------
Q ss_conf 04347687664125766479805999983266656-------68898899999860--8004565038826303------
Q gi|254781024|r 239 IGWPLDMNTSGGGFVYHFDDNLVSIGFVLHLDYRN-------PWISAYEELQRFKT--HPDIRIIFTEGERLEY------ 303 (554)
Q Consensus 239 ~g~~~~~~~~gggwiy~~~d~~~~iG~v~~ld~~~-------~~~~~~~~lq~fk~--hp~i~~~l~gg~~~~y------ 303 (554)
+.......|...+.|..++.. +-+.+.++... ....+.+.+++... +|.- + .-+.+.+
T Consensus 247 --~~i~~~~~g~~~~iPre~~~~-~R~~i~l~~~~~~~~~~~~~~t~e~~~~~~~~il~P~~---l-~~~~v~W~s~y~i 319 (634)
T PRK08294 247 --CAIQSASGGSILLIPREGGYL-VRLYVDLGEVPPDERVAVRNTTVEEVIAKANRILHPYT---L-DVKEVAWWSVYEV 319 (634)
T ss_pred --EEEECCCCCEEEEEECCCCEE-EEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC---C-CEEEEEEEEECCC
T ss_conf --778607996299997789869-99999767668764332000699999999997528566---6-4147878774131
Q ss_pred CCEECCCCCCCCCC----CCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 51340054212487----42308879961232331366435226899999999999999874588653036789986420
Q gi|254781024|r 304 GARVISEGGWQSVP----KLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEIEDSWRQT 379 (554)
Q Consensus 304 ga~~ip~gg~~s~p----k~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~~Ye~~~~~s 379 (554)
+.|... .|...+ ..-.++++|+||||....|.-|-|++++|..+.=.|--++..+..--....|..|+..-+
T Consensus 320 ~~RvA~--~F~d~~~~~~~~r~gRVFLAGDAAH~hsP~gGqGMNtgiqDA~NLgWKLA~Vl~G~A~~~LLdTYe~ERr-- 395 (634)
T PRK08294 320 GHRLTD--RFDDVPAEERGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAHVLSGRSPPELLQTYSAERQ-- 395 (634)
T ss_pred CCEEHH--HHCCCCHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH--
T ss_conf 323111--2224310001343477899353431378643344134220055556578898718898488776899999--
Q ss_pred HHHHHHHHH-HHHHHHHH
Q ss_conf 466788874-22566887
Q gi|254781024|r 380 QIGKDLWII-RNIKPLLS 396 (554)
Q Consensus 380 ~~~~el~~~-rn~~~~~~ 396 (554)
.+-++|-.. |.+...|+
T Consensus 396 pvA~~LI~fD~~~s~lf~ 413 (634)
T PRK08294 396 AIAQELIDFDREWSTMMA 413 (634)
T ss_pred HHHHHHHHHHHHHHHHHC
T ss_conf 999999987799999844
No 44
>PRK08774 consensus
Probab=99.92 E-value=1.4e-21 Score=168.91 Aligned_cols=326 Identities=15% Similarity=0.110 Sum_probs=176.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC---CCCEECHHHHHHH--CCCHHHHCCCCCCCEEEEE
Q ss_conf 6477999897689999999998089973999978677898640---2740333678886--7872641488543224366
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL---SGAIIDPIGIDSL--LPRWREDKGHPFHTVVKRD 88 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~---sG~vl~p~aL~eL--~Pd~~e~~g~pl~~~v~~d 88 (554)
.|||+||||||+|+++|+.|++.| ++|+|||+.+....+.. -.-.+.+..++-| +.=|.+.... ..++..-
T Consensus 4 ~~DVlIVGgGpvGl~lA~~La~~G--~~v~liE~~~~~~~~~~~d~R~~al~~~s~~~L~~lGv~~~l~~~--~~pi~~i 79 (402)
T PRK08774 4 PHDVLIVGGGLVGSSLAIALDRIG--LDVGLVEATPAGAPPAVFDQRNLSFAAATVNALGALGVMAKLRSA--PGPIRRI 79 (402)
T ss_pred CCCEEEECCCHHHHHHHHHHHCCC--CCEEEEECCCCCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHH--CCCEEEE
T ss_conf 987899991699999999996689--978999379988886678731677379999999988986876640--5651799
Q ss_pred EEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHC-CCEECCCCEEEEEEECCCCC-EEEEEECCCCCC
Q ss_conf 9999779976773654356544678826888889899999999874-95330682243477627762-014541243244
Q gi|254781024|r 89 LYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEAL-GVEIYCGFTATEIYYGKKGE-ALGILTGEKGKN 166 (554)
Q Consensus 89 ~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~e~g~-vvgv~t~~~G~~ 166 (554)
.++-......+.+.... .-.+.-+|++.-..+.+.|.++..+. .+.++.+..+..+...+++. .+.+.+.+ |
T Consensus 80 ~v~~~~~~~~~~~~~~~---~~~~~~g~~i~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g-- 153 (402)
T PRK08774 80 HVSRAGDFGRVQLDAAD---YGRDAFGQVVVARDFGEALQARLDELTHLRRYRPARCIGVEPVQDGLRAVRLATAD-G-- 153 (402)
T ss_pred EEEECCCCCEEECCHHH---CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECEEEEEEEEECCCCCEEEEEECC-C--
T ss_conf 98507877556536776---08876432001699999999999857894898222899999953686169999379-9--
Q ss_pred CCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf 34665787563026774257860664432554211224899888898998898888751656678880899504347687
Q gi|254781024|r 167 YDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMN 246 (554)
Q Consensus 167 k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~ 246 (554)
...++|+++|+|||.+|.++++++-.+.- ..-.|++. +..+..+....+..+..|. +
T Consensus 154 -----------~~~i~a~llVgADG~~S~vR~~~gi~~~~--~~y~q~ai-----v~~v~~~~~~~~~a~q~F~---~-- 210 (402)
T PRK08774 154 -----------EQLVRARLVVGADGSHSAVRELLHIGTDQ--HDFLQTLF-----VARVRASRPPDGTAWERFG---E-- 210 (402)
T ss_pred -----------CEEEEECEEEECCCCCCCCHHHCCCCCEE--CCCCCEEE-----EEEEEECCCCCCEEEEECC---C--
T ss_conf -----------57983059999589984523124889630--46773699-----9988504788875799748---9--
Q ss_pred CCCCEEEEECCCCEEEEEEEECCCCCC--CCCCHHHHHHHHHHCCCHHHHHCCCCEECCCCE-ECCCCCCCCCCCCCCCC
Q ss_conf 664125766479805999983266656--688988999998608004565038826303513-40054212487423088
Q gi|254781024|r 247 TSGGGFVYHFDDNLVSIGFVLHLDYRN--PWISAYEELQRFKTHPDIRIIFTEGERLEYGAR-VISEGGWQSVPKLSFPG 323 (554)
Q Consensus 247 ~~gggwiy~~~d~~~~iG~v~~ld~~~--~~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~-~ip~gg~~s~pk~~~~g 323 (554)
.|---+.|.+++..++-..+..+..+ ...+..+.++++... +... -++....+.+ ..|.... ...++..++
T Consensus 211 -~Gp~alLP~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~~l~~~--~~~~--~g~~~~~~~~~~fpL~~~-~a~~~~~~R 284 (402)
T PRK08774 211 -HGPTALLPRGDRHYGAIHCVARAEAETVAALDDAGWLARLQRA--AGWR--AGRFIASGERSAYPLVQV-LANSLIAER 284 (402)
T ss_pred -CCCEEEEECCCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHHH--HCCC--CCCEEEECCCEECHHHHH-HHHHHHCCC
T ss_conf -9978998869986568993354207777547938999999997--4645--765799324314357876-577772588
Q ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 7996123233136643522689999999999999987458865303678998642
Q gi|254781024|r 324 GSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEIEDSWRQ 378 (554)
Q Consensus 324 ~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~~Ye~~~~~ 378 (554)
++|+||||..+.|+-|-|+++++......|+.+.+....-.....|.+|+..-+.
T Consensus 285 v~L~GDAAH~~hP~aGQGlNlGi~Da~~La~~L~~~~~~~g~~~lL~~Y~~eRr~ 339 (402)
T PRK08774 285 VVLLGNAAQTLHPIGAQGFNLGLRDALTLAELIEHDHSDAGAGALLAEYLARRRV 339 (402)
T ss_pred CEEEECHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 3798416544896130215256999999999998742387769999999999999
No 45
>PRK06996 hypothetical protein; Provisional
Probab=99.91 E-value=2.6e-21 Score=167.00 Aligned_cols=320 Identities=15% Similarity=0.088 Sum_probs=176.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCCEEEEEECCCC--CCCCCCCCCEECHHHHHHH--CCCHHHHCCCCCCCEEEE
Q ss_conf 647799989768999999999808--9973999978677--8986402740333678886--787264148854322436
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQIN--PHLSVVILEKSAE--VGAHILSGAIIDPIGIDSL--LPRWREDKGHPFHTVVKR 87 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g--~~l~VlvlEK~~~--pG~~i~sG~vl~p~aL~eL--~Pd~~e~~g~pl~~~v~~ 87 (554)
||||+||||||+|+++|..|+|.+ ++++|.++|+... +..+. -.-.+.+.+++-| +--|. ....|+. .
T Consensus 11 d~DV~IvGaGpvGl~lA~~Lar~~~~~~~~v~lie~~~~~~~~~d~-Ra~al~~~s~~~L~~lG~w~-~~~~~i~----~ 84 (397)
T PRK06996 11 DYDIAIVGAGPVGLALAGWLARRSATRPLSIALIDAREPAASANDP-RAIALSHGSRVLLETLGAWP-ADATPIE----H 84 (397)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCC-CEEEECHHHHHHHHHCCCCC-CCCCCEE----E
T ss_conf 9888999927999999999960168789669997689866678999-39997578999999879984-5687425----9
Q ss_pred EEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCC
Q ss_conf 69999779976773654356544678826888889899999999874953306822434776277620145412432443
Q gi|254781024|r 88 DLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNY 167 (554)
Q Consensus 88 d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k 167 (554)
-.++-....+.+.+..... . ...-+|++....+.+.|.++.+..++.++.+..+.....+.++..+...+..
T Consensus 85 ~~v~~~~~~g~~~~~~~~~--~-~~~lg~iv~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----- 156 (397)
T PRK06996 85 IHVSQRGHFGRTLIDRDDH--D-VPALGYVVRYGSLVAALARAVRGTGVTWLTSTTARAPAQDADGVTLALDTPQ----- 156 (397)
T ss_pred EEEEECCCCCCEECCHHHC--C-CCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCEEEEECCCC-----
T ss_conf 9994057766211265442--8-8522354437999999999997489879834451457763674589960599-----
Q ss_pred CCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 46657875630267742578606644325542112248998888989988988887516566788808995043476876
Q gi|254781024|r 168 DGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMNT 247 (554)
Q Consensus 168 ~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~~ 247 (554)
...+++|+++|+|||.+|.+++.++..+.-... .|++- +..+..+...++..+..|. .
T Consensus 157 ---------~~~~i~a~llVgaDG~~S~vR~~~gi~~~~~~y--~q~al-----v~~v~~~~~~~~~A~q~F~---~--- 214 (397)
T PRK06996 157 ---------GARTLRARIAVQAEGGLFHDQKAKAGKSARRDY--GQTAL-----VGTVTVSAPRPGWAWERFT---H--- 214 (397)
T ss_pred ---------CCEEEEECEEEECCCCCHHHHHHCCCCCCCCCC--CCEEE-----EEEEEECCCCCCEEEEEEC---C---
T ss_conf ---------865998189999599981888863899856667--62599-----9865404799985899844---9---
Q ss_pred CCCEEEEECCCCEE---EEEEEECCCCCC--CCCCHHHHHHHHHHCCCHHHHHCCCCEECCCC-EECCCCCCCCCCCCCC
Q ss_conf 64125766479805---999983266656--68898899999860800456503882630351-3400542124874230
Q gi|254781024|r 248 SGGGFVYHFDDNLV---SIGFVLHLDYRN--PWISAYEELQRFKTHPDIRIIFTEGERLEYGA-RVISEGGWQSVPKLSF 321 (554)
Q Consensus 248 ~gggwiy~~~d~~~---~iG~v~~ld~~~--~~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga-~~ip~gg~~s~pk~~~ 321 (554)
.|---+.|++++.. ++-+....+... ...+..+..+.+... +...+ ++....+. ...|..- ....++..
T Consensus 215 ~GplalLPl~~~~~~~~s~Vws~~~~~a~~~~~l~~~~~~~~l~~~--~~~~l--g~~~~~~~~~~fpl~~-~~a~~~~~ 289 (397)
T PRK06996 215 EGPLALLPLGGPRQADYALVWCCAPDEAARRAALPDDAFLRELGAA--FGTRM--GRFTAIAGRHAFPLGL-NAAHTLVN 289 (397)
T ss_pred CCCEEEEECCCCCCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHHH--HCCCC--CCEEEECCCEECCCHH-HHHHHHHC
T ss_conf 9878998778999885799993587889988659999999999988--55515--6669932631352088-88899752
Q ss_pred CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 88799612323313664352268999999999999998745886530367899864
Q gi|254781024|r 322 PGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEIEDSWR 377 (554)
Q Consensus 322 ~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~~Ye~~~~ 377 (554)
++++|+||||..+.|+-|-|++.++....-.|+.+.+.... ...|..|+++-+
T Consensus 290 ~Rv~L~GDAAH~~hP~aGQGlNlGirDa~~La~~L~~~~~~---~~~L~~Y~~~Rr 342 (397)
T PRK06996 290 GRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSAQGAT---PLALATFAARRA 342 (397)
T ss_pred CCCEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHH
T ss_conf 88468721554489821141413099999999999862689---899999999989
No 46
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; InterPro: IPR010971 This entry represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway . A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions . In Escherichia coli, three enzyme activities have been described: UbiB (which acts first at position 6, see IPR010232 from INTERPRO), UbiH (which acts at position 4, ) and UbiF (which acts at position 5, ). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB) . Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homologue in this subfamily (COQ6, ) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050660 FAD binding, 0006744 ubiquinone biosynthetic process.
Probab=99.91 E-value=3.8e-22 Score=172.77 Aligned_cols=342 Identities=17% Similarity=0.109 Sum_probs=211.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCC---CCCEEEEEECCCCCCC-CCCCCCEECHH-------H---HHHHCCCHHHHCCCCC
Q ss_conf 7799989768999999999808---9973999978677898-64027403336-------7---8886787264148854
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQIN---PHLSVVILEKSAEVGA-HILSGAIIDPI-------G---IDSLLPRWREDKGHPF 81 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g---~~l~VlvlEK~~~pG~-~i~sG~vl~p~-------a---L~eL~Pd~~e~~g~pl 81 (554)
|||||||||+|+++|+.|++.+ ++++|+|||....+.. ....-..++.| + |+. |-=|.... ..-
T Consensus 1 Di~IvGgG~VG~~lA~aL~~~~~~~~~L~~~l~e~~~~~~~~~~~~~~~~D~R~~Al~~~S~~~L~~-lG~W~~~~-~~~ 78 (445)
T TIGR01988 1 DIVIVGGGMVGLALALALASSGSRLKGLKVALIEAQPAEAPSFFAATPGFDNRVSALSAASIRLLEK-LGVWDKIE-PDR 78 (445)
T ss_pred CEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHH-CCCCHHHH-HHH
T ss_conf 9688847388999999984186312473179960521144221125876552201010799999986-79644520-121
Q ss_pred CCEEEEEEEEEECCCC------CEECCCCCCCCCC--CCCCCEEEEHHHHHHHHHHHHHHCC---CEECCCCEEEEEEEC
Q ss_conf 3224366999977997------6773654356544--6788268888898999999998749---533068224347762
Q gi|254781024|r 82 HTVVKRDLYWFLNAQR------SIQIPHFCLPDFM--DNKEHYIVSLGQVCRWLKNKAEALG---VEIYCGFTATEIYYG 150 (554)
Q Consensus 82 ~~~v~~d~~~~l~~~~------~~~~p~~~~p~~~--~~~g~yiv~r~~fd~~L~~~Ae~~G---vei~~g~~v~~i~~~ 150 (554)
.+++..-+++=-+..+ .+.+.... .- ...=+|+|.-..+.+.|.+++.+.. +.+.....+.++..+
T Consensus 79 ~~p~~~~~V~D~~~~g~~~~P~~~~F~~~~---~~~~~~~LG~~ven~~~~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (445)
T TIGR01988 79 AQPIRDIHVSDGGSFGRAPHPAALHFDADE---VGGPAEALGYVVENRVLQQALWEALQELPNEKVTLLCPARVEELPRH 155 (445)
T ss_pred CCCCCEEEEEECCCCCCCCCCEEEEECHHH---CCCCCCCCCEEECHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECC
T ss_conf 263204888726788888886368744344---17880112367118899999999999668964775167214774036
Q ss_pred -----CCCCEEEEEECCCCCCCCCCCCCCCCCEEE---EEEEEEEEECCCCCHHHHHHHHHCCCC-CCCCHHHHHHHHHH
Q ss_conf -----776201454124324434665787563026---774257860664432554211224899-88889899889888
Q gi|254781024|r 151 -----KKGEALGILTGEKGKNYDGTQGKHYIAPML---LLSKYMLVGEGACGSLTRQLIERYSLM-DGRQPQKFGLGIKE 221 (554)
Q Consensus 151 -----e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~---i~Ak~vI~AdG~~s~lak~l~~~~~l~-~~~~p~~~~~gvke 221 (554)
.+...+ ++.+ |.. |+|+++|+|||.+|.|++.++-..... ... | . ++
T Consensus 156 ~~~~~~~~v~~--~L~~---------------G~~~~~l~a~LlvgADG~~S~vR~~~gI~~~~~R~Y~--Q-~--a~-- 211 (445)
T TIGR01988 156 SSKNDSDEVEL--TLSD---------------GRQKLLLRARLLVGADGANSKVRQLAGIPTTGWRDYG--Q-S--AV-- 211 (445)
T ss_pred CCCCCCCCEEE--EECC---------------CCEEEEEEECEEEEECCCCHHHHHHHCCCCCEEECCC--C-E--EE--
T ss_conf 77568860799--9708---------------9476789853278735865257997188843011645--5-3--89--
Q ss_pred HHHHCCCCCCCCEEEEEECCCCCCCCCCCEEEEECC---CCEEEEEEEECCCCCCC--CCCHHHHHHHHHHCCCHHHHHC
Q ss_conf 875165667888089950434768766412576647---98059999832666566--8898899999860800456503
Q gi|254781024|r 222 LWKIKPQYHRRGLALHSIGWPLDMNTSGGGFVYHFD---DNLVSIGFVLHLDYRNP--WISAYEELQRFKTHPDIRIIFT 296 (554)
Q Consensus 222 ~~ei~~~~~~~G~~~h~~g~~~~~~~~gggwiy~~~---d~~~~iG~v~~ld~~~~--~~~~~~~lq~fk~hp~i~~~l~ 296 (554)
|..+..+....+.+|--|. + +.+.-+++ |+. |+++++-+....+..+. .+++.+....+.. .+...+
T Consensus 212 Va~v~~~~~h~~~A~erF~---~-~~GP~AlL-PL~~~dd~~~slVW~~~~~~A~~L~~l~~~~F~~~L~~--~F~~~l- 283 (445)
T TIGR01988 212 VANVKHERPHQGTAWERFL---P-DTGPLALL-PLPDNDDNRSSLVWTLPPEEAERLLALDDEEFLAELNR--AFGSRL- 283 (445)
T ss_pred EEEEEECCCCCCEEEEEEE---C-CCCCEEEC-CCCCCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHH--HHHHHC-
T ss_conf 9999714788964799982---7-99857873-58888896038997389799999867899899999999--853315-
Q ss_pred C----------------------------CCEECCCCEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHH
Q ss_conf 8----------------------------826303513400542124874230887996123233136643522689999
Q gi|254781024|r 297 E----------------------------GERLEYGARVISEGGWQSVPKLSFPGGSLIGCAAGFVNLLRIKGSHNAIIS 348 (554)
Q Consensus 297 g----------------------------g~~~~yga~~ip~gg~~s~pk~~~~g~lLvGDAAG~vnP~~g~GI~~Am~S 348 (554)
| .-...-...+.|....+ ..+.+.++++||||||..+.|+.|-|.++.+..
T Consensus 284 G~~~~~~~~~~~l~~~~~~~~~~~~pp~~~~~~~~~R~~fPL~~~~-A~~yv~~R~aLiGDAAHt~HPlAGQG~NLG~rD 362 (445)
T TIGR01988 284 GDLPYLDQTDFALNELFFRSSEEQYPPLGAITLVGERAAFPLSLRH-AKRYVAPRLALIGDAAHTVHPLAGQGLNLGLRD 362 (445)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCEECCCEEEEECCCCCCCCCHHHH-HHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHH
T ss_conf 7965567899999998732024400682378876876304403343-587625985898054135787100100200789
Q ss_pred HHHHHHHHHHHHHCC-CCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999987458-865--303678998642046678887422566887
Q gi|254781024|r 349 GMLAAEKIVERLSNG-KKH--DDPIEIEDSWRQTQIGKDLWIIRNIKPLLS 396 (554)
Q Consensus 349 G~lAAEai~eal~~g-~~~--~~l~~Ye~~~~~s~~~~el~~~rn~~~~~~ 396 (554)
....||++.+|.+.| |.. ..|.+|+.+-+.. ---=+.-..-+...|+
T Consensus 363 v~~La~~l~~a~~~g~DiG~~~~L~~Y~r~R~~d-n~~~~~~~D~L~~lF~ 412 (445)
T TIGR01988 363 VAALAEVLVEARRRGEDIGSLAVLQRYERRRRFD-NAAMLGATDGLNRLFS 412 (445)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_conf 9999999999884566857777899999974998-9999999999998740
No 47
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.88 E-value=1.8e-20 Score=161.20 Aligned_cols=333 Identities=14% Similarity=0.104 Sum_probs=195.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCC-CEEEEEEEEEECC
Q ss_conf 799989768999999999808997399997867789864027403336788867872641488543-2243669999779
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFH-TVVKRDLYWFLNA 95 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~-~~v~~d~~~~l~~ 95 (554)
|+|||||||||..|+.++++.++..|.|+||... ++----|.|++-.+|+.|...--+... -+. ....=+.+.....
T Consensus 3 I~~iGGGPaGLYfailmK~~~P~~eI~V~ErN~~-~dTfGwGVVfsD~tL~~l~~~Dp~s~~-~i~~~f~~Wddi~v~~~ 80 (770)
T PRK08255 3 IVCIGGGPAGLYFGLLMKLRDPAHEVTVVERNRP-YDTFGWGVVFSDATLGNLRAADPVSAA-AIGDAFNHWDDIEVHFK 80 (770)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCC-CCCEEEEEECCHHHHHHHHHCCHHHHH-HHHHHHCCCCCEEEEEC
T ss_conf 9997787589999999986589997479842799-995244687472666455543999999-99997478636699968
Q ss_pred CCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 97677365435654467882688888989999999987495330682243477627762014541243244346657875
Q gi|254781024|r 96 QRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHY 175 (554)
Q Consensus 96 ~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~ 175 (554)
...+. ...+|..-+.|.++-+.|.++|+++||++..++.+.+... .
T Consensus 81 g~~~~---------~~GhgF~gi~R~~LL~iLq~Ra~~lGV~l~fe~~i~~~~~--~----------------------- 126 (770)
T PRK08255 81 GRRIR---------SGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQA--F----------------------- 126 (770)
T ss_pred CEEEE---------ECCCEEEHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCH--H-----------------------
T ss_conf 90799---------6696066474999999999999983984893263797210--1-----------------------
Q ss_pred CCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEE--E
Q ss_conf 63026774257860664432554211224899888898998898888751656678880899504347687664125--7
Q gi|254781024|r 176 IAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMNTSGGGF--V 253 (554)
Q Consensus 176 ~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~~~gggw--i 253 (554)
.....+++||+|||.||.++.+....|+-+....+.. .+|--....++. .++. +.....|.-| .
T Consensus 127 --~~~~daDLVVaaDG~NS~vR~~~~~~F~p~i~~~~n~------fiWlGT~~~Fda----ftf~--F~~T~hG~~~aHa 192 (770)
T PRK08255 127 --ALQYDADLVIASDGLNSRIRSRYADTFQPDIDTRRCR------FVWLGTHKLFDA----FTFA--FEETEHGWFQAHA 192 (770)
T ss_pred --HHCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCC------EEEECCCCCCCC----CCEE--EECCCCEEEEEEE
T ss_conf --1104789899878716799886577618961446776------497066865654----4400--2207975699997
Q ss_pred EECCCCEEEEEEEECCCCC-CC---CCCHHHHHHHHHHCCCHHHHHCCCCEECCC-----CEECCCCCCCCCCCCCCCC-
Q ss_conf 6647980599998326665-66---889889999986080045650388263035-----1340054212487423088-
Q gi|254781024|r 254 YHFDDNLVSIGFVLHLDYR-NP---WISAYEELQRFKTHPDIRIIFTEGERLEYG-----ARVISEGGWQSVPKLSFPG- 323 (554)
Q Consensus 254 y~~~d~~~~iG~v~~ld~~-~~---~~~~~~~lq~fk~hp~i~~~l~gg~~~~yg-----a~~ip~gg~~s~pk~~~~g- 323 (554)
|++.++.+..=+=+..+.. .- ..+..+..... ...+++.|.|-..+.-. ..++..-.. ...+.+.+|
T Consensus 193 Y~y~~~~STfIVE~~~~tw~~~G~d~~s~~es~a~c--e~iFa~~L~Gh~Li~N~~~~rgs~W~~Fp~v-~~~~W~h~n~ 269 (770)
T PRK08255 193 YRFDDDTSTFIVETPEEVWRAAGFDEMSQEESIAFC--EKLFADYLDGHPLMSNASHLRGSAWINFPRV-ICERWVHWNR 269 (770)
T ss_pred EEECCCCEEEEEECCHHHHHHHCCCCCCHHHHHHHH--HHHHHHHCCCCCCCCCCCCCCCCCCEECCEE-ECCCEEECCC
T ss_conf 543799628999878899987176447978899999--9999986599813346666777633257836-3152232588
Q ss_pred ---EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
Q ss_conf ---79961232331366435226899999999999999874588653036789986420466788874225668876160
Q gi|254781024|r 324 ---GSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEIEDSWRQTQIGKDLWIIRNIKPLLSRFGV 400 (554)
Q Consensus 324 ---~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~~Ye~~~~~s~~~~el~~~rn~~~~~~~~g~ 400 (554)
++|+||||......-|+|+-+||++++..|+++.+. .++..+.|..||+.-|. -+.+--..+||--..|.....
T Consensus 270 ~~~vVLlGDAahTAHFSIGSGTkLAmEDAIaLa~~l~~~--~~~~~~Al~~Ye~~Rr~-~v~~~Q~AA~~S~~WfE~~~r 346 (770)
T PRK08255 270 RVPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEH--PGDLPAALAAYEEERRV-EVLRIQNAARNSTEWFENVER 346 (770)
T ss_pred CCCEEEEECHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHH
T ss_conf 776799603175338667762477899999999999876--99889999999986058-899999999999999986887
Q ss_pred HHHHH
Q ss_conf 46899
Q gi|254781024|r 401 FIGLS 405 (554)
Q Consensus 401 ~~g~~ 405 (554)
+..+-
T Consensus 347 y~~l~ 351 (770)
T PRK08255 347 YADLE 351 (770)
T ss_pred HHCCC
T ss_conf 72899
No 48
>PRK07236 hypothetical protein; Provisional
Probab=99.88 E-value=7.9e-20 Score=156.70 Aligned_cols=329 Identities=15% Similarity=0.104 Sum_probs=160.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCC--CCEEEEEEEEE
Q ss_conf 4779998976899999999980899739999786778986402740333678886787264148854--32243669999
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPF--HTVVKRDLYWF 92 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl--~~~v~~d~~~~ 92 (554)
--|+|||||||||++|+.|++.| ++|.|+||...+-...-.|-.+.|.+++-| +..|... ...+......+
T Consensus 7 ~kV~IVGaGiaGL~~A~~L~~~G--~~v~v~Er~~~~~~~~G~gi~l~p~~~~~L-----~~~G~~~~~~~~~~~~~~~~ 79 (386)
T PRK07236 7 PRAVVVGGSLGGLFAANLLRRAG--WDVDVFERSPTELDGRGGGIVLQPELLRAL-----AFAGVELPADIGVPSRERIY 79 (386)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CCEEEECCCCCCCCCCEEEEECCHHHHHHH-----HHCCCCCHHHCCCCCCCEEE
T ss_conf 96899993689999999998589--998998689986788604997298899999-----97699564751876564699
Q ss_pred ECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 77997677365435654467882688888989999999987495330682243477627762014541243244346657
Q gi|254781024|r 93 LNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQG 172 (554)
Q Consensus 93 l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~ 172 (554)
++.++.+.... .. +....++..+-+.|.+.. .+..+..+.+++.+-.++++ +.+...
T Consensus 80 ~~~~g~~~~~~-~~-------~~~~~~~~~l~~~l~~~l--~~~~i~~g~~v~~v~~~~~~--v~v~~~----------- 136 (386)
T PRK07236 80 LDRDGRVVQRQ-PM-------PQTQTSWNVLYRALRAAL--PAEHYHAGEALERVEQDGDR--VTAHFA----------- 136 (386)
T ss_pred ECCCCCEEEEE-CC-------CCCCHHHHHHHHHHHHHC--CCCEEEECCEEEEEEEECCE--EEEEEC-----------
T ss_conf 94899788761-48-------730114999999999768--99889959999999982997--999987-----------
Q ss_pred CCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHH-HHHH---HHHHHCCCCC---CC------CEEEEEE
Q ss_conf 87563026774257860664432554211224899888898998-8988---8875165667---88------8089950
Q gi|254781024|r 173 KHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFG-LGIK---ELWKIKPQYH---RR------GLALHSI 239 (554)
Q Consensus 173 ~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~-~gvk---e~~ei~~~~~---~~------G~~~h~~ 239 (554)
.|..++|++||+|||++|.+++++.... .|+..+ +.+. ..-.++.... .+ +--.|++
T Consensus 137 ----dG~~~~adlvVGADG~~S~vR~~l~~~~------~~~~~g~~~~rg~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 206 (386)
T PRK07236 137 ----DGREETADLLIGADGGRSAVRAQLLPDV------RPTYAGYVAWRGLVDEAALPDEARAALRDRFAFQQGPGELIL 206 (386)
T ss_pred ----CCCEEEEEEEEECCCCCCCHHHHHCCCC------CCCCCCEEEEEEEEEHHHCCHHHHHHHCCCEEEEECCCCEEE
T ss_conf ----9988776289965887751588747899------974546589999953686886777752374279967996599
Q ss_pred CCCCCCCC-------CCCEEEE--ECCCCEEEEEEEECCCC--C----CCCCCHHHHHHHHHH------CCCHHHHHCCC
Q ss_conf 43476876-------6412576--64798059999832666--5----668898899999860------80045650388
Q gi|254781024|r 240 GWPLDMNT-------SGGGFVY--HFDDNLVSIGFVLHLDY--R----NPWISAYEELQRFKT------HPDIRIIFTEG 298 (554)
Q Consensus 240 g~~~~~~~-------~gggwiy--~~~d~~~~iG~v~~ld~--~----~~~~~~~~~lq~fk~------hp~i~~~l~gg 298 (554)
.++.+... .-+.|++ +.........+....+. + .+.....+.++.+.. .|.+...+...
T Consensus 207 ~y~~~~~~~~~~~g~~~~~~vw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (386)
T PRK07236 207 GYLVPGEDGSTEPGQRRYNWVWYRPASAGEELPELLTDRDGTRRPGSLPPGALRDEVLAELRDAAARLLAPTFAELVDAT 286 (386)
T ss_pred EEEECCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCC
T ss_conf 99823788863445406889998226833555565412456501145784425788999999998754278999998638
Q ss_pred CEECCCCEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 26303513400542124874230887996123233136643522689999999999999987458865303678998642
Q gi|254781024|r 299 ERLEYGARVISEGGWQSVPKLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEIEDSWRQ 378 (554)
Q Consensus 299 ~~~~yga~~ip~gg~~s~pk~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~~Ye~~~~~ 378 (554)
.... ..+..... .|+.+.++++|+||||.-+.|+.|.|.+.||+.+...|+.+.++ .++..+.|..||++-+.
T Consensus 287 ~~~~----~~~i~~~~-~~~~~~gRv~LiGDAAH~m~P~~GQGan~AieDA~~La~~L~~~--~~~~~~al~~Ye~~R~p 359 (386)
T PRK07236 287 AQPF----VQAIFDLE-VPRMAFGRVALLGDAAFVARPHTAMGVAKAAGDAVALAEALAAA--ADDIDAALAAWEAERLA 359 (386)
T ss_pred CCCE----EEEEEECC-CCCCCCCCEEEEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHH
T ss_conf 7511----63413102-65345688899976517579851036899999999999999867--87799999999999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 0466788874225
Q gi|254781024|r 379 TQIGKDLWIIRNI 391 (554)
Q Consensus 379 s~~~~el~~~rn~ 391 (554)
- ..+-...+|.+
T Consensus 360 r-~~~v~~~sr~~ 371 (386)
T PRK07236 360 V-GAAIVARGRDL 371 (386)
T ss_pred H-HHHHHHHHHHH
T ss_conf 9-99999999999
No 49
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.87 E-value=2.1e-19 Score=153.70 Aligned_cols=311 Identities=14% Similarity=0.131 Sum_probs=166.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC---CCCEECHHHHHHH--CCCHHHHCCCCCCCEEEEEE
Q ss_conf 477999897689999999998089973999978677898640---2740333678886--78726414885432243669
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL---SGAIIDPIGIDSL--LPRWREDKGHPFHTVVKRDL 89 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~---sG~vl~p~aL~eL--~Pd~~e~~g~pl~~~v~~d~ 89 (554)
.||+||||||+|+++|..|++.| ++|+|+|+...+..... -.-.+.|.+++-| +-=|.+.. ....++. .
T Consensus 2 ~DV~IvGaG~vGl~lAl~La~~g--~~v~lie~~~~~~~~~~~d~R~~als~~s~~~L~~lgiw~~l~--~~~~~~~--~ 75 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKG--IKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELE--KFVAEMQ--D 75 (374)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCCCCCEEEECHHHHHHHHHCCCCHHHH--HHHHCCE--E
T ss_conf 62999996699999999998579--9699997899788665799634674698999999869848678--8642318--9
Q ss_pred EEEECCCCC--EECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHH-HCCCEECCCCEEEEEEECCCCCEEEEEECCCCCC
Q ss_conf 999779976--7736543565446788268888898999999998-7495330682243477627762014541243244
Q gi|254781024|r 90 YWFLNAQRS--IQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAE-ALGVEIYCGFTATEIYYGKKGEALGILTGEKGKN 166 (554)
Q Consensus 90 ~~~l~~~~~--~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae-~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~ 166 (554)
+.+.+.... +.+... -...-+|+|....+.+.|.+++. ...++++.+..+.++...++..+ +...
T Consensus 76 i~v~d~~~~~~~~~~~~-----~~~~lgyii~~~~l~~~L~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~----- 143 (374)
T PRK06617 76 VYVVDNKASEILDLRND-----ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSI--IKFD----- 143 (374)
T ss_pred EEEECCCCCCEEECCCC-----CCCCCEEEECCHHHHHHHHHHHHCCCCCEEECCCCEEEEECCCCCEE--EECC-----
T ss_conf 99975898853642456-----76543465213899999999996499948975751146652788269--9638-----
Q ss_pred CCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf 34665787563026774257860664432554211224899888898998898888751656678880899504347687
Q gi|254781024|r 167 YDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMN 246 (554)
Q Consensus 167 k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~ 246 (554)
+.+++++++|+|||++|.+++++....... . -|+ ++ +..+..+....+..+..+ .+.+
T Consensus 144 -----------~~~i~~~llIgaDG~~S~vR~~~~~~~~~~-~--yq~---a~--v~~v~~~~~~~~~a~q~F---~~~G 201 (374)
T PRK06617 144 -----------DKQIKCNLLIICDGANSKVRSHYFANEIEK-P--YQT---AL--TFNIKHEKPHENCAMEHF---LPLG 201 (374)
T ss_pred -----------CCEEEEEEEEEECCCCHHHHHHHCCCCCCC-C--CCE---EE--EEEECCCCCCCCCEEEEE---CCCC
T ss_conf -----------967853589995798516688747785142-4--637---99--973201476534025466---4899
Q ss_pred CCCCEEEEECCCCE-EEEEEEECCCCCCCCC-CHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCCCE
Q ss_conf 66412576647980-5999983266656688-988999998608004565038826303513400542124874230887
Q gi|254781024|r 247 TSGGGFVYHFDDNL-VSIGFVLHLDYRNPWI-SAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKLSFPGG 324 (554)
Q Consensus 247 ~~gggwiy~~~d~~-~~iG~v~~ld~~~~~~-~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~g~ 324 (554)
..+ +.|+.++. .++-+....+...... .+.++++.+.+. .....+..-.... .-...|... +..++.+.+++
T Consensus 202 --plA-lLPl~~~~~~siVws~~~~~~~~~~~l~~~~~~~~~~~-~~~~~lg~i~~~~-~~~~fpL~~-~~a~~~~~~rv 275 (374)
T PRK06617 202 --PFA-LLPLKDQYASSVIWSTSSDQAALIVNLPVEEVRFLTQR-NAGNSLGKITIDS-EISSFPLKA-RIANRYFHNKI 275 (374)
T ss_pred --CEE-EEECCCCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHH-HHHHHCCCEEECC-CCEECHHHH-HHCCCCCCCCC
T ss_conf --779-98759998379998277789999974999999999998-5343126568833-211322067-74540126771
Q ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 996123233136643522689999999999999987458865303678998642
Q gi|254781024|r 325 SLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEIEDSWRQ 378 (554)
Q Consensus 325 lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~~Ye~~~~~ 378 (554)
+|+||||..+.|+-|-|.+.+|......++.+.+ ...|.+|+++-+.
T Consensus 276 ~LiGDAAH~ihP~aGQGlNlgi~Dv~~L~~~l~~-------~~~L~~Y~~~R~~ 322 (374)
T PRK06617 276 VLIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN-------NGTLQEYQKLRQE 322 (374)
T ss_pred EEEHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC-------HHHHHHHHHHHHH
T ss_conf 7760034227972126001229999999998625-------6689999999999
No 50
>pfam04820 Trp_halogenase Tryptophan halogenase. Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent.
Probab=99.79 E-value=3.1e-16 Score=131.72 Aligned_cols=326 Identities=16% Similarity=0.126 Sum_probs=184.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CCCEEEEEECCCCCCCCCCCCCEECHH---HHHHH-CC--CHHHHCCCCCCCEEEEE
Q ss_conf 7799989768999999999808-997399997867789864027403336---78886-78--72641488543224366
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQIN-PHLSVVILEKSAEVGAHILSGAIIDPI---GIDSL-LP--RWREDKGHPFHTVVKRD 88 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g-~~l~VlvlEK~~~pG~~i~sG~vl~p~---aL~eL-~P--d~~e~~g~pl~~~v~~d 88 (554)
-|||||||.||..+|..|++.- .+++|.|||...-|.-. -|+...|. .|+.| ++ +|....++-...-+.-.
T Consensus 1 KIvIvGGGTAGWmtA~~L~~~~~~~~~ItlIES~~i~~iG--VGE~T~p~~~~~l~~lGI~e~~fm~~~~AT~K~Gi~F~ 78 (457)
T pfam04820 1 KIVIVGGGTAGWMAAAALARALKGGLDVTLVESEEIGTVG--VGEATIPSIRTFNRMLGIDEAEFMRATQATFKLGIRFE 78 (457)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC--CCCCCHHHHHHHHHHCCCCHHHHHHHCCCEEECCEEEC
T ss_conf 9899898799999999999865999879999679999878--45763799999999839998999997398877837831
Q ss_pred -------EEEEE-CCC----CCEECC---------------------------CCCCCCCCC-------CCCCEEEEHHH
Q ss_conf -------99997-799----767736---------------------------543565446-------78826888889
Q gi|254781024|r 89 -------LYWFL-NAQ----RSIQIP---------------------------HFCLPDFMD-------NKEHYIVSLGQ 122 (554)
Q Consensus 89 -------~~~~l-~~~----~~~~~p---------------------------~~~~p~~~~-------~~g~yiv~r~~ 122 (554)
.+++. ... ....+. ....|+... -.-+|-++-.+
T Consensus 79 nW~~~~~~y~hpF~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~k~~p~~~~~~~~~~~~~yayHfDA~k 158 (457)
T pfam04820 79 DWGRRGERYIHPFGVTGHPIDGVPFHHYWLRLRARGFAGPLDDYCLPAVAALAGKFSPPPKDPRSGLSGLSYAYHFDAAL 158 (457)
T ss_pred CCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECHHH
T ss_conf 86889982483576778775667527999986524778987887699999984699988777666566766468727999
Q ss_pred HHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHH-H
Q ss_conf 899999999874953306822434776277620145412432443466578756302677425786066443255421-1
Q gi|254781024|r 123 VCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQL-I 201 (554)
Q Consensus 123 fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l-~ 201 (554)
|.++|.+.|.+.||+.+.+. |.++..+++|.+..+.+.+ |.++.|++.|++.|.++.|-.+. .
T Consensus 159 ~~~~Lr~~a~~~GV~~i~~~-V~~v~~~~~G~I~sl~l~~---------------G~~i~aDlfIDCTGF~~lLi~~~l~ 222 (457)
T pfam04820 159 YARFLRRNAEARGVTRVEGK-VVDVQLDADGFVTSLRLED---------------GREVEADLFIDCSGFRGLLIEQALK 222 (457)
T ss_pred HHHHHHHHHHHCCCEEEEEE-EEEEEECCCCCEEEEEECC---------------CCEEEEEEEEECCCCCCCCCCCCCC
T ss_conf 99999998885798899847-8799988999678999678---------------9888764899778741100001359
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCHHHH
Q ss_conf 22489988889899889888875165667888089950434768766412576647980599998326665668898899
Q gi|254781024|r 202 ERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMNTSGGGFVYHFDDNLVSIGFVLHLDYRNPWISAYEE 281 (554)
Q Consensus 202 ~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~~~gggwiy~~~d~~~~iG~v~~ld~~~~~~~~~~~ 281 (554)
..|.--...-|-.-++.+ .++.....+ -.|.- .--..|+-|-.|+.+. ...|+|... .+.+..+.
T Consensus 223 ~~~~s~s~~L~~d~Ava~----~~~~~~~~~---pyT~a---tA~~~GW~W~IPL~~R-~G~GYVyss----~~~s~e~A 287 (457)
T pfam04820 223 TGYEDWSDWLPCDRALAV----QCESVGPPE---PYTRA---TAHDAGWRWRIPLQHR-LGNGYVYSS----AHADDDEA 287 (457)
T ss_pred CCCCCHHHCCCCCCEEEE----ECCCCCCCC---CCEEE---EECCCCEEEEEECCCC-CEEEEEECC----CCCCHHHH
T ss_conf 985157560656732566----357678997---50355---6404873686425765-301799638----98998999
Q ss_pred HHHHHHCCCHHHHHCCCCEECCCCEECCC-CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99986080045650388263035134005-42124874230887996123233136643522689999999999999987
Q gi|254781024|r 282 LQRFKTHPDIRIIFTEGERLEYGARVISE-GGWQSVPKLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERL 360 (554)
Q Consensus 282 lq~fk~hp~i~~~l~gg~~~~yga~~ip~-gg~~s~pk~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal 360 (554)
.+.++.|..-... ...+.|.. -|+ ..+....|++.||-||||+.|+-.-||+..+.+-...+ +.+
T Consensus 288 ~~el~~~~~~~~~--------~~~r~i~f~~G~--~~~~W~kNcvaiGLsagFiEPLEsT~i~l~~~~i~~l~----~~~ 353 (457)
T pfam04820 288 LAELLANLGGIPL--------AEPRLIRFTTGR--RKQAWVKNVVALGLASGFLEPLESTSIHLIQSALRRLL----ALF 353 (457)
T ss_pred HHHHHHHCCCCCC--------CCCCEEECCCCC--EEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH----HHC
T ss_conf 9999986287644--------677523000674--00044688899831025677722222999999999999----965
Q ss_pred HCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45886530-3678998642046678887422566
Q gi|254781024|r 361 SNGKKHDD-PIEIEDSWRQTQIGKDLWIIRNIKP 393 (554)
Q Consensus 361 ~~g~~~~~-l~~Ye~~~~~s~~~~el~~~rn~~~ 393 (554)
..+..... ..+|.++++..| ...|.|-.
T Consensus 354 p~~~~~~~~~~~yN~~~~~~~-----~~~~dFi~ 382 (457)
T pfam04820 354 PDGGFDPAAIAEYNRRIAREY-----ERIRDFII 382 (457)
T ss_pred CCCCCCHHHHHHHHHHHHHHH-----HHHHHHHH
T ss_conf 778888799999999999999-----99999999
No 51
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase; InterPro: IPR011295 This entry represents the FAD-dependent monooxygenase responsible for the second hydroxylation step in the aerobic ubiquinone biosynthetic pathway . The sequences in this entry are restricted to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyses the final hydroxylation step. The enzyme has also been named VisB due to a mutant visible light sensitive phenotype..
Probab=99.79 E-value=2.1e-16 Score=132.89 Aligned_cols=323 Identities=19% Similarity=0.222 Sum_probs=195.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCC---CCCEEEEEECCCCCCCCCCCCCEE--CHHH-------HHHH--CC-----CHHHH
Q ss_conf 7799989768999999999808---997399997867789864027403--3367-------8886--78-----72641
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQIN---PHLSVVILEKSAEVGAHILSGAII--DPIG-------IDSL--LP-----RWRED 76 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g---~~l~VlvlEK~~~pG~~i~sG~vl--~p~a-------L~eL--~P-----d~~e~ 76 (554)
||||||||++|++.|+.|.+.+ .++||.|||+..-.... -.+. +.|+ .+.| |- =|.+.
T Consensus 1 D~iIvGGGl~G~~lAlAL~~~~G~~~~~~i~l~E~~~~~~~~---~~~~fkD~R~~AlS~GS~~~L~~lGllqPh~W~~l 77 (425)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLSGREGKLKIALIEANSPSAAK---QPGFFKDARSLALSYGSKQILEKLGLLQPHLWPKL 77 (425)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCC---CCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 978885658999999998506775576158986565744246---86423565046876899999985386331257886
Q ss_pred CCCCC-CCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHC-CCEECCCCEEEEEEECCCC-
Q ss_conf 48854-32243669999779976773654356544678826888889899999999874-9533068224347762776-
Q gi|254781024|r 77 KGHPF-HTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEAL-GVEIYCGFTATEIYYGKKG- 153 (554)
Q Consensus 77 ~g~pl-~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~e~g- 153 (554)
.+. .+++.+-++.=...-+.+.+... ......=+|||...+|-+.|.++.... -++++....+.++..++++
T Consensus 78 --~~~ratpI~~IhVSD~g~fG~~~~~~~---~~~~~aLGyVV~~~~~~~~L~~~l~~~~~~~~~~P~~~~~i~~~~~~r 152 (425)
T TIGR01984 78 --APFRATPIKDIHVSDQGHFGATELRAS---EFGLPALGYVVELADLGQALLKRLAKLRNIQLYCPARLKEIIREQDSR 152 (425)
T ss_pred --HCCCCCCCCEEEEEECCCEEEEEECHH---HCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCEECCCCCCEEEECCCCC
T ss_conf --013678775168864583001341253---628764531421789999999998625665112575321121057863
Q ss_pred -----------CEEEEEE-CCCCCCCCCCCCCCCCCEEEEEEEEEEEECC-----CCCHHHHHHHHHCCCCCCC-CHHHH
Q ss_conf -----------2014541-2432443466578756302677425786066-----4432554211224899888-89899
Q gi|254781024|r 154 -----------EALGILT-GEKGKNYDGTQGKHYIAPMLLLSKYMLVGEG-----ACGSLTRQLIERYSLMDGR-QPQKF 215 (554)
Q Consensus 154 -----------~vvgv~t-~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG-----~~s~lak~l~~~~~l~~~~-~p~~~ 215 (554)
.+..|.. ++.. ..+..++|+.+|.||| .+|.+++.+.-... .. +....
T Consensus 153 veqlPradGS~A~~~~~lt~~~~-----------rhP~~l~~~Lli~ADGGlfdd~~S~~r~~~~i~~~---~~R~y~Qt 218 (425)
T TIGR01984 153 VEQLPRADGSVAVVEVTLTDNEQ-----------RHPLQLQAKLLIAADGGLFDDANSKVRELLSIATE---EHRDYEQT 218 (425)
T ss_pred EECCCCCCCCCEEEEEEEECCCC-----------CCCEEEEEEEEEEECCCCCHHHHHHHHHHCCCCEE---EECCCCEE
T ss_conf 00056666551035788830887-----------56405553088985586331356788996389817---86062003
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEE-EECCCC--EEEEEEEECCCCCC--CCCCHHHHHHHHHHC--
Q ss_conf 88988887516566788808995043476876641257-664798--05999983266656--688988999998608--
Q gi|254781024|r 216 GLGIKELWKIKPQYHRRGLALHSIGWPLDMNTSGGGFV-YHFDDN--LVSIGFVLHLDYRN--PWISAYEELQRFKTH-- 288 (554)
Q Consensus 216 ~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~~~gggwi-y~~~d~--~~~iG~v~~ld~~~--~~~~~~~~lq~fk~h-- 288 (554)
++ +..|..+.+..+.++.=| +..|-+. -|+.|+ ..++=+++..+... ..++..+.+..+..-
T Consensus 219 Al----ian~~~~~pH~~~A~ERF-------t~~GPlALLP~~d~q~~~slvWc~~~~~a~~~~~L~~~eFl~~Lq~~nF 287 (425)
T TIGR01984 219 AL----IANVRVEQPHQGCAFERF-------TPHGPLALLPLKDNQYRLSLVWCLPKEQAERLANLSDAEFLAELQQANF 287 (425)
T ss_pred EE----EEECCCCCCCCCCEEEEE-------CCCCCEEECCCCCCCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 30----123100357576068444-------7777802346789997238897189789999866898899999865122
Q ss_pred -CCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-CCC
Q ss_conf -004565038826303513400542124874230887996123233136643522689999999999999987458-865
Q gi|254781024|r 289 -PDIRIIFTEGERLEYGARVISEGGWQSVPKLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNG-KKH 366 (554)
Q Consensus 289 -p~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g-~~~ 366 (554)
..+-++...|++- ..|..- ...++.+.++++|+||||-++.|.-|-|-+..|..-+..+|.+..+.+.+ |..
T Consensus 288 G~rlG~~~~~G~r~-----~yPL~l-~~a~~~v~~R~vliGNAAqTlHPIAGQGfNLGlRDv~~L~~~l~~~~~~~~D~G 361 (425)
T TIGR01984 288 GWRLGKITQVGERK-----AYPLKL-VIAEEQVSHRVVLIGNAAQTLHPIAGQGFNLGLRDVLTLAEVLIDAREQGKDLG 361 (425)
T ss_pred HHHHHHHHHCCCCC-----CCHHHH-HHHHHCCCCCEEEEECCHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 25420574327510-----043667-862101467279986513333014553016328999999999886764368888
Q ss_pred --CCHHHHHHHHH
Q ss_conf --30367899864
Q gi|254781024|r 367 --DDPIEIEDSWR 377 (554)
Q Consensus 367 --~~l~~Ye~~~~ 377 (554)
..|.+|.++-+
T Consensus 362 ~~~~L~~Y~~~R~ 374 (425)
T TIGR01984 362 EYALLQEYLRRRQ 374 (425)
T ss_pred CHHHHHHHHHHHH
T ss_conf 9789999998768
No 52
>KOG2614 consensus
Probab=99.79 E-value=9e-18 Score=142.41 Aligned_cols=316 Identities=20% Similarity=0.156 Sum_probs=158.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEC-----HHHHHHH-CCCHHHHCCCCCCCEEEE
Q ss_conf 6477999897689999999998089973999978677898640274033-----3678886-787264148854322436
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIID-----PIGIDSL-LPRWREDKGHPFHTVVKR 87 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~-----p~aL~eL-~Pd~~e~~g~pl~~~v~~ 87 (554)
+=+|||||||-+||++|..|+|.| ++|+|+|+.+.||.- |..+. -++|+.+ ++++....+.|+.-.|..
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G--~~v~VlE~~e~~R~~---g~si~L~~ng~~aLkai~~~e~i~~~gip~~~~v~~ 76 (420)
T KOG2614 2 EPKVVIVGGGIVGLATALALHRKG--IDVVVLESREDPRGE---GTSINLALNGWRALKAIGLKEQIREQGIPLGGRVLI 76 (420)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CEEEEEEECCCCCCC---CCCEEEHHHHHHHHHHCCCHHHHHHHCCCCCCEEEE
T ss_conf 974899888389899999998758--748998621465558---841121442899998726189999716755652643
Q ss_pred EEEEEECCCCCEECCCCCCCCCCCCCCCEE--EEHHHHHHHHHHHHHHCCCEECCCCEEE----EEEECCCCCEEEEEEC
Q ss_conf 699997799767736543565446788268--8888989999999987495330682243----4776277620145412
Q gi|254781024|r 88 DLYWFLNAQRSIQIPHFCLPDFMDNKEHYI--VSLGQVCRWLKNKAEALGVEIYCGFTAT----EIYYGKKGEALGILTG 161 (554)
Q Consensus 88 d~~~~l~~~~~~~~p~~~~p~~~~~~g~yi--v~r~~fd~~L~~~Ae~~Gvei~~g~~v~----~i~~~e~g~vvgv~t~ 161 (554)
. -.+...-.+++. .+.+.|+ +.|..+-.-|...|+..+ .|..++.-. .+..+.-+.-.
T Consensus 77 ~---~~sg~~~~~~~~-------~~~~~~i~r~~~r~ll~~lL~~a~~~~-~ikf~~~~~~~~~~~~~~~~~~~~----- 140 (420)
T KOG2614 77 H---GDSGKEVSRILY-------GEPDEYILRINRRNLLQELLAEALPTG-TIKFHSNLSCTSKDVEIETLGKKL----- 140 (420)
T ss_pred E---CCCCCEEEECCC-------CCCHHHHHHHHHHHHHHHHHHHHCCCC-EEECCCCCCCCCCCCEEEECCCCC-----
T ss_conf 1---478875674015-------883577778889999999997316887-155121100113442310003444-----
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEE-----E
Q ss_conf 43244346657875630267742578606644325542112248998888989988988887516566788808-----9
Q gi|254781024|r 162 EKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLA-----L 236 (554)
Q Consensus 162 ~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~-----~ 236 (554)
......+.+++++++|++||++|.|++.|..++..-.. ...+.++-.++.+......+ .
T Consensus 141 ----------~v~l~~g~~~~~dlligCDGa~S~Vr~~l~~~~p~~~~------~~ayrg~~~~~~~~~~~~~vf~~~~~ 204 (420)
T KOG2614 141 ----------VVHLSDGTTVKGDLLIGCDGAYSKVRKWLGFKEPRYDG------SQAYRGLGFIPNGIPFGKKVFAIYGN 204 (420)
T ss_pred ----------CEECCCCCEEEEEEEEECCCHHHHHHHHHCCCCCCCEE------EEEEEEEEECCCCCCCCCCEECCCCC
T ss_conf ----------30127874787408997575288998873546876036------78774001233788754440023488
Q ss_pred EEECCCCCCCCCCCEEEEECCC-CEEEEEEEECCCCCCCCCCHHHHHHHHHH-CCCHHHHHCCCCEECC-CCEECCCCCC
Q ss_conf 9504347687664125766479-80599998326665668898899999860-8004565038826303-5134005421
Q gi|254781024|r 237 HSIGWPLDMNTSGGGFVYHFDD-NLVSIGFVLHLDYRNPWISAYEELQRFKT-HPDIRIIFTEGERLEY-GARVISEGGW 313 (554)
Q Consensus 237 h~~g~~~~~~~~gggwiy~~~d-~~~~iG~v~~ld~~~~~~~~~~~lq~fk~-hp~i~~~l~gg~~~~y-ga~~ip~gg~ 313 (554)
+...|+..... -.+|.+-| +..+..+.--.+...-.....+..+.|.. -+.+.+.........- -....|.-..
T Consensus 205 ~~~~~~~~~~~---~~~y~~~~k~~t~t~~~~~~e~~~l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~i 281 (420)
T KOG2614 205 GLHSWPRPGFH---LIAYWFLDKSLTSTDFAPFDEPEKLKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLI 281 (420)
T ss_pred EEEECCCCCCE---EEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHCCCCCEE
T ss_conf 17975568843---898874057744212467677778756489998876776899987568477662423316976725
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 248742308879961232331366435226899999999999999874588653036789
Q gi|254781024|r 314 QSVPKLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEIE 373 (554)
Q Consensus 314 ~s~pk~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~~Ye 373 (554)
.++..-.+++|+||||.-+-|+.|.|...||+.+...|+.+.++... .+.....|.
T Consensus 282 --~~~~s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d--~s~~~~~~s 337 (420)
T KOG2614 282 --SVKCSPGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAIND--VSLAGEEYS 337 (420)
T ss_pred --EECCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC--HHCCCCCEE
T ss_conf --21168771899634313368766655432478899999999986031--200565011
No 53
>KOG1298 consensus
Probab=99.78 E-value=9.6e-17 Score=135.26 Aligned_cols=304 Identities=20% Similarity=0.216 Sum_probs=178.0
Q ss_pred CCCHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC-CCCCCCCCCCEECHH---HHHHH-CCCHHHHCCCCC
Q ss_conf 4200103647799989768999999999808997399997867-789864027403336---78886-787264148854
Q gi|254781024|r 7 LHNKDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA-EVGAHILSGAIIDPI---GIDSL-LPRWREDKGHPF 81 (554)
Q Consensus 7 ~~~re~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~-~pG~~i~sG~vl~p~---aL~eL-~Pd~~e~~g~pl 81 (554)
...|..-++||||||||-+|++.|+.|+|.|+ +|.||||.- +| +.| -|+.+.|- +|.+| +-|..|...+
T Consensus 38 ~~~~~~~~~DvIIVGAGV~GsaLa~~L~kdGR--rVhVIERDl~EP-dRi-vGEllQPGG~~~L~~LGl~Dcve~IDA-- 111 (509)
T KOG1298 38 VEARNDGAADVIIVGAGVAGSALAYALAKDGR--RVHVIERDLSEP-DRI-VGELLQPGGYLALSKLGLEDCVEGIDA-- 111 (509)
T ss_pred HHHCCCCCCCEEEECCCCHHHHHHHHHHHCCC--EEEEEECCCCCC-HHH-HHHHCCCCHHHHHHHHCHHHHHHCCCC--
T ss_conf 10046875447998886227899999850785--799996345561-678-877608506689987087877632022--
Q ss_pred CCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHC-CCEECCCCEEEEEEECCCCCEEEEEE
Q ss_conf 32243669999779976773654356544678826888889899999999874-95330682243477627762014541
Q gi|254781024|r 82 HTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEAL-GVEIYCGFTATEIYYGKKGEALGILT 160 (554)
Q Consensus 82 ~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~e~g~vvgv~t 160 (554)
..|+.-.+++ ....+++|+...+-. ...-+-...-++|.+-|.++|... .|.+..| +|.+++ +|+|.++||++
T Consensus 112 -Q~v~Gy~ifk--~gk~v~~pyP~~~f~-~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLl-ee~gvvkGV~y 185 (509)
T KOG1298 112 -QRVTGYAIFK--DGKEVDLPYPLKNFP-SDPSGRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLL-EEEGVVKGVTY 185 (509)
T ss_pred -EEEEEEEEEE--CCCEEECCCCCCCCC-CCCCCCEEECCHHHHHHHHHHHCCCCEEEEEE-EHHHHH-HCCCEEEEEEE
T ss_conf -3752269984--793553357776788-87432012236999999998724897088610-278787-31685975898
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 24324434665787563026774257860664432554211224899888898998898888751656678880899504
Q gi|254781024|r 161 GEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIG 240 (554)
Q Consensus 161 ~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g 240 (554)
...+. +..+..|..||.+||+.|.++|.|... +....-.+-+|+- --......+......++
T Consensus 186 k~k~g-----------ee~~~~ApLTvVCDGcfSnlRrsL~~~----~v~~V~S~fVG~v---l~N~~l~~p~hghvIL~ 247 (509)
T KOG1298 186 KNKEG-----------EEVEAFAPLTVVCDGCFSNLRRSLCDP----KVEEVPSYFVGLV---LKNCRLPAPNHGHVILS 247 (509)
T ss_pred ECCCC-----------CEEEEECCEEEEECCHHHHHHHHHCCC----CCCCCCHHEEEEE---ECCCCCCCCCCCEEEEC
T ss_conf 62788-----------557873555899412568889874487----6453302312445---22788899876028954
Q ss_pred CCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHH---CCCH----HH----HHCCCCEECCCCEECC
Q ss_conf 34768766412576647980599998326665668898899999860---8004----56----5038826303513400
Q gi|254781024|r 241 WPLDMNTSGGGFVYHFDDNLVSIGFVLHLDYRNPWISAYEELQRFKT---HPDI----RI----IFTEGERLEYGARVIS 309 (554)
Q Consensus 241 ~~~~~~~~gggwiy~~~d~~~~iG~v~~ld~~~~~~~~~~~lq~fk~---hp~i----~~----~l~gg~~~~yga~~ip 309 (554)
-|. -.-+|+..-+.+.+.+-+..+.. |. ...-++..|+. .|.+ ++ ...+|.. +..|
T Consensus 248 ~ps------pil~Y~ISStEvRcl~~v~g~~~-Ps-i~~gem~~~mk~~v~PqiP~~lR~~F~~av~~g~i-----rsmp 314 (509)
T KOG1298 248 KPS------PILVYQISSTEVRCLVDVPGQKL-PS-IANGEMATYMKESVAPQIPEKLRESFLEAVDEGNI-----RSMP 314 (509)
T ss_pred CCC------CEEEEEECCHHEEEEEECCCCCC-CC-CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCH-----HCCC
T ss_conf 887------37999706411389984475448-96-42136899998740767877788999988643533-----1074
Q ss_pred CCCCCCCC--CCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 54212487--423088799612323313664352268999999999999
Q gi|254781024|r 310 EGGWQSVP--KLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKI 356 (554)
Q Consensus 310 ~gg~~s~p--k~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai 356 (554)
.. ++| ..-.+|++|+|||--|-+|++|+|+..|...-.+.-.-+
T Consensus 315 n~---~mpa~~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll 360 (509)
T KOG1298 315 NS---SMPATLNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLL 360 (509)
T ss_pred CC---CCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEHHHHHHHHHHH
T ss_conf 23---49997578776599732003668734775576445799999975
No 54
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.78 E-value=1.9e-16 Score=133.22 Aligned_cols=158 Identities=23% Similarity=0.358 Sum_probs=99.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC-CCCEEC-H---------------HHHHHHC------
Q ss_conf 6477999897689999999998089973999978677898640-274033-3---------------6788867------
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL-SGAIID-P---------------IGIDSLL------ 70 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~-sG~vl~-p---------------~aL~eL~------ 70 (554)
+|||||||+|.||++||+.++++| .+|+||||...+|.... |++.+. + ..+++++
T Consensus 60 ~yDVvVVG~G~AGl~AAi~Aae~G--a~VvllEK~~~~GG~s~~s~g~~~~~~t~~q~~~G~~ds~~~~~~d~~~~~~~~ 137 (506)
T PRK06481 60 KYDIVIVGAGGAGMTAAIEAKDAG--MNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGT 137 (506)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCHHHHCCCEECCCCHHHHHHCCCCCHHHHHHHHHHHCCCC
T ss_conf 846799898899999999999889--978999689999951888558845269999997389999999999999734888
Q ss_pred ----------------CCHHHHCCCCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHC
Q ss_conf ----------------8726414885432243669999779976773654356544678826888889899999999874
Q gi|254781024|r 71 ----------------PRWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEAL 134 (554)
Q Consensus 71 ----------------Pd~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~ 134 (554)
.||.+..|.++... ........+....|.. + .-.-..+.+.|.+.+++.
T Consensus 138 ~d~~l~~~~~~~s~~~idWl~~~G~~~~~~---------~~~g~~~~~~~~~~~~----g--~~~g~~lv~~l~~~~~~~ 202 (506)
T PRK06481 138 NDKALLRYFVDNSASAIDWLDSMGIKLDNL---------TITGGMSEKRTHRPHD----G--SAVGGYLVDGLLKNVQER 202 (506)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCC---------CCCCCCCCCEEEECCC----C--CHHHHHHHHHHHHHHHHC
T ss_conf 889999999983899999999759846667---------6678877670343488----7--647999999999999877
Q ss_pred CCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHH
Q ss_conf 953306822434776277620145412432443466578756302677425786066443255421
Q gi|254781024|r 135 GVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQL 200 (554)
Q Consensus 135 Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l 200 (554)
|++++.++.++.++ +++|+|+||.....+. ....+.+|-||+|.|-.+.-.+.+
T Consensus 203 gv~i~~~t~~~~L~-~~dG~V~GV~~~~~~g-----------~~~~i~akaVILATGGf~~N~em~ 256 (506)
T PRK06481 203 KIPLFVNADVTKIT-EKDGKVTGVKVKINGK-----------ETKTISSKAVVVTTGGFGANKKMI 256 (506)
T ss_pred CCEEEECCEEEEEE-ECCCCEEEEEEEECCC-----------EEEEEECCEEEECCCCCCCCHHHH
T ss_conf 98799877832323-0589378999996898-----------499997356999778877679999
No 55
>PRK08275 putative oxidoreductase; Provisional
Probab=99.77 E-value=1.4e-14 Score=120.16 Aligned_cols=163 Identities=24% Similarity=0.317 Sum_probs=104.4
Q ss_pred CCHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC---C----EE----CHHH-HHH-------
Q ss_conf 200103647799989768999999999808997399997867789864027---4----03----3367-888-------
Q gi|254781024|r 8 HNKDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSG---A----II----DPIG-IDS------- 68 (554)
Q Consensus 8 ~~re~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG---~----vl----~p~a-L~e------- 68 (554)
||-|.+++||||||+|.||++||+.+++.+++++|+|++|+...++...+- + ++ +|.. +++
T Consensus 3 ~~~~~i~tDVLVIGsG~AGl~AAi~a~~~~~~~~V~li~K~~~~~sg~~~~~~~g~~~~~~~~~~~~e~~~~dt~~ag~g 82 (554)
T PRK08275 3 MNTQEVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDG 82 (554)
T ss_pred CCCEEEECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
T ss_conf 76358872889999719999999999986898979999799989881799998888873468999999999999985389
Q ss_pred ---------HC---C---CHHHHCCCCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEE---HHHHHHHHHHH
Q ss_conf ---------67---8---726414885432243669999779976773654356544678826888---88989999999
Q gi|254781024|r 69 ---------LL---P---RWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVS---LGQVCRWLKNK 130 (554)
Q Consensus 69 ---------L~---P---d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~---r~~fd~~L~~~ 130 (554)
|. | +|.+..|.|+.+ ++++.+... .....+.|+.. -...-+.|.++
T Consensus 83 l~d~~~v~~lv~~a~~~i~~L~~~Gv~f~r----------~~~G~~~~~------~~~~~~~~~~~~~~G~~i~~~l~~~ 146 (554)
T PRK08275 83 IVDQKAVYAYAEHSFETIQQLDRWGVKFEK----------DETGDYAVK------KVHHMGSYVLPMPEGHDIKKVLYRQ 146 (554)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCC----------CCCCCCCHH------CCCCCCCEECCCCCHHHHHHHHHHH
T ss_conf 877999999999899999999976998773----------899986001------1036776432169869999999999
Q ss_pred HHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHH
Q ss_conf 987495330682243477627762014541243244346657875630267742578606644325
Q gi|254781024|r 131 AEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSL 196 (554)
Q Consensus 131 Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~l 196 (554)
+++.|+.++..+.+++++.+++|+++|+..-+.- ++ .-..|+||.||.|.|-.+.+
T Consensus 147 ~~~~~i~i~~~~~~~~Ll~d~dGrv~Ga~~~d~~---~g-------~~~~~~AkaVVLATGG~g~~ 202 (554)
T PRK08275 147 LKRARVLITNRIMATRLLTDADGRVAGALGFDCR---TG-------EFLVIRAKAVILCCGAAGRL 202 (554)
T ss_pred HHHCCCEEEEEEEEEEEEECCCCEEEEEEEEECC---CC-------EEEEEECCCEEEECCCCCCC
T ss_conf 9865996998799999998589939999999447---98-------39999338279915764566
No 56
>pfam05834 Lycopene_cycl Lycopene cyclase protein. This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.
Probab=99.77 E-value=1.6e-15 Score=126.81 Aligned_cols=306 Identities=17% Similarity=0.119 Sum_probs=168.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC---CCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEE
Q ss_conf 779998976899999999980899739999786778---98640274033367888678726414885432243669999
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEV---GAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWF 92 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~p---G~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~ 92 (554)
||+||||||||++.|.+|++.+.+++|+|||+...+ ..|+-|=.......+++++. .... ...+
T Consensus 1 DviIiG~G~AGLsLA~~L~~~~~~~~Vllid~~~~~~~~~d~tW~fW~~~~~~~~~~~~-----------~~W~--~~~v 67 (374)
T pfam05834 1 DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPPFPNNHTWSDEFEDLGPLAPCVE-----------HSWP--GYEV 67 (374)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEECCCCCCCCCHHHHHH-----------CEEC--CEEE
T ss_conf 98999952999999999974089981999978988888998385457178777577764-----------5879--6799
Q ss_pred ECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 77997677365435654467882688888989999999987495330682243477627762014541243244346657
Q gi|254781024|r 93 LNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQG 172 (554)
Q Consensus 93 l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~ 172 (554)
...+....+ ...+...++...|.+++.++..+.++.++ ...|..+..++++ ..|.+.+
T Consensus 68 ~~~~~~~~l---------~~~~Y~~i~s~~f~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~--~~v~~~~---------- 125 (374)
T pfam05834 68 RFPDGRRKL---------IGRGYGRVSSDRLHEELLRRCAENGVIRL-NAKVASVDAEPVE--SLVVLED---------- 125 (374)
T ss_pred EECCCCEEE---------CCCCCEEEEHHHHHHHHHHHHHHCCCEEE-CCEEEEEECCCCC--EEEEECC----------
T ss_conf 928997476---------68870798889999999999865796999-1377897537870--5999269----------
Q ss_pred CCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEE
Q ss_conf 87563026774257860664432554211224899888898998898888751656678880899504347687664125
Q gi|254781024|r 173 KHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMNTSGGGF 252 (554)
Q Consensus 173 ~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~~~gggw 252 (554)
+..++|++|+++.|....-... .--|++ .|+ .++.....+++..+.. +-|.......|..|
T Consensus 126 -----g~~~~a~~V~Dsr~~~~~~~~~----------~l~Q~F-~G~--~I~t~~~~fd~~~~~l-MDfr~~q~~~g~~F 186 (374)
T pfam05834 126 -----GRTIRARLVIDARGASPSGALT----------VGYQTF-YGV--EVEVDNPPHDPDVPVI-MDARVPQPAKGYRF 186 (374)
T ss_pred -----CCEEEEEEEEECCCCCCCCCCC----------CEEEEE-EEE--EEEECCCCCCCCEEEE-EEECCCCCCCCEEE
T ss_conf -----9587444999478766778888----------614899-999--9996899788872599-98326666676189
Q ss_pred EE--ECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 76--6479805999983266656688988999998608004565038826303513400542124874230887996123
Q gi|254781024|r 253 VY--HFDDNLVSIGFVLHLDYRNPWISAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKLSFPGGSLIGCA 330 (554)
Q Consensus 253 iy--~~~d~~~~iG~v~~ld~~~~~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~g~lLvGDA 330 (554)
+| |+.++++-|-.-. . ..++..+..++-++..... -..-+...+.++.....||+...... +...++++-+|.|
T Consensus 187 ~YvLP~s~~~aLVE~T~-f-s~~~~l~~~~~~~~i~~yl-~~~gi~~~~i~~~E~GviPm~~~~~~-~~~~~~ii~iG~a 262 (374)
T pfam05834 187 LYVLPLSPTRLLIEDTC-Y-ADGPALPFDALKQRLMDYA-RALGWRILEVEREEQGVIPMTLGGDL-PATWQKVLRIGAA 262 (374)
T ss_pred EEEEECCCCEEEEEEEE-E-CCCCCCCHHHHHHHHHHHH-HHCCCCCCEEEEEEEEEECCCCCCCC-CCCCCCCCCEECC
T ss_conf 99975489859999875-3-3677899999999999999-97299852377548899888668886-5568776222324
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC--HHHH-HHHHHHHHHHH
Q ss_conf 23313664352268999999999999998745886530--3678-99864204667
Q gi|254781024|r 331 AGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDD--PIEI-EDSWRQTQIGK 383 (554)
Q Consensus 331 AG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~--l~~Y-e~~~~~s~~~~ 383 (554)
||++.|.||= ++......|+++++.+..+..... ...+ ..+|++++.++
T Consensus 263 gG~~~psTGY----sf~~~~~~a~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~fl~ 314 (374)
T pfam05834 263 AGLVHPSTGY----SVPRALALAPAIAAILRLSSISLRAWITLWARERWRQRGFFR 314 (374)
T ss_pred CCCCCCCCCH----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 3788887036----299999989999987642784322321127099999999999
No 57
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.77 E-value=1.1e-17 Score=141.93 Aligned_cols=160 Identities=21% Similarity=0.333 Sum_probs=121.7
Q ss_pred HCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHH-HHHHCCCHHHHCCCCCCCEEEEEE
Q ss_conf 1036477999897689999999998089973999978677898640274033367-888678726414885432243669
Q gi|254781024|r 11 DVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIG-IDSLLPRWREDKGHPFHTVVKRDL 89 (554)
Q Consensus 11 e~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~a-L~eL~Pd~~e~~g~pl~~~v~~d~ 89 (554)
+..|.||+|||||||||+||++||+.| ++|+++||+-.||..+-.|+.+-+.. +++ |..
T Consensus 22 ~~~e~DVvIVGaGpsGLtAAy~LAk~g--~Kv~i~E~~ls~GGG~WgGGmlf~~iVv~~-----------~a~------- 81 (257)
T PRK04176 22 DYLEVDVAIVGAGPSGLTAAYYLAKAG--LKVAVFERKLSFGGGIWGGGMLFNKIVVQE-----------EAD------- 81 (257)
T ss_pred HHHHCCEEEECCCCHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCCHHHHCCHHHHCC-----------HHH-------
T ss_conf 764068899888827999999998689--659999713468886313000133454005-----------379-------
Q ss_pred EEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCC
Q ss_conf 99977997677365435654467882688888989999999987495330682243477627762014541243244346
Q gi|254781024|r 90 YWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDG 169 (554)
Q Consensus 90 ~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~ 169 (554)
.+|.+ +.+++ .....+.|+++-..|...|+.+|.++|+.+|.++.|.++++.+++++.||.++=.-+...+
T Consensus 82 -~iLde---~gi~y-----~~~~~g~~v~d~~~~~s~L~~~a~~aGakifn~~~VEDli~r~~~rV~GvV~NWt~V~~~g 152 (257)
T PRK04176 82 -EILDE---FGIRY-----KEVEDGLYVADSVEAAAKLAAGAIDAGAKIFNGVSVEDVIIREDGRVAGVVINWTPVEMAG 152 (257)
T ss_pred -HHHHH---CCCCC-----EECCCCEEEECHHHHHHHHHHHHHHCCCEEEECCEEEEEEEECCCCEEEEEECCHHHHHHC
T ss_conf -99998---49973-----3358963995089999999999974798898230442156612881789996257756403
Q ss_pred CCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHH
Q ss_conf 6578756302677425786066443255421122
Q gi|254781024|r 170 TQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIER 203 (554)
Q Consensus 170 ~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~ 203 (554)
.+ -++..++||+||+|.|.-+.+.+.+.++
T Consensus 153 lh----vDP~~i~ak~VvdaTGHda~v~~~~~kr 182 (257)
T PRK04176 153 LH----VDPLTIEAKAVVDATGHDAEVVSVLARK 182 (257)
T ss_pred CC----CCCCEECCCEEEECCCCCHHHHHHHHHH
T ss_conf 55----5852011368998889860899999985
No 58
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.76 E-value=9.1e-15 Score=121.53 Aligned_cols=162 Identities=25% Similarity=0.364 Sum_probs=99.4
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC--CCE---E---CH--------------------
Q ss_conf 0364779998976899999999980899739999786778986402--740---3---33--------------------
Q gi|254781024|r 12 VFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILS--GAI---I---DP-------------------- 63 (554)
Q Consensus 12 ~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~s--G~v---l---~p-------------------- 63 (554)
.||+||||||+|.||++||+.+++++++++|+|+||....+++... |++ + +|
T Consensus 1 ~~e~DVLVIGsG~AGl~AA~~a~~~~~~~~V~lv~K~~~~~~~s~~a~gGi~a~~~~~~~~Ds~e~~~~Dt~k~g~~l~d 80 (575)
T PRK05945 1 MLEHDVVIVGGGLAGCRAALEIARLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPQDSWEAHAFDTVKGSDYLAD 80 (575)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 94089899996599999999999878998299997889999726888788998843799998999999999986468888
Q ss_pred -HHHHHH---CC---CHHHHCCCCCCCEEEEEEEEEECCCCCEE---CCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH
Q ss_conf -678886---78---72641488543224366999977997677---365435654467882688888989999999987
Q gi|254781024|r 64 -IGIDSL---LP---RWREDKGHPFHTVVKRDLYWFLNAQRSIQ---IPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEA 133 (554)
Q Consensus 64 -~aL~eL---~P---d~~e~~g~pl~~~v~~d~~~~l~~~~~~~---~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~ 133 (554)
..++.| -| +|.+..|.|+.+. +++.+. +.....|+...... -.-..+.+-|.+++.+
T Consensus 81 ~~lv~~l~~~~~~~v~~Le~~Gv~f~r~----------~dG~~~~~~~gGhs~~R~~~~~~---~tG~~i~~~L~~~~~~ 147 (575)
T PRK05945 81 QDAVAILTQEAPDVIIDLEHLGVLFSRL----------PDGRIAQRAFGGHSHNRTCYAAD---KTGHAILHELVNNLRR 147 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCC----------CCCCCCCEECCCCCCCCCCCCCC---CCHHHHHHHHHHHHHH
T ss_conf 9999999999999999999869977608----------89888011036710255545688---8399999999999854
Q ss_pred CCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHH
Q ss_conf 4953306822434776277620145412432443466578756302677425786066443255
Q gi|254781024|r 134 LGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLT 197 (554)
Q Consensus 134 ~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~la 197 (554)
.|++++..+.+++++. ++|+++|+..-+. +++ .-..|+||.||.|.|-.+.+-
T Consensus 148 ~gv~i~~~~~v~~Ll~-~dg~v~Ga~~~~~---~~G-------~~~~i~AkaVVlATGG~~~~~ 200 (575)
T PRK05945 148 YGVTIYDEWYVMRLIL-EENEAKGVVMYHI---ADG-------RLEVVRAKAVMFATGGYGRVF 200 (575)
T ss_pred CCCEEEEEEEEEEEEE-ECCEEEEEEEEEC---CCC-------CEEEEECCEEEECCCCCCCCC
T ss_conf 6978994178888987-0997899999971---688-------389998998998999987788
No 59
>TIGR01790 carotene-cycl lycopene cyclase family protein; InterPro: IPR010108 Carotenoids have important functions in photosynthesis, nutrition, and protection against oxidative damage, and are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. The final steps in the biosynthesis of carotenoids usually involve the cyclization of lycopene by one of two pathways: the formation of a beta ring by beta-cyclase, or an epsilon ring by epsilon-cyclase. Epsilon-cyclase adds only one ring, forming the monocyclic delta-carotene, whereas beta-cyclase introduces a ring at both ends of lycopene to form the bicyclic beta-carotene . Both enzymes show high sequence similarities, and may have evolved from the same ancestor . This family includes lycopene beta-and epsilion-cyclases, which are involved in the biosynthesis of carotenoids in bacteria and plants, and the related capsanthin capsorubin synthase (Ccs) from plants, which converts antheraxanthin or violaxanthin into capsanthin or capsorubin by a mechanism similar to lycopene cyclization.; GO: 0016705 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process.
Probab=99.74 E-value=8.9e-16 Score=128.53 Aligned_cols=294 Identities=20% Similarity=0.217 Sum_probs=173.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC--CCCCCCCCC---CEECHHH---HHHHCC-CHHHHCCCCCCCEEE
Q ss_conf 7799989768999999999808997399997867--789864027---4033367---888678-726414885432243
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA--EVGAHILSG---AIIDPIG---IDSLLP-RWREDKGHPFHTVVK 86 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~--~pG~~i~sG---~vl~p~a---L~eL~P-d~~e~~g~pl~~~v~ 86 (554)
|||||||||||+.-|..|+++-.||+|++||-.. .|+.|+ -| .=|+... |..|+- +|
T Consensus 1 D~~ViGgGpAG~aiA~~l~~a~~gL~V~~i~p~p~f~~~~~t-yg~w~~dl~~~~hawl~~l~~~~W------------- 66 (419)
T TIGR01790 1 DLIVIGGGPAGLAIALELADARPGLRVQLIEPAPPFLPGNNT-YGVWDDDLSDLGHAWLADLVEHRW------------- 66 (419)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCC-------------
T ss_conf 978874775789999999975058718986788876776874-421222232789999998841638-------------
Q ss_pred EEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHC-CCEECCCCEEEEEEECCCCCEEEEEECCCCC
Q ss_conf 669999779976773654356544678826888889899999999874-9533068224347762776201454124324
Q gi|254781024|r 87 RDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEAL-GVEIYCGFTATEIYYGKKGEALGILTGEKGK 165 (554)
Q Consensus 87 ~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~ 165 (554)
.+...++.++..+++.. +...++|..|-+-|.+++.+. |+.+..+.. .++..+ ...---|.
T Consensus 67 ~~~~~y~~~~~~~~L~~----------~Y~~~~~~~L~~~l~~~~~~~sG~~~~~~ka-~~~~~~-~~~~~~v~------ 128 (419)
T TIGR01790 67 SDAYEYRFPEEPIKLGR----------AYGSVDRAQLHEELLQKCPEGSGVLWLEAKA-IKVEAD-AVSLSLVE------ 128 (419)
T ss_pred CCEEEECCCCCCHHCCC----------CCEEECHHHHHHHHHHHHHCCCCEEEEHHHH-HHHHHH-HCCCCEEE------
T ss_conf 98068838734301056----------6500015899999998620037613301356-666544-05511144------
Q ss_pred CCCCCCCCCCCCEEEEEEEEEEEECCCCC--HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC-EEEEEECCC
Q ss_conf 43466578756302677425786066443--255421122489988889899889888875165667888-089950434
Q gi|254781024|r 166 NYDGTQGKHYIAPMLLLSKYMLVGEGACG--SLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRG-LALHSIGWP 242 (554)
Q Consensus 166 ~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s--~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G-~~~h~~g~~ 242 (554)
...|.+|.|++||+|.|... .+.... ..++.+. |. +.|+. +++...=+.+. .|++..-.+
T Consensus 129 ---------~~~g~~i~Ar~V~Da~G~~~G~l~~~~~---~~~~~g~--Q~-ayG~~--~rl~~~P~~~~~~V~MD~r~~ 191 (419)
T TIGR01790 129 ---------CAGGQRIQARLVIDARGFKPGKLVQYEK---ASLAVGY--QA-AYGVE--VRLSEPPHGPSSMVIMDYRVD 191 (419)
T ss_pred ---------CCCCEEEEEEEEEECCCCCCCCEECCCC---CCCCCEE--EE-EEEEE--EEEECCCCCCCCCEEECCCHH
T ss_conf ---------2897378400788325777651011256---6764212--13-13277--887247879998658311525
Q ss_pred C---CCCCCCCE-----EEE--ECCCCEEEEEEEECCCC-CCCCCCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCC
Q ss_conf 7---68766412-----576--64798059999832666-5668898899999860800456503882630351340054
Q gi|254781024|r 243 L---DMNTSGGG-----FVY--HFDDNLVSIGFVLHLDY-RNPWISAYEELQRFKTHPDIRIIFTEGERLEYGARVISEG 311 (554)
Q Consensus 243 ~---~~~~~ggg-----wiy--~~~d~~~~iG~v~~ld~-~~~~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~g 311 (554)
. ..+...+- |+| |++.+++.|- .-.| .++.+....+-||+..... ..-.+-.+..+-...++|++
T Consensus 192 ~~~~~~~l~~~~sripTFlYampL~~~~~f~E---eT~l~~~p~l~~~~L~~rl~~rl~-~~G~~~~~i~~eE~~~lP~~ 267 (419)
T TIGR01790 192 QLKDAPELKGYRSRIPTFLYAMPLSSDRVFIE---ETSLAARPALPRDRLKQRLLARLA-AQGWQVKEIEEEEQGLLPVN 267 (419)
T ss_pred HHCCCCCCCCCCCCCCCEEEECCCCCCEEEEE---EEEECCCCCCCHHHHHHHHHHHHH-HCCCCCCCHHHCCHHHCCCC
T ss_conf 23578532355666761566305899647888---510026899898999999999998-46882340032001111435
Q ss_pred CCCCCCC-----CC-CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 2124874-----23-08879961232331366435226899999999999999874588
Q gi|254781024|r 312 GWQSVPK-----LS-FPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGK 364 (554)
Q Consensus 312 g~~s~pk-----~~-~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~ 364 (554)
+. .|. .. .||++.+|=|||||+|.||==+-.|+..+-..|++++..|....
T Consensus 268 ~~--~p~sa~~~~q~~PGv~~~G~aAg~vHP~TGY~v~~al~~Ap~~A~~~A~~L~~~~ 324 (419)
T TIGR01790 268 LP--LPSSAYVLEQRIPGVVAFGAAAGMVHPATGYSVARALSEAPKLAAAIAQALALSS 324 (419)
T ss_pred CC--CCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 57--8852220689987033100133455775111489999987888999997413333
No 60
>PRK07121 hypothetical protein; Validated
Probab=99.74 E-value=1.4e-15 Score=127.18 Aligned_cols=171 Identities=23% Similarity=0.312 Sum_probs=103.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC-CCCCEECH----H------------H----------
Q ss_conf 3647799989768999999999808997399997867789864-02740333----6------------7----------
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI-LSGAIIDP----I------------G---------- 65 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i-~sG~vl~p----~------------a---------- 65 (554)
-||||||||+|.||++||+.+++.| ++|+||||...+|... .||+.+.. . .
T Consensus 19 ~e~DVvVVGsG~AGl~AA~~Aae~G--a~VivlEK~~~~GG~s~~sgG~~~~~~~t~~q~~~g~~Ds~e~~~~~~~~~~~ 96 (491)
T PRK07121 19 DEADVVVVGFGAAGACAAVEAAAAG--ARVLVLERAAGAGGATALSGGVIYLGGGTAVQKAAGFEDSPENMYAYLRVAVG 96 (491)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCHHHHHCCCEEECCCCHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 8769899896799999999999889--92899954899995088837772607999999973899999999999999708
Q ss_pred -------HHHHC------CCHHHHCCCCCCCEEEEEEE---------EEECCCCCEECCCCC--CCCCCC--CCCCEEEE
Q ss_conf -------88867------87264148854322436699---------997799767736543--565446--78826888
Q gi|254781024|r 66 -------IDSLL------PRWREDKGHPFHTVVKRDLY---------WFLNAQRSIQIPHFC--LPDFMD--NKEHYIVS 119 (554)
Q Consensus 66 -------L~eL~------Pd~~e~~g~pl~~~v~~d~~---------~~l~~~~~~~~p~~~--~p~~~~--~~g~yiv~ 119 (554)
++.+. -+|.+..|.++......... .+........+.... .|+... ..+. ...
T Consensus 97 ~~~d~~l~~~~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~pr~h~~~~~g~-~~~ 175 (491)
T PRK07121 97 DGVDEEKIRRYCEGSVEHFDWLEGLGVPFERSYFPEKTSYPPNDEGLYYSGNEKVWPFAEHAKPAPRGHRVQGPGD-TGG 175 (491)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCC-CCC
T ss_conf 9999999999997229999999974997455657765535677754202585223321013576676653214787-764
Q ss_pred HHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE-EEEEEECCCCCHHHH
Q ss_conf 8898999999998749533068224347762776201454124324434665787563026774-257860664432554
Q gi|254781024|r 120 LGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLS-KYMLVGEGACGSLTR 198 (554)
Q Consensus 120 r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~A-k~vI~AdG~~s~lak 198 (554)
-..+-+.|.+.+++.|++|+.++++++++.+++|+|+||.....+. ...++| |-||+|.|-.+.=..
T Consensus 176 g~~l~~~l~~~~~~~gv~i~~~t~~~~Li~d~~G~V~Gv~~~~~~~------------~~~i~A~k~VILAtGGf~~n~~ 243 (491)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYETRATRLIVDGDGRVVGVRARRFGE------------TGAIRARKGVVLAAGGFAMNRD 243 (491)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCCEEEEEEEECCC------------EEEEEECCCEEECCCCCCCCHH
T ss_conf 9999999999998579879967799999997999889999997891------------6999814727984699687699
No 61
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.74 E-value=1.6e-14 Score=119.76 Aligned_cols=162 Identities=24% Similarity=0.338 Sum_probs=98.2
Q ss_pred HCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC--CCCE---E----CH------------------
Q ss_conf 1036477999897689999999998089973999978677898640--2740---3----33------------------
Q gi|254781024|r 11 DVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL--SGAI---I----DP------------------ 63 (554)
Q Consensus 11 e~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~--sG~v---l----~p------------------ 63 (554)
|.|+|||||||+|.||++||+.+++.| ++|+|+||....+++.. +|++ + +|
T Consensus 2 ~~~~~DVlVIG~G~AGl~AAi~a~~~G--~~V~lv~K~~~~~s~s~~a~ggi~a~~~~~~~~~Ds~~~~~~Dt~~~G~~l 79 (566)
T PRK06452 2 EKLSYDAVIIGAGLAGLMAAHEIASAG--YSVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTIKGGDYL 79 (566)
T ss_pred CEEECCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 668707899997499999999998779--978999788999975368668206863579999989999999999854688
Q ss_pred ---HHHHHHC---C---CHHHHCCCCCCCEEEEEEEEEECCCCCEECC---CCCCCCCCCCCCCEEEEHHHHHHHHHHHH
Q ss_conf ---6788867---8---7264148854322436699997799767736---54356544678826888889899999999
Q gi|254781024|r 64 ---IGIDSLL---P---RWREDKGHPFHTVVKRDLYWFLNAQRSIQIP---HFCLPDFMDNKEHYIVSLGQVCRWLKNKA 131 (554)
Q Consensus 64 ---~aL~eL~---P---d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p---~~~~p~~~~~~g~yiv~r~~fd~~L~~~A 131 (554)
..++.|. | +|.+..|.|+.+. +++.+.+- ....|+...... -.-..+.+.|.+++
T Consensus 80 ~d~~~v~~l~~~~~~~i~~L~~~Gv~f~r~----------~dG~~~~~~~gghs~~R~~~~~d---~tG~~i~~~l~~~~ 146 (566)
T PRK06452 80 VDQDAAELLSYKSGEIVELLERWGALFNRQ----------PDGRVALRYFGGQTYPRTRFVGD---KTGMALLHTLYERT 146 (566)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCC----------CCCCEEEEECCCCCCCEEEECCC---CCCHHHHHHHHHHH
T ss_conf 899999999998999999999839986528----------99988443347755133574288---76689999999998
Q ss_pred HHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHH
Q ss_conf 8749533068224347762776201454124324434665787563026774257860664432554
Q gi|254781024|r 132 EALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTR 198 (554)
Q Consensus 132 e~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak 198 (554)
...+++++..+.+++++.+ +++++|+..-+... .....|+||.||.|.|-.+.+-+
T Consensus 147 ~~~~i~~~~~~~~~~Ll~~-~~~v~Gav~~d~~~----------~~~~~~~AkaVVLATGG~g~ly~ 202 (566)
T PRK06452 147 SGLNVDFYNEWFAWDLVRD-EKRVAGVVAMDMRS----------MEPFFFKAKAVVIASGGMGMLYR 202 (566)
T ss_pred HCCCCEEEEEEEEEEEEEC-CCEEEEEEEEECCC----------CEEEEEECCEEEEECCCCCEEEC
T ss_conf 6299789987899998853-98688999997689----------95999981889991785134432
No 62
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.73 E-value=5.6e-14 Score=116.01 Aligned_cols=177 Identities=19% Similarity=0.255 Sum_probs=101.9
Q ss_pred CCHHHCCCCHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC--CCCE---EC---HH--------
Q ss_conf 96010242001036477999897689999999998089973999978677898640--2740---33---36--------
Q gi|254781024|r 1 MNSCDILHNKDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL--SGAI---ID---PI-------- 64 (554)
Q Consensus 1 ~~~~~~~~~re~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~--sG~v---l~---p~-------- 64 (554)
|+-.++|.+ ||||||||+|.||++||+.+++.| ++|+||||....+++.. +|++ +. +.
T Consensus 3 ~~~~~~~d~----e~DVlVIGsG~AGL~AAi~a~~~G--~~V~li~K~~~~~s~s~~AqGGi~aa~~~~~~Ds~~~h~~D 76 (598)
T PRK09078 3 MSAYKIIDH----KYDVVVVGAGGAGLRATLGMAEAG--LRTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYD 76 (598)
T ss_pred CCCCCCCCC----CCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCCHHHHCCCCEEECCCCCCCCHHHHHHH
T ss_conf 776665566----379899995699999999998749--90799978899998546541005033378999998999999
Q ss_pred ------------HHHHHC---C---CHHHHCCCCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEE--EHHHHH
Q ss_conf ------------788867---8---72641488543224366999977997677365435654467882688--888989
Q gi|254781024|r 65 ------------GIDSLL---P---RWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIV--SLGQVC 124 (554)
Q Consensus 65 ------------aL~eL~---P---d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv--~r~~fd 124 (554)
.++.|. | +|.+..|.|+.+.. +.-.++..-+..+......++..+ ..+.- .-...-
T Consensus 77 Tl~aG~~l~d~~~v~~l~~~a~~~i~~L~~~Gv~f~r~~--dG~~~~~~~GGhs~~~~~~~~~~R--~~~~~d~tG~~i~ 152 (598)
T PRK09078 77 TVKGSDWLGDQDAIEYMCREAPAAVYELEHYGVPFSRTE--EGKIYQRPFGGMTTNYGEGPPAQR--TCAAADRTGHAIL 152 (598)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCEEE--EEEECCCCHHHHH
T ss_conf 998635768899999999989999999998599243289--988612445643201357875047--8850676099999
Q ss_pred HHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHH
Q ss_conf 9999999874953306822434776277620145412432443466578756302677425786066443255
Q gi|254781024|r 125 RWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLT 197 (554)
Q Consensus 125 ~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~la 197 (554)
+.|.+++.+.+++++..+.+.+++.+++|+++||..-+.- + ..-..|+||.||.|.|-.+.+-
T Consensus 153 ~~L~~~~~~~~i~~~~~~~~~~li~~~~G~v~Gv~~~~~~---~-------G~~~~i~AkaVILATGG~g~~y 215 (598)
T PRK09078 153 HTLYQQSLKHNAEFFIEYFALDLIMDDEGVCRGVVAWNLD---D-------GTLHRFRAHMVVLATGGYGRAY 215 (598)
T ss_pred HHHHHHHHHCCCEEEEEEEEEEEEECCCCEEEEEEEEECC---C-------CCEEEEEECEEEECCCCCCCCC
T ss_conf 9999999863987999889999998279859999999878---9-------9589997076998878777666
No 63
>pfam01946 Thi4 Thi4 family. This family includes a putative thiamine biosynthetic enzyme.
Probab=99.73 E-value=1e-16 Score=135.14 Aligned_cols=161 Identities=22% Similarity=0.302 Sum_probs=117.7
Q ss_pred HCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECH-HHHHHHCCCHHHHCCCCCCCEEEEEE
Q ss_conf 10364779998976899999999980899739999786778986402740333-67888678726414885432243669
Q gi|254781024|r 11 DVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDP-IGIDSLLPRWREDKGHPFHTVVKRDL 89 (554)
Q Consensus 11 e~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p-~aL~eL~Pd~~e~~g~pl~~~v~~d~ 89 (554)
+..|.||+|||||||||+||+.||+.| ++|+++||+-.||..+-.|+.+-+ -.+++-.-.+.++.+.
T Consensus 14 ~~~e~DV~IVGaGpsGL~aA~~LAk~g--~KV~i~E~~ls~GGG~WgGGmlfn~ivv~~~a~~iLde~gi---------- 81 (229)
T pfam01946 14 DYAESDVVIVGAGPSGLTAAYYLAKKG--LKVAIIERSLSPGGGAWGGGMLFSAMVVRKPADEFLDEFGI---------- 81 (229)
T ss_pred HHHHCCEEEECCCCHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCCCCCCCCCEEECCHHHHHHHHCCC----------
T ss_conf 764268899887817999999998789--85999964526888620201225633764138999997499----------
Q ss_pred EEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCC
Q ss_conf 99977997677365435654467882688888989999999987495330682243477627762014541243244346
Q gi|254781024|r 90 YWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDG 169 (554)
Q Consensus 90 ~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~ 169 (554)
++ ....++-|+.+-..|...|+.+|.++|+.+|..+.|.++++.+ +++.||.++=.-+.+.+
T Consensus 82 ------------~y-----~~~~~g~~v~ds~~~~s~L~s~a~~aGakifn~~~VEDli~r~-~rV~GvViNWt~V~~~g 143 (229)
T pfam01946 82 ------------RY-----EDEGDYVVVADAAEFTSTLASKALQPGVKIFNATSVEDLIIRD-NRVAGVVTNWTLVEMAG 143 (229)
T ss_pred ------------CC-----EECCCCEEEECHHHHHHHHHHHHHCCCCEEEECCEEEEEEEEC-CCEEEEEEEEEHHHHCC
T ss_conf ------------52-----7647966994499999999999767898998244888899967-92799998411444436
Q ss_pred CCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 657875630267742578606644325542112248
Q gi|254781024|r 170 TQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYS 205 (554)
Q Consensus 170 ~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~ 205 (554)
.. -++..++||+||+|.|.-+.+.+.+.+|..
T Consensus 144 ~h----vDP~~i~ak~VvDaTGHda~v~~~~~kr~~ 175 (229)
T pfam01946 144 LH----MDPLTIRAKAVVDATGHDAPFGAFCVKRIK 175 (229)
T ss_pred CC----CCCCCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 75----584211001798668897489889998721
No 64
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.72 E-value=4.7e-14 Score=116.55 Aligned_cols=163 Identities=23% Similarity=0.374 Sum_probs=98.3
Q ss_pred HCCCCCEEEECCCHHHHHHHHHHHHCC-CCCEEEEEECCCCCCCCCCC--CC---EECH----HH-----HH--------
Q ss_conf 103647799989768999999999808-99739999786778986402--74---0333----67-----88--------
Q gi|254781024|r 11 DVFEYDVVIIGAGPAGLAAAIRCKQIN-PHLSVVILEKSAEVGAHILS--GA---IIDP----IG-----ID-------- 67 (554)
Q Consensus 11 e~meyDVvIVGaGPAG~saA~~La~~g-~~l~VlvlEK~~~pG~~i~s--G~---vl~p----~a-----L~-------- 67 (554)
|.++|||||||+|.||++||+.+++.+ ++++|+|+||....|++... |+ ++.+ .. .|
T Consensus 2 ~~~~~DVlVIG~G~AGl~AA~~a~~~~~~~~~V~lv~K~~~~~s~s~~a~gG~~a~~~~~~~~Ds~~~~~~Dt~~~g~~l 81 (582)
T PRK06069 2 EVLKYDVVIVGSGLAGLRAAVAAARASGGKISIAVVSKTQAMRSHSVSAEGGTAAVLYPEKTGDSPELHAYDTVKGSDFL 81 (582)
T ss_pred CEEECCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 77870689999739999999999985389986999979899997089998779987178889999899999999853688
Q ss_pred -------HH---CC---CHHHHCCCCCCCEEEEEEEEEECCCCCEEC---CCCCCCCCCCCCCCEEEEHHHHHHHHHHHH
Q ss_conf -------86---78---726414885432243669999779976773---654356544678826888889899999999
Q gi|254781024|r 68 -------SL---LP---RWREDKGHPFHTVVKRDLYWFLNAQRSIQI---PHFCLPDFMDNKEHYIVSLGQVCRWLKNKA 131 (554)
Q Consensus 68 -------eL---~P---d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~---p~~~~p~~~~~~g~yiv~r~~fd~~L~~~A 131 (554)
.| -| +|.+..|.|+.+ ++++.+.+ .....|+...... -+-...-+-|.+++
T Consensus 82 ~d~~lv~~l~~~a~~~v~~le~~Gv~f~r----------~~~G~~~~~~~gGhs~~R~~~~~d---~tG~~i~~~l~~~~ 148 (582)
T PRK06069 82 ADQDAVEVLVREAPEEIRFLDHWGVPWSR----------DPDGRISQRPFGGMSFPRTTFAAD---KTGFYIMSTLYSRA 148 (582)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCEE----------CCCCCEEEEECCCCCCCEEECCCC---CCCHHHHHHHHHHH
T ss_conf 88999999999899999999976997106----------899988752158703450003678---75399999999999
Q ss_pred HH-CCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHH
Q ss_conf 87-4953306822434776277620145412432443466578756302677425786066443255
Q gi|254781024|r 132 EA-LGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLT 197 (554)
Q Consensus 132 e~-~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~la 197 (554)
.+ .|++++..+.+++++. ++|+++|+..-+.. ++ .-..|+||.||.|.|-.+.+-
T Consensus 149 ~~~~gv~~~~~~~vt~Ll~-~~g~v~Ga~~~d~~---~G-------~~~~i~AkaVVlATGG~g~l~ 204 (582)
T PRK06069 149 LRFDNIHFYHEHFVTSLIV-ENGVFKGVTAIDLR---RG-------EFKVFQAKAGIIATGGAGRLY 204 (582)
T ss_pred HHCCCCEEEEEEEEEEEEE-CCCEEEEEEEEECC---CC-------EEEEEEECEEEECCCCCCCCC
T ss_conf 8469948997789888874-39989999999768---98-------299998255998988675467
No 65
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.72 E-value=8.5e-14 Score=114.78 Aligned_cols=166 Identities=25% Similarity=0.311 Sum_probs=95.1
Q ss_pred CCCHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC--CCCEE------CH------HHHHHH---
Q ss_conf 42001036477999897689999999998089973999978677898640--27403------33------678886---
Q gi|254781024|r 7 LHNKDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL--SGAII------DP------IGIDSL--- 69 (554)
Q Consensus 7 ~~~re~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~--sG~vl------~p------~aL~eL--- 69 (554)
|.|=|..||||||||+|-||++||+.+++.| ++|+||||+.+.+++.. +|++. .+ +.-|.+
T Consensus 1 ~~~~~~~e~DVlVIGsG~AGL~AAi~A~~~G--~~V~lv~K~~~~~~~s~~A~GGi~a~~~~~~~~Ds~e~h~~Dtl~~G 78 (631)
T PRK07803 1 MVEVERHEYDVVVIGAGGAGLRAVIEARERG--LKVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFGDTMRGG 78 (631)
T ss_pred CCCCCCCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC
T ss_conf 9865531059899996499999999998769--98799978999986536765767644068999989999999999862
Q ss_pred --C-------------C---CHHHHCCCCCCCEEEEEEEEEECCCCCEECCC---CCCCCCCCCCCCEEEEHHHHHHHHH
Q ss_conf --7-------------8---72641488543224366999977997677365---4356544678826888889899999
Q gi|254781024|r 70 --L-------------P---RWREDKGHPFHTVVKRDLYWFLNAQRSIQIPH---FCLPDFMDNKEHYIVSLGQVCRWLK 128 (554)
Q Consensus 70 --~-------------P---d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~---~~~p~~~~~~g~yiv~r~~fd~~L~ 128 (554)
+ | .|.+..|.|+.+ ++++.+..-. ...|+..+- +. -.-..+.+.|.
T Consensus 79 ~~l~d~~~v~~l~~~a~~~v~~Le~~Gv~f~r----------~~dG~~~~~~~GGhs~~R~~~~-~d--~tG~~i~~~L~ 145 (631)
T PRK07803 79 KFLNNWRMAELHAKEAPDRVWELETYGALFDR----------TKDGRISQRNFGGHTYPRLAHV-GD--RTGLELIRTLQ 145 (631)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC----------CCCCCEEECCCCCCCCCCCCCC-CC--CCHHHHHHHHH
T ss_conf 78888999999999999999999985997544----------8998772101688656500112-78--75699999999
Q ss_pred HHHHH-------------CCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCH
Q ss_conf 99987-------------49533068224347762776201454124324434665787563026774257860664432
Q gi|254781024|r 129 NKAEA-------------LGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGS 195 (554)
Q Consensus 129 ~~Ae~-------------~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~ 195 (554)
+++.. .+++++..+.+++++. ++|+++|+..-+.- . ..-..|+||.||.|.|-.+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~i~v~~~~~v~~Ll~-d~g~v~Ga~~~~~~---~-------g~~~~~~AkaVVLATGG~g~ 214 (631)
T PRK07803 146 QKIVSLQQEDKAELGDYEARIKVFAECTITELLK-DGGRIAGAFGYWRE---S-------GRFVLFEAPAVVLATGGIGK 214 (631)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEEE-ECCEEEEEEEEECC---C-------CEEEEEECCEEEECCCCCCC
T ss_conf 9999730134444320346738993328899998-69999999999878---9-------82999962569986776763
Q ss_pred HHH
Q ss_conf 554
Q gi|254781024|r 196 LTR 198 (554)
Q Consensus 196 lak 198 (554)
+-+
T Consensus 215 ~f~ 217 (631)
T PRK07803 215 SFK 217 (631)
T ss_pred CCC
T ss_conf 564
No 66
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.72 E-value=2.7e-16 Score=132.11 Aligned_cols=157 Identities=23% Similarity=0.378 Sum_probs=118.0
Q ss_pred HHCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHH-----HHHHHCCCHHHHCCCCCCCE
Q ss_conf 0103647799989768999999999808997399997867789864027403336-----78886787264148854322
Q gi|254781024|r 10 KDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPI-----GIDSLLPRWREDKGHPFHTV 84 (554)
Q Consensus 10 re~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~-----aL~eL~Pd~~e~~g~pl~~~ 84 (554)
.+.+|-||+|||||||||+||++||+.| ++|+++||.-.+|..+--|+.+-+. ..++++ ++
T Consensus 26 ~~~~esDViIVGaGPsGLtAAyyLAk~g--~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL----~e-------- 91 (262)
T COG1635 26 LDYLESDVIIVGAGPSGLTAAYYLAKAG--LKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEIL----DE-------- 91 (262)
T ss_pred HHHHHCCEEEECCCCCHHHHHHHHHHCC--CEEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHH----HH--------
T ss_conf 8754326799876850578999998679--649999730146876334433356044425389999----98--------
Q ss_pred EEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCC
Q ss_conf 43669999779976773654356544678826888889899999999874953306822434776277620145412432
Q gi|254781024|r 85 VKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKG 164 (554)
Q Consensus 85 v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G 164 (554)
+.+++ ....++.|+.+-..|...|+.+|-++|+.|+.++.+.++++.++.++.|+.++=.-
T Consensus 92 --------------~gI~y-----e~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~ 152 (262)
T COG1635 92 --------------FGIRY-----EEEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTP 152 (262)
T ss_pred --------------HCCCC-----EECCCCEEEECHHHHHHHHHHHHHHCCCEEEECCEEEEEEEECCCCEEEEEEECCH
T ss_conf --------------19852-----44579669832799999999998730810242324778998169946899982512
Q ss_pred CCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHH
Q ss_conf 443466578756302677425786066443255421122
Q gi|254781024|r 165 KNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIER 203 (554)
Q Consensus 165 ~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~ 203 (554)
+...+ ..-++..++|++||+|.|.-..+.+.+.++
T Consensus 153 V~~~~----lhvDPl~i~a~~VvDaTGHda~v~~~~~kr 187 (262)
T COG1635 153 VQMAG----LHVDPLTIRAKAVVDATGHDAEVVSFLAKR 187 (262)
T ss_pred HHHCC----CCCCCCEEEEEEEEECCCCCHHHHHHHHHH
T ss_conf 22056----542751124789996788842899999985
No 67
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.72 E-value=3.1e-14 Score=117.81 Aligned_cols=174 Identities=20% Similarity=0.208 Sum_probs=101.6
Q ss_pred HCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC--CCCE---E---------CH--HHHHHH-----
Q ss_conf 1036477999897689999999998089973999978677898640--2740---3---------33--678886-----
Q gi|254781024|r 11 DVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL--SGAI---I---------DP--IGIDSL----- 69 (554)
Q Consensus 11 e~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~--sG~v---l---------~p--~aL~eL----- 69 (554)
+.++|||||||+|.||++||+.+++.| ++|+||+|....|++.. +|++ + ++ +.-|.+
T Consensus 2 ~~i~tDVLVIG~G~AGL~AAl~a~e~G--~~V~vl~K~~~~~snS~~AqGGi~aalg~~~~~~~Ds~e~h~~DTlkgg~~ 79 (657)
T PRK08626 2 KIIYTDSLVIGAGLAGLRVAIAAKERG--LDTIVLSLVPAKRSHSAAAQGGMQASLGNAVKGEGDNEDVHFADTVKGSDW 79 (657)
T ss_pred CEEECCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 737516899996599999999999759--957999688899986477533776630346789997989999999986168
Q ss_pred -------------CC---CHHHHCCCCCCCEEEEEEEEEECCCCCEECCCCCCCC---CCCCCCCEEEEH---------H
Q ss_conf -------------78---7264148854322436699997799767736543565---446788268888---------8
Q gi|254781024|r 70 -------------LP---RWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPD---FMDNKEHYIVSL---------G 121 (554)
Q Consensus 70 -------------~P---d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~---~~~~~g~yiv~r---------~ 121 (554)
-| +|.+..|.|+.+........... ...+.+....... ..++.|+....| .
T Consensus 80 ~~d~~~v~~l~~~ap~~i~~L~~~Gvpf~r~~~G~~~~~~~-~~~~~~~~~~~~~g~i~~r~fGG~s~~R~~~~~d~tG~ 158 (657)
T PRK08626 80 GCDQEVARMFAHTAPKAVRELANWGVPWTRVTAGPRTVVVN-AQKVTIEEAEEAHGLINARDFGGTKKWRTCYTADGTGH 158 (657)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCHH
T ss_conf 88899999999989999999997599842266776321135-43222100001456211002588201124523888779
Q ss_pred HHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHH
Q ss_conf 98999999998749533068224347762776201454124324434665787563026774257860664432554
Q gi|254781024|r 122 QVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTR 198 (554)
Q Consensus 122 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak 198 (554)
.+-..|.+++.+.|++++..+.+.+++. ++++++|+...+.- ++ .-..+.||.||.|.|-.+.+-+
T Consensus 159 ~i~~~L~~~~~~~gV~i~~~~~~~~Li~-d~g~~~Gav~~d~~---~G-------~~~~~~AkaVILATGG~g~ly~ 224 (657)
T PRK08626 159 TLLYAVDNEAISLGVPVHDRKEALALIH-DGKRCHGAVARCLI---TG-------ELRAYVAKGTLIATGGYGRIYK 224 (657)
T ss_pred HHHHHHHHHHHHCCCEEECCEEEEEEEE-ECCEEEEEEEEECC---CC-------CEEEEEECCEEEECCCCCCEEE
T ss_conf 9999999999975994990629999999-89999999999657---89-------6889863418993266662355
No 68
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.72 E-value=1.2e-13 Score=113.69 Aligned_cols=164 Identities=19% Similarity=0.292 Sum_probs=99.8
Q ss_pred HCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC--CCCE---E---------------------CHH
Q ss_conf 1036477999897689999999998089973999978677898640--2740---3---------------------336
Q gi|254781024|r 11 DVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL--SGAI---I---------------------DPI 64 (554)
Q Consensus 11 e~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~--sG~v---l---------------------~p~ 64 (554)
|+||+||||||+|.||++||+.+++.+.+++|+|+||....+++.. .|+. + ++.
T Consensus 1 ~t~~~DVlVIGsG~AGl~AAi~a~~~~~g~~V~lv~K~~~~~s~s~~a~GG~~a~~~~~Ds~e~~~~Dt~~~G~~l~d~~ 80 (582)
T PRK09231 1 QTFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQD 80 (582)
T ss_pred CCEECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHEEECCCCCCHHHHHHHHHHHHCCCCCHH
T ss_conf 91355689999669999999999986899859999789989986187761250447999999999999999706788899
Q ss_pred HHHHHC---C---CHHHHCCCCCCCEEEEEEEEEECCCCCEECCC---CCCCCCCCCCCCEEEEHHHHHHHHHHHHHH-C
Q ss_conf 788867---8---72641488543224366999977997677365---435654467882688888989999999987-4
Q gi|254781024|r 65 GIDSLL---P---RWREDKGHPFHTVVKRDLYWFLNAQRSIQIPH---FCLPDFMDNKEHYIVSLGQVCRWLKNKAEA-L 134 (554)
Q Consensus 65 aL~eL~---P---d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~---~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~-~ 134 (554)
.++.|. | +|.+..|.|+.+. +++.+.+.. ...++...... -.-..+-+-|.+++.+ .
T Consensus 81 lv~~l~~~~~~~i~~L~~~Gv~f~r~----------~~G~~~~~~~gGhs~~R~~~~~d---~tG~~i~~~l~~~~~~~~ 147 (582)
T PRK09231 81 VVEYFVHHCPTEMTQLEQWGCPWSRK----------PDGSVNVRRFGGMKIERTWFAAD---KTGFHMLHTLFQTSLQYP 147 (582)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEC----------CCCCEEEEECCCCCCCEEEECCC---CCHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999849982157----------99877543048710461233589---866999999999998569
Q ss_pred CCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHH
Q ss_conf 9533068224347762776201454124324434665787563026774257860664432554
Q gi|254781024|r 135 GVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTR 198 (554)
Q Consensus 135 Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak 198 (554)
+++++..+.+.+++. ++|+++|+..-+.. + ..-..|+||.||.|.|-.+.+-+
T Consensus 148 ~i~~~~~~~~~~Ll~-~dg~v~Ga~~~d~~---~-------G~~~~i~AkaVILATGG~g~l~~ 200 (582)
T PRK09231 148 QIQRFDEHFVLDILV-DDGHVRGLVAMNMM---E-------GTLVQIRANAVVMATGGAGRVYR 200 (582)
T ss_pred CCEEEEEEEEEEEEE-CCCEEEEEEEEECC---C-------CCEEEEEECEEEECCCCCCCCCC
T ss_conf 978997599988896-39808999999889---9-------96899973769986788765535
No 69
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.71 E-value=7.2e-14 Score=115.30 Aligned_cols=167 Identities=20% Similarity=0.203 Sum_probs=99.4
Q ss_pred CCHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC---CC---CEECHH-H----HHHHC------
Q ss_conf 2001036477999897689999999998089973999978677898640---27---403336-7----88867------
Q gi|254781024|r 8 HNKDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL---SG---AIIDPI-G----IDSLL------ 70 (554)
Q Consensus 8 ~~re~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~---sG---~vl~p~-a----L~eL~------ 70 (554)
|+.|+|++||||||+|.||++||+.+++.| +|+|++|+...++... .| +++++. . +++.+
T Consensus 1 ~~~~~i~TDVlVIGsG~AGl~AA~~a~~~g---~vvlv~k~~~~~sG~s~~a~gg~~a~~~~~Ds~e~~~~Dt~~~g~~l 77 (539)
T PRK06263 1 MEDETMITDVLIIGSGGAGARAAIEASQKG---TVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYL 77 (539)
T ss_pred CCCCEEECCEEEECCHHHHHHHHHHHHHCC---CEEEEECCCCCCCCCHHHHHHHHEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 986189649899995399999999998259---97999778989998478886677150899999999999999852688
Q ss_pred --C--------------CHHHHCCCCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHC
Q ss_conf --8--------------726414885432243669999779976773654356544678826888889899999999874
Q gi|254781024|r 71 --P--------------RWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEAL 134 (554)
Q Consensus 71 --P--------------d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~ 134 (554)
| +|.+..|.|+.+. ++....+...+.-+. |+.... +. -.-..+.+-|.+++.+.
T Consensus 78 ~d~~lv~~l~~~a~~~v~~L~~~G~~f~~~--~~g~~~~~~~gg~s~-----~R~~~~-~~--~tG~~i~~~L~~~~~~~ 147 (539)
T PRK06263 78 NDPKLVEILVKEAPKRLKDLEKFGAVFDRT--EDGEIAQRPFGGQSF-----NRTCYA-GD--RTGHEMMMGLMEYLIKE 147 (539)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCC--CCCCEEEEECCCCCC-----CCCCCC-CC--CCCHHHHHHHHHHHHHC
T ss_conf 889999999999999999999839985127--998673100478544-----432235-77--66199999999998616
Q ss_pred CCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHH
Q ss_conf 953306822434776277620145412432443466578756302677425786066443255
Q gi|254781024|r 135 GVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLT 197 (554)
Q Consensus 135 Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~la 197 (554)
|++++..+.+++++.+++|+++|+..-+.- + ..-..|+|+-||.|.|-.+.+-
T Consensus 148 gv~i~~~~~~~~Ll~~~~g~v~Ga~~~~~~---~-------g~~~~i~AkaVILATGG~~~ly 200 (539)
T PRK06263 148 RIKILEEVMAIKLLVDELGKVFGAVFLDLR---N-------GDIVPIYAKSTILATGGAGQLY 200 (539)
T ss_pred CCEEEEEEEEEEEEECCCCEEEEEEEEECC---C-------CEEEEEEECEEEECCCCCCCCC
T ss_conf 977995159999998179969999999778---9-------8299996056998989876568
No 70
>PTZ00139 succinate dehydrogenase (flavoprotein) subunit; Provisional
Probab=99.71 E-value=1.7e-13 Score=112.75 Aligned_cols=167 Identities=19% Similarity=0.258 Sum_probs=102.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC--CCC---EEC-----------------------HHH
Q ss_conf 6477999897689999999998089973999978677898640--274---033-----------------------367
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL--SGA---IID-----------------------PIG 65 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~--sG~---vl~-----------------------p~a 65 (554)
+|||||||+|-||++||+.+++.| ++|+||||....|++.. +|+ ++. +..
T Consensus 34 ~yDVlVIGsG~AGL~AAi~a~~~G--~~V~lleK~~~~~snS~~AqGGInaa~~~~~eDs~e~h~~DTlkaG~~l~d~~l 111 (622)
T PTZ00139 34 TYDAVVVGAGGAGLRAALGLSESG--YKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDA 111 (622)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHH
T ss_conf 658799996699999999999769--908999788999974899987787406789999989999999986268779999
Q ss_pred HHHHC---C---CHHHHCCCCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCC-CCCEEE--EHHHHHHHHHHHHHHCCC
Q ss_conf 88867---8---72641488543224366999977997677365435654467-882688--888989999999987495
Q gi|254781024|r 66 IDSLL---P---RWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDN-KEHYIV--SLGQVCRWLKNKAEALGV 136 (554)
Q Consensus 66 L~eL~---P---d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~-~g~yiv--~r~~fd~~L~~~Ae~~Gv 136 (554)
++.|. | +|.+..|.|+.+. .+...++...+.-+++.. . ..+. ...+.- .-..+-+.|..++.+.++
T Consensus 112 v~~l~~~a~~~V~~Le~~Gv~f~r~--~~G~~~~r~~Gg~s~~~~--~-g~~~~R~~~~~d~tG~~i~~~L~~~~~~~~i 186 (622)
T PTZ00139 112 IHYMCKEAPCAVSELESYGLPFSRT--KDGKIYQRAFGGQSLKFG--K-GGQAYRCCAAADRTGHAMLHTLYGQSLQYNC 186 (622)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEC--CCCCEEECCCCCEECCCC--C-CCCCEEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 9999998999999999779972257--998781215677203466--7-8741578875786199999999999986599
Q ss_pred EECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHH
Q ss_conf 3306822434776277620145412432443466578756302677425786066443255
Q gi|254781024|r 137 EIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLT 197 (554)
Q Consensus 137 ei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~la 197 (554)
.++..+.+.+++.+++|+++|+..-+.- ++ .-..|+||.||.|.|-.+.+-
T Consensus 187 ~~~~~~~~~~ll~~~~g~v~Gv~~~~~~---~g-------~~~~i~AkaVVLATGG~g~~~ 237 (622)
T PTZ00139 187 NFFIEYFCLDLIMDEDGCCRGVVAMSIA---DG-------TIHRFRSKYTVIATGGYGRAY 237 (622)
T ss_pred EEEEEEEEEEEEECCCCEEEEEEEEECC---CC-------EEEEEEEEEEEECCCCCCCCE
T ss_conf 7999889999997589959999999778---99-------099997136998778754334
No 71
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.70 E-value=8.4e-13 Score=107.87 Aligned_cols=315 Identities=17% Similarity=0.208 Sum_probs=154.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC--CCE---EC-------H--HHHHHH----------
Q ss_conf 64779998976899999999980899739999786778986402--740---33-------3--678886----------
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILS--GAI---ID-------P--IGIDSL---------- 69 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~s--G~v---l~-------p--~aL~eL---------- 69 (554)
++||||||+|.||++||+.+++.| .+|+||+|....+++..| |++ +. | +.-|.+
T Consensus 3 ~~DVlVIGsG~AGl~AAi~a~~~G--~~V~v~~k~~~~~~~S~~a~gGi~aa~~~~~~~Ds~~~h~~Dt~~aG~~l~d~~ 80 (589)
T PRK08641 3 KKKVIVVGGGLAGLMATIKAAEAG--VHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTIYGGDFLANQP 80 (589)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHH
T ss_conf 687899898699999999998759--977999777889883067787799860479999898999999999557878899
Q ss_pred --------CC---CHHHHCCCCCCCEEEEEEEEEECCCCCEECCCC---CCCCCCCCCCCEEEEHHHHHHHHHHHHHHC-
Q ss_conf --------78---726414885432243669999779976773654---356544678826888889899999999874-
Q gi|254781024|r 70 --------LP---RWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHF---CLPDFMDNKEHYIVSLGQVCRWLKNKAEAL- 134 (554)
Q Consensus 70 --------~P---d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~---~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~- 134 (554)
-| +|.+..|.|+.+ ++++.+.+..+ ..++.... +. ..-..+-+.|.+++.+.
T Consensus 81 ~v~~l~~~a~~~i~~Le~~Gv~f~r----------~~~g~~~~~~~GGhs~~R~~~~-~~--~tG~~i~~~L~~~~~~~~ 147 (589)
T PRK08641 81 PVKAMCEAAPGIIHLLDRMGVMFNR----------TPEGLLDFRRFGGTLHHRTAFA-GA--TTGQQLLYALDEQVRRYE 147 (589)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEE----------CCCCCEEECCCCCCCCCCCCCC-CC--CCHHHHHHHHHHHHHHCC
T ss_conf 9999999899999999983980225----------7998870012577036745357-88--638999999999998345
Q ss_pred ---CCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCC
Q ss_conf ---95330682243477627762014541243244346657875630267742578606644325542112248998888
Q gi|254781024|r 135 ---GVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQ 211 (554)
Q Consensus 135 ---Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~ 211 (554)
.++++....+.+++.+++|+++|+..-+.-. .+-..|+||.||.|.|-.+.+-..- .+ .
T Consensus 148 ~~~~i~~~~~~~~~~ll~~~~g~v~Gv~~~d~~~----------g~~~~i~AkaVILATGG~g~ly~~t-------TN-~ 209 (589)
T PRK08641 148 VAGLVTKYEGWEFLGAVKDDEGRCRGIVAQNLFT----------MEIESFGADAVIMATGGPGIIFGKS-------TN-S 209 (589)
T ss_pred CCCCEEEEECCEEEEEEECCCCEEEEEEEEECCC----------CEEEEEECCEEEEECCCCCCCCCCC-------CC-C
T ss_conf 6576599974378899982799699999998889----------8099995156999468887554466-------79-9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEE-EEEECCCCC------C-CC-CCCEEEEECCCCE---------------EE-----
Q ss_conf 989988988887516566788808-995043476------8-76-6412576647980---------------59-----
Q gi|254781024|r 212 PQKFGLGIKELWKIKPQYHRRGLA-LHSIGWPLD------M-NT-SGGGFVYHFDDNL---------------VS----- 262 (554)
Q Consensus 212 p~~~~~gvke~~ei~~~~~~~G~~-~h~~g~~~~------~-~~-~gggwiy~~~d~~---------------~~----- 262 (554)
+...+-|+.-.++.--...+--++ .|-.+.+.. . .. .-|+.++...++. +.
T Consensus 210 ~~~TGdG~amA~raGA~l~dmEfiQfhPT~l~~~~~~~Lisea~RGeGg~ll~~~~g~r~~f~~~~~~~~~~la~Rdvva 289 (589)
T PRK08641 210 TINTGSAASRVYQQGAYYANGEFIQIHPTAIPGDDKLRLMSESARGEGGRVWTYKDGKPWYFLEEKYPAYGNLVPRDIAT 289 (589)
T ss_pred CCCCCHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCEECCHHHCCCCCEEEECCCCCCCHHHHHCCHHHCCCCCCHHHH
T ss_conf 98751999999984988158461456520544888742355755278977830589961101110260010126401999
Q ss_pred ---------EEE------EECCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCC------EECCCCEECCCCCCCC--CCCC
Q ss_conf ---------999------8326665668898899999860800456503882------6303513400542124--8742
Q gi|254781024|r 263 ---------IGF------VLHLDYRNPWISAYEELQRFKTHPDIRIIFTEGE------RLEYGARVISEGGWQS--VPKL 319 (554)
Q Consensus 263 ---------iG~------v~~ld~~~~~~~~~~~lq~fk~hp~i~~~l~gg~------~~~yga~~ip~gg~~s--~pk~ 319 (554)
-+. .+.+|.. +.++....++|..-..+...+.+-. .+.-.+| ..+||+.. .-+.
T Consensus 290 rai~~~~~~~~~~~~g~~~v~lD~~--~~~~~~~~~~~~~~~~~~~~~~g~D~~~~pi~V~P~~H-y~mGGi~iD~~~~T 366 (589)
T PRK08641 290 REIFDVCVEQKLGINGENMVYLDLS--HKDPKELDIKLGGIIEIYEKFTGDDPRKVPMKIFPAVH-YSMGGLWVDYDQMT 366 (589)
T ss_pred HHHHHHHHHHCCCCCCCCEEEEECC--CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCE-EECCCEEECCCCCC
T ss_conf 9999999983578788774885411--28989999872558999999709996457614543410-10587678898862
Q ss_pred CCCCEEEECCCCCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 3088799612323313664---35226899999999999999874588
Q gi|254781024|r 320 SFPGGSLIGCAAGFVNLLR---IKGSHNAIISGMLAAEKIVERLSNGK 364 (554)
Q Consensus 320 ~~~g~lLvGDAAG~vnP~~---g~GI~~Am~SG~lAAEai~eal~~g~ 364 (554)
.-||+.-+|++||-++-.+ +..+--++..|++|++.+++.+..-+
T Consensus 367 ~IpGLyAaGE~a~g~HGaNRLggNSLle~~VfG~~Ag~~Aa~~~~~~~ 414 (589)
T PRK08641 367 NIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAIRYIKGLG 414 (589)
T ss_pred CCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 368727754445566775544310499999989999999999997468
No 72
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.70 E-value=5.3e-14 Score=116.21 Aligned_cols=182 Identities=19% Similarity=0.275 Sum_probs=92.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC--CC-CCCCCCCEE-C--HHH---------HHHHCCCHHHHC
Q ss_conf 36477999897689999999998089973999978677--89-864027403-3--367---------888678726414
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE--VG-AHILSGAII-D--PIG---------IDSLLPRWREDK 77 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~--pG-~~i~sG~vl-~--p~a---------L~eL~Pd~~e~~ 77 (554)
|||||||||+|-||++||+.++++| .||+||||... +| .-+.|++.+ - ... .+.++-||....
T Consensus 1 ~e~DVvVVGsG~AGLsAAi~Aae~G--akVivlEKe~~~~~GG~s~~s~G~~~~~~t~~Qk~~Gi~DS~e~~~~d~~~~a 78 (549)
T PRK12834 1 MDADVIVVGAGLAGLVAAAELADAG--KRVLLLDQENEANLGGQAFWSFGGLFLVDSPEQRRLGIKDSLELALQDWLGSA 78 (549)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCHHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 9999899896789999999999879--92799966888898846776177876689999998489999999999999752
Q ss_pred CC--CC--------CCEE---EEEEEEEECCCCCEEC-C---------------CCCCCCCCC--CCCCEEEEHHHHHHH
Q ss_conf 88--54--------3224---3669999779976773-6---------------543565446--788268888898999
Q gi|254781024|r 78 GH--PF--------HTVV---KRDLYWFLNAQRSIQI-P---------------HFCLPDFMD--NKEHYIVSLGQVCRW 126 (554)
Q Consensus 78 g~--pl--------~~~v---~~d~~~~l~~~~~~~~-p---------------~~~~p~~~~--~~g~yiv~r~~fd~~ 126 (554)
+. +. +..+ ..+.+.+|.+. .+.+ | ....|+... ..+.-+ ...|.+.
T Consensus 79 ~~~~~~d~~~~~~~~~~~~~~~~e~~~wL~~~-Gv~f~~~~~~~~~~~~~~~g~g~s~pr~h~~~~~G~~~--~~~~~~~ 155 (549)
T PRK12834 79 GFDRPEDHWPRQWAEAYVEFAAGEKRSWLHSL-GLRFFPVVGWAERGGGDAGGHGNSVPRFHITWGTGPGV--VEPFVRR 155 (549)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHC-CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH--HHHHHHH
T ss_conf 78985136789999999875111178999966-98621034411247755678888777735567877169--9999999
Q ss_pred HHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCC--CCCCCCCCCCC-CCEEEEEEEEEEEECCCCCHHHHHH
Q ss_conf 99999874953306822434776277620145412432--44346657875-6302677425786066443255421
Q gi|254781024|r 127 LKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKG--KNYDGTQGKHY-IAPMLLLSKYMLVGEGACGSLTRQL 200 (554)
Q Consensus 127 L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G--~~k~~~~~~~~-~~g~~i~Ak~vI~AdG~~s~lak~l 200 (554)
+.+.+++.+++++.+++|++++. ++|+|+||+..... ....+...... ....+++||-||+|.|-.+.=...+
T Consensus 156 ~~~~~~~~~v~~~~~t~a~~Li~-~~g~V~GV~~~~~~~~~~~~g~~~~~~~~g~~~i~AkaVILATGGf~~N~em~ 231 (549)
T PRK12834 156 VREAAARGLVTFRFRHRVDELIV-TNGAVTGVRGTVLEPSDAPRGAASSRTVVGEFEFRAQAVIVTSGGIGGNHELV 231 (549)
T ss_pred HHHHHHCCCEEEEECCEEEEEEE-ECCEEEEEEEEECCCCCHHCCCCCCCCCCCEEEEECCEEEECCCCCCCCHHHH
T ss_conf 99874169708995688579997-59989988866525662110443333344407997896999089876499999
No 73
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6; InterPro: IPR000689 Ubiquinone (Q) functions as an electron carrier in the respiratory chain in mitochondria. Q biosynthesis involves a series of enzymatic steps, which are catalysed by the enzymes COQ1-COQ8 in Saccharomyces cerevisiae. COQ6, or ubiquinone biosynthesis monooxygenase, is a flavin-dependent enzyme localised to the matrix side of the inner mitochondrial membrane that is required for one or more steps in Q biosynthesis , .; GO: 0004497 monooxygenase activity.
Probab=99.69 E-value=4.5e-15 Score=123.68 Aligned_cols=348 Identities=15% Similarity=0.146 Sum_probs=188.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHC--CCCCEEEEEECCCCCCCC-----CCCC------CEECHHHHHHH--CCCHHHHCCC
Q ss_conf 4779998976899999999980--899739999786778986-----4027------40333678886--7872641488
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQI--NPHLSVVILEKSAEVGAH-----ILSG------AIIDPIGIDSL--LPRWREDKGH 79 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~--g~~l~VlvlEK~~~pG~~-----i~sG------~vl~p~aL~eL--~Pd~~e~~g~ 79 (554)
||||||||||.|++.|..|+.. =+++||+|||-...|--+ ...| -.++|+.+.=| +.-|......
T Consensus 1 ~DvvIvGGG~VG~alAaaL~~~~~~~dlkv~Lld~~d~p~l~s~~y~~~~~~y~NRvssitp~si~~f~~~GAWd~i~~~ 80 (481)
T TIGR01989 1 FDVVIVGGGLVGLALAAALGNNPLLKDLKVLLLDAVDAPKLKSRKYEKPDGPYSNRVSSITPASIEFFKKIGAWDHIESD 80 (481)
T ss_pred CCEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHCCHHHHHHHH
T ss_conf 92898888578999999973187320230678652348234211015788887763585375079998534835898851
Q ss_pred CCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCC---CEECCCCEEEEEEECCC----
Q ss_conf 54322436699997799767736543565446788268888898999999998749---53306822434776277----
Q gi|254781024|r 80 PFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALG---VEIYCGFTATEIYYGKK---- 152 (554)
Q Consensus 80 pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~G---vei~~g~~v~~i~~~e~---- 152 (554)
.. .++.+-.+|=-..+..+.+... .....=+|+|.=..+..-|.++.++.- +++....++..+-+-..
T Consensus 81 R~-~~f~~~~V~D~~s~a~i~f~~~----~~~e~~aciiEN~~i~~sL~~~l~~~~~~~~~~~~~~~~~~~~ip~~srqa 155 (481)
T TIGR01989 81 RI-KPFKRMQVWDGCSKALIEFDRD----NVKEDMACIIENDVIQASLYNRLKEYKSDNVKVLYKAKLISVTIPKKSRQA 155 (481)
T ss_pred HH-HHHCCEEEEEECCCEEEEECCC----CCCCCCEEHHHHHHHHHHHHHHHHHHCCCCEEECCHHCEEEECCCCCCCCC
T ss_conf 14-2017189887247403444236----888643011356899999999998725882331001010231155101457
Q ss_pred CCEEEEEECCC--CCCCCCCCCCCCCCE---------------EEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 62014541243--244346657875630---------------2677425786066443255421122489988889899
Q gi|254781024|r 153 GEALGILTGEK--GKNYDGTQGKHYIAP---------------MLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKF 215 (554)
Q Consensus 153 g~vvgv~t~~~--G~~k~~~~~~~~~~g---------------~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~ 215 (554)
-....+..+.. -.+.....+-..+.| .+|..|++|||||.+|.|+|...-.. .-++.+ +
T Consensus 156 PtreaissG~p~~~~~~~~~~~i~L~dGdvietsllvrinflk~~l~~~LliGADG~NS~VR~~~~i~~-~gwNY~--~- 231 (481)
T TIGR01989 156 PTREAISSGSPFEENDNSNWVHITLSDGDVIETSLLVRINFLKETLKTKLLIGADGVNSKVRKAANIDV-TGWNYD--Q- 231 (481)
T ss_pred CCCHHHCCCCCCCCCCCCCCCEEEECCCCEEHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCEEECCCC-CCCCCC--C-
T ss_conf 530121168887655667642577068866314555565554320003357743278772233623675-453357--6-
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCEEEEEEEECCC------------------------C
Q ss_conf 8898888751656678880899504347687664125766479805999983266------------------------6
Q gi|254781024|r 216 GLGIKELWKIKPQYHRRGLALHSIGWPLDMNTSGGGFVYHFDDNLVSIGFVLHLD------------------------Y 271 (554)
Q Consensus 216 ~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~~~gggwiy~~~d~~~~iG~v~~ld------------------------~ 271 (554)
.|+-...++.+.......+|-= .++.++ =+.+ |+.|+.+++-+-+.-. |
T Consensus 232 -~avVatl~l~~~~~~n~~AWQR---FLP~GP--iAlL-Pl~D~~s~lVWSts~e~a~~L~~Lp~e~FV~~lN~Af~l~~ 304 (481)
T TIGR01989 232 -SAVVATLKLEEDATENEVAWQR---FLPTGP--IALL-PLSDNLSTLVWSTSPEEAKRLKSLPPEEFVDALNAAFRLDY 304 (481)
T ss_pred -CEEEEEEEECCCCCCCCEEEEC---CCCCCC--EEEC-CCCCCCCCCEEECCHHHHHHHCCCCCHHHHHHHHHHHCCCC
T ss_conf -4268888505678888735413---378766--2445-76653365412167799998425883578999998741788
Q ss_pred CC-CCC---------CHHHHHHHHHHC-CCHHHHHCCCCEEC--C----------CCEECCCCCCCCCCCCCCCCEEEEC
Q ss_conf 56-688---------988999998608-00456503882630--3----------5134005421248742308879961
Q gi|254781024|r 272 RN-PWI---------SAYEELQRFKTH-PDIRIIFTEGERLE--Y----------GARVISEGGWQSVPKLSFPGGSLIG 328 (554)
Q Consensus 272 ~~-~~~---------~~~~~lq~fk~h-p~i~~~l~gg~~~~--y----------ga~~ip~gg~~s~pk~~~~g~lLvG 328 (554)
.+ ++. +...+...+... +.|...|+..+... + ....-|.+--+ ....+.+|++|||
T Consensus 305 ~d~~~~~~~d~~Gsm~~~~L~~~~~~~~~~~yatL~~~~~~~~~~PP~v~~v~~ksRa~FPL~L~H-a~~Yv~~R~ALvG 383 (481)
T TIGR01989 305 SDLNYLYLVDEAGSMDVEKLNEDIGFRTEEIYATLKVGRKSEVQVPPRVIGVVDKSRAAFPLGLGH-ADEYVTERVALVG 383 (481)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCEECCCEEEEEECCCCCCCCCCCCC-CHHHHCCCCCEEC
T ss_conf 888731100022562089999741353014201110353134016885899823750368742122-0777528962622
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CC--CCHHHHHHHHHHH
Q ss_conf 232331366435226899999999999999874588-65--3036789986420
Q gi|254781024|r 329 CAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGK-KH--DDPIEIEDSWRQT 379 (554)
Q Consensus 329 DAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~-~~--~~l~~Ye~~~~~s 379 (554)
|||.-|+|+-|-|+++..-.-...++++.+|...|. .. ..|..|+..-+.+
T Consensus 384 DAAH~vHPLAGQGvNlG~~Dv~~L~~~L~~a~~~G~DiGs~~~L~~Y~~~r~~~ 437 (481)
T TIGR01989 384 DAAHRVHPLAGQGVNLGFSDVESLVKALSKAVKEGADIGSVSSLKPYERERQAK 437 (481)
T ss_pred CHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
T ss_conf 301067873345101117899999999999986055524145205889878662
No 74
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.69 E-value=9.2e-13 Score=107.60 Aligned_cols=168 Identities=20% Similarity=0.253 Sum_probs=97.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC--CCCE---E-----------------------CHHH
Q ss_conf 6477999897689999999998089973999978677898640--2740---3-----------------------3367
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL--SGAI---I-----------------------DPIG 65 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~--sG~v---l-----------------------~p~a 65 (554)
||||||||+|.||++||+.+++.| .+|+||||....|++.. +|++ + ++..
T Consensus 7 e~DVlVIGsG~AGl~AAi~a~~~g--~~V~lv~K~~~~~s~s~~A~GGi~~a~~~~~~Ds~e~h~~Dtlkag~~l~d~~~ 84 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSG--QSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDA 84 (588)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCHHHHHHHEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
T ss_conf 679899995499999999998749--938999788989986166631020503799999999999999996378788999
Q ss_pred HHHHC---C---CHHHHCCCCCCCEEEEEEEEEECCC--CCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCE
Q ss_conf 88867---8---7264148854322436699997799--76773654356544678826888889899999999874953
Q gi|254781024|r 66 IDSLL---P---RWREDKGHPFHTVVKRDLYWFLNAQ--RSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVE 137 (554)
Q Consensus 66 L~eL~---P---d~~e~~g~pl~~~v~~d~~~~l~~~--~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gve 137 (554)
++.|. | +|.+..|.|+.+. .+...+...- .+..+.....++.... +. -.-..+-+-|.+++...+++
T Consensus 85 v~~l~~~~~~~v~~L~~~Gv~f~r~--~~G~~~~r~~gg~s~~~gg~~~~R~~~~-~d--~tG~~i~~~L~~~~~~~~i~ 159 (588)
T PRK08958 85 IEYMCKTGPEAILELEHMGLPFSRL--DDGRIYQRPFGGQSKNFGGEQAARTAAA-AD--RTGHALLHTLYQQNLKNKTT 159 (588)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCEEEEC-CC--CCCHHHHHHHHHHHHCCCCE
T ss_conf 9999998899999999869986147--8997500136872000277633247631-57--64458887689998535988
Q ss_pred ECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHH
Q ss_conf 3068224347762776201454124324434665787563026774257860664432554
Q gi|254781024|r 138 IYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTR 198 (554)
Q Consensus 138 i~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak 198 (554)
++..+.+.+++.+++|+++|+..-+.- . ..-..|+||.||.|.|-.+.+-.
T Consensus 160 i~~~~~~~~li~~~~G~v~G~~~~~~~---~-------g~~~~i~AkaVILATGG~g~ly~ 210 (588)
T PRK08958 160 IFSEWYALDLVKNQDGAVVGCTAICIE---T-------GEVVYFKARATVLATGGAGRIYQ 210 (588)
T ss_pred EEEEEEEEEEEECCCCEEEEEEEEECC---C-------CCEEEEEECEEEEECCCCCCCCC
T ss_conf 999689999988589969999999778---9-------91999982769990698654454
No 75
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.68 E-value=6.2e-13 Score=108.80 Aligned_cols=161 Identities=22% Similarity=0.308 Sum_probs=97.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC--CCCCE---E---C--------------------HHH
Q ss_conf 647799989768999999999808997399997867789864--02740---3---3--------------------367
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI--LSGAI---I---D--------------------PIG 65 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i--~sG~v---l---~--------------------p~a 65 (554)
+|||||||+|.||++||+.+++ + .+|+||||....|++. .+|++ + . +..
T Consensus 5 ~~DVlVIGsG~AGl~AAi~a~~-~--~~v~vi~K~~~~~s~s~~a~gGi~a~~~~~~~Ds~e~~~~Dt~~aG~~l~d~~l 81 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGP-R--ARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQDA 81 (583)
T ss_pred CCCEEEECCCHHHHHHHHHHCC-C--CCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHH
T ss_conf 1788999962999999997156-9--977999788999972888865574022799999999999999986268779999
Q ss_pred HHHHC---C---CHHHHCCCCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCC-------CEEEE--HHHHHHHHHHH
Q ss_conf 88867---8---7264148854322436699997799767736543565446788-------26888--88989999999
Q gi|254781024|r 66 IDSLL---P---RWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKE-------HYIVS--LGQVCRWLKNK 130 (554)
Q Consensus 66 L~eL~---P---d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g-------~yiv~--r~~fd~~L~~~ 130 (554)
++.|. | +|.+..|.|+.+. +++.+..... ....++++ .+..+ -..+-+-|.++
T Consensus 82 v~~l~~~~~~~i~~Le~~Gv~f~r~----------~~G~~~~~~~--gghs~~~g~~~~~r~~~~~d~tG~~i~~~L~~~ 149 (583)
T PRK08205 82 AEIMAKEAIDAVLDLEKMGLPFNRT----------PEGKIDQRRF--GGHTRDHGKAPVRRACYAADRTGHMILQTLYQN 149 (583)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEC----------CCCCEECCCC--CCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH
T ss_conf 9999998999999999779973017----------9987711243--663345567763036750666509999999999
Q ss_pred HHHCCCEECCCCEEEEEEE---CCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHH
Q ss_conf 9874953306822434776---27762014541243244346657875630267742578606644325542
Q gi|254781024|r 131 AEALGVEIYCGFTATEIYY---GKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQ 199 (554)
Q Consensus 131 Ae~~Gvei~~g~~v~~i~~---~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~ 199 (554)
+.+.|++++..+.+.+++. +++|+++|+..-+... ..-..|+||.||.|.|-.+.+-+.
T Consensus 150 ~~~~~i~~~~~~~~~~ll~~~~~~~g~v~Ga~~~d~~~----------g~~~~i~AkaVIlATGG~~~ly~~ 211 (583)
T PRK08205 150 CVKHGVEFFNEFYVLDLILTETPGGPVAAGVVAYELAT----------GEIHVFHAKAVVFATGGSGRVYKT 211 (583)
T ss_pred HHHCCCEEEEEEEEEEEEEEEECCCCCEEEEEEEEECC----------CCEEEEECCEEEECCCCCCCCCCC
T ss_conf 98779879977899999998864898289999998079----------978999729799888987566556
No 76
>TIGR00292 TIGR00292 thiazole biosynthesis enzyme; InterPro: IPR002922 This family includes P32318 from SWISSPROT a putative thiamine biosynthetic enzyme . This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.; GO: 0009228 thiamin biosynthetic process.
Probab=99.67 E-value=1.2e-15 Score=127.75 Aligned_cols=162 Identities=23% Similarity=0.343 Sum_probs=102.8
Q ss_pred HCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEE-EE
Q ss_conf 10364779998976899999999980899739999786778986402740333678886787264148854322436-69
Q gi|254781024|r 11 DVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKR-DL 89 (554)
Q Consensus 11 e~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~-d~ 89 (554)
+-||-|||||||||+|||||++||+.|+||||+||||.--+|.-+=.|+. ||+. -|.+ +-
T Consensus 18 ~~~e~DViiVGAGpSGLtAAyylA~~gPDLKv~vlEr~la~GGG~WgGGm--------lF~~-----------~Vv~~pA 78 (283)
T TIGR00292 18 DYAESDVIIVGAGPSGLTAAYYLAKEGPDLKVVVLERKLAFGGGSWGGGM--------LFSK-----------IVVEKPA 78 (283)
T ss_pred HHHHCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCC--------CCCC-----------EEEECHH
T ss_conf 55010667987897466899999842998069998511026898664222--------4561-----------3651404
Q ss_pred EEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCC-CEECCCCEEEEEEECCCC-----CEEEEEECCC
Q ss_conf 9997799767736543565446788268888898999999998749-533068224347762776-----2014541243
Q gi|254781024|r 90 YWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALG-VEIYCGFTATEIYYGKKG-----EALGILTGEK 163 (554)
Q Consensus 90 ~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~G-vei~~g~~v~~i~~~e~g-----~vvgv~t~~~ 163 (554)
-.+|.+ |.+ +-.-..++.|+-+=.+|-.-|+.+|-++| +.||.++.|-++++-++- .|.||.++-.
T Consensus 79 ~~~L~e---~gI-----~~~d~~dg~~Vads~e~~s~l~s~a~~aGn~Ki~~~~~vEDl~~R~~~ekGe~gv~Gvv~nw~ 150 (283)
T TIGR00292 79 KEILDE---FGI-----RYEDEGDGYVVADSAEFISTLASKALQAGNAKIFNGVSVEDLILRDDTEKGEVGVAGVVINWS 150 (283)
T ss_pred HHHHHH---CCC-----CEEECCCCEEEEHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCEEEEEEEEEEE
T ss_conf 688886---598-----133568854872367689999999865887314333688877876889865135778987004
Q ss_pred ---------------CCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHH
Q ss_conf ---------------2443466578756302677425786066443255421
Q gi|254781024|r 164 ---------------GKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQL 200 (554)
Q Consensus 164 ---------------G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l 200 (554)
.+...|.+-|. ..+..+|+|.||+|.|.-+.+-+-+
T Consensus 151 LvtqahGtqCCmDPn~iE~AGlh~DG-tRpL~~r~~vvvdaTGHda~~~~~~ 201 (283)
T TIGR00292 151 LVTQAHGTQCCMDPNAIELAGLHVDG-TRPLTLRSRVVVDATGHDAEIVAVV 201 (283)
T ss_pred EEECCCCCCCCCCCCHHEECCCCCCC-CCCCEEECCEEEECCCCCCCEEEEE
T ss_conf 22104674102584331001543478-8571000306896268865435487
No 77
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.66 E-value=6.3e-15 Score=122.66 Aligned_cols=160 Identities=21% Similarity=0.312 Sum_probs=92.5
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC---CCCCCCCCEE------CHH----HH--HHHCCCHHHH
Q ss_conf 0364779998976899999999980899739999786778---9864027403------336----78--8867872641
Q gi|254781024|r 12 VFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEV---GAHILSGAII------DPI----GI--DSLLPRWRED 76 (554)
Q Consensus 12 ~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~p---G~~i~sG~vl------~p~----aL--~eL~Pd~~e~ 76 (554)
+|.|||||||||-.|+++|++|++.| .+|+||||..-. |+..-...++ .+. ++ -+++.++.+.
T Consensus 1 ~~r~DVvVIGaGi~G~s~A~~La~~G--~~V~vle~~~~~~~~gss~g~~~~~r~~~~~~~~~~~l~~~s~~~~~~l~~~ 78 (377)
T PRK11259 1 SMRYDVIVIGLGSMGSAAGYYLARAG--LRVLGIDRFMPPHQQGSSHGDTRIIRHAYGEGPAYVPLVLRAQELWRELERE 78 (377)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHCC--CCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 95048999995299999999999789--9599992899886546676642066764567877899999999999999987
Q ss_pred CCCCCCCEEEEEEEEEECCCC--------------CE------------ECCCCCCCCC----CCCCCCEEEEHHHHHHH
Q ss_conf 488543224366999977997--------------67------------7365435654----46788268888898999
Q gi|254781024|r 77 KGHPFHTVVKRDLYWFLNAQR--------------SI------------QIPHFCLPDF----MDNKEHYIVSLGQVCRW 126 (554)
Q Consensus 77 ~g~pl~~~v~~d~~~~l~~~~--------------~~------------~~p~~~~p~~----~~~~g~yiv~r~~fd~~ 126 (554)
.+.++ .......++.++. .+ .+|....+.. +....+ .++-..+.+.
T Consensus 79 ~g~~~---~~~~G~l~~a~~~~~~~~~~~~~~~~~G~~~e~l~~~e~~~~~P~l~~~~~~~g~~~p~~G-~v~p~~~~~a 154 (377)
T PRK11259 79 TGEPL---FVQTGVLNLGPADSAFLANVARSARQHGLPHEVLDAAEIRRRWPEFRVPDNYIALFEPDSG-FLRPELAIKA 154 (377)
T ss_pred HCCCE---EEEECCEEECCCHHHHHHHHHHHHHHCCCCCEEECHHHHHHHCCCCCCCCCEEEEEECCCC-EECHHHHHHH
T ss_conf 49752---8750748973877999999999999769980995899999867765789877999958982-6749999999
Q ss_pred HHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCH
Q ss_conf 999998749533068224347762776201454124324434665787563026774257860664432
Q gi|254781024|r 127 LKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGS 195 (554)
Q Consensus 127 L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~ 195 (554)
|++.|++.|++++.++.|+++..+.++ +.|.|.+ | +++|+.||.|-|+.+.
T Consensus 155 l~~~a~~~G~~i~~~~~V~~i~~~~~~--v~V~T~~-G---------------~i~A~~VV~AaGaws~ 205 (377)
T PRK11259 155 HLRLAREAGAELLFNEPVTAIEHDDDG--VTVTTAD-G---------------TYSAKKLVVSAGTWVK 205 (377)
T ss_pred HHHHHHHCCCCEEECEEEEEEEECCCE--EEEEECC-C---------------EEECCEEEECCCHHHH
T ss_conf 999999749965813488867874998--9998089-4---------------7997979997565178
No 78
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase; InterPro: IPR012733 4-hydroxybenzoate 3-monooxygenase is a flavoprotein that converts its substrate to 3,4-dihydroxybenzoate, which subsequently enters the beta-ketioadipate pathway of aromatic degradation, using molecular oxygen and NADPH as shown below . 4-hydroxybenzoate + NADPH + O(2) = 3,4-dihydroxybenzoate + NADP(+) + H(2)O 4-hydroxybenzoate is an intermediate in the degradation of lignin and other aromatic plant compounds, and this enzyme is found extensively in soil bacteria. This enzyme is a homodimer where each subunit is composed of three distinct domains: an N-terminal flavin-binding domain with a beta-alpha-beta fold, a small substrate-binding domain composed of a single alpha helix and beta-sheet, and a C-terminal helical domain . The active site is found at the interface of all three domains. Catalysis occurs by a two-step reaction. In the first step, flavin is reduced by NADPH. Subsequently, the reduced flavin is oxygenated to a hydroperoxide which transfers the hydroxyl group to the substrate, forming 3,4-dihydroxybenzoate.; GO: 0018659 4-hydroxybenzoate 3-monooxygenase activity, 0050660 FAD binding, 0043639 benzoate catabolic process.
Probab=99.65 E-value=3.5e-14 Score=117.46 Aligned_cols=325 Identities=18% Similarity=0.188 Sum_probs=191.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC---CCEECHHHHHHHCCCHHHHCCCC--CCC-EEE
Q ss_conf 364779998976899999999980899739999786778986402---74033367888678726414885--432-243
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILS---GAIIDPIGIDSLLPRWREDKGHP--FHT-VVK 86 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~s---G~vl~p~aL~eL~Pd~~e~~g~p--l~~-~v~ 86 (554)
|..-|.|||||||||-..-.|.+.| +..++|||.+. +++++ .+||+.-.. +|+ +..++- +.+ -..
T Consensus 1 MkTqVaIiG~GPsGLLLGQLLh~~G--Id~viLEr~~~--dYVlgRIRAGvLE~g~v-~LL----~~agv~~Rm~~eG~~ 71 (393)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKAG--IDTVILERKSR--DYVLGRIRAGVLEQGTV-DLL----REAGVDERMDREGLV 71 (393)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCH--HHHHHHHCCCHHHHHHH-HHH----HHHHHHHHHHHCCCC
T ss_conf 9517999757735789999998669--85899723572--23433210123578999-999----872232234535873
Q ss_pred EEEEEEECCCCCEECCCCCCCCCCCCCCCE--EEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCE--EEEEECC
Q ss_conf 669999779976773654356544678826--888889899999999874953306822434776277620--1454124
Q gi|254781024|r 87 RDLYWFLNAQRSIQIPHFCLPDFMDNKEHY--IVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEA--LGILTGE 162 (554)
Q Consensus 87 ~d~~~~l~~~~~~~~p~~~~p~~~~~~g~y--iv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~v--vgv~t~~ 162 (554)
++.+.+...+..++++..- ...|.- |.=.-++-+=|.+..++.|..++....-+.+.--+.... ..|.-..
T Consensus 72 H~G~~ia~~g~~~riDl~~-----~tGG~~V~VYGQTEvtrDL~~ARe~~G~~~v~~a~~V~~HD~~~~~P~gc~VT~~~ 146 (393)
T TIGR02360 72 HEGIEIAFDGQRFRIDLKA-----LTGGKTVMVYGQTEVTRDLYEAREQAGLKTVYDADDVRLHDLAGDRPEGCHVTFER 146 (393)
T ss_pred CCCEEEECCCCEEECCHHH-----HCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 2565450178242000766-----05897899976615778899999863895564114321126567888952587778
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHH-HHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf 324434665787563026774257860664432554211224899888898998-8988887516566788808995043
Q gi|254781024|r 163 KGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFG-LGIKELWKIKPQYHRRGLALHSIGW 241 (554)
Q Consensus 163 ~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~-~gvke~~ei~~~~~~~G~~~h~~g~ 241 (554)
.|. ...|.|+|+.++||..|.=++.+..+ .++.--..-=|+ +|| +-+.||-.++=-++.|.-||
T Consensus 147 dG~------------~~~~dCDfIAGCDGFHGvSR~siP~~-~~k~fErVYPFGWLGi--LsetPPv~~ELIY~~h~RGF 211 (393)
T TIGR02360 147 DGE------------EHRIDCDFIAGCDGFHGVSRASIPAE-VLKEFERVYPFGWLGI--LSETPPVSHELIYSNHERGF 211 (393)
T ss_pred CCC------------EEEEEEEEEECCCCCCCCCCCCCCHH-HHHCCCCCCCCCCHHH--HCCCCCCCCCCCCCCCCCCH
T ss_conf 791------------77764026752788868654456512-4111245067620012--05786886444103676302
Q ss_pred CCCCCCCCCEEEEECCCCEEEEEEEECC-CCCCCCC--CHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCC
Q ss_conf 4768766412576647980599998326-6656688--988999998608004565038826303513400542124874
Q gi|254781024|r 242 PLDMNTSGGGFVYHFDDNLVSIGFVLHL-DYRNPWI--SAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPK 318 (554)
Q Consensus 242 ~~~~~~~gggwiy~~~d~~~~iG~v~~l-d~~~~~~--~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk 318 (554)
.+..- -...++.-=+-+.| |.-+.+. ..+++|.+= --+.+++.|--|-.++.+-. |.-+|-+-|
T Consensus 212 ALCSm---------RS~~rSRYY~Q~pL~D~vedWSDd~FW~ELK~R-lp~e~A~~LvTGPSiEKSIA--PLRSFV~EP- 278 (393)
T TIGR02360 212 ALCSM---------RSETRSRYYVQVPLTDKVEDWSDDRFWEELKRR-LPEEAAERLVTGPSIEKSIA--PLRSFVAEP- 278 (393)
T ss_pred HHHHH---------CCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHC-CCHHHHHHCCCCCCCHHHCC--CCCCCCCCC-
T ss_conf 45532---------036567358871456887788707789998613-78668754056764122116--787743386-
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH-HHHHHHHH
Q ss_conf 230887996123233136643522689999999999999987458865303678-99864204
Q gi|254781024|r 319 LSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEI-EDSWRQTQ 380 (554)
Q Consensus 319 ~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~~Y-e~~~~~s~ 380 (554)
+-+.++.|+||||..|-|.--||+++|.-.=...-+++.+....++. +.+..| ++.+.+-|
T Consensus 279 M~yGrLFLaGDAAHIVPPTGAKGLN~AASD~~yL~~aL~~~Y~~~~~-~gi~~YSa~aLaRvW 340 (393)
T TIGR02360 279 MRYGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQEGDS-AGIDGYSAKALARVW 340 (393)
T ss_pred CCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHH
T ss_conf 52465111046443588876221034888999999999997302216-577889999963332
No 79
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.65 E-value=5.3e-13 Score=109.24 Aligned_cols=179 Identities=21% Similarity=0.270 Sum_probs=107.0
Q ss_pred CCHHHCCCCHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC--CCCE---EC-------------
Q ss_conf 96010242001036477999897689999999998089973999978677898640--2740---33-------------
Q gi|254781024|r 1 MNSCDILHNKDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL--SGAI---ID------------- 62 (554)
Q Consensus 1 ~~~~~~~~~re~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~--sG~v---l~------------- 62 (554)
|+.....++|. +|||||||+|.||++||+.+++.| ++|+||||....|++.. +|++ +.
T Consensus 1 ~~~~~~~~~~~--~~DVlVIGsG~AGl~AA~~a~~~G--~~V~li~K~~~~~s~s~~A~GGi~a~~~~~~~Ds~~~h~~D 76 (591)
T PRK07057 1 MAAIKTSLPRR--KFDVVIVGAGGSGMRASLQLARAG--LSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHFHFYD 76 (591)
T ss_pred CCCCCCCCCCC--CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCHHHHHHHHEEECCCCCCCCHHHHHHH
T ss_conf 98767888744--778899996699999999998769--95899978899997478874235252589999998999999
Q ss_pred ----------HHHHHHHC---C---CHHHHCCCCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEE--HHHHH
Q ss_conf ----------36788867---8---726414885432243669999779976773654356544678826888--88989
Q gi|254781024|r 63 ----------PIGIDSLL---P---RWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVS--LGQVC 124 (554)
Q Consensus 63 ----------p~aL~eL~---P---d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~--r~~fd 124 (554)
+..++.|. | +|.+..|.|+.+. .+...++.+.+.-+......|. ....+..+ -..+-
T Consensus 77 Tl~~g~~l~d~~~v~~l~~~a~~~i~~L~~~Gv~f~r~--~dg~~~~r~~gGhs~~~g~~~~---~r~~~~~d~tG~~i~ 151 (591)
T PRK07057 77 TIKGSDWLGDQDAIEFMCREAPNVVYELEHFGMPFDRN--ADGTIYQRPFGGHTANYGEKPV---QRACAAADRTGHALL 151 (591)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCEEECCCCCCCCCCCCCCC---CEEEECCCCCCHHHH
T ss_conf 99861677789999999998999999999869941017--9987821356771044567864---245531677549999
Q ss_pred HHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHH
Q ss_conf 99999998749533068224347762776201454124324434665787563026774257860664432554
Q gi|254781024|r 125 RWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTR 198 (554)
Q Consensus 125 ~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak 198 (554)
+-|.+++.+.+++++..+.+.+++.+++|+++|+..-+.- + ..-..|+||.||.|.|-.+.+-+
T Consensus 152 ~~l~~~~~~~~v~~~~~~~~~~ll~~~~G~v~Ga~~~~~~---~-------g~~~~~~AkaVIlATGG~g~ly~ 215 (591)
T PRK07057 152 HTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEME---T-------GDVYILEAKTTLFATGGAGRIFA 215 (591)
T ss_pred HHHHHHHHHCCCEEEEEEEEEEEEECCCCEEEEEEEEECC---C-------CCEEEEEEEEEEECCCCCCCCCC
T ss_conf 9999999852988999778999987479969999999757---9-------90999983369987888766666
No 80
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.65 E-value=2.5e-13 Score=111.52 Aligned_cols=39 Identities=36% Similarity=0.646 Sum_probs=34.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 64779998976899999999980899739999786778986
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAH 54 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~ 54 (554)
.--|.||||||||||||+.|+++| ++|.|+||.+.+|.-
T Consensus 137 gkkVAVIGaGPAGLsaA~~La~~G--~~VtVfE~~~~~GGm 175 (560)
T PRK12771 137 GKRVAVIGGGPAGLSAAYQLRRLG--HAVTIFEAGPKLGGM 175 (560)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEECCCCCCCCE
T ss_conf 998999897789999999999769--858996767888988
No 81
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.60 E-value=4.6e-14 Score=116.63 Aligned_cols=64 Identities=20% Similarity=0.295 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE-EEEEEECCCCCHHH
Q ss_conf 898999999998749533068224347762776201454124324434665787563026774-25786066443255
Q gi|254781024|r 121 GQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLS-KYMLVGEGACGSLT 197 (554)
Q Consensus 121 ~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~A-k~vI~AdG~~s~la 197 (554)
..+..-|.+.|++.|++|+.++++++++. ++|+|+||+..+.+. ...++| |-||+|.|-.+.=.
T Consensus 210 ~~l~~~l~~~~~~~Gv~i~~~t~~~~Li~-d~g~V~GV~a~~~~g------------~~~i~A~kgVILATGGf~~N~ 274 (567)
T PRK12842 210 NALAARLAKSALDLGIPILTGTPARELIT-EGGRVVGARVGDGGG------------ERRITARRGVVLACGGFPHDL 274 (567)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEE-CCCEEEEEEEEECCC------------EEEEEECCEEEEECCCCCCCH
T ss_conf 89999999999975988995788889886-299799999996895------------599981333899038855499
No 82
>PRK07233 hypothetical protein; Provisional
Probab=99.57 E-value=1.5e-11 Score=99.19 Aligned_cols=56 Identities=23% Similarity=0.128 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCC
Q ss_conf 8989999999987495330682243477627762014541243244346657875630267742578606644
Q gi|254781024|r 121 GQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGAC 193 (554)
Q Consensus 121 ~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~ 193 (554)
..+-+-|++..++.|++|+.+++|++|..+ ++.+.++.++ |.++.|+.||.|--..
T Consensus 197 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~-~~~v~~v~~~----------------g~~~~ad~VI~a~p~~ 252 (430)
T PRK07233 197 GTLLDALAEAIEARGGEIRLGTPVTEVVIE-GGVVTGVETD----------------GEEEAFDAVISTIPPP 252 (430)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEE-CCEEEEEEEC----------------CCEEECCEEEECCCHH
T ss_conf 999999999999759999979978899995-9989999979----------------9499939999899989
No 83
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.56 E-value=4.5e-12 Score=102.82 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=57.1
Q ss_pred EEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCH-
Q ss_conf 8888898999999998749533068224347762776201454124324434665787563026774257860664432-
Q gi|254781024|r 117 IVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGS- 195 (554)
Q Consensus 117 iv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~- 195 (554)
.++-..|.+.|++.|++.|++++.++.|+++.. +++.+.+|.|.. ..++|+.||.|.|+.+.
T Consensus 197 ~~d~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~-~~~~v~~V~t~~----------------g~i~ad~vV~AaGaws~~ 259 (416)
T PRK00711 197 TGDCQLFTQRLAALAEQLGVKFRFNTPVDGLLV-EGGRITGVQTGG----------------GVITADAYVVALGSYSTA 259 (416)
T ss_pred EECHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE-ECCEEEEEECCC----------------CEEEEEEEEEECCHHHHH
T ss_conf 066799999999999853886200231589998-499899885389----------------557501699933743699
Q ss_pred HHHHHHHHCCC
Q ss_conf 55421122489
Q gi|254781024|r 196 LTRQLIERYSL 206 (554)
Q Consensus 196 lak~l~~~~~l 206 (554)
+.++++.+.++
T Consensus 260 l~~~lg~~~pv 270 (416)
T PRK00711 260 LLKPLGLDLPV 270 (416)
T ss_pred HHHHCCCCCCE
T ss_conf 99974997643
No 84
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.56 E-value=9.6e-12 Score=100.52 Aligned_cols=334 Identities=19% Similarity=0.189 Sum_probs=165.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC--CCCCEE-----------------------CHHHHH
Q ss_conf 3647799989768999999999808997399997867789864--027403-----------------------336788
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI--LSGAII-----------------------DPIGID 67 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i--~sG~vl-----------------------~p~aL~ 67 (554)
++.||||||+|.||++||+.|++ + ++|+||||....|+.. .+|++- ++..++
T Consensus 3 ~~tDVlVIGsG~AGl~AAi~a~~-~--~~V~li~K~~~~~~nS~~A~GGi~aa~~~dd~~~~~~DtlkaG~~~~d~~lv~ 79 (433)
T PRK06175 3 LYADVLIVGSGVAGLYCALNLRK-D--LKIVLVSKKKLNECNTYLAQGGISVARNKEDIPTFVEDTLKAGQYKNNLEAVK 79 (433)
T ss_pred CCCCEEEECCCHHHHHHHHHCCC-C--CCEEEEECCCCCCCCHHHHCCCCEEECCCCCHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 64878999956999999996178-9--98899978899997668760272473289987999999998657878899999
Q ss_pred HHC---C---CHHHHCCCCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH-CCCEECC
Q ss_conf 867---8---72641488543224366999977997677365435654467882688888989999999987-4953306
Q gi|254781024|r 68 SLL---P---RWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEA-LGVEIYC 140 (554)
Q Consensus 68 eL~---P---d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~-~Gvei~~ 140 (554)
.|. | +|.+..|.|+.+. .+.+.+ +..+..+.+ +..+... -.-..+-+-|.+++.+ .+++++.
T Consensus 80 ~l~~~s~~ai~~L~~~Gv~f~r~--~~g~~~-~r~GgHs~~-----R~~~~~d---~tG~~i~~~L~~~~~~~~~I~i~~ 148 (433)
T PRK06175 80 ILANESIENINKLIDMGLNFDKD--EKELNY-TKEGAHSVN-----RIVHFKD---YTGKKVEKILLKKVKKRKNITIIE 148 (433)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCC--CCCCEE-ECCCCCCCC-----CCCCCCC---CCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99998899999999759862116--887245-414656678-----5233588---629999999999997179967997
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 82243477627762014541243244346657875630267742578606644325542112248998888989988988
Q gi|254781024|r 141 GFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIK 220 (554)
Q Consensus 141 g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvk 220 (554)
++.+.+++. ++++++|+...+.| ....++||.||+|.|-.+.+-+.- ...+..-+.|+.
T Consensus 149 ~~~~~~Li~-~~~~v~G~v~~~~g------------~~~~i~AkaVILATGG~g~l~~~t--------TN~~~~tGdG~a 207 (433)
T PRK06175 149 NCELVDIIE-NDNTCIGGILLKDN------------KQINIYSKVTILATGGIGGLFKNS--------TNQRIITGDGIA 207 (433)
T ss_pred EEEEEEEEE-ECCEEEEEEEEECC------------CEEEEEECEEEECCCCCCCCCCCC--------CCCCCCCCHHHH
T ss_conf 388788787-38989999999579------------789998366998679865432477--------999886778999
Q ss_pred HHHHHCCCCCCCCEE-EEEECCCCCCCCCC------------CEEEEECCCCEEEEEEEEC-------------------
Q ss_conf 887516566788808-99504347687664------------1257664798059999832-------------------
Q gi|254781024|r 221 ELWKIKPQYHRRGLA-LHSIGWPLDMNTSG------------GGFVYHFDDNLVSIGFVLH------------------- 268 (554)
Q Consensus 221 e~~ei~~~~~~~G~~-~h~~g~~~~~~~~g------------ggwiy~~~d~~~~iG~v~~------------------- 268 (554)
..++.--...+-.++ .|-.+++. ....+ |+.+.. .++.-.+.-...
T Consensus 208 ~A~raGA~l~dme~iQ~hPt~~~~-~~~~~~~~Lise~~RG~Ga~L~n-~~GeRF~~El~pRDvvs~ai~~e~~~~~~~~ 285 (433)
T PRK06175 208 IAIRHNIKIKDLDYIQIHPTAFYK-KTIEGKKFLISESVRGEGGKLLN-IKGERFVDELLPRDVVTKAIYEEMKKTNSNY 285 (433)
T ss_pred HHHHCCCCCCCCCCEEEEEEEECC-CCCCCCCEEECHHHCCCCCEEEC-CCCCCHHCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 999818873797606788637737-88877433532332278637977-9988811045753589999999997269975
Q ss_pred --CCCCCCCCCHHHHHHHHHHCCCHHHH-HCCC-------CEECCCCEECCCCCCCC--CCCCCCCCEEEECCCC-CCC-
Q ss_conf --66656688988999998608004565-0388-------26303513400542124--8742308879961232-331-
Q gi|254781024|r 269 --LDYRNPWISAYEELQRFKTHPDIRII-FTEG-------ERLEYGARVISEGGWQS--VPKLSFPGGSLIGCAA-GFV- 334 (554)
Q Consensus 269 --ld~~~~~~~~~~~lq~fk~hp~i~~~-l~gg-------~~~~yga~~ip~gg~~s--~pk~~~~g~lLvGDAA-G~v- 334 (554)
+|.. +.......++| |.+... +..+ -.+.-.+| ..+||... .-+..-+|+..+|++| |=+
T Consensus 286 v~ld~~--~~~~~~~~~~~---p~i~~~~~~~giD~~k~~i~v~P~~H-y~mGGi~id~~~~t~i~GLyAaGEva~~GvH 359 (433)
T PRK06175 286 VYLDIT--FKDKDFLKNRF---PTIYNNCLKRGIDITKDKIPVSPAQH-YFMGGIKVDLNSKTSMKNLYAFGEVSCTGVH 359 (433)
T ss_pred EEEECC--CCCHHHHHHHH---HHHHHHHHHCCCCCCCCCEEEECCCC-CCCCCEEECCCCCCCCCCEEEEECCCCCCCC
T ss_conf 883112--37879999875---89999999829998588658974513-1066967999985348997882776567877
Q ss_pred --CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC---C----HHHHHHHHHHHHHHHHHHHHH
Q ss_conf --366435226899999999999999874588653---0----367899864204667888742
Q gi|254781024|r 335 --NLLRIKGSHNAIISGMLAAEKIVERLSNGKKHD---D----PIEIEDSWRQTQIGKDLWIIR 389 (554)
Q Consensus 335 --nP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~---~----l~~Ye~~~~~s~~~~el~~~r 389 (554)
|=+-+.-+--++.-|+.|||.|.+.+..-++.. . -.+|...+++.-+.+++.+.|
T Consensus 360 GaNRLggnSLle~~VfGr~Ag~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (433)
T PRK06175 360 GANRLASNSLLEGLVFSKRGAEKINSEIDNIKLNITKIYTLKHDVEYYSLLNKKIIIKELEKLR 423 (433)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4010588899999999999999999998516677421101477799998753768999999999
No 85
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.56 E-value=4.6e-12 Score=102.71 Aligned_cols=208 Identities=15% Similarity=0.120 Sum_probs=102.7
Q ss_pred EEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCC-
Q ss_conf 6888889899999999874953306822434776277620145412432443466578756302677425786066443-
Q gi|254781024|r 116 YIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACG- 194 (554)
Q Consensus 116 yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s- 194 (554)
..++-.+|.+-|++.+++.|++++.++.|+.+..++++..+...++..+ ...++.|+.||.|-|+.|
T Consensus 192 ~~~dp~~~~~al~~~~~~~G~~~~~~~~V~~i~~~~~~v~v~~~~~~~~------------~~~~~~ad~vViAaGawS~ 259 (410)
T PRK12409 192 STGDIHKFTTGLAAACARLGVQFRYGQEVTDIKTDGDRVVLTCQDSSQG------------DSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred EEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEECCCCCC------------CCCEEEEEEEEECCCCCCH
T ss_conf 0635899999999999977999987855899998099899996464233------------5525883049987666637
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCC
Q ss_conf 25542112248998888989988988887516566788808995043476876641257664798059999832666566
Q gi|254781024|r 195 SLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMNTSGGGFVYHFDDNLVSIGFVLHLDYRNP 274 (554)
Q Consensus 195 ~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~~~gggwiy~~~d~~~~iG~v~~ld~~~~ 274 (554)
.|+++++.+.++.+..- |.+. ..+............. +. +........+.++++..||-..-....+.
T Consensus 260 ~L~~~lG~~~Pl~p~rG---y~l~----~~~~~~~~~~~~p~~~----~~-~~~~~~~~~~~g~~~lrv~gt~E~~g~d~ 327 (410)
T PRK12409 260 QLAAMLGDRVNVYPVKG---YSIT----VNLDDEASRAAAPWVS----LL-DESAKIVTSRLGADRFRVAGTAEFNGYNR 327 (410)
T ss_pred HHHHHCCCCCCEEECCC---EEEE----EECCCCCCCCCCCEEE----EE-CCCCEEEEEECCCCEEEECCCEEECCCCC
T ss_conf 66865388652364267---5899----8558754334687278----97-27966998625798489626402258889
Q ss_pred CCCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCCCEEEECCC--CCC-CCCC-CCCCHHHHHHHHH
Q ss_conf 88988999998608004565038826303513400542124874230887996123--233-1366-4352268999999
Q gi|254781024|r 275 WISAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKLSFPGGSLIGCA--AGF-VNLL-RIKGSHNAIISGM 350 (554)
Q Consensus 275 ~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~g~lLvGDA--AG~-vnP~-~g~GI~~Am~SG~ 350 (554)
..++. .++.+... .++++..-.... ..+ |.......-|+.=++|-+ .|+ ++.- ..-|+..|-.||+
T Consensus 328 ~~~~~-~~~~l~~~--a~~~~P~l~~~~----~~~---W~G~RP~tpD~lPvIG~~~~~gl~~a~GH~~~G~~lap~tg~ 397 (410)
T PRK12409 328 DIRAD-RIRPLVDW--VRRNFPGVSTRR----VVP---WAGLRPMMPNMMPRVGRGRRPGVFYNTGHGHLGWTLSAATAD 397 (410)
T ss_pred CCCHH-HHHHHHHH--HHHHCCCCCCCC----CEE---EEEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf 98989-99999999--999788977266----506---254506899988982878999999997881257789999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254781024|r 351 LAAEKIV 357 (554)
Q Consensus 351 lAAEai~ 357 (554)
+.|+.|.
T Consensus 398 lvA~li~ 404 (410)
T PRK12409 398 LVAQVVQ 404 (410)
T ss_pred HHHHHHC
T ss_conf 9999975
No 86
>PRK06854 adenylylsulfate reductase; Validated
Probab=99.56 E-value=2e-12 Score=105.30 Aligned_cols=178 Identities=20% Similarity=0.237 Sum_probs=98.7
Q ss_pred CCCHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC-CC--C---EECH-HHHHHHCCCHHHHCCC
Q ss_conf 42001036477999897689999999998089973999978677898640-27--4---0333-6788867872641488
Q gi|254781024|r 7 LHNKDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL-SG--A---IIDP-IGIDSLLPRWREDKGH 79 (554)
Q Consensus 7 ~~~re~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~-sG--~---vl~p-~aL~eL~Pd~~e~~g~ 79 (554)
-+|=+.+++||+|||+|-|||.||+.+++.+++++|+|++|+..-++... .| + ++.+ ...+..+-+.. ..+.
T Consensus 4 ~~~~~~~~tDVLVIGsG~AGL~AAl~a~e~~~~~~V~lvsK~~~~~Sg~~A~G~~~i~a~~~~~ds~e~~~~~~~-~~~~ 82 (610)
T PRK06854 4 NPEVVEVDTDILIIGGGMAGCGAAFEAAYWAPGLKVLLVEKANIDRSGAVAQGLSAINTYIGEENTPEDYVDYVR-NDLM 82 (610)
T ss_pred CCCEEEEECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH-HHHC
T ss_conf 984578876999999769999999999877899979999899999643899999999850789999999999999-8515
Q ss_pred CCCCEEEEEEEEEECCC--CC-EECCCCCCCCCCCCCCCEE--------EEHHHHHHHHHHHHHH-CCCEECCCCEEEEE
Q ss_conf 54322436699997799--76-7736543565446788268--------8888989999999987-49533068224347
Q gi|254781024|r 80 PFHTVVKRDLYWFLNAQ--RS-IQIPHFCLPDFMDNKEHYI--------VSLGQVCRWLKNKAEA-LGVEIYCGFTATEI 147 (554)
Q Consensus 80 pl~~~v~~d~~~~l~~~--~~-~~~p~~~~p~~~~~~g~yi--------v~r~~fd~~L~~~Ae~-~Gvei~~g~~v~~i 147 (554)
-+.. .+-+..+... .. -.+..+..|......|.|. +.-..+.+.|.++++. .+++++..+.+.++
T Consensus 83 gl~d---~~~v~~~~~~~~~~i~~L~~~Gv~f~r~~~G~~~~~g~~~~~~~G~~~~~~l~~~~~~~~~i~i~e~~~~~dL 159 (610)
T PRK06854 83 GIVR---EDLVYDLARHVDSSVHLFEEWGLPIWKDDEGKYVRRGKWQIMINGESYKPIVAEAAKKALADNIYNRVFIVDL 159 (610)
T ss_pred CCCC---HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCEECCCCHHHHHHHHHHHHCCCCCEEECCEEEEEE
T ss_conf 7845---9999999998899999999779986509999887334866632889999999999965799889851687888
Q ss_pred EECCC--CCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHH
Q ss_conf 76277--6201454124324434665787563026774257860664432554
Q gi|254781024|r 148 YYGKK--GEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTR 198 (554)
Q Consensus 148 ~~~e~--g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak 198 (554)
+.+++ ++++|+..-+.- + ..-..|+||.||.|.|-.+.+-+
T Consensus 160 l~~~~~~~r~~Ga~~~d~~---~-------g~~~~~~AkaVILATGG~g~ly~ 202 (610)
T PRK06854 160 LVDDNKPNRIAGAVGFSVR---E-------NKFYVFKAKAVIVATGGAVGIYR 202 (610)
T ss_pred EEECCCCCEEEEEEEEECC---C-------CCEEEEEEEEEEEECCCCCEECC
T ss_conf 6608977759999999616---8-------91899970279980477513106
No 87
>pfam03486 HI0933_like HI0933-like protein.
Probab=99.55 E-value=2.5e-13 Score=111.55 Aligned_cols=138 Identities=28% Similarity=0.446 Sum_probs=89.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC-CCCE---ECH-HHHHHHC---C---------------
Q ss_conf 477999897689999999998089973999978677898640-2740---333-6788867---8---------------
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL-SGAI---IDP-IGIDSLL---P--------------- 71 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~-sG~v---l~p-~aL~eL~---P--------------- 71 (554)
|||+||||||||++||+.+++.| .+|+||||...+|.|++ +|+. ++- ...++++ |
T Consensus 1 yDv~VIGgGaaGl~aAi~aa~~g--~~V~ilEk~~~~GkKll~tG~GRCN~TN~~~~~~~~~~~~~~~~fl~~~l~~F~~ 78 (405)
T pfam03486 1 YDVIVIGGGAAGLMAAISAAKRG--RRVLLIEKGKKLGRKILISGGGRCNVTNSVEPDNFLSRYPGNPHFLKSALSRFTP 78 (405)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCEEEECCCCCCEECCCCCHHHHHHHCCCCHHHHHHHHHHCCH
T ss_conf 97999996699999999998689--9599995899875015882689614078999799986257757999999984899
Q ss_pred ----CHHHHCCCCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEE
Q ss_conf ----7264148854322436699997799767736543565446788268888898999999998749533068224347
Q gi|254781024|r 72 ----RWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEI 147 (554)
Q Consensus 72 ----d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i 147 (554)
+|.+..|.++... ++++ -+|. . -+-..+-..|...+++.||+++.++.|+++
T Consensus 79 ~d~~~ff~~~Gl~~~~e----------~~Gr-vfP~-----s--------~~A~~Vl~~L~~~l~~~gV~i~~~~~V~~I 134 (405)
T pfam03486 79 WDFIAWFEELGVPLKEE----------DHGR-LFPV-----S--------DKASDIVDALLNELKELGVKIRTRTRVLSV 134 (405)
T ss_pred HHHHHHHHHCCCEEEEC----------CCCE-EECC-----C--------CCHHHHHHHHHHHHHHCCCEEEECCEEEEE
T ss_conf 99999999779905977----------8997-9789-----8--------986999999999999779789958887899
Q ss_pred EECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCH
Q ss_conf 762776201454124324434665787563026774257860664432
Q gi|254781024|r 148 YYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGS 195 (554)
Q Consensus 148 ~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~ 195 (554)
..++++. ..+.++ +.+++|+.||.|.|-.|.
T Consensus 135 ~~~~~~~-~~v~~~----------------~~~~~a~~vIlAtGG~s~ 165 (405)
T pfam03486 135 EKDDDGR-FRVDTG----------------GEELEADSLVLATGGLSW 165 (405)
T ss_pred EECCCCE-EEEEEC----------------CCEEEECEEEEECCCCCC
T ss_conf 9759945-999948----------------958972789990488665
No 88
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.54 E-value=2.7e-13 Score=111.27 Aligned_cols=94 Identities=17% Similarity=0.240 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEE-EEEEECCCCCHHHHHH
Q ss_conf 989999999987495330682243477627762014541243244346657875630267742-5786066443255421
Q gi|254781024|r 122 QVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSK-YMLVGEGACGSLTRQL 200 (554)
Q Consensus 122 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak-~vI~AdG~~s~lak~l 200 (554)
.+..-|...+++.|++|+.++++++++.+++|+|+||.....| ....++|+ -||+|.|-.+.=...+
T Consensus 214 ~l~~~l~~~~~~~gv~i~~~t~~~~Li~d~~G~V~Gv~a~~~g------------~~~~i~A~kgVVLATGGf~~N~em~ 281 (584)
T PRK12835 214 SLAARLRLALKEAGVPLWLDSPMTELITDPDGAVVGAVVERDG------------RPVRIGARRGVILASGGFDHDMDWR 281 (584)
T ss_pred HHHHHHHHHHHHCCCEEEECCCHHEEEECCCCCEEEEEEEECC------------EEEEEEECCEEEEECCCCCCCHHHH
T ss_conf 8999999999964984895570014477699988999999799------------0799970324899148866699999
Q ss_pred HHHCCCC----CCCCHHHHHHHHHHHHHHCC
Q ss_conf 1224899----88889899889888875165
Q gi|254781024|r 201 IERYSLM----DGRQPQKFGLGIKELWKIKP 227 (554)
Q Consensus 201 ~~~~~l~----~~~~p~~~~~gvke~~ei~~ 227 (554)
....+.. ....|..-+-|++-..++-.
T Consensus 282 ~~~~p~~~~~~~~g~p~~tGDGi~ma~~~GA 312 (584)
T PRK12835 282 KEHLPELEKDWSFGNPANTGDGIRAGEKVGA 312 (584)
T ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf 9857112477445898877789999998599
No 89
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.54 E-value=2e-12 Score=105.19 Aligned_cols=176 Identities=19% Similarity=0.268 Sum_probs=101.2
Q ss_pred CCCHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHH-CCCHHHHCCCCCCCEE
Q ss_conf 420010364779998976899999999980899739999786778986402740333678886-7872641488543224
Q gi|254781024|r 7 LHNKDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSL-LPRWREDKGHPFHTVV 85 (554)
Q Consensus 7 ~~~re~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL-~Pd~~e~~g~pl~~~v 85 (554)
+.+.+.+++||+|||||-||+.||+..++.+ .+|+|+||..--|++-++.+ ..++|-. .|...+....- ..+
T Consensus 6 ~~~~~~~d~DVLIIGGGtAG~~AAi~Ake~~--~~VlvleKA~ikRSGaiAaG---mdalNaav~pG~~~PE~yv--~~~ 78 (894)
T PRK13800 6 LTDALRLDCDVLVIGGGTAGTMAALTAAEHG--AQVLLLEKAHVRHSGALAMG---MDGVNNAVIPGKAEPEDYV--AEI 78 (894)
T ss_pred CCCHHHCCCCEEEECCCCHHHHHHHHHHHCC--CCEEEEECCCCCCCHHHHHH---HHHHHHHCCCCCCCHHHHH--HHH
T ss_conf 6536563778799889726889999976069--95899854566652057653---4578751377879888999--999
Q ss_pred EEEEEEEECC-------CCC----EECCCCCCCCCCCCCCCE-----------EEEH---HHHHH----HHHHHHHHCCC
Q ss_conf 3669999779-------976----773654356544678826-----------8888---89899----99999987495
Q gi|254781024|r 86 KRDLYWFLNA-------QRS----IQIPHFCLPDFMDNKEHY-----------IVSL---GQVCR----WLKNKAEALGV 136 (554)
Q Consensus 86 ~~d~~~~l~~-------~~~----~~~p~~~~p~~~~~~g~y-----------iv~r---~~fd~----~L~~~Ae~~Gv 136 (554)
++..-..+.+ ... ..+..+..|......|.| ++.. .+.-+ -|.++....|+
T Consensus 79 tk~~DgIvdqd~v~~~a~~~~~vv~eLE~~Gl~F~KDenG~y~~Rrvh~~G~~~l~mp~Ge~iK~iL~r~L~~~~~r~~V 158 (894)
T PRK13800 79 TRANDGIVNQRTVYQTATRGFAMVQRLERYGVKFEKDEHGEYAVRRVHRSGSYVLPMPEGKDVKKALYRVLRQRSMRERI 158 (894)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCE
T ss_conf 87236640389999999776899999997598403689878601020457851123644335579999999986320060
Q ss_pred EECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHH
Q ss_conf 3306822434776277620145412432443466578756302677425786066443255421
Q gi|254781024|r 137 EIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQL 200 (554)
Q Consensus 137 ei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l 200 (554)
+|+..+.+++++. ++|+++|+..-+. + ..+-..|+||-||.|.|..+.|.+-.
T Consensus 159 ~v~Nrv~~t~lLt-~dGrv~Ga~gf~i---r-------tGe~~virAKAVIlATGgaGrLglP~ 211 (894)
T PRK13800 159 RIENRLMPVRVLT-AGGRAVGAAALNT---R-------TGEFVTVGAKAVILATGPCGRLGLPA 211 (894)
T ss_pred EEEEEEEEEEEEC-CCCEEEEEEEECC---C-------CCEEEEEECCEEEEECCCCCCCCCCC
T ss_conf 8974345789971-3883888888603---5-------66389997277999036555567787
No 90
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.53 E-value=1.1e-13 Score=113.93 Aligned_cols=65 Identities=20% Similarity=0.256 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE-EEEEEECCCCCHHHHH
Q ss_conf 98999999998749533068224347762776201454124324434665787563026774-2578606644325542
Q gi|254781024|r 122 QVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLS-KYMLVGEGACGSLTRQ 199 (554)
Q Consensus 122 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~A-k~vI~AdG~~s~lak~ 199 (554)
.+..-|.+.+++.|++|+..+++++++.+ +|+|+||.....+. ...++| |-||+|.|-.+.=...
T Consensus 216 ~lv~~l~~~~~~~gv~i~~~t~~~~Li~d-~g~V~Gv~~~~~~~------------~~~i~A~kaVILATGGf~~N~em 281 (579)
T PRK06134 216 ALVARLLKSARDLGVRIWESAPARELLRE-DGRVAGAVVERPGG------------LQRIRARKGVVLAAGGFPHDPAR 281 (579)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCEEEEC-CCEEEEEEEEECCC------------EEEEEECCEEEECCCCCCCCHHH
T ss_conf 99999999999749889945732066503-99799999997894------------69998223289825886659999
No 91
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.53 E-value=1.8e-12 Score=105.62 Aligned_cols=177 Identities=20% Similarity=0.307 Sum_probs=100.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC--C-CCCCCCCEE----CHH-------HHHHHCC--------
Q ss_conf 64779998976899999999980899739999786778--9-864027403----336-------7888678--------
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEV--G-AHILSGAII----DPI-------GIDSLLP-------- 71 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~p--G-~~i~sG~vl----~p~-------aL~eL~P-------- 71 (554)
++||||||+|.||++||+.+++.| .+|+||||.+.. | .-..|++.. .+. ..++++-
T Consensus 4 ~VDVvVVG~G~AGl~AAi~Aae~G--a~V~llEK~~~~~~GG~s~~s~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 81 (456)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREAG--ASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGG 81 (456)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CEEEEEEEECCCCCCCHHHHHCCCHHHCCCHHHHCCCCCCHHHHHHHHHHHCCC
T ss_conf 388899998899999999999879--909999832777888030553864455368665426889999999999987289
Q ss_pred ------------------CHHHHCCCCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH
Q ss_conf ------------------72641488543224366999977997677365435654467882688888989999999987
Q gi|254781024|r 72 ------------------RWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEA 133 (554)
Q Consensus 72 ------------------d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~ 133 (554)
+|.+..|..+.... .+..... +....+.-.-..+.+-|.+.+++
T Consensus 82 ~~d~~l~~~~~~~s~~~i~wl~~~Gv~f~~~~----------~~~~~~~--------~~~~~~~g~G~~~~~~l~~~~~~ 143 (456)
T PRK08274 82 RTDEALARLLIRESSDCRDWMRKHGVRFQPPL----------SGALHVA--------RTNAFFMGGGKALVNALYRSAER 143 (456)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCEEEECC----------CCCCCCC--------CCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 87699999999723999999997196135668----------8864447--------98341479879999999999997
Q ss_pred CCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCC-----
Q ss_conf 495330682243477627762014541243244346657875630267742578606644325542112248998-----
Q gi|254781024|r 134 LGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMD----- 208 (554)
Q Consensus 134 ~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~----- 208 (554)
.|++|+.++++++++.+ +|+|+||..++ .+++||-||+|.|-.+.-...+-..++...
T Consensus 144 ~gv~i~~~t~~~~Li~d-~g~V~Gv~~~~----------------~~i~AkaVVLAtGGf~~N~em~~~~~~~~~~~~~~ 206 (456)
T PRK08274 144 LGVEIRYDAPVTALELD-DGRFVAARAGA----------------ERIRARAVVLAAGGFEANREWLREAWGQPADNFLI 206 (456)
T ss_pred CCCEEEECCEEEEEEEE-CCEEEEEEECE----------------EEECCCEEEEECCCCCCCHHHHHHHCCCCCCCCCC
T ss_conf 39979938888999990-99999999253----------------89716869995789888999998644863224410
Q ss_pred CCCHHHHHHHHHHHHHHCC
Q ss_conf 8889899889888875165
Q gi|254781024|r 209 GRQPQKFGLGIKELWKIKP 227 (554)
Q Consensus 209 ~~~p~~~~~gvke~~ei~~ 227 (554)
...|..-+-|++..+++--
T Consensus 207 ~g~~~~tGdGi~ma~~aGA 225 (456)
T PRK08274 207 RGTPYNQGVLLKMLLDAGA 225 (456)
T ss_pred CCCCCCCCHHHHHHHHCCC
T ss_conf 5898776699999998398
No 92
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.53 E-value=4.9e-13 Score=109.50 Aligned_cols=199 Identities=22% Similarity=0.366 Sum_probs=107.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC-CCCCCCEEC---HHH----------------HHHHC--
Q ss_conf 36477999897689999999998089973999978677898-640274033---367----------------88867--
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGA-HILSGAIID---PIG----------------IDSLL-- 70 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~-~i~sG~vl~---p~a----------------L~eL~-- 70 (554)
.||||||||+|.||++||+.+++.| .+|+||||...+|. -.+||+.+. ... ++.++
T Consensus 5 ~e~DVvVVG~G~AGl~AAi~Aae~G--a~V~vlEK~~~~GG~s~~sgG~~~~~~~~~q~~~Gi~Ds~e~~~~~~~~~~~~ 82 (552)
T PRK12844 5 VTVDVVVVGSGGGGMVAALAAASSG--LETLIVEKQPKVGGSTAMSGGVLWLPNNPLMLADGVPDSHEDALAYLDAVVGD 82 (552)
T ss_pred CEECEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCHHHHHHCCCEEECCCHHHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf 7209799896789999999999889--96899988999666479856585408999999718998999999999998455
Q ss_pred -----------------C---CHHHHCCCCCCCEEEEEEEEEECC------CCCEECC-----------CCCCCCCCCCC
Q ss_conf -----------------8---726414885432243669999779------9767736-----------54356544678
Q gi|254781024|r 71 -----------------P---RWREDKGHPFHTVVKRDLYWFLNA------QRSIQIP-----------HFCLPDFMDNK 113 (554)
Q Consensus 71 -----------------P---d~~e~~g~pl~~~v~~d~~~~l~~------~~~~~~p-----------~~~~p~~~~~~ 113 (554)
| +|.+..+..+.....-.. ++.+. .+.+... ....|......
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~wl~~~g~~f~~~~~~~d-~~~~~~gg~~~gr~~~~~~~d~~~~g~~~~~~~~~~~~~~ 161 (552)
T PRK12844 83 QGPASSPERREAYLTAGPAMISFLEHQGMRFARCEGWSD-YYPELPGGLARGRSVEAQPLDARKLGPWFAKLNPPMATPP 161 (552)
T ss_pred CCCCCCHHHHHHHHHHCHHHHHHHHHCCCEEEECCCCCC-CCCCCCCCCCCCCEECCCCCCHHHHCCHHHHCCCCCCCCC
T ss_conf 565888999999996089999999965983564267752-2456677766884202556775650411443066523477
Q ss_pred C---------------------------------------CEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCC
Q ss_conf 8---------------------------------------2688888989999999987495330682243477627762
Q gi|254781024|r 114 E---------------------------------------HYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGE 154 (554)
Q Consensus 114 g---------------------------------------~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~ 154 (554)
+ ..+..-..+..-|.+.+++.|++|+..+++++++. ++|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~gv~i~~~t~~~~Li~-d~G~ 240 (552)
T PRK12844 162 GTVVMTDEYKWLQLIKRTPRGMRTAARVGARTAAARIRGQKLLTNGAALIGRMLAAALAAGVPVWTNTPLTELVV-EDGR 240 (552)
T ss_pred CEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCEEEEE-CCCE
T ss_conf 401011245544432104322123434434545442125533457489999999999876993893572136762-2985
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCEEEEEE-EEEEEECCCCCHHHHHHHHHCCCC------CCCCHHHHHHHHHHHHHHCC
Q ss_conf 01454124324434665787563026774-257860664432554211224899------88889899889888875165
Q gi|254781024|r 155 ALGILTGEKGKNYDGTQGKHYIAPMLLLS-KYMLVGEGACGSLTRQLIERYSLM------DGRQPQKFGLGIKELWKIKP 227 (554)
Q Consensus 155 vvgv~t~~~G~~k~~~~~~~~~~g~~i~A-k~vI~AdG~~s~lak~l~~~~~l~------~~~~p~~~~~gvke~~ei~~ 227 (554)
|+||.....|. ..+++| |-||+|.|-.+.=...+ .+|.-. ....|..-+-|++-.+++-.
T Consensus 241 V~Gv~a~~~g~------------~~~i~A~kgVILATGGf~~N~em~-~~~~p~~~~~~~~~~~~~~tGdGi~ma~~~GA 307 (552)
T PRK12844 241 VTGVVVVRDGR------------EVLITARRGVLLNSGGFGHNAEMR-KRYQPQPNEGDWTIANPGDTGEGIEAAMRLGA 307 (552)
T ss_pred EEEEEEEECCE------------EEEEEECCEEEEECCCCCCCHHHH-HHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf 99999998994------------899984225799258720099999-97088755676446898878579999998598
Q ss_pred C
Q ss_conf 6
Q gi|254781024|r 228 Q 228 (554)
Q Consensus 228 ~ 228 (554)
.
T Consensus 308 ~ 308 (552)
T PRK12844 308 A 308 (552)
T ss_pred C
T ss_conf 4
No 93
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.50 E-value=6.7e-13 Score=108.57 Aligned_cols=91 Identities=14% Similarity=0.137 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE-EEEEEECCCCCHHHHHH
Q ss_conf 98999999998749533068224347762776201454124324434665787563026774-25786066443255421
Q gi|254781024|r 122 QVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLS-KYMLVGEGACGSLTRQL 200 (554)
Q Consensus 122 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~A-k~vI~AdG~~s~lak~l 200 (554)
.+...|.+.+++.|++|+.++++++++. ++|+|+||...+.|. ...|+| |-||+|.|-.+.=...+
T Consensus 220 ~l~~~l~~~~~~~gv~i~~~t~~~~L~~-d~g~V~Gv~~~~~g~------------~~~i~A~k~VVLATGGf~~N~em~ 286 (576)
T PRK12843 220 ALVARLLYSLRKRGVRILTQTDVESLET-DHGRVIGATVVVGGV------------PRRIRARKGVVLATGGFNRHPELR 286 (576)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEE-ECCEEEEEEEEECCE------------EEEEEECCCEEEECCCCCCCHHHH
T ss_conf 9999999999974987993785158884-199799999998996------------799993470899169977699999
Q ss_pred HHHCCC-----CCCCCHHHHHHHHHHHHHHC
Q ss_conf 122489-----98888989988988887516
Q gi|254781024|r 201 IERYSL-----MDGRQPQKFGLGIKELWKIK 226 (554)
Q Consensus 201 ~~~~~l-----~~~~~p~~~~~gvke~~ei~ 226 (554)
.+|.- .....|..-+-|++-..++-
T Consensus 287 -~~y~p~~~~~~~~~~~~~tGdGi~ma~~~G 316 (576)
T PRK12843 287 -RELLPATVARYSPCAPGHTGAAIDLALDLG 316 (576)
T ss_pred -HHHCCCCCCCCCCCCCCCCCHHHHHHHHCC
T ss_conf -973866434656688897858999999818
No 94
>pfam00890 FAD_binding_2 FAD binding domain. This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.
Probab=99.49 E-value=1.1e-12 Score=106.96 Aligned_cols=170 Identities=22% Similarity=0.304 Sum_probs=98.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC-CCCCEEC-------------HHH-HHHH-----------
Q ss_conf 7799989768999999999808997399997867789864-0274033-------------367-8886-----------
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI-LSGAIID-------------PIG-IDSL----------- 69 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i-~sG~vl~-------------p~a-L~eL----------- 69 (554)
||||||+|+||++||+.+++.| .+|+||||....|... .|++.+. +.. .+++
T Consensus 1 DVvVIG~G~AGl~AAi~Aae~G--a~VillEk~~~~gG~s~~s~G~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 78 (401)
T pfam00890 1 DVVVIGSGLAGLAAALEAAEAG--LKVAVVEKGQPFGGATAWSSGGIDALGTPPQGAGIDSPDLHPTDTLKGLDELADHP 78 (401)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCHHHHHCCCHHHCCCHHHCCCCCCHHHHHHHHHHHCCCCCCHH
T ss_conf 9899988699999999999789--94899978999997688845231004884351579999999999999658878899
Q ss_pred ----C-------CCHHHHCCCCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCC-CCEEEEHHHHHHHHHHHHHHCCCE
Q ss_conf ----7-------8726414885432243669999779976773654356544678-826888889899999999874953
Q gi|254781024|r 70 ----L-------PRWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNK-EHYIVSLGQVCRWLKNKAEALGVE 137 (554)
Q Consensus 70 ----~-------Pd~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~-g~yiv~r~~fd~~L~~~Ae~~Gve 137 (554)
+ -||.+..+.++........+. ..+.+... +.+..+...... ......-..+-+.|.+.+++.|++
T Consensus 79 l~~~~~~~s~~~~dwl~~~G~~~~~~~~~~~~~-~~~~g~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~ 156 (401)
T pfam00890 79 YVEAFVEAAPEAVDWLEALGVPFSRSTEDGHID-LRPLGGLS-ATWRTPHDVADRRRGTLGTGHALLARLLEGALKRGID 156 (401)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCC-CCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 999999867999999998399777567787111-33566666-6502103545445567888999999999999976998
Q ss_pred ECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEE-EEEEECCCCCHHHHHH
Q ss_conf 30682243477627762014541243244346657875630267742-5786066443255421
Q gi|254781024|r 138 IYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSK-YMLVGEGACGSLTRQL 200 (554)
Q Consensus 138 i~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak-~vI~AdG~~s~lak~l 200 (554)
++.++++++++. ++|+|+|+.....- ...-..++|+ -||+|.|-.+.....+
T Consensus 157 i~~~t~~~~Li~-d~g~V~Gv~~~~~~----------~g~~~~i~A~kaVIlAtGGf~~n~~~~ 209 (401)
T pfam00890 157 FQPRHPADDLIV-EDGRVTGVVVENRR----------NGREVRIRAIAGVLLATGGFGRNAELL 209 (401)
T ss_pred EEECCEEEEEEE-ECCEEEEEEEEECC----------CCEEEEEEEEEEEEECCCCHHHHHHHH
T ss_conf 993869615698-28858999999678----------980999995106799668813448876
No 95
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.49 E-value=2.1e-11 Score=98.09 Aligned_cols=39 Identities=38% Similarity=0.599 Sum_probs=35.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 79998976899999999980899739999786778986402
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILS 57 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~s 57 (554)
|||||||.|||+||+.|++.| ++|+|||+...+|..+-+
T Consensus 1 VvVIGaGlaGL~AA~~L~~~G--~~V~VlEa~~r~GGR~~t 39 (430)
T TIGR03467 1 VVIIGGGLAGLSAAVELARAG--VRVTLFEARPRLGGRARS 39 (430)
T ss_pred CEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCEEE
T ss_conf 299878689999999998789--988999489988167678
No 96
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.48 E-value=3.5e-11 Score=96.59 Aligned_cols=164 Identities=20% Similarity=0.307 Sum_probs=97.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC--CCCE---ECH---------------------HHH
Q ss_conf 36477999897689999999998089973999978677898640--2740---333---------------------678
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL--SGAI---IDP---------------------IGI 66 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~--sG~v---l~p---------------------~aL 66 (554)
-||||||||+|.||++||+.+++. .+|+||+|....+.+.. .|++ +++ ..+
T Consensus 7 ~~~DVlVIGsG~AGl~AAi~a~~~---~~V~lv~K~~~~~g~s~~a~gGi~a~~~~~Ds~e~h~~Dt~~~G~gl~d~~lv 83 (535)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH---RKVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDEDAV 83 (535)
T ss_pred CCCCEEEECCCHHHHHHHHHHCCC---CCEEEEECCCCCCCCHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCCCHHHH
T ss_conf 628989999539999999974038---98899978899997278870853885299999999999999953898899999
Q ss_pred HHHC---C---CHHHHCCCCCCCEEEEE--EEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHC-CCE
Q ss_conf 8867---8---72641488543224366--9999779976773654356544678826888889899999999874-953
Q gi|254781024|r 67 DSLL---P---RWREDKGHPFHTVVKRD--LYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEAL-GVE 137 (554)
Q Consensus 67 ~eL~---P---d~~e~~g~pl~~~v~~d--~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~-Gve 137 (554)
+.|. | +|.+..|.|+.+..... .-++++..+..+.+ +..+. +. ..-..+-+-|.+++.+. |++
T Consensus 84 ~~l~~~a~~~i~~L~~~Gv~f~~~~~~~~~~~~~~~r~gGhs~~-----R~~~~-~d--~tG~~i~~~L~~~~~~~~~i~ 155 (535)
T PRK09077 84 RFIAENAREAVQWLIDQGVPFDTDEQPNGEEGYHLTREGGHSHR-----RILHA-AD--ATGKAVQTTLVERARNHPNIT 155 (535)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CEECC-CC--CCHHHHHHHHHHHHHHCCCCE
T ss_conf 99999999999999984995652677654422100135786667-----55215-89--868999999999997089978
Q ss_pred ECCCCEEEEEEECC-----CCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHH
Q ss_conf 30682243477627-----7620145412432443466578756302677425786066443255
Q gi|254781024|r 138 IYCGFTATEIYYGK-----KGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLT 197 (554)
Q Consensus 138 i~~g~~v~~i~~~e-----~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~la 197 (554)
++..+.+.+++.++ +++++|+..-+... ..-..|+||.||.|.|-.+.+-
T Consensus 156 ~~~~~~~~~Li~~~~~~~~~~~v~Ga~~~d~~~----------g~~~~i~AkaVILATGG~g~ly 210 (535)
T PRK09077 156 VLERHNAIDLITSDKLGLPGRRVVGAYVWNRNK----------ERVETIRAKFVVLATGGASKVY 210 (535)
T ss_pred EEECEEEEEEEEECCCCCCCCEEEEEEEEECCC----------CCEEEEEECEEEEECCCCCCCC
T ss_conf 995207889998424456698799899997789----------9389997076999469985453
No 97
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.48 E-value=1.3e-12 Score=106.56 Aligned_cols=71 Identities=15% Similarity=0.260 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEE-EEEEECCCCCHHHHHH
Q ss_conf 989999999987495330682243477627762014541243244346657875630267742-5786066443255421
Q gi|254781024|r 122 QVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSK-YMLVGEGACGSLTRQL 200 (554)
Q Consensus 122 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak-~vI~AdG~~s~lak~l 200 (554)
.+...|...+++.|++|+..+++++++. ++|+|+||+..+....+++ ....++|+ -||+|.|-.+.=...+
T Consensus 207 ~l~~~l~~~~~~~gv~i~~~t~~~~Li~-~~g~V~GV~~~~~~~~~~g-------~~~~i~A~kgVVLATGGf~~N~em~ 278 (560)
T PRK07843 207 ALIAPLRIGLRRAGVPVLLNTALTDLYV-EDGVVRGVYVRDTHAAESG-------EPQLIRARRGVILASGGFEHNEQMR 278 (560)
T ss_pred HHHHHHHHHHHHCCCEEEECCCHHHEEE-CCCEEEEEEEECCCCCCCC-------CEEEEECCCEEEEECCCCCCCHHHH
T ss_conf 9999999999976987997573230365-1987999999504555578-------4699960563899379854299999
No 98
>PRK12839 hypothetical protein; Provisional
Probab=99.48 E-value=1.9e-12 Score=105.34 Aligned_cols=63 Identities=14% Similarity=0.203 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE-EEEEEECCCCCHH
Q ss_conf 98999999998749533068224347762776201454124324434665787563026774-2578606644325
Q gi|254781024|r 122 QVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLS-KYMLVGEGACGSL 196 (554)
Q Consensus 122 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~A-k~vI~AdG~~s~l 196 (554)
.+-.-|...+++.|++++..+++++++.+++|+|+||+....+. ...++| |-||+|.|-.+.=
T Consensus 217 al~~~l~~~~~~~Gv~i~~~t~~~~Li~d~~G~V~GV~~~~~~g------------~~~i~a~kgVVLATGGF~~N 280 (574)
T PRK12839 217 ALTGRLLTSADDLGVDLRVSTSAVSLNTDNAGRVTGVKVQTPDG------------LVDFEATRGVVLATGGFPND 280 (574)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEECCCCCEEEEEEEECCC------------EEEEEECCEEEECCCCCCCC
T ss_conf 99999999999829869966614798761798488899981795------------19998323589903884339
No 99
>PRK11728 hypothetical protein; Provisional
Probab=99.46 E-value=1.4e-12 Score=106.43 Aligned_cols=171 Identities=22% Similarity=0.250 Sum_probs=107.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC---CEE------CHHHH--------HHHCCCHHH
Q ss_conf 3647799989768999999999808997399997867789864027---403------33678--------886787264
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSG---AII------DPIGI--------DSLLPRWRE 75 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG---~vl------~p~aL--------~eL~Pd~~e 75 (554)
|-|||||||||-+|++.|+.|++...+.+|+||||...++.|. || +++ .|..| ++++.+|.+
T Consensus 1 m~yDvvIIGgGIvG~siA~~Ls~~~~~~~V~vlEke~~~g~~~-S~rNSgviHaG~~y~p~slka~l~~~g~~l~~~~~~ 79 (400)
T PRK11728 1 MMYDFVIIGGGIVGLSTAMQLQDRYPGARIALLEKESGPARHQ-TGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCD 79 (400)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC-CCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9530999996799999999999559998399996899975633-532423215643589999999999999999999999
Q ss_pred HCCCCCCCEE------EEE-----------------EEEEECCCCCEE-CCCCCCCCCCCCCCCEEEEHHHHHHHHHHHH
Q ss_conf 1488543224------366-----------------999977997677-3654356544678826888889899999999
Q gi|254781024|r 76 DKGHPFHTVV------KRD-----------------LYWFLNAQRSIQ-IPHFCLPDFMDNKEHYIVSLGQVCRWLKNKA 131 (554)
Q Consensus 76 ~~g~pl~~~v------~~d-----------------~~~~l~~~~~~~-~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~A 131 (554)
..+.|..+.- +++ .+.+++.+...+ .|+...-........-+++-..+.+.|++.|
T Consensus 80 ~~~i~~~~~GkliVA~~~~e~~~L~~l~~~~~~ngv~~~~l~~~ei~~~eP~v~~~~al~~p~tgivD~~~l~~al~~~a 159 (400)
T PRK11728 80 QHGIPYEVCGKLLVATSELELERMEALYERAAANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELI 159 (400)
T ss_pred HCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCCCEEECCCCEEECHHHHHHHHHHHH
T ss_conf 85999211686999779999999999999998569862896799999868865432359768772778999999999999
Q ss_pred HHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCH-HHHHHH
Q ss_conf 8749533068224347762776201454124324434665787563026774257860664432-554211
Q gi|254781024|r 132 EALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGS-LTRQLI 201 (554)
Q Consensus 132 e~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~-lak~l~ 201 (554)
++.|++++.++.|+.+....++. .+.|.+ +.+++|++||-|-|..+. ++++++
T Consensus 160 ~~~G~~i~~~~~V~~i~~~~~~~--~v~t~~---------------~~~i~a~~vINaAGl~Ad~IA~~~G 213 (400)
T PRK11728 160 QARGGEIRLGAEVTALDEHANGV--VVRTSQ---------------GGEFEARTLVNCAGLMSDRLAKMLG 213 (400)
T ss_pred HHCCCEEEECCEEEEEEEECCEE--EEEECC---------------CCEEEEEEEEECCCHHHHHHHHHCC
T ss_conf 97898999278898999979999--999889---------------9889971899866652899999709
No 100
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.46 E-value=1.4e-12 Score=106.32 Aligned_cols=112 Identities=23% Similarity=0.368 Sum_probs=78.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEEE
Q ss_conf 64779998976899999999980899739999786778986402740333678886787264148854322436699997
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFL 93 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~l 93 (554)
.|||+||||||||+|||++++|.| ++++|+++. +|.. +..+..+ +
T Consensus 212 ~YDviIIGgGPAGlsAAIYaaR~g--l~t~vi~~~--~GGq-----v~~t~~I---------------e----------- 256 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKG--LRTAMVAER--IGGQ-----VKDTVGI---------------E----------- 256 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECC--CCCC-----CEECCCE---------------E-----------
T ss_conf 888899896789999999999779--976999248--7753-----1303460---------------0-----------
Q ss_pred CCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 79976773654356544678826888889899999999874953306822434776277620145412432443466578
Q gi|254781024|r 94 NAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGK 173 (554)
Q Consensus 94 ~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~ 173 (554)
.+|. +. -++-.+|-.-+.++|++.|++++....|..+...++ ...+.+.+
T Consensus 257 ------NypG------~~-----~i~G~eL~~~~~~qa~~~gv~~~~~~~v~~i~~~~~--~~~v~~~~----------- 306 (515)
T TIGR03140 257 ------NLIS------VP-----YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDG--LIVVTLES----------- 306 (515)
T ss_pred ------ECCC------CC-----CCCHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCC--CEEEEECC-----------
T ss_conf ------4489------87-----775799999999999974968991336999972798--18999879-----------
Q ss_pred CCCCEEEEEEEEEEEECCCCC
Q ss_conf 756302677425786066443
Q gi|254781024|r 174 HYIAPMLLLSKYMLVGEGACG 194 (554)
Q Consensus 174 ~~~~g~~i~Ak~vI~AdG~~s 194 (554)
|..++||.||.|.|++-
T Consensus 307 ----g~~~~aktVIiATGa~~ 323 (515)
T TIGR03140 307 ----GEVLKAKSVIVATGARW 323 (515)
T ss_pred ----CCEEEECEEEECCCCCC
T ss_conf ----98999397999569873
No 101
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.46 E-value=1.2e-11 Score=99.76 Aligned_cols=172 Identities=17% Similarity=0.197 Sum_probs=101.5
Q ss_pred HHCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC------CCCCCCCE----ECHH----H------HHHH
Q ss_conf 0103647799989768999999999808997399997867789------86402740----3336----7------8886
Q gi|254781024|r 10 KDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG------AHILSGAI----IDPI----G------IDSL 69 (554)
Q Consensus 10 re~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG------~~i~sG~v----l~p~----a------L~eL 69 (554)
|+..||||||||||-.|++.|..|++.| ++|+||||+.+.. ++++-|++ -++. + |.++
T Consensus 1 ~~~~e~DVvIIGgGi~Ga~iArdla~rG--l~v~LvEk~D~a~GTSs~ss~LiHgG~RY~~~d~~~are~l~e~~~l~~~ 78 (545)
T PRK11101 1 RDSQETDVIIIGGGATGAGIARDCALRG--LRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRI 78 (545)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9986176899998689999999998679--93999989976162001201271225231233709999999989999985
Q ss_pred CCCHHHHCCCCCCCEEEEEEEEE-----------------ECCCCCEECCCCCCCCCCCC-CCC-----EEEEHHHHHHH
Q ss_conf 78726414885432243669999-----------------77997677365435654467-882-----68888898999
Q gi|254781024|r 70 LPRWREDKGHPFHTVVKRDLYWF-----------------LNAQRSIQIPHFCLPDFMDN-KEH-----YIVSLGQVCRW 126 (554)
Q Consensus 70 ~Pd~~e~~g~pl~~~v~~d~~~~-----------------l~~~~~~~~p~~~~p~~~~~-~g~-----yiv~r~~fd~~ 126 (554)
-|.+.+..+..+ ....++...+ ++......+ .|..-++ .++ ..++=.++.--
T Consensus 79 Aphlv~~~g~L~-v~~~~~~~~~~~~~~~~~~~~gv~~~~i~~~e~~~~----eP~l~~~l~ga~~~~Dg~vdp~rL~ia 153 (545)
T PRK11101 79 ARHCVEPTDGLF-ITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALIL----EPAVNPALIGAVKVPDGTVDPFRLTAA 153 (545)
T ss_pred CHHHCCCCCCEE-EEECCHHHHHHHHHHHHHHHCCCCCEEECHHHHHHH----CCCCCHHCEEEEEECCEEECHHHHHHH
T ss_conf 916403068638-971502267899999999976998477689999975----868883020799955227873899999
Q ss_pred HHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHH
Q ss_conf 9999987495330682243477627762014541243244346657875630267742578606644325542
Q gi|254781024|r 127 LKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQ 199 (554)
Q Consensus 127 L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~ 199 (554)
+++.|.+.||+++..+.|++++. +++++.||++.+... ....+++||+||=|.|+.+---..
T Consensus 154 ~a~~A~~~GA~i~~~t~V~~i~~-~~g~v~gv~~~d~~t----------g~~~~i~ak~VINAAG~wad~I~~ 215 (545)
T PRK11101 154 NMLDAKEHGARILTAHEVTGLIR-EGDTVCGVRVRDHLT----------GETQEIHAPVVVNAAGIWGQHIAE 215 (545)
T ss_pred HHHHHHHCCCCEECCCEEEEEEE-ECCEEEEEEEEECCC----------CCEEEEEEEEEEECCCCCHHHHHH
T ss_conf 99999974820202647789994-188799999998678----------968999856999766754677876
No 102
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.46 E-value=3.3e-13 Score=110.68 Aligned_cols=160 Identities=21% Similarity=0.265 Sum_probs=93.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC-CCCE----ECHHHHHHH---CCCHHHHCCCCCCCE
Q ss_conf 36477999897689999999998089973999978677898640-2740----333678886---787264148854322
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL-SGAI----IDPIGIDSL---LPRWREDKGHPFHTV 84 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~-sG~v----l~p~aL~eL---~Pd~~e~~g~pl~~~ 84 (554)
|.||||||||||||+.||+.+++.| .+|+|||+.+-+|-|++ ||+. ....+.+++ +|.-.......+.+.
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G--~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~f 79 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAG--RRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARF 79 (408)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHC
T ss_conf 7421899888788999999886469--87999805864221368537887433265058999975898206778898727
Q ss_pred EEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCC
Q ss_conf 43669999779976773654356544678826888889899999999874953306822434776277620145412432
Q gi|254781024|r 85 VKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKG 164 (554)
Q Consensus 85 v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G 164 (554)
-.+|-+.|. +...+.+-....-+.+.. .-+-....+.|..+.++.||++++.+++.++..++ ....+.+.+
T Consensus 80 t~~d~i~~~-e~~Gi~~~e~~~Gr~Fp~----sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~-- 150 (408)
T COG2081 80 TPEDFIDWV-EGLGIALKEEDLGRMFPD----SDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSS-- 150 (408)
T ss_pred CHHHHHHHH-HHCCCEEEECCCCEECCC----CCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEECC--CEEEEECCC--
T ss_conf 989999999-865971577468525578----66668999999999997595898146477676338--558998599--
Q ss_pred CCCCCCCCCCCCCEEEEEEEEEEEECCCCCHH
Q ss_conf 44346657875630267742578606644325
Q gi|254781024|r 165 KNYDGTQGKHYIAPMLLLSKYMLVGEGACGSL 196 (554)
Q Consensus 165 ~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~l 196 (554)
+.+++|+-+|.|.|-.|.-
T Consensus 151 -------------g~~i~~d~lilAtGG~S~P 169 (408)
T COG2081 151 -------------GETVKCDSLILATGGKSWP 169 (408)
T ss_pred -------------CCEEECCEEEEECCCCCCC
T ss_conf -------------9889804899922886778
No 103
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.45 E-value=5.2e-11 Score=95.39 Aligned_cols=164 Identities=24% Similarity=0.225 Sum_probs=91.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC---CCEECH--H---HHHHHCC-------------
Q ss_conf 364779998976899999999980899739999786778986402---740333--6---7888678-------------
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILS---GAIIDP--I---GIDSLLP------------- 71 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~s---G~vl~p--~---aL~eL~P------------- 71 (554)
.+.||+|||||-+|+++|++|+++..+++|+|||+. .+|+. -| |+.+.. . .+..++.
T Consensus 23 ~~aDVvIIGgG~tGLstA~~L~~~~pg~~VvvLEa~-~iG~G-ASGRNgG~~~~~~~~~~~l~~~~G~~~a~~l~~~~~~ 100 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEAD-LCGAG-ASGRNGGCMLTWSTKFFTLKRLFGEAEAARLVKASEQ 100 (460)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECC-CCCCC-CCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 755199999439999999999974899988999489-61565-5665445156777644789987589999999999999
Q ss_pred ------CHHHHCCCCCCCEEEEEEEEEE-CCCCC-------------EECCCC--C----------CCC---CCCCCCCE
Q ss_conf ------7264148854322436699997-79976-------------773654--3----------565---44678826
Q gi|254781024|r 72 ------RWREDKGHPFHTVVKRDLYWFL-NAQRS-------------IQIPHF--C----------LPD---FMDNKEHY 116 (554)
Q Consensus 72 ------d~~e~~g~pl~~~v~~d~~~~l-~~~~~-------------~~~p~~--~----------~p~---~~~~~g~y 116 (554)
++.+..+.. .........++ +.... .-+..+ . .+. .+......
T Consensus 101 a~~~v~~~i~~~gId--cd~~~~G~l~~A~~~~~~~~l~~~~~~~~~~G~~~~~~l~~~e~~~~~gs~~~~~g~~~~~~~ 178 (460)
T TIGR03329 101 AVLEIAAFCEQHNID--AQLRLDGTLYTATNPAQVGSMDPVVDALERRGINSWQRLSEGELARRTGSARHLEGFYSPVAA 178 (460)
T ss_pred HHHHHHHHHHHHCCC--CCEEECCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHCCCHHCCEEEECCCC
T ss_conf 999999988872988--552207889997299999999999999997599400564798999886961001249706862
Q ss_pred EEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCC-H
Q ss_conf 888889899999999874953306822434776277620145412432443466578756302677425786066443-2
Q gi|254781024|r 117 IVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACG-S 195 (554)
Q Consensus 117 iv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s-~ 195 (554)
.+.=.+|.+-|++.|++.||.|+.++.|+++. .+....|.|.. ..|+|+.||.|.++.. .
T Consensus 179 ~~~P~kl~~gLa~~a~~~Gv~i~e~t~V~~i~---~g~~~~v~T~~----------------G~I~A~~VV~ATnay~~~ 239 (460)
T TIGR03329 179 SVQPGLLVRGLRRVALELGVEIHENTPMTGLE---EGQPAVVRTPD----------------GQVTADKVVLALNAWMAS 239 (460)
T ss_pred EECHHHHHHHHHHHHHHCCCEEECCEEEEEEE---CCCCEEEEECC----------------CEEEEEEEEEEECCCCCC
T ss_conf 57699999999999873488077460579985---59954999279----------------789970699971555311
Q ss_pred HHHH
Q ss_conf 5542
Q gi|254781024|r 196 LTRQ 199 (554)
Q Consensus 196 lak~ 199 (554)
+...
T Consensus 240 l~~~ 243 (460)
T TIGR03329 240 HFPQ 243 (460)
T ss_pred CCCC
T ss_conf 2401
No 104
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.44 E-value=2.6e-12 Score=104.43 Aligned_cols=111 Identities=25% Similarity=0.399 Sum_probs=75.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEEEC
Q ss_conf 47799989768999999999808997399997867789864027403336788867872641488543224366999977
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFLN 94 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~l~ 94 (554)
||||||||||||++||++++|+| ++|+||||.. +|..+ ..+. .
T Consensus 5 YDvIIIGgGPAGlsAAIYaaRag--lktlvIEk~~-~GGqi-----~~t~-------------------~---------- 47 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAK--LDTLIIEKDD-FGGQI-----TITS-------------------E---------- 47 (555)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCC-CCCCC-----EECC-------------------C----------
T ss_conf 72999995688999999999789--9679996688-68655-----6368-------------------5----------
Q ss_pred CCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 99767736543565446788268888898999999998749533068224347762776201454124324434665787
Q gi|254781024|r 95 AQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKH 174 (554)
Q Consensus 95 ~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~ 174 (554)
-...|. +. -++-.++-.-+.++|+..|+++..+. |..+.. .+....|.|.+
T Consensus 48 ---VeNYPG------~~-----~isG~eL~~~m~~qA~~~Gve~~~~~-V~~i~~--~g~~k~V~t~~------------ 98 (555)
T TIGR03143 48 ---VVNYPG------IL-----NTTGPELMQEMRQQAQDFGVKFLQAE-VLDVDF--DGDIKTIKTAR------------ 98 (555)
T ss_pred ---EEECCC------CC-----CCCHHHHHHHHHHHHHHCCCEEEEEE-EEEEEC--CCCCEEEEECC------------
T ss_conf ---687888------77-----98689999999999997796999656-999973--79958999889------------
Q ss_pred CCCEEEEEEEEEEEECCCCCH
Q ss_conf 563026774257860664432
Q gi|254781024|r 175 YIAPMLLLSKYMLVGEGACGS 195 (554)
Q Consensus 175 ~~~g~~i~Ak~vI~AdG~~s~ 195 (554)
.+++||.||.|.|+...
T Consensus 99 ----g~~~ak~VIIATGa~pr 115 (555)
T TIGR03143 99 ----GDYKTLAVLIATGASPR 115 (555)
T ss_pred ----CEEEECEEEECCCCCCC
T ss_conf ----78996979999999714
No 105
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.41 E-value=1.6e-10 Score=92.01 Aligned_cols=162 Identities=22% Similarity=0.350 Sum_probs=99.9
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC-----CEEC-HH-----HHHHHC----------
Q ss_conf 03647799989768999999999808997399997867789864027-----4033-36-----788867----------
Q gi|254781024|r 12 VFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSG-----AIID-PI-----GIDSLL---------- 70 (554)
Q Consensus 12 ~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG-----~vl~-p~-----aL~eL~---------- 70 (554)
.++|||||||+|.||+.||+.+++.| ++|+||||....|+|++++ +.+. +. ..++.+
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g--~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l 81 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAG--LKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGL 81 (562)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 21169899878488899999999669--9579997236889853214565302146665456899899999998743676
Q ss_pred ----------------CCHHHHCCCCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEH--HHHHHHHHHHHH
Q ss_conf ----------------87264148854322436699997799767736543565446788268888--898999999998
Q gi|254781024|r 71 ----------------PRWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSL--GQVCRWLKNKAE 132 (554)
Q Consensus 71 ----------------Pd~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r--~~fd~~L~~~Ae 132 (554)
.+|.+..+.|+.+. .++.+....+. ....+...|.-++ ..+-.+|.+++.
T Consensus 82 ~dqd~i~~~~~~sp~~v~~Le~~G~~f~r~----------~~G~~~~r~fg--g~~~~rt~~~~~~tG~~ll~~L~~~~~ 149 (562)
T COG1053 82 GDQDAVEAFADEAPEAVDELEKWGVPFSRT----------EDGRIYQRRFG--GHSKPRTCFAADKTGHELLHTLYEQLL 149 (562)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCC----------CCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 789999999986379999999808975447----------87660023468--888876322566675899999999987
Q ss_pred H-CCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHH
Q ss_conf 7-4953306822434776277620145412432443466578756302677425786066443255
Q gi|254781024|r 133 A-LGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLT 197 (554)
Q Consensus 133 ~-~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~la 197 (554)
. .+.+++....+.+++.++++.+.|+..-+.-. ..-..++||-||.|.|-.+.+-
T Consensus 150 ~~~~~~~~~~~~~~~l~~~~~~~v~Gvv~~~~~~----------g~~~~~~akavilaTGG~g~~~ 205 (562)
T COG1053 150 KFSGIEIFDEYFVLDLLVDDGGGVAGVVARDLRT----------GELYVFRAKAVILATGGAGRLY 205 (562)
T ss_pred HHCCCHHHCCCEEHHHEECCCCCEEEEEEEECCC----------CCEEEEECCCEEEECCCCEEEE
T ss_conf 6313111100210212231798578899995478----------8489981464899338744777
No 106
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.39 E-value=4.4e-12 Score=102.90 Aligned_cols=193 Identities=19% Similarity=0.281 Sum_probs=102.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC-CC-CCEEC-H---H------------HHH--------
Q ss_conf 647799989768999999999808997399997867789864-02-74033-3---6------------788--------
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI-LS-GAIID-P---I------------GID-------- 67 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i-~s-G~vl~-p---~------------aL~-------- 67 (554)
|+||||||+| ||++||+.+++.| ++|+||||...+|.-. .| |+.+. | . .++
T Consensus 9 e~DVVVvG~G-aGl~AA~~Aa~~G--a~VivlEK~~~~GG~sa~sgGg~~~~~~~~~q~~~Gi~Ds~e~~~~~~~~~~~~ 85 (515)
T PRK12837 9 EVDVVVAGSG-GGVAGAYTAAREG--LSVALVEATDKFGGTTAYSGGGGMWFPCNPVLQRAGTDDTIEDALTYYHAVVGD 85 (515)
T ss_pred CCCEEEECHH-HHHHHHHHHHHCC--CCEEEEECCCCCCCHHHHCCCCCEEECCCHHHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf 7397998906-9999999999879--988999788988818874588766507999999758878999999999987278
Q ss_pred ----HHC----------CCHHHHCCCCCCCEEEEEEEE---EECCC--------CC---EECCCCCCCCCCC--------
Q ss_conf ----867----------872641488543224366999---97799--------76---7736543565446--------
Q gi|254781024|r 68 ----SLL----------PRWREDKGHPFHTVVKRDLYW---FLNAQ--------RS---IQIPHFCLPDFMD-------- 111 (554)
Q Consensus 68 ----eL~----------Pd~~e~~g~pl~~~v~~d~~~---~l~~~--------~~---~~~p~~~~p~~~~-------- 111 (554)
+|+ -+|.+... .+.-..+. +.... +. ..+|....+....
T Consensus 86 ~~~~~l~~~~~~~~~~~i~wL~~~~-----~~~f~~~~~~dy~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~ 160 (515)
T PRK12837 86 RTPRELQETYVRGGAPLIEYLEQDE-----HFQFAELPWPDYFGKAPKARADGQRHIAPKPLPVAAAGELREQIRGPLDT 160 (515)
T ss_pred CCHHHHHHHHHHCCHHHHHHHHHCC-----CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCH
T ss_conf 6739999999972799999998575-----85145546654357787775678521256566601130145430476543
Q ss_pred -C----CCC-EEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE-E
Q ss_conf -7----882-68888898999999998749533068224347762776201454124324434665787563026774-2
Q gi|254781024|r 112 -N----KEH-YIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLS-K 184 (554)
Q Consensus 112 -~----~g~-yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~A-k 184 (554)
. ... +.--+..+.+.|...++..|++++..+++++++. ++|+|+||.....|. ...++| |
T Consensus 161 ~~~~~~~~~~~~gG~~l~~~~l~~~~~~~gv~i~~~t~~~~Li~-d~g~V~Gv~a~~~g~------------~~~i~A~k 227 (515)
T PRK12837 161 DRLGAPPPDYLTGGRALIGRFLAALARFPNARLRLNTPLVELVV-EDGRVVGAVVERDGE------------RVRVRARR 227 (515)
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCEEEEEEE-CCCEEEEEEEEECCC------------EEEEEECC
T ss_conf 33068763221466999999999987616966992673378884-298599999986991------------79997246
Q ss_pred EEEEECCCCCHHHHHHHHHCCCC-----CCCCHHHHHHHHHHHHHHCCC
Q ss_conf 57860664432554211224899-----888898998898888751656
Q gi|254781024|r 185 YMLVGEGACGSLTRQLIERYSLM-----DGRQPQKFGLGIKELWKIKPQ 228 (554)
Q Consensus 185 ~vI~AdG~~s~lak~l~~~~~l~-----~~~~p~~~~~gvke~~ei~~~ 228 (554)
-||+|.|-.+.=. .+..++... ....+..-+-|++...++-..
T Consensus 228 gVILAtGGf~~N~-em~~~~~~~~~~~~~~~~~~~tGdg~~ma~~~Ga~ 275 (515)
T PRK12837 228 GVLLAAGGFEQND-DMRERYGVPGSARDTMGGPGNTGLAHRAGIAVGAD 275 (515)
T ss_pred EEEECCCCCCCCH-HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 5899068965489-99997089755566558988764999999981997
No 107
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase; InterPro: IPR005982 Reactive oxygen species (ROS) are known mediators of intracellular signaling cascades. Excessive production of ROS may, however, lead to oxidative stress, loss of cell function, and ultimately apoptosis or necrosis. A balance between oxidant and antioxidant intracellular systems is hence vital for cell function, regulation, and adaptation to diverse growth conditions. Thioredoxin reductase in conjunction with thioredoxin is a ubiquitous oxidoreductase system with antioxidant and redox regulatory roles. Thioredoxin reductase (1.8.1.9 from EC) reduces oxidised thioredoxin in the presence of NADPH. Reduced thioredoxin serves as an electron donor for thioredoxin peroxidase which consequently reduces H_2O_2 to H_2O. In mammals, extracellular forms of Trx also have cytokine-like effects. Mammalian TrxR has a highly reactive active site selenocysteine residue resulting in a profound reductive capacity, reducing several substrates in addition to Trx .; GO: 0004791 thioredoxin-disulfide reductase activity, 0019430 removal of superoxide radicals, 0005737 cytoplasm.
Probab=99.38 E-value=4.1e-12 Score=103.07 Aligned_cols=115 Identities=30% Similarity=0.492 Sum_probs=82.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEEEC
Q ss_conf 47799989768999999999808997399997867789864027403336788867872641488543224366999977
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFLN 94 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~l~ 94 (554)
||||||||||||+|||++.+|.+ |+.++||+.. || .+|+=|... +
T Consensus 1 ~DviIIGaGPAGlTAAIYa~Ra~--l~~l~~eg~~-~G---~aGGql~~T------------------~----------- 45 (321)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARAN--LKTLLIEGME-PG---IAGGQLTTT------------------T----------- 45 (321)
T ss_pred CCEEEECCCHHHHHHHHHHHHHC--CEEEEEECCC-CC---CCCCCCCCC------------------C-----------
T ss_conf 92899847867888999988746--7278983577-77---455533322------------------0-----------
Q ss_pred CCCCEECCCCCCCCCCCCCCCE--EEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCC---CCEEEEEECCCCCCCCC
Q ss_conf 9976773654356544678826--888889899999999874953306822434776277---62014541243244346
Q gi|254781024|r 95 AQRSIQIPHFCLPDFMDNKEHY--IVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKK---GEALGILTGEKGKNYDG 169 (554)
Q Consensus 95 ~~~~~~~p~~~~p~~~~~~g~y--iv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~---g~vvgv~t~~~G~~k~~ 169 (554)
.+ .|+++| .++=.+|-.-+.+||++.|++++.|..|..+...++ ...-.+.|.
T Consensus 46 -----~v---------ENYPGf~e~i~G~~L~~~M~~Qa~~fG~~~~~G~~v~~v~~~~~~yE~~~F~~~~~-------- 103 (321)
T TIGR01292 46 -----EV---------ENYPGFPEGISGPELMEKMKEQAKKFGAEIIYGEEVIRVDKSDRAYESDPFKVKTG-------- 103 (321)
T ss_pred -----EE---------ECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCEEEEEECCCCCCCCCEEEEEEC--------
T ss_conf -----65---------13686888766288999999999870673662670568633788436610389717--------
Q ss_pred CCCCCCCCEEEEEEEEEEEECCCCCH
Q ss_conf 65787563026774257860664432
Q gi|254781024|r 170 TQGKHYIAPMLLLSKYMLVGEGACGS 195 (554)
Q Consensus 170 ~~~~~~~~g~~i~Ak~vI~AdG~~s~ 195 (554)
.+++||-||.|.|+...
T Consensus 104 ---------~~y~a~avIiAtGa~~r 120 (321)
T TIGR01292 104 ---------KEYTAKAVIIATGAEAR 120 (321)
T ss_pred ---------CEEEEEEEEEECCCHHH
T ss_conf ---------56886589991387154
No 108
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.37 E-value=1.2e-11 Score=99.79 Aligned_cols=158 Identities=20% Similarity=0.274 Sum_probs=96.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC--CCCEE---C---------------------HHHHH
Q ss_conf 6477999897689999999998089973999978677898640--27403---3---------------------36788
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL--SGAII---D---------------------PIGID 67 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~--sG~vl---~---------------------p~aL~ 67 (554)
||||||||+|.||++||+.+++ + ++|+||+|....+++.. .|++- . +..++
T Consensus 10 ~yDVlVIGsG~AGl~AAi~~~~-~--~~V~li~K~~~~~g~s~~a~GGi~a~~~~~Ds~e~h~~Dt~kaG~gl~d~~~v~ 86 (556)
T PRK07395 10 QFDVLVVGSGAAGLYAALCLPS-H--YRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAVR 86 (556)
T ss_pred CCCEEEECCCHHHHHHHHHHCC-C--CCEEEEECCCCCCCHHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 5978999963999999997235-9--988999899999962667636051727999999999999999558888899999
Q ss_pred HHC---C---CHHHHCCCCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCC-CEECC
Q ss_conf 867---8---7264148854322436699997799767736543565446788268888898999999998749-53306
Q gi|254781024|r 68 SLL---P---RWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALG-VEIYC 140 (554)
Q Consensus 68 eL~---P---d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~G-vei~~ 140 (554)
.|. | +|.+..|.|+.+. .+.+. ++..+..+. |+..+. +. ..-..+-+.|.+++.+.+ ++++.
T Consensus 87 ~l~~~a~~~i~~L~~~Gv~f~r~--~~~~~-~~~~gghs~-----~R~~~~-~d--~tG~~i~~~L~~~~~~~~~I~i~~ 155 (556)
T PRK07395 87 FLVEQAPEAIASLVELGVAFDRH--GQHLA-LTLEAAHSR-----PRVLHA-AD--TTGRAIVTTLTEQVLERPNIEIIS 155 (556)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEC--CCCEE-EEECCCCCC-----CCCCCC-CC--CCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999999999769970557--99440-012168666-----612445-77--755899999999999679956988
Q ss_pred CCEEEEEEEC-CCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHH
Q ss_conf 8224347762-77620145412432443466578756302677425786066443255
Q gi|254781024|r 141 GFTATEIYYG-KKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLT 197 (554)
Q Consensus 141 g~~v~~i~~~-e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~la 197 (554)
.+.+.+++.+ ++|+++|+.....| .-..|+||.||.|.|-.+.+-
T Consensus 156 ~~~~~~Ll~~~~~g~v~Gv~~~~~g------------~~~~i~AkaVILATGG~g~ly 201 (556)
T PRK07395 156 QALALDLWLEPETGRCQGISLLYQG------------QITWLRAGAVILATGGGGQVF 201 (556)
T ss_pred EEEEEEEEEECCCCEEEEEEEEECC------------CEEEEECCEEEECCCCCCCCC
T ss_conf 8999999995589879999999899------------699997898998999871126
No 109
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.37 E-value=5.4e-12 Score=102.26 Aligned_cols=63 Identities=11% Similarity=0.201 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEE-EEEEECCCCCHHH
Q ss_conf 989999999987495330682243477627762014541243244346657875630267742-5786066443255
Q gi|254781024|r 122 QVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSK-YMLVGEGACGSLT 197 (554)
Q Consensus 122 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak-~vI~AdG~~s~la 197 (554)
.+..-|...+++.|++|+..+++++++. ++|+|+||.....|. ...++|+ -||+|.|-.+.=.
T Consensus 218 ~l~~~l~~~~~~~gV~i~~~t~~~~Li~-d~grV~Gv~~~~~g~------------~~~i~A~k~VILAtGGF~~N~ 281 (566)
T PRK12845 218 ALAAGLFAGVLRAGIPIWTETSLVRLTD-DGGRVTGAVVDHRGR------------EVTVTARRGVVLAAGGFDHDM 281 (566)
T ss_pred HHHHHHHHHHHHCCCCEEECCEEEEEEE-CCCEEEEEEEEECCC------------EEEEEECCEEEEECCCCCCCH
T ss_conf 8999999999975992782441488860-598589999998990------------799982435899058855699
No 110
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.36 E-value=1.2e-09 Score=85.90 Aligned_cols=41 Identities=39% Similarity=0.626 Sum_probs=37.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
Q ss_conf 77999897689999999998089973999978677898640
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL 56 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~ 56 (554)
.|+|||||-|||+||++|++.|.+.+|.|+|+...+|..+.
T Consensus 2 ~V~VIGaGiaGLsaA~~L~~~G~~~~VtvlEa~~r~GG~i~ 42 (452)
T PRK11883 2 RVAIIGGGISGLTAAYRLHKKGPDADITLLEASDRLGGKIQ 42 (452)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEE
T ss_conf 59999987899999999996497997899988998810388
No 111
>pfam01266 DAO FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Probab=99.36 E-value=1.1e-11 Score=100.22 Aligned_cols=156 Identities=25% Similarity=0.309 Sum_probs=93.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC--CCCCEECHH---------------HHHHHCCCHHHHCC
Q ss_conf 7799989768999999999808997399997867789864--027403336---------------78886787264148
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI--LSGAIIDPI---------------GIDSLLPRWREDKG 78 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i--~sG~vl~p~---------------aL~eL~Pd~~e~~g 78 (554)
||+|||||.+|+++|++|++.| ++|+||||+. ++... .+++.+.+. ++ +++++|.+..+
T Consensus 1 dv~IIGaGi~Gls~A~~La~~G--~~V~vie~~~-~~~gaS~~~~g~i~~~~~~~~~~~~~~l~~~s~-~~~~~l~~~~~ 76 (309)
T pfam01266 1 DVVVIGGGIVGLSTAYELARRG--LSVTLLERGD-LASGASGRNAGLLHPGLRKERAPLLARLALESR-DLWRELIEELG 76 (309)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEECCCC-CCCCCCHHHHCEECCCCCCCCHHHHHHHHHHHH-HHHHHHHHHCC
T ss_conf 9999992799999999999789--9599994999-887504240261645757786189999989999-99999987559
Q ss_pred CCCCCEEEEEEEEEEC-CCC-----------------CEE----------CCCCCCCCC---CCCCCCEEEEHHHHHHHH
Q ss_conf 8543224366999977-997-----------------677----------365435654---467882688888989999
Q gi|254781024|r 79 HPFHTVVKRDLYWFLN-AQR-----------------SIQ----------IPHFCLPDF---MDNKEHYIVSLGQVCRWL 127 (554)
Q Consensus 79 ~pl~~~v~~d~~~~l~-~~~-----------------~~~----------~p~~~~p~~---~~~~g~yiv~r~~fd~~L 127 (554)
.+ .........++. ... .++ .|.. .+.. ........++-.++.++|
T Consensus 77 ~~--~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~-~~~~~~a~~~~~~~~i~p~~~~~~l 153 (309)
T pfam01266 77 ID--CDFRRTGVLVLARDEAELDALRRLAAALRALGLPVELLDAEELRELEPGL-SPGIRGGLFYPDGGHVDPARLLRAL 153 (309)
T ss_pred CC--CCEEECCEEEEECCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCC-CCCCEEEEEECCCCEECCHHHHHHH
T ss_conf 87--56476468999469899999999999999739965994688877646656-7761489997578377512436799
Q ss_pred HHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHH
Q ss_conf 999987495330682243477627762014541243244346657875630267742578606644325
Q gi|254781024|r 128 KNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSL 196 (554)
Q Consensus 128 ~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~l 196 (554)
.+.+++.|++++.++.|+++..++++ +. |.|.+ + +++|+.||.|.|+.+.-
T Consensus 154 ~~~~~~~G~~i~~~~~V~~i~~~~~~-~~-v~t~~---------------g-~i~a~~VV~a~G~~s~~ 204 (309)
T pfam01266 154 ARAAEALGVEILEGTEVTGLEREGGG-VT-VETAD---------------G-EIRADKVVNAAGAWSDE 204 (309)
T ss_pred HHHHHHCCCEEECCCEEEEEEEECCE-EE-EEECC---------------C-EECCCEEEECCCHHHHH
T ss_conf 99998779699917689999998999-99-99899---------------7-08589999977742688
No 112
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.35 E-value=5.1e-10 Score=88.49 Aligned_cols=159 Identities=20% Similarity=0.301 Sum_probs=90.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC--CCCEE---CH------H---------------HHH
Q ss_conf 6477999897689999999998089973999978677898640--27403---33------6---------------788
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL--SGAII---DP------I---------------GID 67 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~--sG~vl---~p------~---------------aL~ 67 (554)
..||||||+|.||++||+.+++. .+|+||||....+++.. .|++- .+ + .++
T Consensus 3 ~~DVlVIGsG~AGl~AA~~~~~~---~~V~vv~K~~~~~~~s~~a~Ggi~a~~~~~Ds~e~~~~Dt~~aG~gl~d~~~v~ 79 (510)
T PRK08071 3 SADVIIIGSGIAALRVAKEICHE---KNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNEEAVR 79 (510)
T ss_pred CCCEEEECCCHHHHHHHHHHCCC---CCEEEEECCCCCCCCHHHHCCCCCEECCCCCCHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 79999999659999999983658---987999798999974256454431713899999999999999637888899999
Q ss_pred HHC---C---CHHHHCCCCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCC
Q ss_conf 867---8---7264148854322436699997799767736543565446788268888898999999998749533068
Q gi|254781024|r 68 SLL---P---RWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCG 141 (554)
Q Consensus 68 eL~---P---d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g 141 (554)
.|. | +|.+..|.|+.+. ++..+.+...+.-+. ++..+..+.. .-..+-+.|.+++. .+++++..
T Consensus 80 ~l~~~a~~~i~~L~~~Gv~f~~~--~~G~~~~~~~ggh~~-----~R~~~~~gd~--tG~~i~~~l~~~~~-~~i~i~~~ 149 (510)
T PRK08071 80 YLVEEGPKEIQELIENGMPFDGD--ETGPLHLGKEGAHRK-----RRILHAGGDA--TGKNLLEHLIQEVV-PHVTVVEQ 149 (510)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCC--CCCCCCCCCCCCCCC-----CCEEECCCCC--CHHHHHHHHHHHHC-CCCEEEEE
T ss_conf 99998999999999759965128--886451252775168-----6014217763--03899999999705-88189974
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHH
Q ss_conf 22434776277620145412432443466578756302677425786066443255
Q gi|254781024|r 142 FTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLT 197 (554)
Q Consensus 142 ~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~la 197 (554)
+.+.+++. ++|+++|+...+ +++ .-..++||.||.|.|-.+.+-
T Consensus 150 ~~~~~ll~-~dg~v~G~~~~~----~~g-------~~~~~~AkaVIlATGG~g~ly 193 (510)
T PRK08071 150 EMVIDLII-EDGRCIGVLTKD----SEG-------KLKRYYADYVVLASGGCGGLY 193 (510)
T ss_pred EEEEEEEE-ECCEEEEEEEEC----CCC-------CEEEEEECEEEECCCCCCEEE
T ss_conf 79888873-489089999992----899-------889998277998568863015
No 113
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.35 E-value=2.9e-10 Score=90.21 Aligned_cols=314 Identities=14% Similarity=0.128 Sum_probs=144.7
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC------CCCCCCCE-----ECHH----HHHH------HC
Q ss_conf 03647799989768999999999808997399997867789------86402740-----3336----7888------67
Q gi|254781024|r 12 VFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG------AHILSGAI-----IDPI----GIDS------LL 70 (554)
Q Consensus 12 ~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG------~~i~sG~v-----l~p~----aL~e------L~ 70 (554)
+-+|||+|||||-.|+.+|.-|+..| ++|+|+||+.|.. +|.+-|++ .+.. +|.| .-
T Consensus 4 ~e~~DvlVIGGGitGag~A~daa~RG--l~v~LvE~~DfasGTSsrSskLiHGGlRYLe~~~~~lV~e~l~ER~~l~~~A 81 (503)
T PRK13369 4 PEDYDLAVIGGGINGAGIARDAAGRG--LKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAAA 81 (503)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf 88378899996788899999999689--9499982687558444764226534166542066999999999999999848
Q ss_pred CCHHHHCCCCCCCEEEEEE-E-E----------EECCCCC------EECCC--CCCCCCCCC-CCCE-----EEEHHHHH
Q ss_conf 8726414885432243669-9-9----------9779976------77365--435654467-8826-----88888989
Q gi|254781024|r 71 PRWREDKGHPFHTVVKRDL-Y-W----------FLNAQRS------IQIPH--FCLPDFMDN-KEHY-----IVSLGQVC 124 (554)
Q Consensus 71 Pd~~e~~g~pl~~~v~~d~-~-~----------~l~~~~~------~~~p~--~~~p~~~~~-~g~y-----iv~r~~fd 124 (554)
|...+. .|+-.|..... . | ++..... ++... ...| ..++ .+++ .++=.+++
T Consensus 82 Phlv~p--l~~l~P~~~~~~~~~~~~~Gl~lYd~la~~~~~~~~~~~~~~~~~~~~p-l~~~l~~~~~y~D~~~ddaRl~ 158 (503)
T PRK13369 82 PHIIWP--MRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKKLPGTRTLDLRRDPEGAP-LKPPYRKGFEYSDCWVDDARLV 158 (503)
T ss_pred CCCCCC--CCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHCCC-CCHHCCEEEEEECCCCCHHHHH
T ss_conf 341244--7269996077555799997899998633866788410017656111067-4053556999966626579999
Q ss_pred HHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCC-CHHHHHHHHH
Q ss_conf 999999987495330682243477627762014541243244346657875630267742578606644-3255421122
Q gi|254781024|r 125 RWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGAC-GSLTRQLIER 203 (554)
Q Consensus 125 ~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~-s~lak~l~~~ 203 (554)
-.++..|++.|+.+...+.|+++..+ |.+.++...|.-. ....+++||+||-|.|+. ..+.+++...
T Consensus 159 ~~~~~~A~~~GA~i~ny~~V~~~~~~--g~~~~v~~~d~~t----------g~~~~v~ak~VVNAtGpW~d~v~~~~~~~ 226 (503)
T PRK13369 159 VLNALDAAERGATILTRTRCVSARRE--GGLWRLETRNSDT----------GETRTFRARALVNAAGPWVTDVIDRVAGL 226 (503)
T ss_pred HHHHHHHHHCCCHHHHCCEEEEEEEE--CCEEEEEEEECCC----------CCEEEEEEEEEEECCCCCHHHHHHHHCCC
T ss_conf 99999999878523307368877862--6489999998789----------95899985389986672389999862377
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCEEEEEEEEC---CCCCCCCCCHHH
Q ss_conf 48998888989988988887516566788808995043476876641257664798059999832---666566889889
Q gi|254781024|r 204 YSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMNTSGGGFVYHFDDNLVSIGFVLH---LDYRNPWISAYE 280 (554)
Q Consensus 204 ~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~~~gggwiy~~~d~~~~iG~v~~---ld~~~~~~~~~~ 280 (554)
.. .....+ ..|+- -+-+.......+. .+ ... -.---|++|..++.+.||.--. .+..++..+. +
T Consensus 227 ~~-~~~i~~---skG~H---lVl~~~~~~~~~~-~~--~~~--DgRviFvlPw~g~~tliGTTD~~~~~~pd~~~~t~-e 293 (503)
T PRK13369 227 NS-SRNVRL---VKGSH---IVVPKFWDGAQAY-LV--QNH--DKRVIFANPYEGDFALIGTTDIAYEGDPEDVAADE-E 293 (503)
T ss_pred CC-CCCEEE---EEEEE---EEEECCCCCCEEE-EE--ECC--CCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCH-H
T ss_conf 87-664247---74005---7750314786389-98--458--98569997525987999356766768856799999-9
Q ss_pred HHHHHHH--CCCHHHHHCCCCEECC--CCEECCCCCCCCCCCCCCCCEEEE---CCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999860--8004565038826303--513400542124874230887996---12323313664352268999999999
Q gi|254781024|r 281 ELQRFKT--HPDIRIIFTEGERLEY--GARVISEGGWQSVPKLSFPGGSLI---GCAAGFVNLLRIKGSHNAIISGMLAA 353 (554)
Q Consensus 281 ~lq~fk~--hp~i~~~l~gg~~~~y--ga~~ip~gg~~s~pk~~~~g~lLv---GDAAG~vnP~~g~GI~~Am~SG~lAA 353 (554)
+.+-+.. +..+.+.+.....+.. |-|.+...+-..-.+...+..+.+ ++.+|+++..-||=+. -++-|
T Consensus 294 EidyLL~~~n~~~~~~l~~~dIi~~~aGvRPL~~~~~~~~~~isR~h~i~~~~~~~~~~lisI~GGK~TT-----yR~mA 368 (503)
T PRK13369 294 EIDYLLTAVNRYFKEKLRREDVVHSFSGVRPLFDDGAGNPSAVTRDYVFDLDAERGGAPLLSVFGGKITT-----FRKLA 368 (503)
T ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCHHHH-----HHHHH
T ss_conf 9999999999745655884204899988730023688884545565399960688867547740761698-----99999
Q ss_pred HHHHHHH
Q ss_conf 9999987
Q gi|254781024|r 354 EKIVERL 360 (554)
Q Consensus 354 Eai~eal 360 (554)
|-+++.+
T Consensus 369 E~~vd~~ 375 (503)
T PRK13369 369 EHALERL 375 (503)
T ss_pred HHHHHHH
T ss_conf 9999999
No 114
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=99.34 E-value=2.9e-10 Score=90.25 Aligned_cols=189 Identities=22% Similarity=0.286 Sum_probs=106.9
Q ss_pred HHCCCCCEEEECCCHHHHHHHHHHHHC---CCCCEEEEEECCCCCCC-------------------CCCCC---------
Q ss_conf 010364779998976899999999980---89973999978677898-------------------64027---------
Q gi|254781024|r 10 KDVFEYDVVIIGAGPAGLAAAIRCKQI---NPHLSVVILEKSAEVGA-------------------HILSG--------- 58 (554)
Q Consensus 10 re~meyDVvIVGaGPAG~saA~~La~~---g~~l~VlvlEK~~~pG~-------------------~i~sG--------- 58 (554)
+..|.|||+||||||+|+.+|+.++-. +..+.|+++|++...-. +|++|
T Consensus 14 ~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r~~~~~~~~~~~c~~~~~~~I~~G~GgaG~fs~ 93 (486)
T COG2509 14 LMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQRLCPKDEKKLEKCPKCDPCPIVIGFGGAGLFSD 93 (486)
T ss_pred HHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHCCCCCCCHHHCCCCCCCEEEECCCCCCCCCC
T ss_conf 76510255897777267899999853213477328999980255554226644555211678997405763266331124
Q ss_pred CEEC--H---HHHHHHCCCHHHHCCCCCCCEEEEEEEEEECCCCCE----------------ECCCCCCCCCCCCCCCEE
Q ss_conf 4033--3---678886787264148854322436699997799767----------------736543565446788268
Q gi|254781024|r 59 AIID--P---IGIDSLLPRWREDKGHPFHTVVKRDLYWFLNAQRSI----------------QIPHFCLPDFMDNKEHYI 117 (554)
Q Consensus 59 ~vl~--p---~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~l~~~~~~----------------~~p~~~~p~~~~~~g~yi 117 (554)
+.+. | ..+.++.-||.+.- -+...+.+.-+.|-.+...+ ..+..+.+...++-|.
T Consensus 94 g~lnl~P~~Gg~~~~~~~d~~~~~--~~~~~vd~~~vqfG~~g~~~~~~~~e~ikd~e~~aa~a~~eil~~~~rHiGT-- 169 (486)
T COG2509 94 GILNLRPIRGGDVHERTKDTDEFW--ELVNLVDESNVQFGAPGAGTFSDLTEQIKDIEFRAAGAGEEILPIYQRHIGT-- 169 (486)
T ss_pred CCEECCCCCCCCHHHHHCCHHHHH--HHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCC--
T ss_conf 202025666610454517858888--8871341654103798674447845666679999709996056124651575--
Q ss_pred EEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHH
Q ss_conf 88889899999999874953306822434776277620145412432443466578756302677425786066443255
Q gi|254781024|r 118 VSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLT 197 (554)
Q Consensus 118 v~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~la 197 (554)
-.+.+..+-+.+.-+++|+++++.+.|.++.+ +++.+.+|.+.+ |.+|.+++||.|-|..|+=.
T Consensus 170 D~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~---------------g~~i~~~~vvlA~Grsg~dw 233 (486)
T COG2509 170 DILPKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTK---------------GEEIEADYVVLAPGRSGRDW 233 (486)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEEEEEEEEE-CCCCEEEEECCC---------------CCEEECCEEEECCCCCHHHH
T ss_conf 20699999999999855828995207889981-587079999257---------------84873277999047646789
Q ss_pred -HHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf -42112248998888989988988
Q gi|254781024|r 198 -RQLIERYSLMDGRQPQKFGLGIK 220 (554)
Q Consensus 198 -k~l~~~~~l~~~~~p~~~~~gvk 220 (554)
..+..+.++-....| +.+|++
T Consensus 234 ~~~l~~K~Gv~~~~~p--~dIGVR 255 (486)
T COG2509 234 FEMLHKKLGVKMRAKP--FDIGVR 255 (486)
T ss_pred HHHHHHHCCCCCCCCC--EEEEEE
T ss_conf 9999986294112477--068999
No 115
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.33 E-value=5e-12 Score=102.46 Aligned_cols=152 Identities=17% Similarity=0.290 Sum_probs=79.2
Q ss_pred CCCCHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEE
Q ss_conf 24200103647799989768999999999808997399997867789864027403336788867872641488543224
Q gi|254781024|r 6 ILHNKDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVV 85 (554)
Q Consensus 6 ~~~~re~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v 85 (554)
||... ||||+||||||||++||++++|+| ++|+|+||+..+|.--+--+++..++|.+-.-...+....++
T Consensus 1 ~m~m~---~YDviVIGaGpaG~~aA~~aa~~G--~kV~viE~~~~~GG~Cln~GCIPsK~L~~~a~~~~~~~~~~~---- 71 (465)
T PRK05249 1 MMHMY---DYDAVVIGSGPAGEGAAMQAAKLG--KRVAVIERYRNVGGGCTHWGTIPSKALREAVLRIIGFNQNPL---- 71 (465)
T ss_pred CCCCC---CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCC----
T ss_conf 99877---789899997789999999999789--929999769997665344461767999999999999875542----
Q ss_pred EEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCC
Q ss_conf 36699997799767736543565446788268888898999999998749533068224347762776201454124324
Q gi|254781024|r 86 KRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGK 165 (554)
Q Consensus 86 ~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~ 165 (554)
+........+.++. .+..... + ..+....+.++.+..|++++.|... ..++ ..+.|...+.
T Consensus 72 ----~~~~~~~~~~~~~~-----~~~~~~~-~--v~~~~~~~~~~l~~~gv~~i~G~a~---f~~~--~~v~V~~~dg-- 132 (465)
T PRK05249 72 ----YRDYRVKLRITFAD-----LLARADR-V--INKQVEVRRGFYARNRVEVIQGRAS---FVDP--HTVEVECPDG-- 132 (465)
T ss_pred ----CCCCCCCCCCCHHH-----HHHHHHH-H--HHHHHHHHHHHHHHCCCEEEEEEEE---ECCC--CCEEEECCCC--
T ss_conf ----46556668628999-----9999999-9--9888789999998689789984789---7279--8404434899--
Q ss_pred CCCCCCCCCCCCEEEEEEEEEEEECCCCCHH
Q ss_conf 4346657875630267742578606644325
Q gi|254781024|r 166 NYDGTQGKHYIAPMLLLSKYMLVGEGACGSL 196 (554)
Q Consensus 166 ~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~l 196 (554)
...+++|+.+|.|.|.+...
T Consensus 133 -----------~~~~i~a~~iIIATGs~p~~ 152 (465)
T PRK05249 133 -----------SVETLTAEKIVIATGSRPYR 152 (465)
T ss_pred -----------CEEEEEEEEEEEECCCCCCC
T ss_conf -----------62899842799953752456
No 116
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.33 E-value=1.1e-09 Score=86.10 Aligned_cols=303 Identities=22% Similarity=0.198 Sum_probs=143.3
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC-C-CCCCCCEECHHHH----------H----HHCCCHHH
Q ss_conf 03647799989768999999999808997399997867789-8-6402740333678----------8----86787264
Q gi|254781024|r 12 VFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG-A-HILSGAIIDPIGI----------D----SLLPRWRE 75 (554)
Q Consensus 12 ~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG-~-~i~sG~vl~p~aL----------~----eL~Pd~~e 75 (554)
.|++||+|||||-+|+++|++|++.|. +|+|+|+..-.. + ...+|.++.+... . .++.++.+
T Consensus 2 ~~~~~vvIIGgGi~Gls~A~~La~~G~--~V~vie~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 79 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGA--DVTVLEAGEAGGGAAGRNAGGILAPWASPGGELEVRPLADLSLALWRELSE 79 (387)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 976439998986999999999997699--199991798876766776777752423555303343379999999999887
Q ss_pred HCCCCCCCEEEEEEEEEECCCC-------------------C---EE-------CCCCCCC---CCCCCCCCEEEEHHHH
Q ss_conf 1488543224366999977997-------------------6---77-------3654356---5446788268888898
Q gi|254781024|r 76 DKGHPFHTVVKRDLYWFLNAQR-------------------S---IQ-------IPHFCLP---DFMDNKEHYIVSLGQV 123 (554)
Q Consensus 76 ~~g~pl~~~v~~d~~~~l~~~~-------------------~---~~-------~p~~~~p---~~~~~~g~yiv~r~~f 123 (554)
..... ........+.+..... . .+ .|....+ ..+.....-.++-..+
T Consensus 80 ~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~p~~~ 158 (387)
T COG0665 80 ELGTG-AGLRRRGLLDLAAREGLKGLAQLERLAAELEAAGEDAELLDAAEAAELEPALGPDFVCGGLFDPTGGHLDPRLL 158 (387)
T ss_pred HCCCC-CCEEEECEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCEEEEECCCCCEECHHHH
T ss_conf 53766-44566242998844674325668999999986021001188878766373337764334598488834578999
Q ss_pred HHHHHHHHHHCC-CEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHH-HHHHH
Q ss_conf 999999998749-5330682243477627762014541243244346657875630267742578606644325-54211
Q gi|254781024|r 124 CRWLKNKAEALG-VEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSL-TRQLI 201 (554)
Q Consensus 124 d~~L~~~Ae~~G-vei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~l-ak~l~ 201 (554)
.+-|++.+++.| +.+...+.+..+..+ . ...+|.|... .++|+.||.|.|..+.. ...+.
T Consensus 159 ~~~l~~~~~~~G~~~~~~~~~v~~~~~~-~-~~~~v~t~~g----------------~~~a~~vv~a~G~~~~~l~~~~~ 220 (387)
T COG0665 159 TRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGG----------------TIEADKVVLAAGAWAGELAATLG 220 (387)
T ss_pred HHHHHHHHHHCCCCEEECCCCEEEEEEC-C-CEEEEEECCC----------------EEECCEEEECCCCCHHHHHHHCC
T ss_conf 9999999997399189723524677614-7-3589995897----------------09819899999964355554235
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCEEEEEEEECCCC-CCCCCCHH-
Q ss_conf 2248998888989988988887516566788808995043476876641257664798059999832666-56688988-
Q gi|254781024|r 202 ERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMNTSGGGFVYHFDDNLVSIGFVLHLDY-RNPWISAY- 279 (554)
Q Consensus 202 ~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~~~gggwiy~~~d~~~~iG~v~~ld~-~~~~~~~~- 279 (554)
. +.....|.. + .+..+.+. ++.......+........++++.|..++++.+|....... ........
T Consensus 221 -~--~~~~~~p~~---~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 289 (387)
T COG0665 221 -E--LPLPLRPVR---G--QALTTEPP---EGLLADGLAPVVLVVDDGGGYIRPRGDGRLRVGGTDEEGGDDPSDPERED 289 (387)
T ss_pred -C--CCCCCEEEE---E--EEEEECCC---CCCCCCCCCCCEEEECCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCH
T ss_conf -2--344524675---5--69996377---63311234540254058855999888985999740233677776653100
Q ss_pred ----HHHHHHH-HCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCCCEEEECCCCC-----CCCCCCCCCHHHHHHHH
Q ss_conf ----9999986-0800456503882630351340054212487423088799612323-----31366435226899999
Q gi|254781024|r 280 ----EELQRFK-THPDIRIIFTEGERLEYGARVISEGGWQSVPKLSFPGGSLIGCAAG-----FVNLLRIKGSHNAIISG 349 (554)
Q Consensus 280 ----~~lq~fk-~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~g~lLvGDAAG-----~vnP~~g~GI~~Am~SG 349 (554)
+.++... ..|. +.........+...+ -..-|+.-++|-+.. +..-.++.|+.++-..|
T Consensus 290 ~~~~~l~~~~~~~~p~----l~~~~~~~~w~G~~~--------~t~pd~~P~iG~~~~~~~~~~a~G~~~~G~~~~p~~g 357 (387)
T COG0665 290 LVIAELLRVARALLPG----LADAGIEAAWAGLRP--------PTTPDGLPVIGRAAPLPNLYVATGHGGHGFTLAPALG 357 (387)
T ss_pred HHHHHHHHHHHHHCCC----CCCCCCCEEEEEECC--------CCCCCCCCEEEECCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 1599999999985824----245565257888647--------8689988788643898989999788772066728999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254781024|r 350 MLAAEKIVE 358 (554)
Q Consensus 350 ~lAAEai~e 358 (554)
+++|+.+..
T Consensus 358 ~~lA~~i~g 366 (387)
T COG0665 358 RLLADLILG 366 (387)
T ss_pred HHHHHHHCC
T ss_conf 999999749
No 117
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed
Probab=99.33 E-value=2.6e-09 Score=83.63 Aligned_cols=157 Identities=18% Similarity=0.223 Sum_probs=88.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC---CEECHH------HHHHHCC-------C-HHHHC
Q ss_conf 47799989768999999999808997399997867789864027---403336------7888678-------7-26414
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSG---AIIDPI------GIDSLLP-------R-WREDK 77 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG---~vl~p~------aL~eL~P-------d-~~e~~ 77 (554)
=||+|||||-||+++|+.|++.| ++|.|+||+..|+.. -|| +++.|+ .+.+|.- . |.+..
T Consensus 257 ~~VaVIGAGIAGas~A~~LA~rG--~~VtVlDr~~~~A~g-ASGn~aG~l~P~ls~~~~~~sr~~~~a~~~a~~~~~~l~ 333 (660)
T PRK01747 257 RDAAIIGGGIAGAALALALARRG--WQVTLYEADEAPAQG-ASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFYDLEA 333 (660)
T ss_pred CCEEEECCHHHHHHHHHHHHHCC--CEEEEEECCCCCCCC-CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 71899893899999999999789--968999479875655-666731267402578997689999999999999999875
Q ss_pred -CCCCCCEEEEEEEEEECCCCC--------------------------EECCCCC--CCCCCCCCCCEEEEHHHHHHHHH
Q ss_conf -885432243669999779976--------------------------7736543--56544678826888889899999
Q gi|254781024|r 78 -GHPFHTVVKRDLYWFLNAQRS--------------------------IQIPHFC--LPDFMDNKEHYIVSLGQVCRWLK 128 (554)
Q Consensus 78 -g~pl~~~v~~d~~~~l~~~~~--------------------------~~~p~~~--~p~~~~~~g~yiv~r~~fd~~L~ 128 (554)
+..+. -....+..+..+.. ..+.... .+..+-..+++ |+-..+++.|.
T Consensus 334 ~~~~~~--~~~~Gvl~la~~e~~~~r~~~~~~~~~~~~~~~~l~~~ea~~~~g~~~~~~Gl~~p~~G~-v~P~~l~~aLl 410 (660)
T PRK01747 334 LGVAFD--HDWCGVLQLAWDEKSAEKIAKMLEAGLPAELARALSAEEAEALAGLPVPCGGIFYPQGGW-LCPAELCRALL 410 (660)
T ss_pred CCCCCC--CCCCCEEEECCCHHHHHHHHHHHHHCCCCHHHEECCHHHHHHHHCCCCCCCCEEECCCCE-ECHHHHHHHHH
T ss_conf 468644--146756995498688999999997469943302479999977529987778378258977-56899999999
Q ss_pred HHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCH
Q ss_conf 9998749533068224347762776201454124324434665787563026774257860664432
Q gi|254781024|r 129 NKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGS 195 (554)
Q Consensus 129 ~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~ 195 (554)
+.+ ..|++++.++.|+.+..++++..+ .+. .+..+.|+.||.|-|..+.
T Consensus 411 ~~a-~~~i~~~~~~~V~~l~~~~~~w~l--~~~---------------~~~~~~Ad~VVlA~G~~s~ 459 (660)
T PRK01747 411 AAA-GQGLTIHFGHEVARLERVDDQWQL--DFA---------------GGVLASAPVVVLANGHDAT 459 (660)
T ss_pred HHC-CCCEEEEECCEEEEEEECCCEEEE--EEC---------------CCCEEECCEEEECCCCCHH
T ss_conf 864-798599927447899974980899--968---------------9928614679990561011
No 118
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=99.32 E-value=8.7e-13 Score=107.77 Aligned_cols=89 Identities=29% Similarity=0.660 Sum_probs=73.9
Q ss_pred CCCCCHHCCCCCCCCCCCCEEEEECCCCCHHCCHHHHCCHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 12321110378899888621796175544001735417813213586006889659970566515666704757300688
Q gi|254781024|r 456 DIMSSLFLAKVKYVKEQPMHLLIKDKDLQKKSELRIYSGPSMRYCPAGVYEWHQNNDENNYIIHAQNCIHCKACVIKDPN 535 (554)
Q Consensus 456 d~~~~v~~s~~~h~~~qp~Hl~~~~~~~~~~~~~~~~~~p~~~~cpa~vye~~~~~~~~~~~i~~~nc~hcktc~ik~p~ 535 (554)
+..+.+++-.-+-+|+.| ||.++|+..+...+ +.|++..|||++|++ .+..++.+..++||+|+||.|.+|.
T Consensus 8 ~iE~kL~~n~~~vDe~~p-HI~v~d~~~~~~~~----~~~l~~aCPA~~Y~~---~~~g~l~~~yegClECGTCRvlc~~ 79 (99)
T COG2440 8 NIEEKLSVNRYNVDEDHP-HIIVKDPDDCQECE----DKPLIKACPAGCYKL---IDDGKLRFDYEGCLECGTCRVLCPH 79 (99)
T ss_pred EHHHHHHHHEEECCCCCC-CEECCCCHHHHHCC----CHHHHHCCCHHHEEE---CCCCCEEEEECCEEECCCEEEECCC
T ss_conf 276842113153158997-47438802410133----114665398878068---7998689964680014632585178
Q ss_pred -CCCEEECCCCCCCCCCC
Q ss_conf -88625367988879988
Q gi|254781024|r 536 -QNIEWNPPQGGDGPHYV 552 (554)
Q Consensus 536 -~~i~w~~p~gg~gp~y~ 552 (554)
.+|.|.-|+||-|..|.
T Consensus 80 ~~~i~W~YPrgg~GI~yr 97 (99)
T COG2440 80 SGLIQWRYPRGGFGITYR 97 (99)
T ss_pred CCCEEEECCCCCCCEEEE
T ss_conf 752587558988677884
No 119
>TIGR01813 flavo_cyto_c flavocytochrome c; InterPro: IPR010960 This entry describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of Escherichia coli, mitochondria, and other well-characterised systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterised as a water-soluble periplasmic protein with four haem groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiration.; GO: 0000104 succinate dehydrogenase activity.
Probab=99.31 E-value=1.9e-11 Score=98.43 Aligned_cols=163 Identities=23% Similarity=0.299 Sum_probs=101.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC-CCCCCCEEC-H-----------H-HHHHH-CC---------
Q ss_conf 77999897689999999998089973999978677898-640274033-3-----------6-78886-78---------
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGA-HILSGAIID-P-----------I-GIDSL-LP--------- 71 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~-~i~sG~vl~-p-----------~-aL~eL-~P--------- 71 (554)
||||||+|-||+|||+.+.++|. .+|+||||.+.+|. -++||+.+. + . .- || |-
T Consensus 1 dvvvvGSG~AGlsAA~~A~~~G~-~~vv~LEK~~~iGGNS~~~ag~mn~a~T~~Q~~~gi~DdS~-el~~~DtlkgG~g~ 78 (487)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGL-ANVVVLEKMPVIGGNSAIAAGGMNAAGTDIQKKKGIEDDSP-ELFIKDTLKGGRGI 78 (487)
T ss_pred CEEEEECCHHHHHHHHHHHHCCC-CCEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHCCCCCCCH-HHHHHHHHHHCCCC
T ss_conf 96898427688999999986468-76378705752322689977210235684888548889967-78899888632788
Q ss_pred -----------------CHHHHCCCCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHC
Q ss_conf -----------------726414885432243669999779976773654356544678826888889899999999874
Q gi|254781024|r 72 -----------------RWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEAL 134 (554)
Q Consensus 72 -----------------d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~ 134 (554)
||.++.+. ....+ .+...+..+.+-...|..-..-| ..+.+-|.+.|.+.
T Consensus 79 n~~~L~~~la~~s~~a~~wl~d~~~----~~~l~---~~~~~GGhs~~R~Hrp~gG~~~G------~~iv~~L~~~a~~~ 145 (487)
T TIGR01813 79 NDPELVRTLAEESADAVDWLQDCGV----GFRLD---DLIQLGGHSVKRAHRPTGGAASG------AEIVQKLSKKAKKE 145 (487)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCC----CEECC---HHHHCCCCCCCCCCCCCCCCCCC------CHHHHHHHHHHHHC
T ss_conf 8789999999878899887764221----00011---14432787646430347887678------40117778877433
Q ss_pred C------CEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCC-HH
Q ss_conf 9------53306822434776277620145412432443466578756302677425786066443-25
Q gi|254781024|r 135 G------VEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACG-SL 196 (554)
Q Consensus 135 G------vei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s-~l 196 (554)
| ++++..+.|.+++.+++|.|+||.....-.-++... ...-..+.+|-||+|.|=.| .=
T Consensus 146 gskDsnlv~~~~n~~v~~li~d~~G~v~Gv~V~~~Y~F~~~~~---~~~~~~~a~k~Vv~AtGGFgy~N 211 (487)
T TIGR01813 146 GSKDSNLVETRLNSKVEDLIQDDQGQVVGVVVKGDYDFKDEKK---GKKIYIKAAKAVVLATGGFGYSN 211 (487)
T ss_pred CCCCCCHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCCCCCC---CCCEEEEEECCEEEEECCCCHHH
T ss_conf 7743211221006727999986971189999621225887777---87326755060689757613333
No 120
>KOG3855 consensus
Probab=99.30 E-value=1.1e-10 Score=93.06 Aligned_cols=326 Identities=16% Similarity=0.179 Sum_probs=162.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHC--CCCCEEEEEECCCCC--CCCCCCCC------EECHHHHHH--HCCCHHHHCCCCC
Q ss_conf 64779998976899999999980--899739999786778--98640274------033367888--6787264148854
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQI--NPHLSVVILEKSAEV--GAHILSGA------IIDPIGIDS--LLPRWREDKGHPF 81 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~--g~~l~VlvlEK~~~p--G~~i~sG~------vl~p~aL~e--L~Pd~~e~~g~pl 81 (554)
.||||||||||.|++.|..|... =++.+|+|||-+..| ++-..++- .+.|+.+.- .+--|....-
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~--- 112 (481)
T KOG3855 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFH--- 112 (481)
T ss_pred CCCEEEECCCHHHHHHHHHHCCCCCCCHHEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHCCHHHHHHH---
T ss_conf 07789988844778999986249850000146774246753245666765235031278524798873477877656---
Q ss_pred CCEEEEEEEEEECC--CCCEECCCCCCCCCCCCCCCEEEEHHHH-HHHH--HHHHHHCCCEECCCCEEEEEEE------C
Q ss_conf 32243669999779--9767736543565446788268888898-9999--9999874953306822434776------2
Q gi|254781024|r 82 HTVVKRDLYWFLNA--QRSIQIPHFCLPDFMDNKEHYIVSLGQV-CRWL--KNKAEALGVEIYCGFTATEIYY------G 150 (554)
Q Consensus 82 ~~~v~~d~~~~l~~--~~~~~~p~~~~p~~~~~~g~yiv~r~~f-d~~L--~~~Ae~~Gvei~~g~~v~~i~~------~ 150 (554)
.+.-+.++++.-+. +..+.+.. +.+..+-++++.-... +..+ .-.++..-++|.....+..+.+ +
T Consensus 113 ~R~~~~~~~~v~Ds~s~a~I~~~~----d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~ 188 (481)
T KOG3855 113 DRYQKFSRMLVWDSCSAALILFDH----DNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKN 188 (481)
T ss_pred HCCCCCCCEEEECCCCHHHHHHCC----CCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCCCC
T ss_conf 405620243554141255631145----5566652036643477998888777641476243114532320123456789
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 77620145412432443466578756302677425786066443255421122489988889899889888875165667
Q gi|254781024|r 151 KKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYH 230 (554)
Q Consensus 151 e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~ 230 (554)
+++...-+.+.+ |..+..+++|+|||.+|.+++..... ..... -.. .|+-....+..+..
T Consensus 189 ~n~~~~~i~l~d---------------g~~~~~~LLigAdg~Ns~vR~~snid--~~~~n-y~~--havVAtl~l~~~~~ 248 (481)
T KOG3855 189 DNGMWFHITLTD---------------GINFATDLLIGADGFNSVVRKASNID--VASWN-YDQ--HAVVATLKLEEEAI 248 (481)
T ss_pred CCCCEEEEEECC---------------CCEEEECEEECCCCCCCHHHHHCCCC--CCCCC-CCC--EEEEEEEEECCCCC
T ss_conf 986537899326---------------84544100404545551213212787--55432-100--24667887023356
Q ss_pred CCCEEEEEECCCCCCCCCCCEEEEECCCCEEEEEEEECCCC-CCCCCCHHHHHHHHH------HCCC-------------
Q ss_conf 88808995043476876641257664798059999832666-566889889999986------0800-------------
Q gi|254781024|r 231 RRGLALHSIGWPLDMNTSGGGFVYHFDDNLVSIGFVLHLDY-RNPWISAYEELQRFK------THPD------------- 290 (554)
Q Consensus 231 ~~G~~~h~~g~~~~~~~~gggwiy~~~d~~~~iG~v~~ld~-~~~~~~~~~~lq~fk------~hp~------------- 290 (554)
..+..|+-| + +.|.-=+-|+.|+..++-+-+...- +.-..-|.+.|-++. +.+.
T Consensus 249 ~~~~AwQRF---l---P~GpiAllpl~d~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~ 322 (481)
T KOG3855 249 LNGVAWQRF---L---PTGPIALLPLSDTLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNG 322 (481)
T ss_pred CCCHHHHHC---C---CCCCEEECCCCCCCCCCEEECCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHCHHHHHCC
T ss_conf 641467754---7---9886052466655220265247778889860892447999877772037772122233555202
Q ss_pred HH----HHHCCCC----------EE---CCCCEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 45----6503882----------63---0351340054212487423088799612323313664352268999999999
Q gi|254781024|r 291 IR----IIFTEGE----------RL---EYGARVISEGGWQSVPKLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAA 353 (554)
Q Consensus 291 i~----~~l~gg~----------~~---~yga~~ip~gg~~s~pk~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAA 353 (554)
.+ .++...+ .. ......-|.| +.-....+.+|..|+||||.-+.|+-|-|.++....=....
T Consensus 323 ~~~~~~sl~~~~k~~~~~q~pp~V~~v~dksRa~FPLg-f~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~ 401 (481)
T KOG3855 323 RAQLSESLLNTSKRLANQQYPPSVFEVGDKSRAQFPLG-FGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILV 401 (481)
T ss_pred HHHCCHHHHHCCCCCCCCCCCCEEEEECCCCEEECCCC-CCCHHHHCCCCHHHHCCHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf 22306888740375446645971788625550425445-53287761876142143132146576666677721699999
Q ss_pred HHHHHHHHCCCCC---CCHHHHH
Q ss_conf 9999987458865---3036789
Q gi|254781024|r 354 EKIVERLSNGKKH---DDPIEIE 373 (554)
Q Consensus 354 Eai~eal~~g~~~---~~l~~Ye 373 (554)
++..+|+..|.-- ..|..|+
T Consensus 402 ~sL~~ai~~g~DlgS~~~L~~y~ 424 (481)
T KOG3855 402 DSLSEAIVSGLDLGSVEHLEPYE 424 (481)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 99999997213534323302999
No 121
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.29 E-value=7.9e-11 Score=94.16 Aligned_cols=166 Identities=22% Similarity=0.296 Sum_probs=97.7
Q ss_pred CCCCHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC-CCCCC--CCCEE---CH----------------
Q ss_conf 2420010364779998976899999999980899739999786778-98640--27403---33----------------
Q gi|254781024|r 6 ILHNKDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEV-GAHIL--SGAII---DP---------------- 63 (554)
Q Consensus 6 ~~~~re~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~p-G~~i~--sG~vl---~p---------------- 63 (554)
|.|+=+.|++||||||+|.||++||+.+++. +|+||+|.... |.... .|++- .+
T Consensus 1 ~~~~~~~~~tDVlVIGsG~AGL~AAl~~a~~----~v~vi~k~~~~~g~ss~~AqGGi~a~~~~~Ds~e~h~~Dtl~aG~ 76 (507)
T PRK07512 1 MEMDLDDLTGRPVIVGGGLAGLMTALKLAPR----PVVLLSRAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGA 76 (507)
T ss_pred CCCCCCCCCCCEEEECCCHHHHHHHHHHCCC----CEEEEEECCCCCCCCHHHHCCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9977665369989999669999999983307----839999058899962667524514606999999999999999647
Q ss_pred -----HHHHHHC---C---CHHHHCCCCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHH
Q ss_conf -----6788867---8---7264148854322436699997799767736543565446788268888898999999998
Q gi|254781024|r 64 -----IGIDSLL---P---RWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAE 132 (554)
Q Consensus 64 -----~aL~eL~---P---d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae 132 (554)
..++.|. | +|.+..|.|+.+.- +.-+.++..+.-+. |+..+..+. ..-..+-+-|.+++.
T Consensus 77 gl~d~~~v~~l~~~a~~~i~~L~~~Gv~F~r~~--~G~~~~~~~ggHs~-----~R~~~~~gd--~tG~~i~~~L~~~~~ 147 (507)
T PRK07512 77 GLCDEAVARRIAAEAPAAIEDLLRLGVPFDRDA--DGRLALGLEAAHSR-----RRIVHVGGD--GAGAAIMRALIAAVR 147 (507)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCCCC-----CEEEEECCC--CCCHHHHHHHHHHHH
T ss_conf 878899999999989999999998099364478--87511456655678-----727874588--743699999999998
Q ss_pred HC-CCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHH
Q ss_conf 74-953306822434776277620145412432443466578756302677425786066443255
Q gi|254781024|r 133 AL-GVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLT 197 (554)
Q Consensus 133 ~~-Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~la 197 (554)
+. |++++.++.+.+++. ++|++.|+.....| ....|+|+.||.|.|-.+.+-
T Consensus 148 ~~~~I~i~~~~~~~~Ll~-~~g~v~Gv~~~~~g------------~~~~i~A~aVILATGG~g~ly 200 (507)
T PRK07512 148 ATPSITVLEGAEARRLLV-EDGAVAGVLLATAG------------GPVVLPARAVVLATGGIGGLY 200 (507)
T ss_pred HCCCCEEEEEEEEEEEEE-CCCEEEEEEEECCC------------CEEEEEECEEEECCCCCCCCC
T ss_conf 279944999899888775-38807899997389------------889998286998889775667
No 122
>TIGR01373 soxB sarcosine oxidase, beta subunit family; InterPro: IPR006278 These sequences represent the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. The model is designated as subfamily rather than equivalog for this reason. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) forms that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=99.28 E-value=5.4e-11 Score=95.30 Aligned_cols=179 Identities=21% Similarity=0.243 Sum_probs=105.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCCCCC-------CCEECH-------HHHHHHCCCHHHHC
Q ss_conf 3647799989768999999999808997-39999786778986402-------740333-------67888678726414
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHL-SVVILEKSAEVGAHILS-------GAIIDP-------IGIDSLLPRWREDK 77 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l-~VlvlEK~~~pG~~i~s-------G~vl~p-------~aL~eL~Pd~~e~~ 77 (554)
-+|||||||||==||++||+||+. +++ +|+||||+- +|+-|+. -..|.| ++++ |.-...++.
T Consensus 29 ~~YDviIvGgGGHGLATAYYLA~~-hGItnVAVlEKgw-lGgGN~gRNTTivRSNYl~p~s~~~Ye~a~k-LweGLs~dL 105 (407)
T TIGR01373 29 PEYDVIIVGGGGHGLATAYYLAKE-HGITNVAVLEKGW-LGGGNTGRNTTIVRSNYLYPESAELYEHAMK-LWEGLSQDL 105 (407)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHH-CCCCEEEEEEECC-CCCCCCCCCCEEEEEECCCCCCHHHHHHHHH-HHHCHHHHC
T ss_conf 854678886886068999998864-6940689985062-1688664342146541026452237888988-861200120
Q ss_pred ---------C-----------CCCCCEEEEEEEE-----EECCCC-CEECCCCCCC--CCCCCCCCEE-----EEHHHHH
Q ss_conf ---------8-----------8543224366999-----977997-6773654356--5446788268-----8888989
Q gi|254781024|r 78 ---------G-----------HPFHTVVKRDLYW-----FLNAQR-SIQIPHFCLP--DFMDNKEHYI-----VSLGQVC 124 (554)
Q Consensus 78 ---------g-----------~pl~~~v~~d~~~-----~l~~~~-~~~~p~~~~p--~~~~~~g~yi-----v~r~~fd 124 (554)
| --.++.|...++. +|++.. +-.+|....- -.++-.|+.+ +-|.+=.
T Consensus 106 NYNvM~SqRG~~nL~H~~~~~~~~~R~v~A~r~~GvDaELl~~~~v~~~~P~ld~s~daRfPv~Gg~~QrRgGtaRHDAV 185 (407)
T TIGR01373 106 NYNVMFSQRGVLNLAHSTADMDDYARRVNAMRLNGVDAELLSPEQVKRLIPILDFSKDARFPVVGGLLQRRGGTARHDAV 185 (407)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEECCCCHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCEEEHHH
T ss_conf 20011213323432188878764314100111036463206878999618811288888863005400137871021012
Q ss_pred HH-HHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHH
Q ss_conf 99-99999874953306822434776277620145412432443466578756302677425786066443255421122
Q gi|254781024|r 125 RW-LKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIER 203 (554)
Q Consensus 125 ~~-L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~ 203 (554)
.| .|+-|.+.||+|++.+.|+.+...++|+++||.|.+--+ =-.|+-|.+-|.-|.+++..+.+
T Consensus 186 AWGYARgAd~~GVdiIqncEvTg~~~~~~grv~GV~T~RG~I---------------gA~kvgva~AG~ss~~a~~AG~r 250 (407)
T TIGR01373 186 AWGYARGADARGVDIIQNCEVTGFIRRENGRVIGVETTRGFI---------------GAKKVGVAVAGNSSVVAELAGFR 250 (407)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCEEEECCCEEEEEECCCCCC---------------CCEEEEEEEECCHHHHHHHCCCC
T ss_conf 221464230058403222320231650687588654487410---------------10378888717758989763742
Q ss_pred CCCCCC
Q ss_conf 489988
Q gi|254781024|r 204 YSLMDG 209 (554)
Q Consensus 204 ~~l~~~ 209 (554)
.++...
T Consensus 251 lPieSh 256 (407)
T TIGR01373 251 LPIESH 256 (407)
T ss_pred CCHHHH
T ss_conf 662110
No 123
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.27 E-value=7e-09 Score=80.61 Aligned_cols=316 Identities=16% Similarity=0.140 Sum_probs=156.4
Q ss_pred HHCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC-----C-CCCCCCEE---------CHHHHHH------
Q ss_conf 0103647799989768999999999808997399997867789-----8-64027403---------3367888------
Q gi|254781024|r 10 KDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG-----A-HILSGAII---------DPIGIDS------ 68 (554)
Q Consensus 10 re~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG-----~-~i~sG~vl---------~p~aL~e------ 68 (554)
++ ++|||+|||||-.|+-.|..+|..| ++|+|+||+.+.. + |.+=|++= -..+|.|
T Consensus 9 ~~-~~~DviVIGGGitG~GiArDaA~RG--l~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~ 85 (532)
T COG0578 9 RM-EEFDVIVIGGGITGAGIARDAAGRG--LKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLR 85 (532)
T ss_pred CC-CCCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 33-5777899898654699999998679--84999954765676667634575541666530654799999999999997
Q ss_pred HCCCHHHHCCCCCCCEEEE---EEE----------------------EEECCCCCEECCCCCCCCCCCCC---CCEEEEH
Q ss_conf 6787264148854322436---699----------------------99779976773654356544678---8268888
Q gi|254781024|r 69 LLPRWREDKGHPFHTVVKR---DLY----------------------WFLNAQRSIQIPHFCLPDFMDNK---EHYIVSL 120 (554)
Q Consensus 69 L~Pd~~e~~g~pl~~~v~~---d~~----------------------~~l~~~~~~~~p~~~~p~~~~~~---g~yiv~r 120 (554)
.-|...+... .-.++.. +.. .++.......+.....+...... .-+.++=
T Consensus 86 ~APH~v~p~~--~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vdd 163 (532)
T COG0578 86 IAPHLVEPLP--FLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDD 163 (532)
T ss_pred HCCCCCCCCC--CEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHCCCCCCHHCCCCEEEECCCEECH
T ss_conf 5866113686--75863688652247886899998762512358743311655520028654620045419970635246
Q ss_pred HHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHH
Q ss_conf 89899999999874953306822434776277620145412432443466578756302677425786066443255421
Q gi|254781024|r 121 GQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQL 200 (554)
Q Consensus 121 ~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l 200 (554)
.+|.--++..|.+.|++++..+.|+.+..+ ++ +.||...|.-. ....+++|+.||-|.|+.+---.+.
T Consensus 164 aRLv~~~a~~A~~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~~t----------g~~~~ira~~VVNAaGpW~d~i~~~ 231 (532)
T COG0578 164 ARLVAANARDAAEHGAEILTYTRVESLRRE-GG-VWGVEVEDRET----------GETYEIRARAVVNAAGPWVDEILEM 231 (532)
T ss_pred HHHHHHHHHHHHHCCCHHHHCCEEEEEEEC-CC-EEEEEEEECCC----------CCEEEEECCEEEECCCCCHHHHHHH
T ss_conf 889999999999653012304615345540-87-78999971578----------8279988377998987018999876
Q ss_pred H-HHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCEEEEEEE-ECC--CCCCCCC
Q ss_conf 1-22489988889899889888875165667888089950434768766412576647980599998-326--6656688
Q gi|254781024|r 201 I-ERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMNTSGGGFVYHFDDNLVSIGFV-LHL--DYRNPWI 276 (554)
Q Consensus 201 ~-~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~~~gggwiy~~~d~~~~iG~v-~~l--d~~~~~~ 276 (554)
. ..........| ..|+ .-|-+..+..... +++ .... ..---|+.|..+.. .||.- +.. +..++..
T Consensus 232 ~~~~~~~~~~vr~---skGs---HlVv~~~~~~~~a-~~~--~~~~-d~r~~f~iP~~~~~-liGTTD~~~~~~~~~~~~ 300 (532)
T COG0578 232 AGLEQSPHIGVRP---SKGS---HLVVDKKFPINQA-VIN--RCRK-DGRIVFAIPYEGKT-LIGTTDTDYDGDPEDPRI 300 (532)
T ss_pred HCCCCCCCCCCEE---CCCE---EEEECCCCCCCCE-EEE--ECCC-CCCEEEEECCCCCE-EECCCCCCCCCCCCCCCC
T ss_conf 2346777764351---6603---8995665788754-896--4489-98669994488987-861166136898566888
Q ss_pred CHHHHHHHHHHC-CCHHHHHCCCCEECC--CCEECCCCCCCCCCCCCCCCEEEECCC--CCCCCCCCCCCHHHHHHHHHH
Q ss_conf 988999998608-004565038826303--513400542124874230887996123--233136643522689999999
Q gi|254781024|r 277 SAYEELQRFKTH-PDIRIIFTEGERLEY--GARVISEGGWQSVPKLSFPGGSLIGCA--AGFVNLLRIKGSHNAIISGML 351 (554)
Q Consensus 277 ~~~~~lq~fk~h-p~i~~~l~gg~~~~y--ga~~ip~gg~~s~pk~~~~g~lLvGDA--AG~vnP~~g~GI~~Am~SG~l 351 (554)
+..+.-.-+..- -++...+.....+.. |-|.+...+-. -++-..-+..|.-++ +|+++.+-||=+.+ +.
T Consensus 301 ~~eEidyll~~~~~~~~~~l~~~dI~~syaGVRPL~~~~~~-~~~~isR~~~l~~~~~~~glltv~GGKlTTy-----R~ 374 (532)
T COG0578 301 TEEEIDYLLDAVNRYLAPPLTREDILSTYAGVRPLVDDGDD-DTSAISRDHVLFDHAELAGLLTVAGGKLTTY-----RK 374 (532)
T ss_pred CHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEEEECCCCCCC-CHHHCCCCEEEEECCCCCCEEEEECCHHHHH-----HH
T ss_conf 99999999999985442269733422453123204678997-6210667627884378787599865516776-----99
Q ss_pred HHHHHHHH
Q ss_conf 99999998
Q gi|254781024|r 352 AAEKIVER 359 (554)
Q Consensus 352 AAEai~ea 359 (554)
-||-+.+.
T Consensus 375 maE~a~d~ 382 (532)
T COG0578 375 MAEDALDA 382 (532)
T ss_pred HHHHHHHH
T ss_conf 99999999
No 124
>PRK11749 putative oxidoreductase; Provisional
Probab=99.27 E-value=2.2e-09 Score=84.07 Aligned_cols=38 Identities=42% Similarity=0.625 Sum_probs=34.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 6477999897689999999998089973999978677898
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGA 53 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~ 53 (554)
.--|+||||||||+|||++|+++| ++|.|+||.+.||.
T Consensus 140 gkkVAIIGaGPAGLsAA~~Lar~G--~~VtVfE~~~~~GG 177 (460)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKG--YDVTIFEARDKAGG 177 (460)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCC
T ss_conf 998999896789999999999769--84799704787875
No 125
>PRK10262 thioredoxin reductase; Provisional
Probab=99.26 E-value=5.9e-11 Score=95.04 Aligned_cols=116 Identities=16% Similarity=0.253 Sum_probs=73.1
Q ss_pred HHCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEE
Q ss_conf 01036477999897689999999998089973999978677898640274033367888678726414885432243669
Q gi|254781024|r 10 KDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDL 89 (554)
Q Consensus 10 re~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~ 89 (554)
+++.+|||+||||||||++||++|++.| ++|+|+|+... |.. +.. ..++
T Consensus 2 ~~~k~~dviIIG~GPAGLsAA~~a~r~g--~~~~lie~~~~-GG~------l~~--------------~~~i-------- 50 (321)
T PRK10262 2 GTTKHSKLLILGSGPAGYTAAVYAARAN--LQPVLITGMEK-GGQ------LTT--------------TTEV-------- 50 (321)
T ss_pred CCCEEEEEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCC-CCC------CCC--------------CCCE--------
T ss_conf 9860600999997689999999999869--96799960596-874------200--------------5603--------
Q ss_pred EEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCC
Q ss_conf 99977997677365435654467882688888989999999987495330682243477627762014541243244346
Q gi|254781024|r 90 YWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDG 169 (554)
Q Consensus 90 ~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~ 169 (554)
..+|. .| ..++-..+-+-|.++++..++++... .+..+...+++.. +.+ +
T Consensus 51 ---------~n~pg--~~--------~~i~G~~l~~~~~~q~~~~~~~i~~~-~v~~i~~~~~~f~--v~t-~------- 100 (321)
T PRK10262 51 ---------ENWPG--DP--------NDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQNRPFR--LTG-D------- 100 (321)
T ss_pred ---------EECCC--CC--------CCCCHHHHHHHHHHHHHHHCCEEEEC-CCCEEEEECCCEE--EEC-C-------
T ss_conf ---------56178--88--------76477999999999999708748941-2315774036519--975-8-------
Q ss_pred CCCCCCCCEEEEEEEEEEEECCCCC
Q ss_conf 6578756302677425786066443
Q gi|254781024|r 170 TQGKHYIAPMLLLSKYMLVGEGACG 194 (554)
Q Consensus 170 ~~~~~~~~g~~i~Ak~vI~AdG~~s 194 (554)
..++++|.||.|.|...
T Consensus 101 --------~g~~~a~aViiAtG~~~ 117 (321)
T PRK10262 101 --------SGEYTCDALIIATGASA 117 (321)
T ss_pred --------CCEEEEEEEEEEECCCC
T ss_conf --------98899989999646865
No 126
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.25 E-value=1.7e-09 Score=84.88 Aligned_cols=39 Identities=33% Similarity=0.584 Sum_probs=34.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 64779998976899999999980899739999786778986
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAH 54 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~ 54 (554)
..-|.||||||||||||+.|+++| ++|.|+||.+.||.-
T Consensus 143 gkkVAVIGsGPAGLsaA~~Lar~G--~~VtVfE~~~~~GGl 181 (472)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAG--HKVTVFERDDRIGGL 181 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCE
T ss_conf 998999897789999999998669--758997257777754
No 127
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.24 E-value=1.9e-08 Score=77.65 Aligned_cols=163 Identities=16% Similarity=0.218 Sum_probs=89.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC------CCCCCCCEEC---------HHHHHH------HCCC
Q ss_conf 647799989768999999999808997399997867789------8640274033---------367888------6787
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG------AHILSGAIID---------PIGIDS------LLPR 72 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG------~~i~sG~vl~---------p~aL~e------L~Pd 72 (554)
+|||+|||||--|+.+|.-+|..| +||+|+||+.|.. +|.+-|++=+ ..+|.| .-|.
T Consensus 6 ~~DvlVIGGGitGagvA~daA~RG--l~v~LvE~~DfasGTSsrSskLiHGGlRYLe~~~~~lV~Esl~ER~~L~~~APh 83 (503)
T PRK12266 6 TYDLLVIGGGINGAGIARDAAGRG--LSVLLCEADDLASATSSASTKLIHGGLRYLEHYEFRLVREALAEREVLLRMAPH 83 (503)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCCCCCCCEECHHHHHCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 479899997788999999998679--969999368756833477544751157777328489999999999999985886
Q ss_pred HHHHCCCCCCCEEEEEE--EE----------EECCC------CCEECCCC--CCCCCCCC-CCCE-----EEEHHHHHHH
Q ss_conf 26414885432243669--99----------97799------76773654--35654467-8826-----8888898999
Q gi|254781024|r 73 WREDKGHPFHTVVKRDL--YW----------FLNAQ------RSIQIPHF--CLPDFMDN-KEHY-----IVSLGQVCRW 126 (554)
Q Consensus 73 ~~e~~g~pl~~~v~~d~--~~----------~l~~~------~~~~~p~~--~~p~~~~~-~g~y-----iv~r~~fd~~ 126 (554)
..+. .|+-.|..... .| ++... +.++.... ..| ..++ .+++ .++=.+++-.
T Consensus 84 lv~p--l~f~~P~~~~~~p~~~~~~Gl~lYD~la~~~~~~~~~~l~~~~~~~~~p-L~~~l~~~~~Y~D~q~dDaRL~l~ 160 (503)
T PRK12266 84 IIWP--MRFVLPHRPHLRPAWMIRLGLFLYDHLGKRKSLPGSRGLDLRRFPAGSP-LKPEITRGFEYSDCWVDDARLVVL 160 (503)
T ss_pred CCCC--CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHCCCCCC-CCHHCCEEEEEEEEEECHHHHHHH
T ss_conf 5632--2257745777640799987899998753756678511321654113376-554236689996337581899999
Q ss_pred HHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCC
Q ss_conf 9999987495330682243477627762014541243244346657875630267742578606644
Q gi|254781024|r 127 LKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGAC 193 (554)
Q Consensus 127 L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~ 193 (554)
++..|++.|+.+..-+.|+++..+++... |...|.-. ....+++||+||-|.|+.
T Consensus 161 ~~~~A~~~GA~v~ny~~v~~~~~~~~~~~--v~~~D~~t----------g~~~~v~ak~VVNAtGpW 215 (503)
T PRK12266 161 NARDAAERGAEILTRTRVVSARREGGLWH--VTLEDTAT----------GKRYTVRARALVNAAGPW 215 (503)
T ss_pred HHHHHHHCCCEEECCCEEEEEEECCCEEE--EEEEECCC----------CCEEEEEECEEEECCCCC
T ss_conf 99999866876602423788997298899--99998689----------978999927799876710
No 128
>PRK12831 putative oxidoreductase; Provisional
Probab=99.23 E-value=5.3e-10 Score=88.42 Aligned_cols=38 Identities=37% Similarity=0.506 Sum_probs=34.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 4779998976899999999980899739999786778986
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAH 54 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~ 54 (554)
--|.|||+||||||||+.|+++| ++|.|+||...||.-
T Consensus 141 kkVAVIGsGPAGLsaA~~La~~G--~~VtVfE~~~~~GG~ 178 (464)
T PRK12831 141 KKVAVIGSGPAGLTCAGDLAKKG--YDVTIFEALHEPGGV 178 (464)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CCEEEECCCCCCCCE
T ss_conf 98999897689999999999769--917998278888980
No 129
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.22 E-value=2.1e-09 Score=84.29 Aligned_cols=193 Identities=19% Similarity=0.237 Sum_probs=103.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC--CCCCEE--CHHHHHHH-CC----------------
Q ss_conf 3647799989768999999999808997399997867789864--027403--33678886-78----------------
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI--LSGAII--DPIGIDSL-LP---------------- 71 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i--~sG~vl--~p~aL~eL-~P---------------- 71 (554)
+---|||||+|-||+|||+.+++.| .+|+||||.+++|.-. -||++= .++.-.++ +.
T Consensus 408 lP~rVIVVGsGlAGLSAAIeA~e~G--akVVLLEKmp~lGGNS~KASSGINgAgT~~Qk~~GI~DS~ElF~~DTlKSGkG 485 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCG--AQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDTHLSGKG 485 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf 9986899897579999999999779--95799957898887400331573668977789709988888999998873378
Q ss_pred -------------------CHHHHCCCCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHH
Q ss_conf -------------------7264148854322436699997799767736543565446788268888898999999998
Q gi|254781024|r 72 -------------------RWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAE 132 (554)
Q Consensus 72 -------------------d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae 132 (554)
+|.+..|.++.. ++.-+.-+.+-.-.|.. ...|..+..-..+.+.|.+..+
T Consensus 486 ~n~DPeLVr~La~~SadAIeWL~e~GVdLs~---------LsqLGGHSvkRTHR~~~-~~~G~pvPiG~~Iv~~Le~~ik 555 (1167)
T PTZ00306 486 GHCDPGLVKTLSVKSADAISWLSSLGVPLTV---------LSQLGGASRKRCHRAPD-KKDGTPVPIGFTIMRTLEDHIR 555 (1167)
T ss_pred CCCCHHHHHHHHHCCHHHHHHHHHCCCCHHH---------HCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9999799999997348899999984998477---------02456878676467988-7788646765999999999998
Q ss_pred ---HCCCEECCCCEEEEEEECCCC--------CEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHH--HHH
Q ss_conf ---749533068224347762776--------2014541243244346657875630267742578606644325--542
Q gi|254781024|r 133 ---ALGVEIYCGFTATEIYYGKKG--------EALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSL--TRQ 199 (554)
Q Consensus 133 ---~~Gvei~~g~~v~~i~~~e~g--------~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~l--ak~ 199 (554)
...+.|+.+++|++++.+.++ +|.||...+. .+++ .....+.|+-||+|.|-.|.- .++
T Consensus 556 ~kl~~~V~I~~~tkVt~LL~d~~g~~DG~~~~kVtGVey~~~-~d~e-------G~~~tI~AkaVVLATGGFgaDke~~s 627 (1167)
T PTZ00306 556 TKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQA-SDAS-------GQVMDLLADAVILATGGFSNDHTPNS 627 (1167)
T ss_pred HHCCCCCEEEECCEEEEEEECCCCCCCCCCCCEEEEEEEEEC-CCCC-------CCEEEEECCEEEEECCCCCCCHHHHH
T ss_conf 635567278855789998741576756765315888998423-5678-------85499834779996888776620667
Q ss_pred HHHHC-----CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 11224-----899888898998898888751
Q gi|254781024|r 200 LIERY-----SLMDGRQPQKFGLGIKELWKI 225 (554)
Q Consensus 200 l~~~~-----~l~~~~~p~~~~~gvke~~ei 225 (554)
+..++ ++.....|..-+-|+|...++
T Consensus 628 LLkkYrPdL~~fpTTNgpgATGDGIkMA~~I 658 (1167)
T PTZ00306 628 LLREYAPQLSGFPTTNGPWATGDGVKLARKL 658 (1167)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHC
T ss_conf 8876396436888889999762689999985
No 130
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.21 E-value=1.5e-10 Score=92.18 Aligned_cols=163 Identities=18% Similarity=0.215 Sum_probs=93.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC-CCCCC--CCCE---EC------------------------H
Q ss_conf 64779998976899999999980899739999786778-98640--2740---33------------------------3
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEV-GAHIL--SGAI---ID------------------------P 63 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~p-G~~i~--sG~v---l~------------------------p 63 (554)
+|||||||+|-|||+||+.+++.| .+|+||+|+..| |+|.. .|++ +. +
T Consensus 33 ~~DVlVIGsG~AGL~AAi~aa~~G--~~V~vl~~~~~~~~snS~~AqGGInAa~~~~~~~DS~e~H~~DTlkaG~gl~d~ 110 (638)
T PRK07573 33 KFDIIVVGTGLAGASAAATLGELG--YNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDGDSVYRLFYDTVKGGDFRARE 110 (638)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCH
T ss_conf 488899996699999999999749--956999922899962088875556740468999989899999999862787749
Q ss_pred HHHHHHC---C---CHHHHCCCCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCC--CCCEEEEHHHHHHHHHHHHHHCC
Q ss_conf 6788867---8---72641488543224366999977997677365435654467--88268888898999999998749
Q gi|254781024|r 64 IGIDSLL---P---RWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDN--KEHYIVSLGQVCRWLKNKAEALG 135 (554)
Q Consensus 64 ~aL~eL~---P---d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~--~g~yiv~r~~fd~~L~~~Ae~~G 135 (554)
.+++.|. | +|.+..|.|+.+.- +....+...++-+.+ +..+- ..+..+.+. +-+-|.++....+
T Consensus 111 ~~V~~l~~~ap~~I~~L~~~Gv~Fdr~~--~g~l~~~~~GGhS~~-----Ri~ha~d~TG~~i~~~-l~~~L~~~~~~~~ 182 (638)
T PRK07573 111 ANVYRLAEVSVNIIDQCVAQGVPFAREY--GGLLANRSFGGAQVS-----RTFYARGQTGQQLLLG-AYSALSRQIAAGT 182 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCCCCC-----EEEECCCCCHHHHHHH-HHHHHHHHHHCCC
T ss_conf 9999999988999999997599875689--986604456676652-----4773289616899999-9999999873389
Q ss_pred CEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHH
Q ss_conf 53306822434776277620145412432443466578756302677425786066443255
Q gi|254781024|r 136 VEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLT 197 (554)
Q Consensus 136 vei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~la 197 (554)
++++..+.+.+++. ++|++.|+...+.-. ..-..+.|+.||.|.|-.|.+-
T Consensus 183 I~~~~~~~~~dLi~-~dg~~~Gv~~~d~~~----------G~~~~~~AkaVILATGG~g~ly 233 (638)
T PRK07573 183 VELFTRTEMLDLVV-VDGRARGIVARNLVT----------GEIERHAADAVVLATGGYGNVF 233 (638)
T ss_pred CEEEECEEEEEEEE-ECCEEEEEEEEECCC----------CCEEEEECCEEEECCCCCCCCC
T ss_conf 88993579999899-899999999996589----------9489997167998578575121
No 131
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR014006 Succinate:quinone oxidoreductase (1.3.5.1 from EC) refers collectively to succinate:quinone reductase (SQR, or Complex II) and quinol:fumarate reductase (QFR) . SQR is found in aerobic organisms, and catalyses the oxidation of succinate to fumarate in the citric acid cycle and donates the electrons to quinone in the membrane. QFR can be found in anaerobic cells respiring with fumarate as terminal electron acceptor. SQR and QFR are very similar in composition and structure, despite catalysing opposite reactions in vivo. They are thought to have evolved from a common ancestor, and in Escherichia coli they are capable of functionally replacing each other . Succinate:quinone oxidoreductases consist of a peripheral domain, exposed to the cytoplasm in bacteria and to the matrix in mitochondria, and a membrane-integral anchor domain that spans the membrane (Fig. 1). The peripheral part, which contains the dicarboxylate binding site, is composed of a flavoprotein subunit, with one covalently bound FAD, and an iron-sulphur protein subunit containing three iron-sulphur clusters. The membrane-integral domain functions to anchor the peripheral domain to the membrane and is required for quinone reduction and oxidation. The anchor domain shows the largest variability in composition and primary sequence, being composed either of one large subunit, or two smaller subunits, which may, or may not, contain protoheme groups. This entry represents the flavoprotein subunit found in both the SQR and QFR enzymes. This subunit contains an N-terminal domain which binds the FAD cofactor, a central catalytic domain with an unsual fold, and a C-terminal domain whose role is unclear , , . The dicarboxylate binding site is located between the FAD and catalytic domains..
Probab=99.20 E-value=3.2e-10 Score=89.91 Aligned_cols=173 Identities=23% Similarity=0.332 Sum_probs=116.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CCCEEEEEECCCCCCCCCCCC-----CEEC-HH---------HHH------------
Q ss_conf 7799989768999999999808-997399997867789864027-----4033-36---------788------------
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQIN-PHLSVVILEKSAEVGAHILSG-----AIID-PI---------GID------------ 67 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g-~~l~VlvlEK~~~pG~~i~sG-----~vl~-p~---------aL~------------ 67 (554)
||||||||-||+-||+.++|.| +.++|+||=|=--.|+|.++. |+|. .. +.|
T Consensus 1 D~vIVGaGgAGlRAA~e~a~~gPp~~~~AvisKvyP~RSHtvAAQGG~~Aal~~n~d~~D~~e~H~yDTVKGsDyLaDQD 80 (636)
T TIGR01812 1 DVVIVGAGGAGLRAAVEAAKAGPPNLNVAVISKVYPTRSHTVAAQGGIAAALANNVDPDDSWEWHAYDTVKGSDYLADQD 80 (636)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHH
T ss_conf 97888186689999999973577961079995569885201535678999957786432072123041101442132589
Q ss_pred --HHC----CCH---HHHCCCCCCCEEEEEEEEEECCCCCEECCCCCC--CCCCCCCCCEEEE-------HH--------
Q ss_conf --867----872---641488543224366999977997677365435--6544678826888-------88--------
Q gi|254781024|r 68 --SLL----PRW---REDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCL--PDFMDNKEHYIVS-------LG-------- 121 (554)
Q Consensus 68 --eL~----Pd~---~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~~~--p~~~~~~g~yiv~-------r~-------- 121 (554)
|+| |+- .|..|.|+.+--+.|++-..+.++..-....+. .-..+..|+...+ |-
T Consensus 81 Ave~~~~~AP~~v~eLe~wG~PfSR~~kGDRmaiinaqkttiteeDfRDG~IaQR~FGG~~~~~Gg~~a~RTcyAADkTG 160 (636)
T TIGR01812 81 AVEYMCKEAPKAVLELERWGVPFSRLPKGDRMAIINAQKTTITEEDFRDGRIAQRPFGGASFDYGGAAARRTCYAADKTG 160 (636)
T ss_pred HHHHHHHHCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 99999851517899997378985678677647776245420020115588353437888886556622213420012113
Q ss_pred -HHHHHHHHHHHHC-CCEECCCCEEEEEEECCCC--CEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHH
Q ss_conf -9899999999874-9533068224347762776--20145412432443466578756302677425786066443255
Q gi|254781024|r 122 -QVCRWLKNKAEAL-GVEIYCGFTATEIYYGKKG--EALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLT 197 (554)
Q Consensus 122 -~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~e~g--~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~la 197 (554)
.+-+-|.++.... +|++|..+-|.+++.++++ ++.||..-++-. ..-..|+||.||+|.|=.|.+=
T Consensus 161 h~~LHTLye~~l~~~~V~ff~E~fa~~L~~~~~~GP~~~Gvva~~l~~----------G~~~~~~AKaVv~ATGG~GR~Y 230 (636)
T TIGR01812 161 HALLHTLYEQCLKLDGVEFFNEYFALDLILDQDGGPRVRGVVAYDLKT----------GEIVFFRAKAVVLATGGYGRVY 230 (636)
T ss_pred HHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCCEEEEEEEEEECC----------CEEEEEEECCEEEEECCCHHHH
T ss_conf 147898999985379942753888877887458986799999998058----------8089996074898306510210
Q ss_pred H
Q ss_conf 4
Q gi|254781024|r 198 R 198 (554)
Q Consensus 198 k 198 (554)
+
T Consensus 231 ~ 231 (636)
T TIGR01812 231 K 231 (636)
T ss_pred C
T ss_conf 3
No 132
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.19 E-value=2.2e-08 Score=77.23 Aligned_cols=36 Identities=33% Similarity=0.586 Sum_probs=33.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 36477999897689999999998089973999978677
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
|.|||||||||-||++||++|++.| .+|+|+=++.-
T Consensus 1 mk~DvlVIGgGLAGl~aAl~~a~~G--~~v~lvs~Gqg 36 (425)
T PRK05329 1 MKFDVVVIGGGLAGLTCALALAEAG--KRCAIVAKGQS 36 (425)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCC
T ss_conf 9877899995299999999999779--93899927843
No 133
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.19 E-value=2.1e-08 Score=77.32 Aligned_cols=39 Identities=33% Similarity=0.573 Sum_probs=35.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 779998976899999999980899739999786778986
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAH 54 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~ 54 (554)
.|||||+||||.+||.+|+|++++.+|+++||...+...
T Consensus 2 kvVIIG~G~AG~saA~~l~~~~~~~~I~v~e~~~~~~y~ 40 (443)
T PRK09564 2 KIIIIGGTAAGTSAAAKAKRLNKELEIVVYEKTDIISFG 40 (443)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
T ss_conf 699999609999999999814939999999488987776
No 134
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.19 E-value=5.8e-10 Score=88.13 Aligned_cols=147 Identities=21% Similarity=0.302 Sum_probs=73.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEE
Q ss_conf 36477999897689999999998089973999978677898640274033367888678726414885432243669999
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWF 92 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~ 92 (554)
.+||||||||||||.+||++++++| ++|+|+||...+|.--+-=+++..++|-+.--........ ....+.
T Consensus 3 ~~yDvvVIGgGpaG~~aA~~aa~~G--~kV~liE~~~~~GGtCln~GCIPsK~Ll~~a~~~~~~~~~------~~~Gi~- 73 (472)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLG--LETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKAL------AEHGIV- 73 (472)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHH------HHCCEE-
T ss_conf 7787899998889999999999789--9699996379976561235803229999999999998676------745772-
Q ss_pred ECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 77997677365435654467882688888989999999987495330682243477627762014541243244346657
Q gi|254781024|r 93 LNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQG 172 (554)
Q Consensus 93 l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~ 172 (554)
...-.+.++ ..+..... + ..++..-+....+..|++++.|... ..++ ..+.+...+ |
T Consensus 74 -~~~~~~d~~-----~~~~~~~~-~--v~~l~~~~~~~~~~~gV~~i~G~a~---f~~~--~~v~v~~~~-g-------- 130 (472)
T PRK06467 74 -FGEPKIDID-----KMRARKEK-V--VKQLTGGLAGMAKGRKVTVVNGLGK---FTGG--NTVEVTGED-G-------- 130 (472)
T ss_pred -CCCCCCCHH-----HHHHHHHH-H--HHHHHHHHHHHHHHCCCEEECCCEE---ECCC--CEEEEECCC-C--------
T ss_conf -588742799-----99999999-9--9999889999998779569715067---5489--803643388-8--------
Q ss_pred CCCCCEEEEEEEEEEEECCCCCH
Q ss_conf 87563026774257860664432
Q gi|254781024|r 173 KHYIAPMLLLSKYMLVGEGACGS 195 (554)
Q Consensus 173 ~~~~~g~~i~Ak~vI~AdG~~s~ 195 (554)
....++|+.+|.|.|.+..
T Consensus 131 ----~~~~l~a~~ivIATGs~p~ 149 (472)
T PRK06467 131 ----KTEVIEFDNAIIAAGSRPI 149 (472)
T ss_pred ----CEEEEEEEEEEECCCCCCC
T ss_conf ----6489987799994699665
No 135
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3e-10 Score=90.08 Aligned_cols=118 Identities=29% Similarity=0.410 Sum_probs=73.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEE
Q ss_conf 36477999897689999999998089973999978677898640274033367888678726414885432243669999
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWF 92 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~ 92 (554)
+.|||+||||||||++||++++|.+ +++.||+.+..+| | -+.... .+.
T Consensus 2 ~~~DviIIGaGPAGl~AAiya~r~~--l~~~li~~~~~~g-----g-~~~~~~---~ve--------------------- 49 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAG--LKVVLILEGGEPG-----G-QLTKTT---DVE--------------------- 49 (305)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCCEEEEECCCCC-----C-CCCCCE---EEC---------------------
T ss_conf 4228899895889999999998758--9856999478758-----8-634433---335---------------------
Q ss_pred ECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 77997677365435654467882688888989999999987495330682243477627762014541243244346657
Q gi|254781024|r 93 LNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQG 172 (554)
Q Consensus 93 l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~ 172 (554)
.+|. .|. .++-..+-.-+.++|+..|+++.. ..|..+.. .+....+.|.+
T Consensus 50 -------nypg--~~~--------~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~--~~~~F~v~t~~---------- 99 (305)
T COG0492 50 -------NYPG--FPG--------GILGPELMEQMKEQAEKFGVEIVE-DEVEKVEL--EGGPFKVKTDK---------- 99 (305)
T ss_pred -------CCCC--CCC--------CCCHHHHHHHHHHHHHHCCEEEEE-EEEEEEEE--CCCEEEEEECC----------
T ss_conf -------7679--867--------775089999999777634708888-99899860--68609999479----------
Q ss_pred CCCCCEEEEEEEEEEEECCCCCHHHH
Q ss_conf 87563026774257860664432554
Q gi|254781024|r 173 KHYIAPMLLLSKYMLVGEGACGSLTR 198 (554)
Q Consensus 173 ~~~~~g~~i~Ak~vI~AdG~~s~lak 198 (554)
+. ++||.+|.|.|+....-+
T Consensus 100 -----~~-~~ak~vIiAtG~~~~~~~ 119 (305)
T COG0492 100 -----GT-YEAKAVIIATGAGARKLG 119 (305)
T ss_pred -----CE-EEEEEEEECCCCCCCCCC
T ss_conf -----74-986569996177656788
No 136
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.18 E-value=1.8e-10 Score=91.60 Aligned_cols=130 Identities=18% Similarity=0.302 Sum_probs=70.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC-CCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEE
Q ss_conf 36477999897689999999998089973999978677-89864027403336788867872641488543224366999
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE-VGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYW 91 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~-pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~ 91 (554)
|+||||||||||||.+||++++++| ++|+|+||... .|.-.+--+++..++|-.
T Consensus 2 ~~YDviIIGaGpaG~~AA~~aa~~G--~kV~liE~~~~~~GGtc~n~GCiPsk~ll~----------------------- 56 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAG--KKVALVERSKAMYGGTCINIGCIPTKTLLV----------------------- 56 (438)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCCEEEEECCCCCHHHHH-----------------------
T ss_conf 9558799997889999999999788--949999469987685547787040157898-----------------------
Q ss_pred EECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCC
Q ss_conf 97799767736543565446788268888898999999998749533068224347762776201454124324434665
Q gi|254781024|r 92 FLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQ 171 (554)
Q Consensus 92 ~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~ 171 (554)
.....+.++. .+..... + ..++..-.....+..|++++.+...- . +...+.|..++
T Consensus 57 --~a~~~~~~~~-----~~~~k~~-~--~~~l~~~~~~~~~~~gv~~~~g~a~~----~-~~~~v~V~~~~--------- 112 (438)
T PRK07251 57 --AAEKNLSFEE-----VMATKNT-V--TSRLNAKNYAMLAGTGVDIYDAEAHF----V-SNKVIEVTAGD--------- 112 (438)
T ss_pred --HHHCCCCHHH-----HHHHHHH-H--HHHHHHHHHHHHHHCCCEEEEEEEEE----C-CCCEEEEECCC---------
T ss_conf --7662799999-----9999999-9--99998899999974894899979998----1-68489995599---------
Q ss_pred CCCCCCEEEEEEEEEEEECCCCCHH
Q ss_conf 7875630267742578606644325
Q gi|254781024|r 172 GKHYIAPMLLLSKYMLVGEGACGSL 196 (554)
Q Consensus 172 ~~~~~~g~~i~Ak~vI~AdG~~s~l 196 (554)
...+++++.+|.|.|.+...
T Consensus 113 -----~~~~~~a~~iIIATGs~p~~ 132 (438)
T PRK07251 113 -----EKQELTAETIVINTGAVSNV 132 (438)
T ss_pred -----CEEEEEEEEEEECCCCCCCC
T ss_conf -----72999976898726787866
No 137
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.18 E-value=9.9e-09 Score=79.58 Aligned_cols=297 Identities=21% Similarity=0.250 Sum_probs=139.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC-C-CCCE---E---------------------CHHHHHH
Q ss_conf 47799989768999999999808997399997867789864-0-2740---3---------------------3367888
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI-L-SGAI---I---------------------DPIGIDS 68 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i-~-sG~v---l---------------------~p~aL~e 68 (554)
+||||||+|.||++||+.+++.| .+|+|++|... +++. . .|++ + ++..++.
T Consensus 2 tdVlVVGsG~AGl~AAl~a~~~g--~~v~li~k~~~-~~~s~~A~gGi~~~~~~~Ds~e~h~~Dt~~~G~gl~d~~lv~~ 78 (464)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKG--FDVTVIGPGSK-DSNSYLAQAGIAFPLLEGDSIRAHVLDTIRAGKYINDEEVVWN 78 (464)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCC-CCCHHHHHHHCCEECCCCCCHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 87999897699999999999749--96999958999-9514776112064028999999999999995589888999999
Q ss_pred HC---C---CHHHHCCCCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCC
Q ss_conf 67---8---72641488543224366999977997677365435654467882688888989999999987495330682
Q gi|254781024|r 69 LL---P---RWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGF 142 (554)
Q Consensus 69 L~---P---d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~ 142 (554)
|. | +|.+..|.|+...- ..+.-+.+-... ..+. .-..+-+.|.+++.+.++++....
T Consensus 79 l~~~a~~~i~~L~~~Gv~f~~~~---------~~GGhs~~R~~~---~~~~-----tG~~i~~~L~~~~~~~~v~~~~~~ 141 (464)
T PRK08401 79 VISKSTEAYDFLTSLGVEFTGNE---------LEGGHSFPRVFT---IKNE-----TGKHLIPILEKHARELGVNFIRGF 141 (464)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCC---------CCCCCCCCEEEE---ECCC-----CHHHHHHHHHHHHHHCCCEEEHHH
T ss_conf 99999999999997699887788---------789743320267---3676-----589999999999997398578676
Q ss_pred EEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCC-CCCCHHHHHHHHH-
Q ss_conf 24347762776201454124324434665787563026774257860664432554211224899-8888989988988-
Q gi|254781024|r 143 TATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLM-DGRQPQKFGLGIK- 220 (554)
Q Consensus 143 ~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~-~~~~p~~~~~gvk- 220 (554)
+.+++ .++|++.|+... +..++++.||.|.|-.+.+-+.- .. ....-..++.+.+
T Consensus 142 -~~~l~-~~dg~v~Gv~~~----------------ge~i~~~aVIlATGG~g~l~~~t-----t~~~~~tGdg~~~a~~a 198 (464)
T PRK08401 142 -AEELA-IKNGKAYGVFLN----------------GELLKFDAVIIASGGFSGLYKFT-----AGSPLNLGTLIGDAALK 198 (464)
T ss_pred -HHHHE-EECCEEEEEEEC----------------CEEEEECEEEECCCCCCCCCCCC-----CCCCCCCCHHHHHHHHC
T ss_conf -57570-228989999988----------------88988565998999865340135-----79999850999999985
Q ss_pred -------HHHHHCCCCCCCCEEEEEECCCCCCCC-CCCEEEEECCCCEEEEEEEECCCC------------CCCCCCHHH
Q ss_conf -------887516566788808995043476876-641257664798059999832666------------566889889
Q gi|254781024|r 221 -------ELWKIKPQYHRRGLALHSIGWPLDMNT-SGGGFVYHFDDNLVSIGFVLHLDY------------RNPWISAYE 280 (554)
Q Consensus 221 -------e~~ei~~~~~~~G~~~h~~g~~~~~~~-~gggwiy~~~d~~~~iG~v~~ld~------------~~~~~~~~~ 280 (554)
|.+++.| .+.... ..+-+.... .-|+.+... ++.-.+.-...-|. +..+++...
T Consensus 199 Ga~l~dmEfiQfhP----tg~~~~-~~~LisEa~rg~G~~L~n~-~GerFm~ela~RDvvsrai~~e~~~g~gv~lD~~~ 272 (464)
T PRK08401 199 GVPLRDLEFVQFHP----TGFIGK-RTYLISEAVRGAGAKLVTG-DGERFVNELETRDIVARAIYRKMLEGKGVFLDATG 272 (464)
T ss_pred CCCCCCCHHHHHCC----CCCCCC-CCCEECHHHCCCCCEEECC-CCCCHHCCCCCHHHHHHHHHHHHHHCCCEEECCCC
T ss_conf 98715817876468----654588-8635415541568787477-74782203785778999999999808971025775
Q ss_pred HHHHHH-HCCCHHHHHCCC------CE--ECCCCEECCCCCCCCC--CCCCCCCEEEECCCC-CCC---CCCCCCCHHHH
Q ss_conf 999986-080045650388------26--3035134005421248--742308879961232-331---36643522689
Q gi|254781024|r 281 ELQRFK-THPDIRIIFTEG------ER--LEYGARVISEGGWQSV--PKLSFPGGSLIGCAA-GFV---NLLRIKGSHNA 345 (554)
Q Consensus 281 ~lq~fk-~hp~i~~~l~gg------~~--~~yga~~ip~gg~~s~--pk~~~~g~lLvGDAA-G~v---nP~~g~GI~~A 345 (554)
++.++ ..|.+...+... +. +.-.+| ..+||.... -+..-+|+.-+|++| |=+ |-+-+..+--+
T Consensus 273 -i~~~~~~~p~~~~~~~~~giD~~~~~i~V~P~~H-y~mGGI~iD~~~~T~I~GLyAaGE~a~gGvHGaNRLggNSLle~ 350 (464)
T PRK08401 273 -IEDFKRRFPYIYSFLRREGIDPSKDLIPVTPVAH-YTIGGISVDIFYRTGIKGLYAIGEAASNGFHGANRLASNSLLEC 350 (464)
T ss_pred -HHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC-EECCCEEECCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf -9999987469999999819996656044035668-75389887856676778647755744577776531145568999
Q ss_pred HHHHHHHHHHHHHHHHC
Q ss_conf 99999999999998745
Q gi|254781024|r 346 IISGMLAAEKIVERLSN 362 (554)
Q Consensus 346 m~SG~lAAEai~eal~~ 362 (554)
+..|+.||+.+......
T Consensus 351 ~VfG~~aa~~~~~~~~~ 367 (464)
T PRK08401 351 IVSGLEVARTISREKPK 367 (464)
T ss_pred HHHHHHHHHHHHHCCCC
T ss_conf 99999999986440353
No 138
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.17 E-value=9.6e-10 Score=86.63 Aligned_cols=168 Identities=27% Similarity=0.311 Sum_probs=101.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC---CCCCE---E--CHH--------HHHHHCCCHHHH
Q ss_conf 3647799989768999999999808997399997867789864---02740---3--336--------788867872641
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI---LSGAI---I--DPI--------GIDSLLPRWRED 76 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i---~sG~v---l--~p~--------aL~eL~Pd~~e~ 76 (554)
|+|||+|||||--|+++|+.|++..++++|+||||...++.+. -||-+ + .|. +-+...=+|-+.
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 83229998973898999999997388965999970576533345676534425544898551339999999999999998
Q ss_pred CCCCCCCE-----E-EEE------------------EEEEECCCCCEECCCCCCCCCC-------CCCCCEEEEHHHHHH
Q ss_conf 48854322-----4-366------------------9999779976773654356544-------678826888889899
Q gi|254781024|r 77 KGHPFHTV-----V-KRD------------------LYWFLNAQRSIQIPHFCLPDFM-------DNKEHYIVSLGQVCR 125 (554)
Q Consensus 77 ~g~pl~~~-----v-~~d------------------~~~~l~~~~~~~~p~~~~p~~~-------~~~g~yiv~r~~fd~ 125 (554)
.+.|.... + .++ .+..++......+ .|..+ .-..+.+|+-..+.+
T Consensus 82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~----eP~l~~~~~aal~~p~~giV~~~~~t~ 157 (429)
T COG0579 82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKEL----EPLLNEGAVAALLVPSGGIVDPGELTR 157 (429)
T ss_pred HCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHH----CCCCCCCCEEEEECCCCCEECHHHHHH
T ss_conf 4986123680899978277899999999886579861442699999862----965443651468757775076899999
Q ss_pred HHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEE-EEEEEEEEECCCCCH-HHHHH
Q ss_conf 9999998749533068224347762776201454124324434665787563026-774257860664432-55421
Q gi|254781024|r 126 WLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPML-LLSKYMLVGEGACGS-LTRQL 200 (554)
Q Consensus 126 ~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~-i~Ak~vI~AdG~~s~-lak~l 200 (554)
-|++.|++.|+++..++.|..+-...+| +..+.|.. |.+ ++||+||.|-|-.+. |++++
T Consensus 158 ~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~---------------g~~~~~ak~Vin~AGl~Ad~la~~~ 218 (429)
T COG0579 158 ALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSN---------------GEETLEAKFVINAAGLYADPLAQMA 218 (429)
T ss_pred HHHHHHHHCCCEEEECCEEEEEEEECCC-EEEEEECC---------------CCEEEEEEEEEECCCHHHHHHHHHH
T ss_conf 9999999769789934836478992796-59998347---------------9678995689989745179999972
No 139
>TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form. ; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=99.17 E-value=7.4e-10 Score=87.39 Aligned_cols=173 Identities=28% Similarity=0.407 Sum_probs=111.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC--CCEECH--------HHHHHH--CCCHH-------
Q ss_conf 64779998976899999999980899739999786778986402--740333--------678886--78726-------
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILS--GAIIDP--------IGIDSL--LPRWR------- 74 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~s--G~vl~p--------~aL~eL--~Pd~~------- 74 (554)
..||+|||||||||+||...++.| +||+|+|-..++|.-.++ |+-|+- ..+.|| .||-+
T Consensus 176 HCDVLVVGaGPAGLAAA~aAa~~G--ArViL~DE~~~~GGsL~~~~g~~IDG~PA~~W~~~t~aeL~a~~~v~~L~RTT~ 253 (1026)
T TIGR01372 176 HCDVLVVGAGPAGLAAALAAARAG--ARVILVDEQAEAGGSLLSEAGETIDGKPAADWAAATVAELEALPEVTLLPRTTA 253 (1026)
T ss_pred ECCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCE
T ss_conf 204788788967999999996479--889997067657775567787601780189999999999741898167435405
Q ss_pred ------------H--H--CCCCCCCEEEEEEEEEECC------CCCEE----CCCCCCCCCC------------------
Q ss_conf ------------4--1--4885432243669999779------97677----3654356544------------------
Q gi|254781024|r 75 ------------E--D--KGHPFHTVVKRDLYWFLNA------QRSIQ----IPHFCLPDFM------------------ 110 (554)
Q Consensus 75 ------------e--~--~g~pl~~~v~~d~~~~l~~------~~~~~----~p~~~~p~~~------------------ 110 (554)
| . ...|- ..+..+++|-.-. +++++ +.+.+.|..|
T Consensus 254 ~G~YD~N~~g~~ER~~DHL~~P~-~g~~ReRlWrvRAkrvVLA~GA~ERPlVF~nND~PGvMlA~A~~~YlnRygV~pG~ 332 (1026)
T TIGR01372 254 FGYYDHNTVGALERVTDHLDAPA-KGVPRERLWRVRAKRVVLATGALERPLVFANNDRPGVMLAGAARTYLNRYGVAPGK 332 (1026)
T ss_pred EEEECCCEEEEEEEHHCCCCCCC-CCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 54514774787620113667788-74853305777253456605764477868831953233367999988875005487
Q ss_pred ------CCCCC---------------EEEE-HHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCC-CEEEEEEC--CCCC
Q ss_conf ------67882---------------6888-8898999999998749533068224347762776-20145412--4324
Q gi|254781024|r 111 ------DNKEH---------------YIVS-LGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKG-EALGILTG--EKGK 165 (554)
Q Consensus 111 ------~~~g~---------------yiv~-r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g-~vvgv~t~--~~G~ 165 (554)
.|+.+ -||| |.+.-.-+..+|.++|++|+.|..|.+.- ..- ++.+++.. +.+.
T Consensus 333 r~v~~TnNDSAy~~A~dL~~AG~~vvAi~D~R~~~~p~~~~~Ar~~g~~v~~G~~V~~t~--G~kdrv~~~~V~r~~~~~ 410 (1026)
T TIGR01372 333 RIVVATNNDSAYRAAADLAEAGLAVVAIVDARADVSPELVAEAREAGIEVIKGHAVAATE--GGKDRVSGVKVARVDLGT 410 (1026)
T ss_pred EEEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCEEEECCCEEECC--CCCCCEEEEEEEEECCHH
T ss_conf 058982173589999999964895069996178875247999987598598645022125--772101046888624400
Q ss_pred CCCCCCCCCCCCEEEEEEEEEEEECCCCCHHH
Q ss_conf 43466578756302677425786066443255
Q gi|254781024|r 166 NYDGTQGKHYIAPMLLLSKYMLVGEGACGSLT 197 (554)
Q Consensus 166 ~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~la 197 (554)
++. ......|.|+++.-+-|-+-+|-
T Consensus 411 ~~~------~g~~~~~~aD~LlvSGGw~P~vH 436 (1026)
T TIGR01372 411 DRE------SGAEERLDADALLVSGGWSPVVH 436 (1026)
T ss_pred CCC------CCCCCEEEEEEEEECCCCCCHHH
T ss_conf 113------57852478538987277662122
No 140
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.15 E-value=4.9e-10 Score=88.62 Aligned_cols=145 Identities=21% Similarity=0.346 Sum_probs=73.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHH---HCCCHHHHCCCCCCCEEEEEEE
Q ss_conf 6477999897689999999998089973999978677898640274033367888---6787264148854322436699
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDS---LLPRWREDKGHPFHTVVKRDLY 90 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~e---L~Pd~~e~~g~pl~~~v~~d~~ 90 (554)
+||||||||||||.+||++++++| ++|+|+||...=|.=.-.| ++..++|-+ ++...+.... .+.+
T Consensus 4 ~YDviVIG~GpaG~~AA~~aa~~G--~kv~liE~~~~GGtC~n~G-CiPsK~l~~~a~~~~~~~~~~~--------~~~~ 72 (464)
T PRK05976 4 EYDLLIIGGGPGGYVAAIRAGQLG--LKTALVEKGKLGGTCLHKG-CIPSKALIHSAEVFHTAKKFAG--------ASPL 72 (464)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCCEEEC-CCCHHHHHHHHHHHHHHHHHCC--------CCCC
T ss_conf 188999997889999999999789--9299997899797136368-3147999999999999865211--------1005
Q ss_pred EEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCC
Q ss_conf 99779976773654356544678826888889899999999874953306822434776277620145412432443466
Q gi|254781024|r 91 WFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGT 170 (554)
Q Consensus 91 ~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~ 170 (554)
-.......+.++. .+.... -++ .++.+-.....+..|++++.|... + -+...+.|.+.+.
T Consensus 73 gi~~~~~~~d~~~-----~~~~~~-~~~--~~l~~~~~~~l~~~~v~~i~G~a~--f---~~~~~v~V~~~~g------- 132 (464)
T PRK05976 73 GISVQAPALDFAK-----VQAWKD-GIV--DRLTKGVAALLKKGKVDVFHGIGR--I---LDGKTVSVETATG------- 132 (464)
T ss_pred CEECCCCCCCHHH-----HHHHHH-HHH--HHHHHHHHHHHHHCCCEEEEEEEE--E---CCCCCEEEECCCC-------
T ss_conf 3545676538999-----999999-999--998788999998689289972688--6---5898114442788-------
Q ss_pred CCCCCCCEEEEEEEEEEEECCCCCH
Q ss_conf 5787563026774257860664432
Q gi|254781024|r 171 QGKHYIAPMLLLSKYMLVGEGACGS 195 (554)
Q Consensus 171 ~~~~~~~g~~i~Ak~vI~AdG~~s~ 195 (554)
.+.+++|+.+|.|.|.+-.
T Consensus 133 ------~~~~i~a~~iIIATGs~P~ 151 (464)
T PRK05976 133 ------ENEMIIPENLLIATGSRPV 151 (464)
T ss_pred ------CCEEEEECEEEECCCCCCC
T ss_conf ------7369982669987688861
No 141
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.14 E-value=3.5e-10 Score=89.67 Aligned_cols=144 Identities=22% Similarity=0.306 Sum_probs=72.9
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHH---HCCCHHHHCCCCCCCEEEEE
Q ss_conf 036477999897689999999998089973999978677898640274033367888---67872641488543224366
Q gi|254781024|r 12 VFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDS---LLPRWREDKGHPFHTVVKRD 88 (554)
Q Consensus 12 ~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~e---L~Pd~~e~~g~pl~~~v~~d 88 (554)
+|||||||||+||||++||++++++| ++|+|+||+..=|.=.--| ++..++|-+ ++-..+......+.
T Consensus 2 ~~dYDviVIG~GpaG~~aA~~aa~~G--~kV~liE~~~~GGtC~n~G-CiPsK~l~~~a~~~~~~~~~~~~Gi~------ 72 (462)
T PRK06416 2 AFDYDVIVIGAGPGGYVAAIRAAQLG--LKVAIVEKEKLGGTCLNRG-CIPSKALLHAAERYREARHSEDFGIK------ 72 (462)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCEEEEC-CHHHHHHHHHHHHHHHHHHHHHCCCC------
T ss_conf 87799899998889999999999689--9399996799786204167-05069999999999999877626812------
Q ss_pred EEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCC
Q ss_conf 99997799767736543565446788268888898999999998749533068224347762776201454124324434
Q gi|254781024|r 89 LYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYD 168 (554)
Q Consensus 89 ~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~ 168 (554)
.....+.+. ..+..... ++ .++..-+....+..|++++.|... +.+++. +.|.+.+.
T Consensus 73 -----~~~~~~d~~-----~~~~~~~~-~~--~~l~~~~~~~l~~~gv~~i~G~a~----f~~~~~-v~V~~~~~----- 129 (462)
T PRK06416 73 -----AENVGFDFK-----KVQEWKNG-VV--ARLTGGVEGLLKKNKVDIIRGEAK----LVDPNT-VRVKGEDG----- 129 (462)
T ss_pred -----CCCCCCCHH-----HHHHHHHH-HH--HHHHHHHHHHHHHCCCEEEEEEEE----EECCCE-EEEEECCC-----
T ss_conf -----677640899-----99999999-99--998788999998779789983899----812760-45553699-----
Q ss_pred CCCCCCCCCEEEEEEEEEEEECCCCCHH
Q ss_conf 6657875630267742578606644325
Q gi|254781024|r 169 GTQGKHYIAPMLLLSKYMLVGEGACGSL 196 (554)
Q Consensus 169 ~~~~~~~~~g~~i~Ak~vI~AdG~~s~l 196 (554)
+.+++++.+|.|.|.+...
T Consensus 130 ---------~~~~~a~~iIIATGs~P~~ 148 (462)
T PRK06416 130 ---------EQTYTAKNIILATGSRPRE 148 (462)
T ss_pred ---------CEEEEECEEEECCCCCCCC
T ss_conf ---------6699948699998998877
No 142
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.14 E-value=6.2e-10 Score=87.92 Aligned_cols=38 Identities=39% Similarity=0.608 Sum_probs=34.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 4779998976899999999980899739999786778986
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAH 54 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~ 54 (554)
--|.|||+|||||+||+.|+++| ++|.|+||...||.-
T Consensus 328 KkVAIIGsGPAGLsaA~~Lar~G--~~VTVFE~~~~~GGl 365 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLTRNG--VAVTVYDRHPEIGGL 365 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CEEEEECCCCCCCCE
T ss_conf 98999897789999999999769--757995257778866
No 143
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.13 E-value=5.3e-10 Score=88.41 Aligned_cols=39 Identities=33% Similarity=0.530 Sum_probs=34.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 64779998976899999999980899739999786778986
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAH 54 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~ 54 (554)
..-|.|||+||||||||+.|+++| ++|.|+|+...+|.-
T Consensus 439 GkKVAVIGsGPAGLsaA~~La~~G--~~VtVFE~~~~~GG~ 477 (760)
T PRK12778 439 GIKVAVIGSGPAGLSFAGDMAKYG--YDVTVFEALHEIGGV 477 (760)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCE
T ss_conf 998999897789999999999779--906998058888975
No 144
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.13 E-value=4.9e-09 Score=81.71 Aligned_cols=36 Identities=39% Similarity=0.621 Sum_probs=32.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 77999897689999999998089973999978677898
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGA 53 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~ 53 (554)
-|+|||+||||||||+.|+++| .+|.|+||...+|.
T Consensus 539 KVAVIGsGPAGLaAA~~Lar~G--h~VTVFEk~~~~GG 574 (1012)
T TIGR03315 539 KVAVIGAGPAGLSAGYFLARAG--HPVTVFEKKEKPGG 574 (1012)
T ss_pred EEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCC
T ss_conf 8999897789999999999779--95699815897885
No 145
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit; InterPro: IPR011281 Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favoured under different circumstances. This entry represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in Escherichia coli and other proteobacteria, and in a few other lineages. However, excluded are all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.; GO: 0016627 oxidoreductase activity acting on the CH-CH group of donors, 0050660 FAD binding, 0006099 tricarboxylic acid cycle.
Probab=99.13 E-value=1e-09 Score=86.44 Aligned_cols=318 Identities=21% Similarity=0.294 Sum_probs=171.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC--CCEECHHHHHHHCC--CH----------------
Q ss_conf 64779998976899999999980899739999786778986402--74033367888678--72----------------
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILS--GAIIDPIGIDSLLP--RW---------------- 73 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~s--G~vl~p~aL~eL~P--d~---------------- 73 (554)
+|||||||||=||+-||..|++.| ++++||=|=--=|||+++ |++- .||--.=| +|
T Consensus 2 ~fDvviVGaGGAGlRaAl~la~~G--~~tAv~tKlfPTRSHTvAAQGGI~--AALgN~~PeD~W~WHmyDTVKGsDyLgD 77 (615)
T TIGR01816 2 KFDVVIVGAGGAGLRAALQLAKGG--LNTAVVTKLFPTRSHTVAAQGGIS--AALGNVEPEDDWRWHMYDTVKGSDYLGD 77 (615)
T ss_pred CCCEEEECCCCHHHHHHHHHHHCC--CEEEEEECCCCCCCCHHHHHHHHH--HHHHCCCCCCCCCCCCEEEEECCCCCHH
T ss_conf 422798868756899999863279--238898313688641122344578--8851778798863640310005652124
Q ss_pred -----------------HHHCCCCCCCEEEEEEEEEECCCCCEECCCC-CCCCCCCCCC-----CEEEEH--HHHHHHHH
Q ss_conf -----------------6414885432243669999779976773654-3565446788-----268888--89899999
Q gi|254781024|r 74 -----------------REDKGHPFHTVVKRDLYWFLNAQRSIQIPHF-CLPDFMDNKE-----HYIVSL--GQVCRWLK 128 (554)
Q Consensus 74 -----------------~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~-~~p~~~~~~g-----~yiv~r--~~fd~~L~ 128 (554)
.|-.|.|+.+ +++++|.--.+ .....+-+.+ -|+-+| .-+=+-|.
T Consensus 78 QDAiE~Mc~~apeAV~ELEhmG~PFsR----------T~~GkIyQR~FGG~t~dfGK~g~v~R~C~aADRTGH~~LhTLY 147 (615)
T TIGR01816 78 QDAIEYMCKEAPEAVLELEHMGMPFSR----------TEEGKIYQRPFGGHTRDFGKGGAVERACAAADRTGHAILHTLY 147 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCC----------CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 689988623135778766527779788----------8898332077869752115633232420001420257999987
Q ss_pred HHHHHCCCEECCCCEEEEEEECCCCC----EEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHC
Q ss_conf 99987495330682243477627762----01454124324434665787563026774257860664432554211224
Q gi|254781024|r 129 NKAEALGVEIYCGFTATEIYYGKKGE----ALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERY 204 (554)
Q Consensus 129 ~~Ae~~Gvei~~g~~v~~i~~~e~g~----vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~ 204 (554)
++....++++|..+.|.+++.++||. ++||..-+.-.. +-..|+||-||+|.|-.|++=+..-.-+
T Consensus 148 Q~nvk~~t~FF~E~~A~DL~~~~dG~sGPv~~GViA~~l~tG----------e~h~frAKaVvlATGG~GR~Y~sttnA~ 217 (615)
T TIGR01816 148 QQNVKADTSFFNEFYALDLIMEEDGESGPVCRGVIAYELETG----------EIHVFRAKAVVLATGGYGRIYKSTTNAH 217 (615)
T ss_pred HHHHHCCCCEEEHHHHHHHHHHCCCCCCCEEEEEEEEEECCC----------CEEEEEEEEEEEEECCCCHHHHHHHHHH
T ss_conf 666431874475022110465257895887998898760588----------8889954107897378640567664456
Q ss_pred ---------CCCCCCCHHHHHHHHHHHHHHCC-CCCCCCEEEEEECCC-----CCCCCCCCEEE--E-ECCCCEEE---E
Q ss_conf ---------89988889899889888875165-667888089950434-----76876641257--6-64798059---9
Q gi|254781024|r 205 ---------SLMDGRQPQKFGLGIKELWKIKP-QYHRRGLALHSIGWP-----LDMNTSGGGFV--Y-HFDDNLVS---I 263 (554)
Q Consensus 205 ---------~l~~~~~p~~~~~gvke~~ei~~-~~~~~G~~~h~~g~~-----~~~~~~gggwi--y-~~~d~~~~---i 263 (554)
-+|++.+-|++ |.|+..| +....| +..|.|-- |.+ ..|-=|+ | |.-+++++ |
T Consensus 218 t~TGDG~gi~~RaGlPlqDm-----EF~QFHPTGiagaG-~LiTEG~RGEGG~L~N-a~GERFMERYAP~~KDLAsRDvV 290 (615)
T TIGR01816 218 TLTGDGVGIVLRAGLPLQDM-----EFWQFHPTGIAGAG-VLITEGVRGEGGILLN-ANGERFMERYAPTAKDLASRDVV 290 (615)
T ss_pred HHHHHHHHHHHHCCCCCCCC-----CCCCCCHHHHHCCC-EEEEECCCCCCCEEEC-CCCCCCHHCCCCCCCCCCCCCHH
T ss_conf 55213688887268871132-----23123703341087-2675012147755246-88751020016751003686364
Q ss_pred ----------EEEEC--CCC---CCCCCCHHHHHHH----------HHHCCCHHHHHC---------CCCEECCCCEECC
Q ss_conf ----------99832--666---5668898899999----------860800456503---------8826303513400
Q gi|254781024|r 264 ----------GFVLH--LDY---RNPWISAYEELQR----------FKTHPDIRIIFT---------EGERLEYGARVIS 309 (554)
Q Consensus 264 ----------G~v~~--ld~---~~~~~~~~~~lq~----------fk~hp~i~~~l~---------gg~~~~yga~~ip 309 (554)
|-+++ .|+ +=.++++..+..| |..-..+++.++ ||=...|.+.+|.
T Consensus 291 aRsM~~Ei~EGRGvG~~KDhV~l~l~HLg~E~l~~kLPgI~E~a~~faGvDpvkdpiPV~PT~HY~MGGIPTn~~Gqvl~ 370 (615)
T TIGR01816 291 ARSMTLEIREGRGVGPNKDHVYLKLDHLGEEVLEEKLPGITELARTFAGVDPVKDPIPVLPTVHYMMGGIPTNYHGQVLR 370 (615)
T ss_pred HHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 66258876417896967588988613488578865287754899986388851078689886341576732156434886
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCC-CCCCCCCCHHHHH---HHHHHHHHHHHHHHHCCC
Q ss_conf 542124874230887996123233-1366435226899---999999999999874588
Q gi|254781024|r 310 EGGWQSVPKLSFPGGSLIGCAAGF-VNLLRIKGSHNAI---ISGMLAAEKIVERLSNGK 364 (554)
Q Consensus 310 ~gg~~s~pk~~~~g~lLvGDAAG~-vnP~~g~GI~~Am---~SG~lAAEai~eal~~g~ 364 (554)
.-+- --.-.-+|+.-+|++|+. |+-.+-=|.+.=+ .=|+-||..+.+.++.+.
T Consensus 371 ~~~~--g~~~~V~GLyA~GE~ACvSVHGANRLGtNSLLDLVVFGR~ag~~~~~~~ke~~ 427 (615)
T TIGR01816 371 KDGD--GNDSIVEGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYIKEGS 427 (615)
T ss_pred ECCC--CCCCCCCHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 4247--89861023766424520000253202112455788988999999999713777
No 146
>PRK06370 mercuric reductase; Validated
Probab=99.12 E-value=4.5e-09 Score=81.92 Aligned_cols=35 Identities=37% Similarity=0.648 Sum_probs=32.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 6477999897689999999998089973999978677
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
+||||||||||||++||++++++| ++|+|+||+..
T Consensus 4 ~YDviVIG~GpAG~~AA~~aa~~G--~~V~liEk~~~ 38 (459)
T PRK06370 4 RYDAVVIGAGQAGPPLAARAAGLG--MKVALIERGLL 38 (459)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCC
T ss_conf 175899998889999999999689--91999968997
No 147
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.12 E-value=3.2e-10 Score=89.88 Aligned_cols=142 Identities=23% Similarity=0.332 Sum_probs=71.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEEE
Q ss_conf 64779998976899999999980899739999786778986402740333678886787264148854322436699997
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFL 93 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~l 93 (554)
+||||||||||||.+||++++++| ++|+|+|+....|.--+-=+++..++|-+- -++.+.. ....+.
T Consensus 3 ~YDviVIG~GpaG~~aA~~aa~~G--~kValIE~~~~~GGtC~n~GCiPsK~Ll~~-a~~~~~~--------~~~~~~-- 69 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLG--LKVACVEGRSTLGGTCLNVGCMPSKALLHA-SELYEAA--------SGGEFA-- 69 (466)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCEEECCCHHHHHHHHHH-HHHHHHH--------HCCCCC--
T ss_conf 469899997889999999999789--939999679996465204575669999999-9999986--------344020--
Q ss_pred CCCCCEEC-CCCCCCCCCCCCCCEEEEHHHHH----HHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCC
Q ss_conf 79976773-65435654467882688888989----99999998749533068224347762776201454124324434
Q gi|254781024|r 94 NAQRSIQI-PHFCLPDFMDNKEHYIVSLGQVC----RWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYD 168 (554)
Q Consensus 94 ~~~~~~~~-p~~~~p~~~~~~g~yiv~r~~fd----~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~ 168 (554)
...+.. +....+..+ -.+.++. +.+....+..|++++.|..- +.+.+ .+.|...+ |
T Consensus 70 --~~g~~~~~~~d~~~~~-------~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~----f~~~~-~v~V~~~~-g---- 130 (466)
T PRK06115 70 --HLGIEVKPTLNLAQMM-------KQKDESVTALTKGVEFLFRKNKVDWIKGWGR----LDGVG-KVVVKAED-G---- 130 (466)
T ss_pred --CCCEEECCCCCHHHHH-------HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE----EECCC-CEEEECCC-C----
T ss_conf --3875734625899999-------9999999999999999986189479952599----95499-41898589-9----
Q ss_pred CCCCCCCCCEEEEEEEEEEEECCCCCH
Q ss_conf 665787563026774257860664432
Q gi|254781024|r 169 GTQGKHYIAPMLLLSKYMLVGEGACGS 195 (554)
Q Consensus 169 ~~~~~~~~~g~~i~Ak~vI~AdG~~s~ 195 (554)
....++|+.+|.|.|.+-.
T Consensus 131 --------~~~~i~a~~iiIATGs~P~ 149 (466)
T PRK06115 131 --------SETQLEAKDIVIATGSEPT 149 (466)
T ss_pred --------CEEEEEEEEEEECCCCCCC
T ss_conf --------7799995689999899876
No 148
>TIGR01789 lycopene_cycl lycopene cyclase; InterPro: IPR008461 This family consists of several bacterial Lycopene cyclase (CrtY) proteins. Lycopene cyclase is a key enzyme which converts the acyclic carotenoid lycopene into the cyclic carotenoid beta-carotene .; GO: 0045436 lycopene beta cyclase activity, 0016117 carotenoid biosynthetic process.
Probab=99.11 E-value=6.8e-09 Score=80.72 Aligned_cols=302 Identities=18% Similarity=0.175 Sum_probs=156.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC-CCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEEEC
Q ss_conf 7799989768999999999808997399997867789-864027403336788867872641488543224366999977
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG-AHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFLN 94 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG-~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~l~ 94 (554)
||||||||-||+--|.+|.++-+|++|+|||-+..+| .|.=| .++. -++++.-.++.
T Consensus 1 D~i~vGgGLAggLIALrL~~arPd~Ri~~IEa~~~igGNHtWS--ffd~--------------------Dls~~qhawla 58 (392)
T TIGR01789 1 DVIVVGGGLAGGLIALRLQDARPDLRILVIEAAASIGGNHTWS--FFDA--------------------DLSDAQHAWLA 58 (392)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEE--EECC--------------------CCCHHHHHHHH
T ss_conf 9788727335789999875259872899984377668875301--0036--------------------66743577765
Q ss_pred CCC--------CEECCCCCCCCCCCCCCCE-EEEHHHHHHHHHHHHHHCCCE-ECCCCEEEEEEECCCCCEEEEEECCCC
Q ss_conf 997--------6773654356544678826-888889899999999874953-306822434776277620145412432
Q gi|254781024|r 95 AQR--------SIQIPHFCLPDFMDNKEHY-IVSLGQVCRWLKNKAEALGVE-IYCGFTATEIYYGKKGEALGILTGEKG 164 (554)
Q Consensus 95 ~~~--------~~~~p~~~~p~~~~~~g~y-iv~r~~fd~~L~~~Ae~~Gve-i~~g~~v~~i~~~e~g~vvgv~t~~~G 164 (554)
+-. .+++|..- ..+ ..+| .+.=-+|-.-|. ++.+-. |..+.+|.++. .++ |...
T Consensus 59 ~lv~~~WpgGYeVRFp~~r--rkL--~taY~S~tStrf~e~l~---q~fpe~s~~~~r~a~~~~--Ad~----V~L~--- 122 (392)
T TIGR01789 59 DLVVYDWPGGYEVRFPKRR--RKL--KTAYLSMTSTRFREELE---QKFPERSVLLDRKAVEVD--ADA----VDLE--- 122 (392)
T ss_pred HHCCCCCCCCCEECCHHHH--HHH--HCCCCCCHHHHHHHHHH---HHCCCCEEEECCEEEEEE--ECE----EEEC---
T ss_conf 3401328897133355554--332--10221100177899999---876872056401567766--075----6626---
Q ss_pred CCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf 44346657875630267742578606644325542112248998888989988988887516566788808995043476
Q gi|254781024|r 165 KNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLD 244 (554)
Q Consensus 165 ~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~ 244 (554)
-..|.++..|+|+.||+|=|.+-+-+=.++ . |.| +|-.--..-|.+...|=...=|+--.-+
T Consensus 123 -------PsqyG~g~~i~A~~VID~Rg~~P~~~L~~G--------f--Q~F-lG~e~RL~~PHGl~~PiiMDATVdQ~~P 184 (392)
T TIGR01789 123 -------PSQYGNGRVIRARAVIDARGFKPSAALKVG--------F--QVF-LGREVRLAEPHGLESPIIMDATVDQSDP 184 (392)
T ss_pred -------CCCCCCCCEEEEEEEEECCCCCCCCCCCCC--------H--HHH-HCCCHHCCCCCCCCCCEEECCCHHHCCC
T ss_conf -------544689626764027725888777210253--------2--344-2320001578888887042562421177
Q ss_pred CC-CCCCEEEEECC--CCEEEEEEEECCCCC-CCCCCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCC---CCCCCC-
Q ss_conf 87-66412576647--980599998326665-66889889999986080045650388263035134005---421248-
Q gi|254781024|r 245 MN-TSGGGFVYHFD--DNLVSIGFVLHLDYR-NPWISAYEELQRFKTHPDIRIIFTEGERLEYGARVISE---GGWQSV- 316 (554)
Q Consensus 245 ~~-~~gggwiy~~~--d~~~~iG~v~~ld~~-~~~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~---gg~~s~- 316 (554)
++ ..||=|+|.++ -..+-| =+.-|. ++.+++...-|+....-. ++-.+.++.+....+++|. |.+.+.
T Consensus 185 hGnGGgYRFVY~LPL~~~~llI---EDTyY~D~~~L~~~~l~qrI~~YA~-a~gW~~~t~~r~EqGvLPv~l~GD~sa~~ 260 (392)
T TIGR01789 185 HGNGGGYRFVYVLPLDAQELLI---EDTYYADDAELDEEALRQRIDDYAL-AKGWQLATLVREEQGVLPVLLAGDSSAYV 260 (392)
T ss_pred CCCCCCEEEEEECCCCCCEEEE---EEEEECCCCCCCHHHHHHHHHHHHH-HCCCCHHHHHHHHCCCCCEEECCCCHHCC
T ss_conf 8798740278864798750136---6300058883878988547899986-42861012676535866230158730112
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-CCHHH-HHHHHHHHH
Q ss_conf 74230887996123233136643522689999999999999987458865-30367-899864204
Q gi|254781024|r 317 PKLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKH-DDPIE-IEDSWRQTQ 380 (554)
Q Consensus 317 pk~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~-~~l~~-Ye~~~~~s~ 380 (554)
.+.-.||...+|=+|||++|.||=-+-.|+.-+-..++--+ +.|++| +.+.+ .+..=++.|
T Consensus 261 ~~~~~PG~a~~Glragl~HP~TgYslp~AV~~Ad~l~a~~a---qrG~lss~~~~~~id~~ar~~W 323 (392)
T TIGR01789 261 DKVDIPGLAIAGLRAGLVHPTTGYSLPVAVEVADALAARDA---QRGALSSEDLREAIDSYARERW 323 (392)
T ss_pred CCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHHHH
T ss_conf 47788974013553024477413557899999999852010---0455677899999876555411
No 149
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.09 E-value=1.2e-08 Score=78.92 Aligned_cols=37 Identities=46% Similarity=0.761 Sum_probs=33.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 647799989768999999999808997399997867789
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG 52 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG 52 (554)
+||||||||||||++||++++++| ++|+|+||+..-|
T Consensus 4 ~YDviVIG~GpaG~~aA~~aa~~G--~kv~iiE~~~~GG 40 (467)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLG--LKTAVVEPKYWGG 40 (467)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCC
T ss_conf 687899997889999999999789--9099994899687
No 150
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.09 E-value=3.6e-08 Score=75.67 Aligned_cols=37 Identities=35% Similarity=0.570 Sum_probs=33.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC-CC
Q ss_conf 6477999897689999999998089973999978677-89
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE-VG 52 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~-pG 52 (554)
+||||||||||||.+||++++++| ++|+|+||... .|
T Consensus 3 ~yDviVIG~GpaG~~aA~~aa~~G--~~ValIEk~~~~~G 40 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAG--WRVALIEQSNAMYG 40 (441)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCC
T ss_conf 789899997889999999999789--92999975899877
No 151
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.08 E-value=3.6e-09 Score=82.59 Aligned_cols=154 Identities=24% Similarity=0.333 Sum_probs=83.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC--CCC---EE-CH-HHHHHHC------------C---
Q ss_conf 6477999897689999999998089973999978677898640--274---03-33-6788867------------8---
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL--SGA---II-DP-IGIDSLL------------P--- 71 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~--sG~---vl-~p-~aL~eL~------------P--- 71 (554)
..||||||+|.||++||+.+++.| .+|+|+||+...+.... .|+ ++ .+ ...+.++ |
T Consensus 15 ~tDVlVIG~G~AGl~AAi~a~~~G--~~V~vv~K~~~~~g~s~~a~gGi~a~~~~~~Ds~e~~~~dt~~~g~gl~d~~~v 92 (533)
T PRK07804 15 AADVVVIGTGVAGLTAALAAHRAG--RRVVVLSKAALTATATRYAQGGIAVVLPDPGDSVDAHVADTLAAGAGLCDPDAV 92 (533)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCHHHHHHHHEEECCCCCCCHHHHHHHHHHHCCCCCCHHHH
T ss_conf 268899996499999999998679--988999788999970799868778845799999999999999853787899999
Q ss_pred -----------CHHHHCCCCCCCEEEEEEEEEECCCCCEECC---CCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCE
Q ss_conf -----------7264148854322436699997799767736---54356544678826888889899999999874953
Q gi|254781024|r 72 -----------RWREDKGHPFHTVVKRDLYWFLNAQRSIQIP---HFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVE 137 (554)
Q Consensus 72 -----------d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p---~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gve 137 (554)
+|.+..|.++.+. +++.+.+. ....++..+..+. ..-..+-+.|.+++. +++
T Consensus 93 ~~l~~~a~~~v~~L~~~G~~f~~~----------~~G~~~~~~~gGh~~~R~~~~~~d--~~G~~i~~~l~~~~~--~v~ 158 (533)
T PRK07804 93 RSIVADGPRAVRELVALGARFDES----------PPGRWALTREGGHSRRRIVHAGGD--ATGAEVQRALDAAAR--MLD 158 (533)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCC----------CCCCEEEEECCCCCCCEEEECCCC--CCHHHHHHHHHHHHH--CCC
T ss_conf 999999999999999839836548----------998477773278766535613888--618999999999850--760
Q ss_pred ECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHH
Q ss_conf 30682243477627762014541243244346657875630267742578606644325
Q gi|254781024|r 138 IYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSL 196 (554)
Q Consensus 138 i~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~l 196 (554)
|+..+.+.+++. +++.+.++..... + .-..++||.||.|.|-.+.+
T Consensus 159 i~~~~~~~~ll~-d~~~v~gv~~~~~----~--------~~~~i~AkaVILATGG~g~l 204 (533)
T PRK07804 159 IRENHVALDLLH-DGRAVTGVLVGSP----D--------GVGAVHAPAVVLATGGLGQL 204 (533)
T ss_pred EEEEEEEEEEEE-CCCEEEEEEEEEC----C--------CEEEEECCEEEECCCCCCCC
T ss_conf 795069999980-6998999999848----9--------67999919799868997566
No 152
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.08 E-value=1.8e-09 Score=84.64 Aligned_cols=151 Identities=22% Similarity=0.210 Sum_probs=83.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC---CCEECHH----------H--HHHHCCCHHHHCCC
Q ss_conf 4779998976899999999980899739999786778986402---7403336----------7--88867872641488
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILS---GAIIDPI----------G--IDSLLPRWREDKGH 79 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~s---G~vl~p~----------a--L~eL~Pd~~e~~g~ 79 (554)
|||+|||||-+|+++|++|++.| ++|+||||+.... . -| ++.+.+. + -.+++.++.+..+.
T Consensus 1 yDv~VIGaGi~Gls~A~~La~~G--~~V~vle~~~~~~-g-aS~~n~G~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~ 76 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRG--LSVTVIERSSRAQ-G-ASVRNFGQVWPTGQAPGPAWDRARRSREIWLELAAKAGI 76 (365)
T ss_pred CCEEEECCHHHHHHHHHHHHHCC--CCEEEECCCCCCC-C-HHHHHHCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 92999993299999999999789--9499998999997-7-457642046015768489999999999999998873498
Q ss_pred CCCCEEEEEEEEEECCC-C-----------------CE----------ECCCCCCCC---CCCCCCCEEEEHHHHHHHHH
Q ss_conf 54322436699997799-7-----------------67----------736543565---44678826888889899999
Q gi|254781024|r 80 PFHTVVKRDLYWFLNAQ-R-----------------SI----------QIPHFCLPD---FMDNKEHYIVSLGQVCRWLK 128 (554)
Q Consensus 80 pl~~~v~~d~~~~l~~~-~-----------------~~----------~~p~~~~p~---~~~~~g~yiv~r~~fd~~L~ 128 (554)
++. +....++..+ . .. ..|....+. .........++-.++...|+
T Consensus 77 ~~~----~~G~l~~a~~~~~~~~l~~~~~~~~~~g~~~e~l~~~e~~~~~P~l~~~~~~ga~~~p~~g~~~p~~~~~~l~ 152 (365)
T TIGR03364 77 WVR----ENGSLHLARTEEELAVLEEFAATREPAEYRVELLTPAEVAAKFPALRLDGLRGGLHSPDELRVEPREAIPALA 152 (365)
T ss_pred CEE----ECCEEEEECCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCCCCEEEEECCCCCEECHHHHHHHHH
T ss_conf 979----4278999879899999999999999769964997799999866866677536999949987899999999999
Q ss_pred H-HHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCH
Q ss_conf 9-998749533068224347762776201454124324434665787563026774257860664432
Q gi|254781024|r 129 N-KAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGS 195 (554)
Q Consensus 129 ~-~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~ 195 (554)
+ .|+..||+++.++.|..+- . ..|.|.. -+++|+.||.|-|+.+.
T Consensus 153 ~~~a~~~Gv~~~~~t~V~~i~---~---~~V~T~~----------------G~i~a~~VVvaaG~~~~ 198 (365)
T TIGR03364 153 AYLAEQHGVEFHWNTAVTSVE---T---GTVRTSR----------------GDVHADQVFVCPGADFE 198 (365)
T ss_pred HHHHHHCCCEEEEEEEEEEEE---E---EEEEECC----------------CEEEEEEEEECCCCHHH
T ss_conf 999985792899312899620---1---4899789----------------28997669996684055
No 153
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.07 E-value=4.1e-09 Score=82.21 Aligned_cols=34 Identities=35% Similarity=0.650 Sum_probs=31.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 477999897689999999998089973999978677
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
||||||||||||.+||++++++| ++|+|+||+..
T Consensus 2 ~dviVIG~GpaG~~AA~~aa~~G--~kV~lIE~~~~ 35 (467)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLG--ADVTVIERDGV 35 (467)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCC
T ss_conf 81999874889999999999787--95999967997
No 154
>pfam07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=99.07 E-value=2.5e-09 Score=83.72 Aligned_cols=106 Identities=29% Similarity=0.371 Sum_probs=69.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEEECC
Q ss_conf 77999897689999999998089973999978677898640274033367888678726414885432243669999779
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFLNA 95 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~l~~ 95 (554)
||+||||||||++||.+|++.| ++|+|+|+..... +.+. .+|.+.
T Consensus 1 DVvIIGgG~AGl~aA~~l~~~g--~~v~lid~~~~~~--------~~~~----~i~~~~--------------------- 45 (277)
T pfam07992 1 DVVIIGGGPAGLAAAIYLARLG--LKVALIEKEGGTC--------YNRG----CIPKKL--------------------- 45 (277)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCE--------EEEC----CCCCCC---------------------
T ss_conf 9999997699999999998499--9799993799935--------7557----747711---------------------
Q ss_pred CCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 97677365435654467882688888989999999987495330682243477627762014541243244346657875
Q gi|254781024|r 96 QRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHY 175 (554)
Q Consensus 96 ~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~ 175 (554)
. ........+.....+++.+.+++++.+..|..+-. ++..+ .+.
T Consensus 46 ----------~--------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~~--~~~~v--~~~-------------- 89 (277)
T pfam07992 46 ----------L--------LEAAEVGKLDLRPLEQYKDEGIEVLLGTGVTAIDK--AGKKV--TLD-------------- 89 (277)
T ss_pred ----------C--------CCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEC--CCCEE--EEC--------------
T ss_conf ----------6--------45433145618999999875979996877999978--99989--987--------------
Q ss_pred CCEEEEEEEEEEEECCCC
Q ss_conf 630267742578606644
Q gi|254781024|r 176 IAPMLLLSKYMLVGEGAC 193 (554)
Q Consensus 176 ~~g~~i~Ak~vI~AdG~~ 193 (554)
.+.+++++++|.|.|++
T Consensus 90 -~g~~~~~d~lviAtG~~ 106 (277)
T pfam07992 90 -DGKELTYDKLVIATGAR 106 (277)
T ss_pred -CCCEEECCEEEECCCCC
T ss_conf -89399859999987998
No 155
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.05 E-value=1.3e-09 Score=85.71 Aligned_cols=38 Identities=34% Similarity=0.585 Sum_probs=34.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 4779998976899999999980899739999786778986
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAH 54 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~ 54 (554)
--|.|||+||||||||..|+++| ++|.|+||...+|.-
T Consensus 311 kKVAVIGsGPAGLaaA~~Lar~G--~~VTVfE~~~~~GGl 348 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARAG--VQVDVFDRHPEIGGM 348 (639)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCE
T ss_conf 98999897589999999999759--906999368888986
No 156
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.05 E-value=5.1e-10 Score=88.50 Aligned_cols=150 Identities=17% Similarity=0.291 Sum_probs=75.3
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC--C-CCCCCCCEE-----CHHHHHHH---CCCHHHHCCCC
Q ss_conf 0364779998976899999999980899739999786778--9-864027403-----33678886---78726414885
Q gi|254781024|r 12 VFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEV--G-AHILSGAII-----DPIGIDSL---LPRWREDKGHP 80 (554)
Q Consensus 12 ~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~p--G-~~i~sG~vl-----~p~aL~eL---~Pd~~e~~g~p 80 (554)
+.|||||||||||||.+||++++|+| ++|+|+|+.... + ...+.|.++ ..++|.+. +-.++.. +
T Consensus 39 ~~dYDvvVIG~GpgG~~AA~~Aa~~G--~kValIE~~~~~~~~~k~~lGGtCln~GCIPSK~L~~aa~~~~~~~~~--~- 113 (541)
T PTZ00052 39 TYDYDYVVIGGGPGGMASAKEAAAHG--AKVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGLMGSSFKLD--S- 113 (541)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHH--H-
T ss_conf 87799899997889999999999889--909999424556668717795011783628999999999999999756--8-
Q ss_pred CCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEE
Q ss_conf 43224366999977997677365435654467882688888989999999987495330682243477627762014541
Q gi|254781024|r 81 FHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILT 160 (554)
Q Consensus 81 l~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t 160 (554)
..+.+......+.+. ..+..... .+ ..+..-.....+..|++++.|... + .+.+.+....+
T Consensus 114 -------~~~Gi~~~~~~~d~~-----~l~~~~~~-~i--~~l~~~~~~~l~~~~V~~i~G~a~---f-~~~~tV~v~~~ 174 (541)
T PTZ00052 114 -------QMYGWKTSSLSHEWG-----KLVETVQS-HI--RSLNFSYRTGLRSSNVKYINGLAK---L-KDPHTVEYYLK 174 (541)
T ss_pred -------HHCCCCCCCCCCCHH-----HHHHHHHH-HH--HHHHHHHHHHHHHCCCEEEEEEEE---E-ECCCEEEEEEC
T ss_conf -------865832787631699-----99999999-99--998888998887689689985899---8-36987899842
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHH
Q ss_conf 2432443466578756302677425786066443255
Q gi|254781024|r 161 GEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLT 197 (554)
Q Consensus 161 ~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~la 197 (554)
++.|. ...++++.+|.|.|.+..+-
T Consensus 175 ~~~g~------------~~~i~a~~iIIATGS~P~iP 199 (541)
T PTZ00052 175 GDNSQ------------EETITSKYILIATGCRPHIP 199 (541)
T ss_pred CCCCC------------EEEEEEEEEEECCCCCCCCC
T ss_conf 58885------------27999527998578887678
No 157
>TIGR02352 thiamin_ThiO glycine oxidase ThiO; InterPro: IPR012727 This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as Escherichia coli that instead use tyrosine and the ThiH protein .; GO: 0016491 oxidoreductase activity, 0050660 FAD binding.
Probab=99.04 E-value=6.9e-08 Score=73.69 Aligned_cols=291 Identities=17% Similarity=0.157 Sum_probs=161.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC--CCCCCEECHHH-------------H--HHHCCCHHHHC--
Q ss_conf 79998976899999999980899739999786778986--40274033367-------------8--88678726414--
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAH--ILSGAIIDPIG-------------I--DSLLPRWREDK-- 77 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~--i~sG~vl~p~a-------------L--~eL~Pd~~e~~-- 77 (554)
|+|||||-.||+.|.+|++.| .+|.|+||....|.. -.-|+.|.|.+ + ..++|+|.+..
T Consensus 1 ~~ViGGGvIGL~~A~~L~~~G--~~V~l~~~~~~~g~~AS~~AaGMLAP~aE~~~~~~~~f~L~~~S~~~yp~~~~~l~~ 78 (357)
T TIGR02352 1 VLVIGGGVIGLSVAVELAERG--HSVTLLDRDPTVGGGASWAAAGMLAPVAEVEYAEDPLFDLALESLRLYPEWLEALKE 78 (357)
T ss_pred CEEECCHHHHHHHHHHHHHCC--CCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 978453187899999999749--938999658604567788664332432667467674789999999975999999873
Q ss_pred --CCCCCCEEEEEEEEEECCCC----------------CEECCC-------CCCC---------CCCCCCCCEEEEHHHH
Q ss_conf --88543224366999977997----------------677365-------4356---------5446788268888898
Q gi|254781024|r 78 --GHPFHTVVKRDLYWFLNAQR----------------SIQIPH-------FCLP---------DFMDNKEHYIVSLGQV 123 (554)
Q Consensus 78 --g~pl~~~v~~d~~~~l~~~~----------------~~~~p~-------~~~p---------~~~~~~g~yiv~r~~f 123 (554)
|.++. -....++.+..+. .+.+.. ...| -..+++. .|+=..|
T Consensus 79 ~tg~~~~--y~~~G~l~vA~~~~d~~~l~~~~~~~~~~G~~~~~l~~~~~r~~EP~L~~~~~~a~~~p~d~--~v~~r~l 154 (357)
T TIGR02352 79 LTGLDTG--YRQCGTLVVAFDEDDVEKLRQLADLQSATGMELEWLSGRALRRLEPYLSPGIRGAVYYPDDA--HVDPREL 154 (357)
T ss_pred CCCCCCE--EECCCEEEEECCCCHHHHHHHHHHHHHHHCCEEEECCHHHHHHHCCCCCCCCCEEEECCCCC--CCCCHHH
T ss_conf 1799512--74052589407871168889999998752860465077999984425242203345748652--3371899
Q ss_pred HHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHH
Q ss_conf 99999999874953306822434776277620145412432443466578756302677425786066443255421122
Q gi|254781024|r 124 CRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIER 203 (554)
Q Consensus 124 d~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~ 203 (554)
.+.|...++.+||+|+..+.|..+.. ...++..+.|.. ..+.|+.||+|.|+.+.=--. .-.
T Consensus 155 ~~AL~~~~~~lGv~i~~~~~v~~~~~-~~~~~~~~~~~~----------------~~~~ad~vV~A~G~wa~~l~~-p~~ 216 (357)
T TIGR02352 155 LKALVKALEKLGVEIIEEVEVQEIEA-RGEKVTAVVTSS----------------GDVQADQVVLAAGAWAGELLG-PGN 216 (357)
T ss_pred HHHHHHHHHHCCCEEEECCCEEEEEC-CCCEEEEECCCC----------------CCEECCEEEEECCCCHHHHHC-CCC
T ss_conf 99999999856947986253356432-676698852885----------------426557479935733344301-010
Q ss_pred CCCCCC-CCHHHHHHHHHHHHHHCC--CCCCCCEEEEEECCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCC---
Q ss_conf 489988-889899889888875165--66788808995043476876641257664798059999832666566889---
Q gi|254781024|r 204 YSLMDG-RQPQKFGLGIKELWKIKP--QYHRRGLALHSIGWPLDMNTSGGGFVYHFDDNLVSIGFVLHLDYRNPWIS--- 277 (554)
Q Consensus 204 ~~l~~~-~~p~~~~~gvke~~ei~~--~~~~~G~~~h~~g~~~~~~~~gggwiy~~~d~~~~iG~v~~ld~~~~~~~--- 277 (554)
+.+++. .++ + ..+++. .......+...+ .. -=.+|-|..+++..||--..-.-.++...
T Consensus 217 ~~~rpV~G~~------l--~~~~~~~~~~~~~~~~r~~v----~~---~~~YivPR~~G~l~vGAT~~~~~~~~~~~~~g 281 (357)
T TIGR02352 217 LPLRPVKGQM------L--RLEVPATLVPLLNRPVRAVV----YG---RRVYIVPRRDGRLVVGATSEEAGFDTTVTLEG 281 (357)
T ss_pred CCCCCCCEEE------E--EEEEECCCCCCCCCCEEEEE----CC---CCEEEEECCCCEEEEEEECCCCCCCCCCCHHH
T ss_conf 2556534058------9--98640766555774425641----38---83458775897589986323478899877789
Q ss_pred HHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCC---CCC-EEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 8899999860800456503882630351340054212487423---088-799612323313664352268999999999
Q gi|254781024|r 278 AYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKLS---FPG-GSLIGCAAGFVNLLRIKGSHNAIISGMLAA 353 (554)
Q Consensus 278 ~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~---~~g-~lLvGDAAG~vnP~~g~GI~~Am~SG~lAA 353 (554)
.++++.+ --.+-+.|.+.+..+..++.-|- .....|-+. .++ .+++ +| ..-.||-.|=.+|.+.+
T Consensus 282 ~~~Ll~~---A~~~~Pal~E~~~~e~~aGlRPg-tpD~~P~~g~~~~~~~l~~~---~G----HyRnGiLLaP~tA~~~~ 350 (357)
T TIGR02352 282 IKELLRD---AYTILPALKEAELLETWAGLRPG-TPDNLPYIGEHPEDRRLLIA---TG----HYRNGILLAPATAEVVA 350 (357)
T ss_pred HHHHHHH---HHHHCCCCCCCCEEEEEEECCCC-CCCCCCCCCCCCCCCCEEEE---EC----CHHHHHHHHHHHHHHHH
T ss_conf 9999987---87443500177100135622588-89878610245366864899---74----20005787389999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254781024|r 354 EKIV 357 (554)
Q Consensus 354 Eai~ 357 (554)
+.|.
T Consensus 351 ~~i~ 354 (357)
T TIGR02352 351 DLIL 354 (357)
T ss_pred HHHC
T ss_conf 9851
No 158
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.04 E-value=3.9e-09 Score=82.35 Aligned_cols=46 Identities=41% Similarity=0.692 Sum_probs=36.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC-CCCCEE
Q ss_conf 647799989768999999999808997399997867789864-027403
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI-LSGAII 61 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i-~sG~vl 61 (554)
+||||||||||||++||++++++| ++|+|+|+...++.+. +.|.++
T Consensus 4 ~YDviVIG~GpAG~~AA~~aa~~G--~kValiE~~~~~~g~~~~GGtC~ 50 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLG--LKVACIEAWKNPAGKPALGGTCL 50 (475)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CEEEEEEECCCCCCCCCCCCEEE
T ss_conf 188999998889999999999789--91999972577677888801447
No 159
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.03 E-value=2.6e-07 Score=69.76 Aligned_cols=34 Identities=35% Similarity=0.633 Sum_probs=31.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 477999897689999999998089973999978677
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
|||||||||-||++||++|++.| ++|+|+-++.-
T Consensus 1 fDviVIGgGLAGl~aai~~a~~G--~~~~lvs~Gqs 34 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAG--KKCAIIAAGQS 34 (419)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCC
T ss_conf 97899996199999999999779--95899937833
No 160
>PRK13984 putative oxidoreductase; Provisional
Probab=99.01 E-value=1.9e-09 Score=84.62 Aligned_cols=39 Identities=33% Similarity=0.497 Sum_probs=34.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 64779998976899999999980899739999786778986
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAH 54 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~ 54 (554)
.--|.|||+||||||||..|+++| ++|.|+||.+.+|.-
T Consensus 283 GKKVAVIGsGPAGLaaA~~Lar~G--h~VtVFE~~~~~GGl 321 (604)
T PRK13984 283 GKKVAIVGSGPAGLSAAYFLATMG--YEVEVYESLSKPGGV 321 (604)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEECCCCCCCCE
T ss_conf 998999898689999999999869--868997456778972
No 161
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.00 E-value=2.7e-06 Score=62.62 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=88.7
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCCCCC--CCCE---E---CH---------------------HHHHHHC---C---
Q ss_conf 999999998089973999978677898640--2740---3---33---------------------6788867---8---
Q gi|254781024|r 27 LAAAIRCKQINPHLSVVILEKSAEVGAHIL--SGAI---I---DP---------------------IGIDSLL---P--- 71 (554)
Q Consensus 27 ~saA~~La~~g~~l~VlvlEK~~~pG~~i~--sG~v---l---~p---------------------~aL~eL~---P--- 71 (554)
|+||+.|++.| ++|+||+|....+++.. .|++ + +| .+++.|. |
T Consensus 1 L~AAl~~~~~G--~~V~vv~K~~~~~sns~~AqGGi~aa~~~~~~~Ds~~~h~~DTl~aG~~l~d~~~V~~l~~~a~~~i 78 (570)
T PRK05675 1 MRAALQLAQGG--HKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIGDQDAIEYMCSVGPEAV 78 (570)
T ss_pred CHHHHHHHHCC--CCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 95789999769--9189997899998787887646787643799997889999999996177568999999999899999
Q ss_pred CHHHHCCCCCCCEEEEEEEEEECCCCCEECC--C-CCCCCCCCCCCCEEEE--HHHHHHHHHHHHHHCCCEECCCCEEEE
Q ss_conf 7264148854322436699997799767736--5-4356544678826888--889899999999874953306822434
Q gi|254781024|r 72 RWREDKGHPFHTVVKRDLYWFLNAQRSIQIP--H-FCLPDFMDNKEHYIVS--LGQVCRWLKNKAEALGVEIYCGFTATE 146 (554)
Q Consensus 72 d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p--~-~~~p~~~~~~g~yiv~--r~~fd~~L~~~Ae~~Gvei~~g~~v~~ 146 (554)
+|.+..|.|+.+.- +.-.+..+.+.-+.. . ...++. .+.-+ -..+-+-|.+++...++.++..+.+.+
T Consensus 79 ~~L~~~Gv~F~r~~--~G~~~~r~~Gg~s~~~~~g~~~~R~-----~~~~d~tG~~i~~~L~~~~~~~~i~~~~~~~~~~ 151 (570)
T PRK05675 79 FELEHMGLPFSRTE--TGRIYQRPFGGQSKDFGKGGQAART-----CAAADRTGHALLHTLYQGNLKNGTTFLNEWYAVD 151 (570)
T ss_pred HHHHHCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCEEEE-----EECCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEE
T ss_conf 99997699886699--9877124467600455667750257-----7623559999999999998717988999689876
Q ss_pred EEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHH
Q ss_conf 776277620145412432443466578756302677425786066443255
Q gi|254781024|r 147 IYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLT 197 (554)
Q Consensus 147 i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~la 197 (554)
++.+++|+++|+..-+... ..-..|+||.||.|.|-.+.+-
T Consensus 152 li~~~dg~v~Gv~~~d~~~----------g~~~~i~AkaVVLATGG~g~ly 192 (570)
T PRK05675 152 LVKNQDGAVVGVIAICIET----------GETVYIKSKATVLATGGAGRIY 192 (570)
T ss_pred EEECCCCEEEEEEEEECCC----------CCEEEEEEEEEEECCCCCCCCC
T ss_conf 5574798299999997589----------9789998346999169886656
No 162
>pfam01134 GIDA Glucose inhibited division protein A.
Probab=99.00 E-value=1.1e-09 Score=86.20 Aligned_cols=139 Identities=17% Similarity=0.307 Sum_probs=86.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEE-ECCCCCCCCCCC---CCEECHHHHHHH------CCCHHHHCCCCCCCEE
Q ss_conf 779998976899999999980899739999-786778986402---740333678886------7872641488543224
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVIL-EKSAEVGAHILS---GAIIDPIGIDSL------LPRWREDKGHPFHTVV 85 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~Vlvl-EK~~~pG~~i~s---G~vl~p~aL~eL------~Pd~~e~~g~pl~~~v 85 (554)
||+|||||.||+-||+.+||.| ++|+|+ .+...+|.-.|+ |++=.-+..+|+ +..+-+..
T Consensus 1 DViVIGgGhAG~EAA~aaAr~G--~~v~Lit~~~~~ig~msCnpSiGG~gkG~LvrEidaLgG~m~~~aD~s-------- 70 (391)
T pfam01134 1 DVIVIGGGHAGCEAALAAARMG--AKVLLITHNTDTIAELSCNPSIGGIAKGHLVREIDALGGLMGKAADKT-------- 70 (391)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH--------
T ss_conf 9799998789999999998689--968999734243158865655687530439999987258999999997--------
Q ss_pred EEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH-CCCEECCCCEEEEEEECCCCCEEEEEECCCC
Q ss_conf 366999977997677365435654467882688888989999999987-4953306822434776277620145412432
Q gi|254781024|r 86 KRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEA-LGVEIYCGFTATEIYYGKKGEALGILTGEKG 164 (554)
Q Consensus 86 ~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~-~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G 164 (554)
.-.+..|+..+. |.... ....++|..|-+++.+..+. .+.+++.+ .|++++. +++++.||.+.+
T Consensus 71 -~Iq~r~LN~skG--------pAv~a--~R~q~Dr~~y~~~~~~~l~~~~nl~i~~~-eV~~l~~-~~~~v~GV~~~~-- 135 (391)
T pfam01134 71 -GIQFRMLNTSKG--------PAVRA--LRAQVDRDLYSKEMTETLENHPNLTLIQG-EVTDLIP-ENGKVKGVVTED-- 135 (391)
T ss_pred -HHHHHHHCCCCC--------CCCCC--CHHHHHHHHHHHHHHHHHHCCCCCEEEEC-CCEEEEC-CCCEEEEEEECC--
T ss_conf -545653044678--------76668--58998799999999999975999399954-6400302-699599999379--
Q ss_pred CCCCCCCCCCCCCEEEEEEEEEEEECCC
Q ss_conf 4434665787563026774257860664
Q gi|254781024|r 165 KNYDGTQGKHYIAPMLLLSKYMLVGEGA 192 (554)
Q Consensus 165 ~~k~~~~~~~~~~g~~i~Ak~vI~AdG~ 192 (554)
+..+.++.||.|.|.
T Consensus 136 -------------g~~i~a~~vIltTGT 150 (391)
T pfam01134 136 -------------GEEYKAKAVVIATGT 150 (391)
T ss_pred -------------CCEEECCEEEEECCC
T ss_conf -------------978514459993156
No 163
>PRK06116 glutathione reductase; Validated
Probab=98.99 E-value=1.5e-09 Score=85.23 Aligned_cols=35 Identities=31% Similarity=0.632 Sum_probs=32.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 6477999897689999999998089973999978677
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
+||||||||||||++||++++++| ++|+|+|++..
T Consensus 4 ~YDvvVIG~GpaG~~aA~~aa~~G--~kV~liE~~~~ 38 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYG--AKVALIEAKEL 38 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCC
T ss_conf 488899998889999999999687--96999937997
No 164
>KOG0042 consensus
Probab=98.98 E-value=2.9e-08 Score=76.28 Aligned_cols=387 Identities=15% Similarity=0.167 Sum_probs=190.8
Q ss_pred CCCHHCC--------CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC------CCCCCCCEEC----------
Q ss_conf 4200103--------647799989768999999999808997399997867789------8640274033----------
Q gi|254781024|r 7 LHNKDVF--------EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG------AHILSGAIID---------- 62 (554)
Q Consensus 7 ~~~re~m--------eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG------~~i~sG~vl~---------- 62 (554)
++.||.+ +|||+|||||-.|+-+|.-.+-.| |+|+|+|++.|-- .|.+-|+|=+
T Consensus 52 ~PsRe~~l~~l~~~~~fDVLIIGGGAtGaGcALDA~TRG--LktaLVE~~DF~SGTSSkSTKLiHGGVRYLekAi~~lD~ 129 (680)
T KOG0042 52 LPSREDLLEALKSTHEFDVLIIGGGATGAGCALDAATRG--LKTALVEAGDFASGTSSKSTKLIHGGVRYLEKAISNLDY 129 (680)
T ss_pred CCCHHHHHHHHHCCCCCCEEEECCCCCCCCEEEHHHCCC--CEEEEEECCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCH
T ss_conf 998899999863477553799888866754121201145--214777426645776554025440459999999986489
Q ss_pred ------HHHHHHH------CCCHHHHCCCCCCCEEEE----------EEE-EEECCCCCEECCCCC-------CCCCCCC
Q ss_conf ------3678886------787264148854322436----------699-997799767736543-------5654467
Q gi|254781024|r 63 ------PIGIDSL------LPRWREDKGHPFHTVVKR----------DLY-WFLNAQRSIQIPHFC-------LPDFMDN 112 (554)
Q Consensus 63 ------p~aL~eL------~Pd~~e~~g~pl~~~v~~----------d~~-~~l~~~~~~~~p~~~-------~p~~~~~ 112 (554)
-.+|+|- =|..- ...|+-.||-+ -++ -|+...+.+...++. .-+..++
T Consensus 130 ~qyrlV~eaL~ER~~lle~APhLs--~~lPImlPvy~wwQvpYyw~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fPmL~~ 207 (680)
T KOG0042 130 EQYRLVKEALNERANLLEIAPHLS--QPLPIMLPVYKWWQVPYYWVGLKIYDLVAGSKNLKSSYFLSKKEALEIFPMLRK 207 (680)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCC--CCCCEEEEHHHHHHHHHEEECCEEEEEECCCCCCCCCEEECHHHHHHHCCCCCC
T ss_conf 999999999998887764173105--786545443664400230231034564125543551034238889986753353
Q ss_pred ---CCCEE-----EEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf ---88268-----8888989999999987495330682243477627762014541243244346657875630267742
Q gi|254781024|r 113 ---KEHYI-----VSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSK 184 (554)
Q Consensus 113 ---~g~yi-----v~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak 184 (554)
.|+.+ -+-.+++--++-.|...|+.+..-..|..++.+++++++|++..|.-.. ...+++||
T Consensus 208 ~~L~Ga~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG----------~e~~I~Ak 277 (680)
T KOG0042 208 DNLKGAMVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITG----------KEYEIRAK 277 (680)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECC----------CEEEEEEE
T ss_conf 57405799951777237789999999986004554179898775278985510588874047----------37899878
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCC--EEEEECCCCEEE
Q ss_conf 578606644325542112248998888989988988887516566788808995043476876641--257664798059
Q gi|254781024|r 185 YMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMNTSGG--GFVYHFDDNLVS 262 (554)
Q Consensus 185 ~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~~~gg--gwiy~~~d~~~~ 262 (554)
+||-|.|..+-=-|++... ..++-+.|. .|+ .-+-++.+.|.. +|.- +..+.-| .|..|-... .-
T Consensus 278 ~VVNATGpfsDsIr~Mdd~-~~~~i~~pS---sGv---HIVlP~yY~P~~----mGll-dP~TsDgRViFflPWqg~-TI 344 (680)
T KOG0042 278 VVVNATGPFSDSIRKMDDE-DAKPICVPS---SGV---HIVLPGYYCPEN----MGLL-DPKTSDGRVIFFLPWQGK-TI 344 (680)
T ss_pred EEEECCCCCCHHHHHHCCC-CCCCEECCC---CCE---EEECCCCCCCCC----CCCC-CCCCCCCCEEEEECCCCC-EE
T ss_conf 9995887862788862225-468611567---730---697246558765----6544-678889708998425783-66
Q ss_pred EEEEECCCCCCCCCCH----------HHHHHHHHHCCCHHHHHCCCCEECC--CCEECCCCC-C-CCCCCCCCCCEEEEC
Q ss_conf 9998326665668898----------8999998608004565038826303--513400542-1-248742308879961
Q gi|254781024|r 263 IGFVLHLDYRNPWISA----------YEELQRFKTHPDIRIIFTEGERLEY--GARVISEGG-W-QSVPKLSFPGGSLIG 328 (554)
Q Consensus 263 iG~v~~ld~~~~~~~~----------~~~lq~fk~hp~i~~~l~gg~~~~y--ga~~ip~gg-~-~s~pk~~~~g~lLvG 328 (554)
+|. ......+..+| .+++|++..-+. .+.-+..++. |-|.+.... . ..-..++.+.++.+|
T Consensus 345 aGT--TD~pt~v~~~P~PtE~dIqfIL~ev~~yl~~~~---~VrR~DVlsaWsGiRPLv~DP~~~~~t~sl~R~H~v~~~ 419 (680)
T KOG0042 345 AGT--TDIPTSVTHSPTPTEDDIQFILKEVQHYLSFDV---EVRREDVLSAWSGIRPLVRDPKKVKDTQSLVRNHFVFVS 419 (680)
T ss_pred ECC--CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC---CCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCEEEEC
T ss_conf 305--789988878999977889999999998607986---500453677862776656698754220002430168706
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 232331366435226899999999999999874588653036-------------7899864204667888742256688
Q gi|254781024|r 329 CAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPI-------------EIEDSWRQTQIGKDLWIIRNIKPLL 395 (554)
Q Consensus 329 DAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~-------------~Ye~~~~~s~~~~el~~~rn~~~~~ 395 (554)
+. |++.-.-||=+.+ =.||-|+|-+++..++...... .|....-. -+-+|.--.+++++-+
T Consensus 420 ~~-gLiTIaGGKWTTy----R~MAEeTVd~aI~~~~lk~~~~~cvT~~l~l~Ga~~wt~~~~~-~LvQdyg~e~~vA~hL 493 (680)
T KOG0042 420 PS-GLITIAGGKWTTY----RHMAEETVDAAIKAGDLKPARKPCVTKKLKLEGAEGWTPNMYI-RLVQDYGMESDVAQHL 493 (680)
T ss_pred CC-CEEEEECCCCHHH----HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHH-HHHHHHCCCHHHHHHH
T ss_conf 99-7089726841547----9888999999998278777787652431488446787678899-9999818728999999
Q ss_pred H-HHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCC
Q ss_conf 7-6160468999899998854226566665677888965400
Q gi|254781024|r 396 S-RFGVFIGLSLGLMDIWIQKILGFSFLGTLKHHKMDSCSLE 436 (554)
Q Consensus 396 ~-~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 436 (554)
+ -||.. ++-...+. +..+.+.|-+.++-++++-.++
T Consensus 494 s~tYG~r---A~~Va~~~--k~tgkk~Pivg~rl~~~fpyle 530 (680)
T KOG0042 494 SQTYGDR---AFRVAKMA--KSTGKKWPIVGKRLHPEFPYLE 530 (680)
T ss_pred HHHHCCH---HHHHHHHH--HHCCCCCCCCCCCCCCCCCCHH
T ss_conf 8764412---89999999--8618747631210467887349
No 165
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.98 E-value=1.4e-08 Score=78.53 Aligned_cols=137 Identities=23% Similarity=0.331 Sum_probs=74.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEEE
Q ss_conf 64779998976899999999980899739999786778986402740333678886787264148854322436699997
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFL 93 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~l 93 (554)
.+||+||||||||+++|++|+++|.+ +++++||...+|.- |+... .| .+..-
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~-~~~i~Ek~~~~Gg~------------------W~~~r-y~--------~l~~~ 59 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVP-DFVIFEKRDDVGGT------------------WRYNR-YP--------GLRLD 59 (443)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCC-CEEEEEECCCCCCC------------------CCCCC-CC--------EEEEC
T ss_conf 55489989878899999999975998-67999705766786------------------55566-87--------16767
Q ss_pred CCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 79976773654356544678826888889899999999874953306822434776277620145412432443466578
Q gi|254781024|r 94 NAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGK 173 (554)
Q Consensus 94 ~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~ 173 (554)
++.....+|....+ .-.....+...+..+-.++-+.....- +...+.|..+.+++++..=.|.+.+.+.
T Consensus 60 ~p~~~~~~~~~p~~-~~~~~~~~~~~~~y~~~~~~~y~~~~~--i~~~~~v~~~~~~~~~~~w~V~~~~~~~-------- 128 (443)
T COG2072 60 SPKWLLGFPFLPFR-WDEAFAPFAEIKDYIKDYLEKYGLRFQ--IRFNTRVEVADWDEDTKRWTVTTSDGGT-------- 128 (443)
T ss_pred CCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHCCEEE--EECCCCEEEEEEECCCCEEEEEECCCCC--------
T ss_conf 97401158888877-655677764389999999998356045--0214525688630588706999648875--------
Q ss_pred CCCCEEEEEEEEEEEECCCCC
Q ss_conf 756302677425786066443
Q gi|254781024|r 174 HYIAPMLLLSKYMLVGEGACG 194 (554)
Q Consensus 174 ~~~~g~~i~Ak~vI~AdG~~s 194 (554)
.. +.+++||.|.|..+
T Consensus 129 ----~~-~~a~~vV~ATG~~~ 144 (443)
T COG2072 129 ----GE-LTADFVVVATGHLS 144 (443)
T ss_pred ----CE-EECCEEEECCCCCC
T ss_conf ----22-51267998305789
No 166
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.96 E-value=1e-08 Score=79.54 Aligned_cols=38 Identities=39% Similarity=0.562 Sum_probs=34.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 4779998976899999999980899739999786778986
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAH 54 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~ 54 (554)
--|+||||||||||||++|++.| ++|.|+||.+.+|.-
T Consensus 194 KkVAIIGaGPAGLsaAy~L~~~G--h~VTVfE~~~~~GGm 231 (652)
T PRK12814 194 KKVAIIGAGPAGLTAAYYLLRKG--HDVTIFDANEQAGGM 231 (652)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCE
T ss_conf 97999683789999999999779--906998158888986
No 167
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form; InterPro: IPR006281 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the monomeric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=98.96 E-value=6.4e-08 Score=73.95 Aligned_cols=303 Identities=20% Similarity=0.197 Sum_probs=153.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC--CCEECHHHHHHHCCC--------------HHHH--
Q ss_conf 4779998976899999999980899739999786778986402--740333678886787--------------2641--
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILS--GAIIDPIGIDSLLPR--------------WRED-- 76 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~s--G~vl~p~aL~eL~Pd--------------~~e~-- 76 (554)
|||||||||--|++||++|||.++ +|||||.=.+|= +.=| |. .|.++.-.|+ |-+.
T Consensus 1 fDvIVvGAG~~G~~aaY~LAK~~~--~~LLleqFd~pH-~rGSsHG~---sRiIR~aY~Edr~Y~~m~~e~~~lWa~le~ 74 (401)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKRGK--KTLLLEQFDLPH-SRGSSHGQ---SRIIRKAYPEDRFYTSMVSECYQLWAQLEK 74 (401)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC--EEEEEECCCCCC-CCCCCCCC---CCCEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 957998176135689999875386--178875156776-78887877---100010267863578899999999999862
Q ss_pred -CCCCCC--------------------------CEEEEEEEE--EECC--CCCEECCCCCCCCCCCCCCCEEEEHHHHHH
Q ss_conf -488543--------------------------224366999--9779--976773654356544678826888889899
Q gi|254781024|r 77 -KGHPFH--------------------------TVVKRDLYW--FLNA--QRSIQIPHFCLPDFMDNKEHYIVSLGQVCR 125 (554)
Q Consensus 77 -~g~pl~--------------------------~~v~~d~~~--~l~~--~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~ 125 (554)
.+.-+. ..+.++.+. -|++ .+.+++|...+- .+.+.++ |+--.+--+
T Consensus 75 E~g~k~h~qT~~l~~G~k~~s~~l~~~~a~~~~~~l~H~~~~s~~l~~rf~G~i~~p~n~~g-~~~~~gG-vl~~~ka~~ 152 (401)
T TIGR01377 75 EAGTKLHRQTGLLLLGPKENSQSLKTIVATLSRHGLEHELLSSKQLKQRFPGNIRVPRNEVG-LLDELGG-VLYAEKALR 152 (401)
T ss_pred CCCCEEECCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCHHHHHCCCCCEECCCCEEE-EEECCCC-EECHHHHHH
T ss_conf 14726431345156315778605899999886255230331641232004762340686078-8746887-462278999
Q ss_pred HHHHHHHHCCCEECCCCEEEEEEEC--CCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCC--HHHHHHH
Q ss_conf 9999998749533068224347762--77620145412432443466578756302677425786066443--2554211
Q gi|254781024|r 126 WLKNKAEALGVEIYCGFTATEIYYG--KKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACG--SLTRQLI 201 (554)
Q Consensus 126 ~L~~~Ae~~Gvei~~g~~v~~i~~~--e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s--~lak~l~ 201 (554)
.+.+.|+..|+.|+.+++|.++-.+ ..+.+|.++|... .+.|+-+|..-|+.- .|-+.|.
T Consensus 153 a~q~l~~~~Ga~v~d~~kV~~i~~~GesGe~~vt~kt~~~----------------sy~a~~lvvtaGaW~s~kLl~~l~ 216 (401)
T TIGR01377 153 ALQELAEAHGAIVRDGTKVVEIKPDGESGELLVTVKTTKD----------------SYQAKKLVVTAGAWTSNKLLKKLG 216 (401)
T ss_pred HHHHHHHHCCCEEECCCEEEEEEECCCCCCCEEEEEEECC----------------EEECCEEEEECCCCHHHHHCCCCC
T ss_conf 9999998749687348603665426767895489997277----------------032135789538861234313014
Q ss_pred -HHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEE--EEE--ECCCCCCCCCCCEEEEEC-CCCEEEEE----EEECCCC
Q ss_conf -2248998888989988988887516566788808--995--043476876641257664-79805999----9832666
Q gi|254781024|r 202 -ERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLA--LHS--IGWPLDMNTSGGGFVYHF-DDNLVSIG----FVLHLDY 271 (554)
Q Consensus 202 -~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~--~h~--~g~~~~~~~~gggwiy~~-~d~~~~iG----~v~~ld~ 271 (554)
-.++|.+-.. -| .+|+....... +.. .++ +-+-...+.+.|+-+-.. ..++..+- --++.|.
T Consensus 217 Gie~Plqplr~------~V-cywr~~~~~~~-~~~id~~fP~f~~~~~~~H~iYgG~Ps~eypGL~k~~~h~G~~~DPd~ 288 (401)
T TIGR01377 217 GIELPLQPLRI------NV-CYWREKEPKSE-GVSIDQAFPCFLVLGLNPHHIYGGLPSLEYPGLMKVAYHHGQQIDPDE 288 (401)
T ss_pred CEECCCCCCEE------EE-EEEEEECCCCC-CCEECCCCCEEEEECCCCCEEECCCCCCCCCCCEEEEEECCCCCCCCC
T ss_conf 23267642101------36-47874227643-622235577356535888447415378889840689870687358654
Q ss_pred CCCC-----CCHHHHHHHHHHCCCHHHHHCCCC-EECCCCEE------CCCCCC--CCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 5668-----898899999860800456503882-63035134------005421--248742308879961232331366
Q gi|254781024|r 272 RNPW-----ISAYEELQRFKTHPDIRIIFTEGE-RLEYGARV------ISEGGW--QSVPKLSFPGGSLIGCAAGFVNLL 337 (554)
Q Consensus 272 ~~~~-----~~~~~~lq~fk~hp~i~~~l~gg~-~~~yga~~------ip~gg~--~s~pk~~~~g~lLvGDAAG~vnP~ 337 (554)
++.. ..-.+.|.+| |++.|.|-+ .-+-.... -|.-.| .-.|--+.+++++ +|||
T Consensus 289 r~~~~g~~~~~d~~~L~~f-----~~~~~pg~~ds~ep~~~~~CMYt~TPDE~FviD~hpG~~~~nvvi---gaGF---- 356 (401)
T TIGR01377 289 RDCEFGFADIEDVQILKKF-----VRDHLPGLKDSEEPKATEVCMYTKTPDEHFVIDLHPGKYYDNVVI---GAGF---- 356 (401)
T ss_pred CCCCCCCCCHHHHHHHHHH-----HHHHCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCCCCCCEEE---ECCC----
T ss_conf 6788885678899999999-----998578865665640100046788666044651478820372379---6356----
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 435226899999999999999874
Q gi|254781024|r 338 RIKGSHNAIISGMLAAEKIVERLS 361 (554)
Q Consensus 338 ~g~GI~~Am~SG~lAAEai~eal~ 361 (554)
+|-|=-.|=.=|++.||-+.+.-.
T Consensus 357 SGHGFk~apvVG~iLa~lam~~~~ 380 (401)
T TIGR01377 357 SGHGFKLAPVVGKILAELAMKLKP 380 (401)
T ss_pred CCCCCEECHHHHHHHHHHHCCCCC
T ss_conf 775414054788899987512468
No 168
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.96 E-value=6.5e-09 Score=80.82 Aligned_cols=178 Identities=20% Similarity=0.208 Sum_probs=91.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC--------CEEC---------------------HHHH
Q ss_conf 7799989768999999999808997399997867789864027--------4033---------------------3678
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSG--------AIID---------------------PIGI 66 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG--------~vl~---------------------p~aL 66 (554)
-|.|||+||||||||..|++.| ++|.|+|+-..+|.=..-| .+++ ...+
T Consensus 434 KVAVIGsGPAGLs~A~~Lar~G--~~VTVfEal~~~GGvL~YGIPeFRLPK~IV~~EI~~l~~lGVef~~n~~VGkditl 511 (993)
T PRK12775 434 KVAIVGSGPAGLAAAADLTRYG--VETTVYEALHVLGGVLQYGIPSFRLPRDIIDREIQRLKDIGVKFETNKVVGKTFTI 511 (993)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCEEEECCCEECCCCCH
T ss_conf 0899783788999999999779--96489716888997268437776788899999999998789499838886560789
Q ss_pred HHHCCC--HHHH---CCC--CCCCEEEEE-------EEEEECCC---CCEECCCCCCCCCCCC-----------------
Q ss_conf 886787--2641---488--543224366-------99997799---7677365435654467-----------------
Q gi|254781024|r 67 DSLLPR--WRED---KGH--PFHTVVKRD-------LYWFLNAQ---RSIQIPHFCLPDFMDN----------------- 112 (554)
Q Consensus 67 ~eL~Pd--~~e~---~g~--pl~~~v~~d-------~~~~l~~~---~~~~~p~~~~p~~~~~----------------- 112 (554)
++|+-+ |... .|+ |..-.+..+ -..||+.- ++..+|....|....+
T Consensus 512 ~eL~~e~gyDAVFIg~GA~~~~~lgIpGE~l~GV~sA~eFLtrvNLm~~~~~p~~dtPv~~GK~VvVIGGGNTAMDaART 591 (993)
T PRK12775 512 PQLMNDRGFDAVFVAAGAGAPTFLGIPGEFAGRVYSANEFLTRINLMGGDKFPYLDTPVSVGKSVVVIGAGNTAMDCLRV 591 (993)
T ss_pred HHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHH
T ss_conf 99953459898999558786731898988887817779999997633577677567864579969998994369998899
Q ss_pred ---CCC---EEEEHHHHH-----HHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCC---CCCCCCCCCC-CC
Q ss_conf ---882---688888989-----99999998749533068224347762776201454124324---4346657875-63
Q gi|254781024|r 113 ---KEH---YIVSLGQVC-----RWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGK---NYDGTQGKHY-IA 177 (554)
Q Consensus 113 ---~g~---yiv~r~~fd-----~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~---~k~~~~~~~~-~~ 177 (554)
.|+ ++|-|..-. ..=.+.|++.|+++.+-+.-.+++.+++|+|.++....+-. |..|..++-- ..
T Consensus 592 A~RLGAe~VtivYRRte~EMPA~~eEV~~A~EEGV~F~fL~~Pveiigde~G~V~gv~~~kMeLGEPD~SGRRrPVP~g~ 671 (993)
T PRK12775 592 ARRLGAATVRCVYRRSEAEAPARIEEIRHAKEEGVDFFFLHSPVEILVTEEGSVRAVRLQKMELGEPDERGRRKPMPLDE 671 (993)
T ss_pred HHHCCCCEEEEEEECCHHHCCCCHHHHHHHHHCCCEEEECCCCCEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 99769986799996885638988999987986593999626971678658863989999981667989888947867885
Q ss_pred EEEEEEEEEEEECCCCCH
Q ss_conf 026774257860664432
Q gi|254781024|r 178 PMLLLSKYMLVGEGACGS 195 (554)
Q Consensus 178 g~~i~Ak~vI~AdG~~s~ 195 (554)
-.++.++.||.|=|-...
T Consensus 672 ~~~le~D~VI~AIGq~pn 689 (993)
T PRK12775 672 FIELECDTVIYALGTKPN 689 (993)
T ss_pred EEEEECCEEEECCCCCCC
T ss_conf 488887999995779998
No 169
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=98.96 E-value=4.1e-08 Score=75.26 Aligned_cols=143 Identities=17% Similarity=0.238 Sum_probs=84.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEEECCC
Q ss_conf 79998976899999999980899739999786778986402740333678886787264148854322436699997799
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFLNAQ 96 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~l~~~ 96 (554)
|+||||||||++||..|.+.| +.+.++||.+.+|. + +. .+|- | +. + ...+ -+.+..-+..
T Consensus 4 VAIIGAG~SGL~a~K~lle~G--~~~~~FE~~~~iGG------~-W~--~~~~-~---~~-~---~~~~-y~sl~~Ntsk 63 (532)
T pfam00743 4 VAVIGAGVSGLSSIKCCLEEG--LEPTCFERSDDIGG------L-WR--FTEH-V---EE-G---RASI-YKSVVTNSSK 63 (532)
T ss_pred EEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCC------C-CC--CCCC-C---CC-C---CCCC-CCCEEEECCC
T ss_conf 999897299999999998779--98299977999735------0-66--8888-7---88-8---6764-8970685890
Q ss_pred CCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCC--EECCCCEEEEEEECCCCCEE---EEEECCCCCCCCCCC
Q ss_conf 7677365435654467882688888989999999987495--33068224347762776201---454124324434665
Q gi|254781024|r 97 RSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGV--EIYCGFTATEIYYGKKGEAL---GILTGEKGKNYDGTQ 171 (554)
Q Consensus 97 ~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gv--ei~~g~~v~~i~~~e~g~vv---gv~t~~~G~~k~~~~ 171 (554)
....++.+..|...+ .| .+..++-++|...|+..|. .|..+++|..+....+.... .|.+...|.
T Consensus 64 ~~~~fSDfP~P~~~p---~f-~~~~~v~~YL~~YA~hF~L~~~Irf~t~V~~V~~~~d~~~~g~W~V~~~~~g~------ 133 (532)
T pfam00743 64 EMSCFSDFPFPEDYP---NF-MHNSKFLEYLRMFAKHFDLLKYIQFKTTVCSVTKRPDFSTSGQWEVVTEHEGK------ 133 (532)
T ss_pred HHHCCCCCCCCCCCC---CC-CCHHHHHHHHHHHHHHCCCCCCEECCCEEEEEEECCCCCCCCEEEEEEEECCE------
T ss_conf 051389998998788---99-89899999999999980996737657789999976676668618999985890------
Q ss_pred CCCCCCEEEEEEEEEEEECCCCCH
Q ss_conf 787563026774257860664432
Q gi|254781024|r 172 GKHYIAPMLLLSKYMLVGEGACGS 195 (554)
Q Consensus 172 ~~~~~~g~~i~Ak~vI~AdG~~s~ 195 (554)
..+-..+.||.|.|..+.
T Consensus 134 ------~~~~~fD~ViVctG~~~~ 151 (532)
T pfam00743 134 ------QESAVFDAVMVCTGHHTN 151 (532)
T ss_pred ------EEEEEEEEEEEECCCCCC
T ss_conf ------889997799994667786
No 170
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=98.93 E-value=8.5e-09 Score=80.02 Aligned_cols=35 Identities=43% Similarity=0.746 Sum_probs=33.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 7999897689999999998089973999978677898
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGA 53 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~ 53 (554)
|+|||||||||+||=.|+|+| .+|.|+||.++||.
T Consensus 146 VAviGAGPAGLaCAD~L~RaG--V~v~VfDRhP~iGG 180 (480)
T TIGR01318 146 VAVIGAGPAGLACADILARAG--VQVVVFDRHPEIGG 180 (480)
T ss_pred EEEECCCCCHHHHHHHHHHCC--CEEEEEECCCCCCC
T ss_conf 899778860257999875178--55999747703076
No 171
>pfam01593 Amino_oxidase Flavin containing amine oxidoreductase. This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.
Probab=98.92 E-value=6.2e-07 Score=67.07 Aligned_cols=59 Identities=14% Similarity=0.087 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCH
Q ss_conf 8898999999998749533068224347762776201454124324434665787563026774257860664432
Q gi|254781024|r 120 LGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGS 195 (554)
Q Consensus 120 r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~ 195 (554)
.+.+...+...++..|++|..++.|+.|..+.++ +.|.+.+ |.+++|++||.|--....
T Consensus 203 ~g~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~--v~v~~~~---------------G~~~~ad~VI~a~p~~~l 261 (444)
T pfam01593 203 LGGLPQLIAAALGLLGGRVRLNTRVRSITKEGDG--VTVTTVD---------------GEVIEADAVIVTVPLGVL 261 (444)
T ss_pred CCCHHHHHHHHHHCCCCEEEECCEEEEEEEECCE--EEEEECC---------------CCEEECCEEEECCCHHHH
T ss_conf 8718999999974159869958977899996996--9999889---------------976644868985798887
No 172
>PRK13748 putative mercuric reductase; Provisional
Probab=98.91 E-value=3.7e-09 Score=82.54 Aligned_cols=35 Identities=29% Similarity=0.504 Sum_probs=32.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 6477999897689999999998089973999978677
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
+|||+|||+||||.+||++++++| .+|+|+||+..
T Consensus 98 ~yDliVIG~GpaG~~AA~~Aa~~G--~kValVE~~~l 132 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQG--ARVTLIERGTI 132 (561)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCC
T ss_conf 876899895889999999999789--97999947996
No 173
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.88 E-value=7.7e-09 Score=80.35 Aligned_cols=147 Identities=22% Similarity=0.344 Sum_probs=76.8
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHH---HCCCHHHHCCCCCCCEEEEE
Q ss_conf 036477999897689999999998089973999978677898640274033367888---67872641488543224366
Q gi|254781024|r 12 VFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDS---LLPRWREDKGHPFHTVVKRD 88 (554)
Q Consensus 12 ~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~e---L~Pd~~e~~g~pl~~~v~~d 88 (554)
.|+||||||||||||.+||++++++|+ +|+++||+...|.--+==+++..++|-+ ++-.+++.. +
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~--kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~--~-------- 69 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGL--KVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAA--K-------- 69 (454)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC--CEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHC--C--------
T ss_conf 851548998977779999999996799--7799930698676557467314499999999999986414--2--------
Q ss_pred EEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCC
Q ss_conf 99997799767736543565446788268888898999999998749533068224347762776201454124324434
Q gi|254781024|r 89 LYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYD 168 (554)
Q Consensus 89 ~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~ 168 (554)
.+-.-.+...+.++. .+..... +++ ....-+....+..|++++.|..- +.+ ...+.|...
T Consensus 70 ~~Gi~~~~~~~d~~~-----~~~~k~~-v~~--~~~~~~~~l~~~~~V~vi~G~a~----f~~-~~~v~V~~~------- 129 (454)
T COG1249 70 EYGISAEVPKIDFEK-----LLARKDK-VVR--LLTGGVEGLLKKNGVDVIRGEAR----FVD-PHTVEVTGE------- 129 (454)
T ss_pred CCCEECCCCCCCHHH-----HHHHHHH-HHH--HHHHHHHHHHHHCCCEEEEEEEE----ECC-CCEEEEECC-------
T ss_conf 365205778538999-----9999999-999--87677999997489889998999----888-998999068-------
Q ss_pred CCCCCCCCCEEEEEEEEEEEECCCCCHHHH
Q ss_conf 665787563026774257860664432554
Q gi|254781024|r 169 GTQGKHYIAPMLLLSKYMLVGEGACGSLTR 198 (554)
Q Consensus 169 ~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak 198 (554)
....++|+.+|.|.|.+...-.
T Consensus 130 --------~~~~~~a~~iiIATGS~p~~~~ 151 (454)
T COG1249 130 --------DKETITADNIIIATGSRPRIPP 151 (454)
T ss_pred --------CCEEEEECEEEEECCCCCCCCC
T ss_conf --------7549982789990699877899
No 174
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.85 E-value=4.8e-09 Score=81.77 Aligned_cols=35 Identities=46% Similarity=0.793 Sum_probs=32.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 6477999897689999999998089973999978677
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
+||||||||||||++||++|+++| ++|+|+||+..
T Consensus 3 ~YDvvVIG~GpaG~~aA~~aa~~G--~~V~liE~~~~ 37 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLG--KKVALIEKGPL 37 (460)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCC
T ss_conf 169899997789999999999697--90999958998
No 175
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=98.85 E-value=1.7e-08 Score=77.86 Aligned_cols=36 Identities=39% Similarity=0.684 Sum_probs=33.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 47799989768999999999808997399997867789
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG 52 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG 52 (554)
.-|.|||.|||||+||-.|.|+|+ +|.|+||..-+|
T Consensus 152 kkVAVVGSGPAGLAaA~qLnrAGH--~VTVfER~DR~G 187 (517)
T TIGR01317 152 KKVAVVGSGPAGLAAADQLNRAGH--TVTVFEREDRVG 187 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC--CEEEEECCCCCC
T ss_conf 668997567579999999853588--389974367888
No 176
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.80 E-value=8.6e-09 Score=79.99 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCC
Q ss_conf 8898999999998749533068224347762776201454124324434665787563026774257860664
Q gi|254781024|r 120 LGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGA 192 (554)
Q Consensus 120 r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~ 192 (554)
.+.+-+-|++.|++.|++|++++.|++|+. ++|+.+++.+.+. ..+.++.||.+-..
T Consensus 223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g---------------~~~~ad~vv~~~~~ 279 (487)
T COG1233 223 MGALVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDG---------------ENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEE-ECCCEEEEEECCC---------------CEEECCEEEECCCH
T ss_conf 899999999999974939967871359997-1890589980676---------------07514689986887
No 177
>KOG2820 consensus
Probab=98.79 E-value=1.6e-07 Score=71.17 Aligned_cols=161 Identities=24% Similarity=0.288 Sum_probs=97.3
Q ss_pred HCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC----EECHHH--------HHHHCCCHHHHCC
Q ss_conf 1036477999897689999999998089973999978677898640274----033367--------8886787264148
Q gi|254781024|r 11 DVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGA----IIDPIG--------IDSLLPRWREDKG 78 (554)
Q Consensus 11 e~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~----vl~p~a--------L~eL~Pd~~e~~g 78 (554)
.+|.+||||||||-=||++|+.||+.| .++++||.-..|- +.-|-. ++.+.- .-|-.-.|++
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g--~killLeqf~~ph-~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~--- 77 (399)
T KOG2820 4 MVKSRDVIIVGAGVFGLSTAYELAKRG--DKILLLEQFPLPH-SRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRN--- 77 (399)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCC--CEEEEEECCCCCC-CCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHH---
T ss_conf 246516999866400008899998657--7079873367776-5676567440212023368999999999999874---
Q ss_pred CCCCCEEE--EEEEEEE-CC--------------------------CCCEECC-CCCCCCCC----CCCCCEEEEHHHHH
Q ss_conf 85432243--6699997-79--------------------------9767736-54356544----67882688888989
Q gi|254781024|r 79 HPFHTVVK--RDLYWFL-NA--------------------------QRSIQIP-HFCLPDFM----DNKEHYIVSLGQVC 124 (554)
Q Consensus 79 ~pl~~~v~--~d~~~~l-~~--------------------------~~~~~~p-~~~~p~~~----~~~g~yiv~r~~fd 124 (554)
.|.+..+. .....+. .. .-+-.+| +..+|+.+ .+.++++ .-.+--
T Consensus 78 ~~~~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi-~a~ksl 156 (399)
T KOG2820 78 LPEESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVI-NAAKSL 156 (399)
T ss_pred CHHHHCEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCEE-EHHHHH
T ss_conf 8464333641562036507678777899999876500355530279899758777657864122034556574-188999
Q ss_pred HHHHHHHHHCCCEECCCCEEEEEE-ECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCC
Q ss_conf 999999987495330682243477-627762014541243244346657875630267742578606644
Q gi|254781024|r 125 RWLKNKAEALGVEIYCGFTATEIY-YGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGAC 193 (554)
Q Consensus 125 ~~L~~~Ae~~Gvei~~g~~v~~i~-~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~ 193 (554)
+.|...|..+|+.++.|..|+.+- .+|.+..+.|+|.+ +..+.|+-+|+|-|+.
T Consensus 157 k~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~---------------gs~Y~akkiI~t~GaW 211 (399)
T KOG2820 157 KALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTD---------------GSIYHAKKIIFTVGAW 211 (399)
T ss_pred HHHHHHHHHCCEEEECCCCEEEEEECCCCCCEEEEEECC---------------CCEEECCEEEEEECHH
T ss_conf 999999987085996275045675046778525899666---------------8743312489983087
No 178
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=98.79 E-value=7.3e-09 Score=80.47 Aligned_cols=146 Identities=21% Similarity=0.274 Sum_probs=73.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHH---HHHCCCHHHHCCCCCCCEEEEEEE
Q ss_conf 64779998976899999999980899739999786778986402740333678---886787264148854322436699
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGI---DSLLPRWREDKGHPFHTVVKRDLY 90 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL---~eL~Pd~~e~~g~pl~~~v~~d~~ 90 (554)
+||||||||||+|=.|||++||+| +||+|+||. +.|.==|==+++.+++| -|++-+.++. .+.+
T Consensus 1 ~yD~vViGgGPGGYVAAIrAAQlG--~KValvEK~-~lGGtCLN~GCIPtKaLL~~ae~~~~~~h~----------a~~~ 67 (481)
T TIGR01350 1 EYDVVVIGGGPGGYVAAIRAAQLG--LKVALVEKE-KLGGTCLNVGCIPTKALLHSAEVYDEIKHK----------AKDL 67 (481)
T ss_pred CCCEEEECCCCCHHHHHHHHHHCC--CEEEEEEEC-CCCCEEECCCCCCCHHHHHHHHHHHHHHHH----------HHHC
T ss_conf 951899877877279999998649--808999803-568748727767547887766789999988----------9867
Q ss_pred EEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCC
Q ss_conf 99779976773654356544678826888889899999999874953306822434776277620145412432443466
Q gi|254781024|r 91 WFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGT 170 (554)
Q Consensus 91 ~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~ 170 (554)
-+..++ .+++.+. .|..+-+-+|+. +-.=..-.-...+|+++.|..-- .+...+.|....
T Consensus 68 Gi~~~~-~v~~d~~----~~~~rK~~VV~~--L~~Gv~~LlkknKv~v~~G~a~~-----~~~~~v~V~~~~-------- 127 (481)
T TIGR01350 68 GIEVEN-NVSVDWE----KMQERKNKVVKK--LVGGVKGLLKKNKVTVIKGEAKF-----LDPNTVSVTGEN-------- 127 (481)
T ss_pred CEEECC-EEEECHH----HHHHHHHHHHHH--HHHHHHHHHHHCCEEEEEEEEEE-----ECCCEEEEECCC--------
T ss_conf 803367-1267589----999998898754--24678988630680599999999-----858589983565--------
Q ss_pred CCCCCCCEEEEEEEEEEEECCCCCHH
Q ss_conf 57875630267742578606644325
Q gi|254781024|r 171 QGKHYIAPMLLLSKYMLVGEGACGSL 196 (554)
Q Consensus 171 ~~~~~~~g~~i~Ak~vI~AdG~~s~l 196 (554)
+++-..++++-+|.|.|.+-+-
T Consensus 128 ----~~~~~~~~~k~~iiATGS~P~~ 149 (481)
T TIGR01350 128 ----GEEEETLEAKNIIIATGSRPRE 149 (481)
T ss_pred ----CCEEEEEEEEEEEEECCCCCCC
T ss_conf ----5311478740379933860343
No 179
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate . 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=98.79 E-value=4.4e-08 Score=75.09 Aligned_cols=183 Identities=20% Similarity=0.253 Sum_probs=91.8
Q ss_pred HCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC--------CEE---------------------
Q ss_conf 103647799989768999999999808997399997867789864027--------403---------------------
Q gi|254781024|r 11 DVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSG--------AII--------------------- 61 (554)
Q Consensus 11 e~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG--------~vl--------------------- 61 (554)
.+-.+-|.||||||||||+|.-|||.| ++|.|+|.=.-||.=.--| .++
T Consensus 139 p~t~~kVAViGaGPAGL~cA~elAk~G--h~VtvfEALhKPGGV~~YGIPefRLpKei~~~E~k~LkklGv~fr~~~lvG 216 (462)
T TIGR01316 139 PSTKKKVAVIGAGPAGLACASELAKKG--HEVTVFEALHKPGGVLAYGIPEFRLPKEIVETEVKKLKKLGVKFRTDYLVG 216 (462)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHCC--CEEEEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCEEC
T ss_conf 888877999846821468899997479--869999714899856753688854875788988887632663799443750
Q ss_pred CHHHHHHHCCCHHHHC-----CCCCCCE--EEEE---EEE----EECC---CCCEECCCCCCCCCCCC------------
Q ss_conf 3367888678726414-----8854322--4366---999----9779---97677365435654467------------
Q gi|254781024|r 62 DPIGIDSLLPRWREDK-----GHPFHTV--VKRD---LYW----FLNA---QRSIQIPHFCLPDFMDN------------ 112 (554)
Q Consensus 62 ~p~aL~eL~Pd~~e~~-----g~pl~~~--v~~d---~~~----~l~~---~~~~~~p~~~~p~~~~~------------ 112 (554)
.+..|+||+-.|--+. ||-..+- +..+ .++ ||+. -++..+|..+.|-...+
T Consensus 217 kt~TL~eL~~~YGfDAVFIgtGAG~pkl~NipG~~L~gvysA~dfLtR~nLmKAyefp~~dtPv~~gK~vvviGgGntAv 296 (462)
T TIGR01316 217 KTVTLEELLEKYGFDAVFIGTGAGLPKLLNIPGEELKGVYSANDFLTRVNLMKAYEFPKKDTPVEVGKKVVVIGGGNTAV 296 (462)
T ss_pred CCHHHHHHHHHCCCCEEEEEECCCCCEECCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCEEEEECCCHHHH
T ss_conf 51128888875197079995068987001678434340022346887777765423667887565447689987853678
Q ss_pred -----------C-CCEEEEHHHHH----HHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCC--CCCC---CCC
Q ss_conf -----------8-82688888989----9999999874953306822434776277620145412432--4434---665
Q gi|254781024|r 113 -----------K-EHYIVSLGQVC----RWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKG--KNYD---GTQ 171 (554)
Q Consensus 113 -----------~-g~yiv~r~~fd----~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G--~~k~---~~~ 171 (554)
+ -.-+.+|.+=| .==.++|++-||.+.+=+..++++=||+|.|.+|+...+- -..+ ..+
T Consensus 297 D~artAlRLGaEqvh~~YRrtRedmtAr~EEi~ha~eEGVkfhfl~Qpve~iGdE~G~V~avkf~~~~~~E~~dsg~~r~ 376 (462)
T TIGR01316 297 DAARTALRLGAEQVHVVYRRTREDMTAREEEIKHAEEEGVKFHFLLQPVEVIGDEEGEVKAVKFEKTELLEERDSGEKRK 376 (462)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCEEEEECCCCEEEEEEEEECCCCCHHHCCCCEE
T ss_conf 77766645284236998854777513669999988538928998742168986576518999988537688114578124
Q ss_pred CCCCCCEEEEEEEEEEEECCCCCH
Q ss_conf 787563026774257860664432
Q gi|254781024|r 172 GKHYIAPMLLLSKYMLVGEGACGS 195 (554)
Q Consensus 172 ~~~~~~g~~i~Ak~vI~AdG~~s~ 195 (554)
-+.......+.||-||.|=|-++.
T Consensus 377 ~p~~~~e~~leaD~VI~AiG~~~N 400 (462)
T TIGR01316 377 VPVTDEEVKLEADAVIVAIGQEAN 400 (462)
T ss_pred EECCCCCEEEEECEEEEEECCCCC
T ss_conf 304995178862659997458988
No 180
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.78 E-value=8.8e-07 Score=66.02 Aligned_cols=66 Identities=20% Similarity=0.325 Sum_probs=43.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC--CCCCCCEECH--HHHHHHCC-CHHHHCCC
Q ss_conf 6477999897689999999998089973999978677898--6402740333--67888678-72641488
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGA--HILSGAIIDP--IGIDSLLP-RWREDKGH 79 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~--~i~sG~vl~p--~aL~eL~P-d~~e~~g~ 79 (554)
+++|||||||+||.+||..|.+.|.+-+|.|+++...+=+ ..+|-.++.. .....++| +|.+..+.
T Consensus 3 ~~~iVIIG~G~AG~~aA~~lR~~g~~g~Itli~~E~~~PY~Rp~Lsk~~l~~~~~~~~~l~~~~~y~~~~I 73 (400)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNV 73 (400)
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHCCHHHHCCCCHHHHHCCCHHHHHHCCC
T ss_conf 67299997759999999999806949979999899999886510739987699724432489879987896
No 181
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.75 E-value=5.5e-08 Score=74.39 Aligned_cols=144 Identities=17% Similarity=0.296 Sum_probs=81.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECC-CCCCCCCCC----CCEECHHHHHHHCCCHHHHCCCCCCCE--E
Q ss_conf 364779998976899999999980899739999786-778986402----740333678886787264148854322--4
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKS-AEVGAHILS----GAIIDPIGIDSLLPRWREDKGHPFHTV--V 85 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~-~~pG~~i~s----G~vl~p~aL~eL~Pd~~e~~g~pl~~~--v 85 (554)
++|||||||||-||+-||...|+.| .+|+|+--. ..+|.= .| |++-.-+-++|+ | -.|--.... .
T Consensus 5 ~~yDVIViG~GhAG~EAa~aaar~G--~~t~lit~~~~~ig~m-sCNPsiGGi~KG~lvrEi--d---aLgG~mg~~aD~ 76 (621)
T PRK05192 5 EEYDVIVVGGGHAGCEAALAAARMG--AKTLLLTHNLDTIGQM-SCNPAIGGIAKGHLVREI--D---ALGGEMGKAADK 76 (621)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCEEEE-ECCCCCCCCCHHHHHHHH--H---HCCCHHHHHHHH
T ss_conf 8798899897579999999999679--9679996581311586-045203672165766687--7---536899999988
Q ss_pred EEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH-CCCEECCCCEEEEEEECCCCCEEEEEECCCC
Q ss_conf 366999977997677365435654467882688888989999999987-4953306822434776277620145412432
Q gi|254781024|r 86 KRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEA-LGVEIYCGFTATEIYYGKKGEALGILTGEKG 164 (554)
Q Consensus 86 ~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~-~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G 164 (554)
+.-.+..|+..+. |.. +. ..-.++|..+-+++.+..+. -+.+++.+. |++++. +++++.||.+.+
T Consensus 77 ~~Iq~r~LN~sKG--------pAv-~~-~RaQ~Dr~~Y~~~~~~~l~~~~nl~i~~~~-v~~l~~-~~~~v~GV~~~~-- 142 (621)
T PRK05192 77 TGIQFRMLNTSKG--------PAV-RA-PRAQADRKLYRAAMREILENQPNLTLFQGE-VEDLIV-ENDRVKGVVTQD-- 142 (621)
T ss_pred HHHHHHHHCCCCC--------CCC-CC-HHHHHHHHHHHHHHHHHHHCCCCCEEEEEE-EEEEEE-ECCEEEEEEECC--
T ss_conf 7616876158888--------300-67-398885999999999999649997899814-579998-799999999668--
Q ss_pred CCCCCCCCCCCCCEEEEEEEEEEEECC
Q ss_conf 443466578756302677425786066
Q gi|254781024|r 165 KNYDGTQGKHYIAPMLLLSKYMLVGEG 191 (554)
Q Consensus 165 ~~k~~~~~~~~~~g~~i~Ak~vI~AdG 191 (554)
|..+.|+.||.+.|
T Consensus 143 -------------g~~i~a~~vvlttG 156 (621)
T PRK05192 143 -------------GLEFRAKAVVLTTG 156 (621)
T ss_pred -------------CEEEEEEEEEEECC
T ss_conf -------------70998526998315
No 182
>TIGR00551 nadB L-aspartate oxidase; InterPro: IPR005288 L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbour-joining trees.; GO: 0008734 L-aspartate oxidase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm.
Probab=98.71 E-value=1.8e-07 Score=70.73 Aligned_cols=314 Identities=22% Similarity=0.254 Sum_probs=167.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC--C-CCCCCC---------C-EECHHHHHHH----------
Q ss_conf 364779998976899999999980899739999786778--9-864027---------4-0333678886----------
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEV--G-AHILSG---------A-IIDPIGIDSL---------- 69 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~p--G-~~i~sG---------~-vl~p~aL~eL---------- 69 (554)
|++||+|||.|-|||+||+.|++.+ -+|.||=|+... + ++.-.| + .++.|..|.|
T Consensus 1 ~~~dV~viGsGaAGL~aAlal~~~~--~~V~v~~K~a~~~~~~s~yAQGGIAa~~~~~DdSi~~Hv~DTL~AGaG~cD~~ 78 (546)
T TIGR00551 1 SEADVVVIGSGAAGLSAALALAEKY--RDVVVISKAAEVKESASYYAQGGIAAALAETDDSIDAHVEDTLAAGAGLCDEE 78 (546)
T ss_pred CCCEEEEECCHHHHHHHHHHCCCCC--CEEEEECCCCCCCCCCCCEECCCEEEECCCCCCCHHHHHHHHHHHCCCCCCHH
T ss_conf 9635999752089999998533268--63789758755556752000112663038755856877899998446788688
Q ss_pred -----CC------CHHHHCCCCCCCEEEE--EEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHH-HCC
Q ss_conf -----78------7264148854322436--699997799767736543565446788268888898999999998-749
Q gi|254781024|r 70 -----LP------RWREDKGHPFHTVVKR--DLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAE-ALG 135 (554)
Q Consensus 70 -----~P------d~~e~~g~pl~~~v~~--d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae-~~G 135 (554)
+- +|.-..|.++.+.+.. +.-+-||.+++-+-|- -++-.|- --=....+.|.++|. +.-
T Consensus 79 aV~~v~~~~~~av~~L~~~Gv~FD~~~~gnGee~~~LtrEGgHS~~R-----I~HA~GD--aTGr~~~~~L~~~a~~~p~ 151 (546)
T TIGR00551 79 AVEFVVSDAKEAVQELVEAGVSFDRNEQGNGEERLALTREGGHSYRR-----ILHAAGD--ATGREVISTLLKKARSEPN 151 (546)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCC-----EEEECCC--CCHHHHHHHHHHHHHCCCC
T ss_conf 99999853689999998669220267798874431001335667774-----2773576--3248999999999743776
Q ss_pred CEECCCCEEEEEEEC------CCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCC
Q ss_conf 533068224347762------77620145412432443466578756302677425786066443255421122489988
Q gi|254781024|r 136 VEIYCGFTATEIYYG------KKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDG 209 (554)
Q Consensus 136 vei~~g~~v~~i~~~------e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~ 209 (554)
++|+.+..|.+++++ .+|+++|+.+.+.- | +.=..++|+-||+|.|-.|.|=+.-- +
T Consensus 152 ~~~~~~~~A~~l~i~dkiGlP~~g~~~G~~v~~~n--K--------~~~e~~~a~aVvLAtGG~g~ly~~TT-------N 214 (546)
T TIGR00551 152 VEIIEGEVALDLLIEDKIGLPTTGRVVGVLVVDSN--K--------ETVETLHADAVVLATGGLGKLYSFTT-------N 214 (546)
T ss_pred EEECCCCEEEEEEECCCCCCCCCCEEEEEEEECCC--C--------CEEEEEECCEEEEECCCCCHHHHHHC-------C
T ss_conf 24101214444442250247988879999997167--8--------72377630100032077321003123-------8
Q ss_pred CCHHHHHHHHHHHHH-------HCCCCCCCCEEEE-EE--CCCCCCC-C-CCCEEEEECCCCEEE--------------E
Q ss_conf 889899889888875-------1656678880899-50--4347687-6-641257664798059--------------9
Q gi|254781024|r 210 RQPQKFGLGIKELWK-------IKPQYHRRGLALH-SI--GWPLDMN-T-SGGGFVYHFDDNLVS--------------I 263 (554)
Q Consensus 210 ~~p~~~~~gvke~~e-------i~~~~~~~G~~~h-~~--g~~~~~~-~-~gggwiy~~~d~~~~--------------i 263 (554)
.. ..-+.|+--.|. +..-.+.|-...+ -. -++|-.+ . +-|+.+--...++.. |
T Consensus 215 p~-~stGDGIala~raG~~v~DLEF~QFHPT~L~~~~~GG~~~LitEAvRGEGA~Lvd~~G~Rf~~~~hp~GeLAPRDiV 293 (546)
T TIGR00551 215 PK-VSTGDGIALAWRAGVEVRDLEFVQFHPTALVKPRVGGRYFLITEAVRGEGAILVDRDGKRFMADVHPRGELAPRDIV 293 (546)
T ss_pred CC-CCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEECCCCCEECCCCCCCCCCCCHHHH
T ss_conf 87-42314689998728722046342567211137887898764001100387423558886702677888876740488
Q ss_pred EE----------------EECCCCCCCCCCHHHHHHHHH-HCCCHHHHHCCC--------CEECCCCEECCCCCCCCC--
Q ss_conf 99----------------832666566889889999986-080045650388--------263035134005421248--
Q gi|254781024|r 264 GF----------------VLHLDYRNPWISAYEELQRFK-THPDIRIIFTEG--------ERLEYGARVISEGGWQSV-- 316 (554)
Q Consensus 264 G~----------------v~~ld~~~~~~~~~~~lq~fk-~hp~i~~~l~gg--------~~~~yga~~ip~gg~~s~-- 316 (554)
.- ++-||.+. +.. ++|+ ..|.|...+.+. =++.-+||. .+||....
T Consensus 294 aRAI~~~m~~~~~dPtqacVfLD~s~--Ie~----~~f~~RFP~I~~~c~~~GID~~~~~IPv~P~AHY-~~GGi~vD~~ 366 (546)
T TIGR00551 294 ARAIDEEMKKGGKDPTQACVFLDASG--IED----DFFKSRFPTITAKCRGAGIDIVREPIPVVPAAHY-TMGGISVDAY 366 (546)
T ss_pred HHHHHHHHHHCCCCCCEEEEEEECCC--CCH----HHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCE-EECCEEECCC
T ss_conf 99999999722879340688874358--883----4652127278999985788755587154466715-7367887576
Q ss_pred CCCCCCCEEEECCCCCC-C---CCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 74230887996123233-1---36643522689999999999999987
Q gi|254781024|r 317 PKLSFPGGSLIGCAAGF-V---NLLRIKGSHNAIISGMLAAEKIVERL 360 (554)
Q Consensus 317 pk~~~~g~lLvGDAAG~-v---nP~~g~GI~~Am~SG~lAAEai~eal 360 (554)
-++.-+|+--+|+.|.. + |=+-+.=.--++.+|.-|||.|...-
T Consensus 367 g~T~~~GLYAiGE~A~tGlHGANRLASNSLLEclV~G~~aa~~i~~~~ 414 (546)
T TIGR00551 367 GRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGLRAARAISRKP 414 (546)
T ss_pred CEECCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 332134301200243066511467777878899873289999986535
No 183
>PRK07846 mycothione/glutathione reductase; Reviewed
Probab=98.69 E-value=3.2e-07 Score=69.06 Aligned_cols=33 Identities=30% Similarity=0.507 Sum_probs=28.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 6477999897689999999998089973999978677
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
+|||||||+||||.++|.+++ | ++|+|+||+..
T Consensus 1 ~YDviVIG~Gpgg~~~a~~~a--G--~kValVE~~~~ 33 (453)
T PRK07846 1 HYDLIIIGTGSGNSILDERFA--D--KRIAIVEKGTF 33 (453)
T ss_pred CCCEEEECCCHHHHHHHHHHC--C--CEEEEEECCCC
T ss_conf 977899898889999999982--9--92999978997
No 184
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ; InterPro: IPR012831 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobZ, which is essential for cobalamin biosynthesis and is complemented by precorrin 3B synthase CobG (1.3.99.1 from EC). The enzyme has been shown to contain flavin, haem and Fe-S cluster cofactors, and is believed to require dioxygen as a substrate. In Rhodobacter capsulatus, CobZ is found as a N-terminal domain, whereas in other species it exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (IPR012830 from INTERPRO)..
Probab=98.69 E-value=5e-08 Score=74.70 Aligned_cols=276 Identities=18% Similarity=0.143 Sum_probs=144.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHH---H----HCCC-------HHHHCCCC
Q ss_conf 47799989768999999999808997399997867789864027403336788---8----6787-------26414885
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGID---S----LLPR-------WREDKGHP 80 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~---e----L~Pd-------~~e~~g~p 80 (554)
.||+|||||-|||-||+..++.| -+|+|||-.+-+. ..|+.=-.|-|+ | .++| |++. .+
T Consensus 2 V~VLvIGgG~AgLCAAi~ArraG--AsVllLeaAPr~~---rGGNarHgRN~R~~hd~p~d~~~D~YpaEEf~~dL--~~ 74 (467)
T TIGR02485 2 VDVLVIGGGLAGLCAAIEARRAG--ASVLLLEAAPRDL---RGGNARHGRNLRVAHDIPLDFLRDAYPAEEFRRDL--LK 74 (467)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CEEEEECCCCCCC---CCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHH--HH
T ss_conf 23788764258899999986379--6798402478532---57865333451110157888645787378999875--43
Q ss_pred CCCEEEEEEEE-EECCCC----------CEECCCCCCCCCCCCCCCEEEEHH---------HHHHHHHHHHHHCCCEECC
Q ss_conf 43224366999-977997----------677365435654467882688888---------9899999999874953306
Q gi|254781024|r 81 FHTVVKRDLYW-FLNAQR----------SIQIPHFCLPDFMDNKEHYIVSLG---------QVCRWLKNKAEALGVEIYC 140 (554)
Q Consensus 81 l~~~v~~d~~~-~l~~~~----------~~~~p~~~~p~~~~~~g~yiv~r~---------~fd~~L~~~Ae~~Gvei~~ 140 (554)
...--+.+..- ++-+.. .+.+. |.. .|+.-+||. -+...|...||++||+|..
T Consensus 75 vtgg~t~~~l~~L~i~r~s~~~~w~~~~GVhl~----P~~---aG~lpysRrtaF~~GGGkAl~NAly~sAerLGv~Iry 147 (467)
T TIGR02485 75 VTGGRTDERLARLLIERASSILRWLIAHGVHLQ----PAA---AGVLPYSRRTAFLLGGGKALVNALYASAERLGVEIRY 147 (467)
T ss_pred HCCCCCCHHHHHHHHHHCCHHHHHHHHCCCEEC----CCC---CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCEEEEC
T ss_conf 127874115789988720023689996794336----632---5657601111123576189999999988555725414
Q ss_pred CCEEEEEEECC-CCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCC--CHHHH--
Q ss_conf 82243477627-76201454124324434665787563026774257860664432554211224899888--89899--
Q gi|254781024|r 141 GFTATEIYYGK-KGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGR--QPQKF-- 215 (554)
Q Consensus 141 g~~v~~i~~~e-~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~--~p~~~-- 215 (554)
+..|..+..++ +++.+.+.+-..+ +..|++|-+|.|.|-.++=...|-+.|+-+... ..+.|
T Consensus 148 ~~~V~ri~~~~~g~~~i~~~~v~~~-------------~~rI~t~a~VlaaGG~ganr~WLr~~~G~~a~geWPadn~~~ 214 (467)
T TIGR02485 148 DAEVERIEREEDGRAFIAARLVAAA-------------DERIATKAVVLAAGGLGANREWLRKAFGSRAEGEWPADNFLV 214 (467)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEECC-------------CCCEEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHCEEE
T ss_conf 7730002645678620121466226-------------881224688886178888979999836887577885110012
Q ss_pred -----HHHHHHHHHHC-CCCC---CCCEEEEEECCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf -----88988887516-5667---88808995043476876641257664798059999832666566889889999986
Q gi|254781024|r 216 -----GLGIKELWKIK-PQYH---RRGLALHSIGWPLDMNTSGGGFVYHFDDNLVSIGFVLHLDYRNPWISAYEELQRFK 286 (554)
Q Consensus 216 -----~~gvke~~ei~-~~~~---~~G~~~h~~g~~~~~~~~gggwiy~~~d~~~~iG~v~~ld~~~~~~~~~~~lq~fk 286 (554)
..|.=-..-+. .+-. +|+ .-|.+-.+-. .+..=+-|-.--|. +++|+|+.-+-.. |.
T Consensus 215 RGTpy~~G~LL~~ll~d~Ga~aiGdPt-~~HvVavDaR-aP~~DgGIvtRid~-~~lG~VV~r~G~R-----------f~ 280 (467)
T TIGR02485 215 RGTPYAKGRLLKLLLDDEGADAIGDPT-DAHVVAVDAR-APLYDGGIVTRIDS-VSLGVVVDRDGER-----------FA 280 (467)
T ss_pred CCCCHHCCHHHHHHHHHCCCCCCCCCC-CCCEEEECCC-CCCCCCCEEEEECE-EECCEEECCCCCC-----------HH
T ss_conf 588021026899998541643037798-7306765688-88457835744121-2113178897761-----------24
Q ss_pred HCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCCCEEEEC-CCCCCCCCCCCCCH
Q ss_conf 080045650388263035134005421248742308879961-23233136643522
Q gi|254781024|r 287 THPDIRIIFTEGERLEYGARVISEGGWQSVPKLSFPGGSLIG-CAAGFVNLLRIKGS 342 (554)
Q Consensus 287 ~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~g~lLvG-DAAG~vnP~~g~GI 342 (554)
.. -.....++-..-++.|.. .| -.-+++|++ +|++.+-|.-.-+|
T Consensus 281 de----Ga~~~P~rya~Wgr~~a~-----~P--gq~ay~lld~~a~~r~~P~a~pp~ 326 (467)
T TIGR02485 281 DE----GADSQPKRYAVWGRRVAD-----RP--GQLAYLLLDAKALKRLAPSALPPV 326 (467)
T ss_pred HC----CCCCCCCEEECHHHHHHC-----CC--CCEEEEEECCHHHHHCCCCCCCCC
T ss_conf 13----667788413001367635-----89--851532432057863587456978
No 185
>KOG1399 consensus
Probab=98.68 E-value=2e-07 Score=70.56 Aligned_cols=141 Identities=23% Similarity=0.299 Sum_probs=82.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC----CEECHHHHHHHCCCHHHHCCCCCCCEEEEE
Q ss_conf 3647799989768999999999808997399997867789864027----403336788867872641488543224366
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSG----AIIDPIGIDSLLPRWREDKGHPFHTVVKRD 88 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG----~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d 88 (554)
|--+|+|||||||||++|..|.+.| +.|.++||...+|..-..- .+.. ...+.| .+..
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g--~~v~vfEr~~~iGGlW~y~~~~~~~~s-s~Y~~l------------~tn~--- 66 (448)
T KOG1399 5 MSKDVAVIGAGPAGLAAARELLREG--HEVVVFERTDDIGGLWKYTENVEVVHS-SVYKSL------------RTNL--- 66 (448)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCCEEEEECCCCCCEEEECCCCCCCCC-CHHHHH------------HCCC---
T ss_conf 7785489785668889999998779--983699705874545860576565543-243421------------0468---
Q ss_pred EEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCC--EECCCCEEEEEEECCC-CCEEEEEECCCCC
Q ss_conf 999977997677365435654467882688888989999999987495--3306822434776277-6201454124324
Q gi|254781024|r 89 LYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGV--EIYCGFTATEIYYGKK-GEALGILTGEKGK 165 (554)
Q Consensus 89 ~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gv--ei~~g~~v~~i~~~e~-g~vvgv~t~~~G~ 165 (554)
+.....++.+.-| .+..+|.-++.++..+|-.-|+..+. .|..++.+..+....+ -.. |.+.+.+.
T Consensus 67 ------pKe~~~~~dfpf~---~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~--V~~~~~~~ 135 (448)
T KOG1399 67 ------PKEMMGYSDFPFP---ERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWR--VTTKDNGT 135 (448)
T ss_pred ------CHHHHCCCCCCCC---CCCCCCCCCHHHHHHHHHHHHHHCCHHHHEEECCCEEEEEECCCCCEE--EEEECCCC
T ss_conf ------8444257998975---457111788889999999998735834626734657998405677416--89814886
Q ss_pred CCCCCCCCCCCCEEEEEEEEEEEECCCC
Q ss_conf 4346657875630267742578606644
Q gi|254781024|r 166 NYDGTQGKHYIAPMLLLSKYMLVGEGAC 193 (554)
Q Consensus 166 ~k~~~~~~~~~~g~~i~Ak~vI~AdG~~ 193 (554)
. .++.-.+.|+.|.|..
T Consensus 136 ----------~-~~~~ifd~VvVctGh~ 152 (448)
T KOG1399 136 ----------Q-IEEEIFDAVVVCTGHY 152 (448)
T ss_pred ----------C-EEEEEEEEEEECCCCC
T ss_conf ----------4-0589963899955676
No 186
>KOG4254 consensus
Probab=98.66 E-value=2.2e-08 Score=77.16 Aligned_cols=65 Identities=22% Similarity=0.323 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHH
Q ss_conf 88989999999987495330682243477627762014541243244346657875630267742578606644325542
Q gi|254781024|r 120 LGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQ 199 (554)
Q Consensus 120 r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~ 199 (554)
.+..-..+++-|+++|++|++...|.+|+.+. |.++||+..+ |.++++|.||--.+..-...+-
T Consensus 263 ~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~-gka~GV~L~d---------------G~ev~sk~VvSNAt~~~Tf~kL 326 (561)
T KOG4254 263 MGAVSFAIAEGAKRAGAEIFTKATVQSILLDS-GKAVGVRLAD---------------GTEVRSKIVVSNATPWDTFEKL 326 (561)
T ss_pred HHHHHHHHHHHHHHCCCEEEEHHHHHHEECCC-CEEEEEEECC---------------CCEEEEEEEECCCCHHHHHHHH
T ss_conf 06899999999986061421021144603138-8278789558---------------8587711565178467778874
Q ss_pred H
Q ss_conf 1
Q gi|254781024|r 200 L 200 (554)
Q Consensus 200 l 200 (554)
+
T Consensus 327 l 327 (561)
T KOG4254 327 L 327 (561)
T ss_pred C
T ss_conf 7
No 187
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.65 E-value=4.2e-07 Score=68.22 Aligned_cols=290 Identities=18% Similarity=0.190 Sum_probs=125.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC----CCCC-------EECHHHHHHHCCCHHHH---CCCCC
Q ss_conf 7799989768999999999808997399997867789864----0274-------03336788867872641---48854
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI----LSGA-------IIDPIGIDSLLPRWRED---KGHPF 81 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i----~sG~-------vl~p~aL~eL~Pd~~e~---~g~pl 81 (554)
+|+|||+|+||++||+.|+++| ++|.|+||+.=+|... +-|+ .+.|+ +|+|-+|.|. .|.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG--~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~--~~~F~~~Ve~~~~~gl-- 76 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAG--REVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPR--DELFLRAVEALRDDGL-- 76 (331)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCCHHEECCCCCCCCCCCEEECCC--CHHHHHHHHHHHHCCC--
T ss_conf 4799756368899999998669--579999738875531100005786534555041578--6579999999986785--
Q ss_pred CCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEE--EEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEE
Q ss_conf 322436699997799767736543565446788268--888898999999998749533068224347762776201454
Q gi|254781024|r 82 HTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYI--VSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGIL 159 (554)
Q Consensus 82 ~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yi--v~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~ 159 (554)
..+-.+.+|-.+... + ++.-.... |+ -..+.+-+.|+.. .+|..+++|+++-..+++..+-
T Consensus 77 -V~~W~~~~~~~~~~~---~-----~~~~d~~p-yvg~pgmsalak~LAtd-----L~V~~~~rVt~v~~~~~~W~l~-- 139 (331)
T COG3380 77 -VDVWTPAVWTFTGDG---S-----PPRGDEDP-YVGEPGMSALAKFLATD-----LTVVLETRVTEVARTDNDWTLH-- 139 (331)
T ss_pred -EEECCCCCCCCCCCC---C-----CCCCCCCC-CCCCCCHHHHHHHHHCC-----CHHHHHHHHHHHEECCCEEEEE--
T ss_conf -430351110113688---8-----99888776-23674367999987245-----0434422314312338716898--
Q ss_pred ECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHH---------HHHHHHHHHHHC--CC
Q ss_conf 1243244346657875630267742578606644325542112248998888989---------988988887516--56
Q gi|254781024|r 160 TGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQK---------FGLGIKELWKIK--PQ 228 (554)
Q Consensus 160 t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~---------~~~gvke~~ei~--~~ 228 (554)
+.+.+ ....++.||.|-=+--... |. .-....-|+. |.--+..+.-.+ ..
T Consensus 140 ~~~g~--------------~~~~~d~vvla~PAPQ~~~--LL---t~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~ 200 (331)
T COG3380 140 TDDGT--------------RHTQFDDVVLAIPAPQTAT--LL---TTDADDLPAALRAALADVVYAPCWSAVLGYPQPLD 200 (331)
T ss_pred ECCCC--------------CCCCCCEEEEECCCCCCHH--HC---CCCCCCCHHHHHHHHCCCEEHHHHHHHHCCCCCCC
T ss_conf 46887--------------6455343899368875312--21---75545436999976325142058999846886678
Q ss_pred CCCCCEEEEEECCCCCCCCCCCEEEEEC--CCCEEEE--EEEEC--CCCCCCCC--CHHHHHHHHHHCCCHHHHHCCCCE
Q ss_conf 6788808995043476876641257664--7980599--99832--66656688--988999998608004565038826
Q gi|254781024|r 229 YHRRGLALHSIGWPLDMNTSGGGFVYHF--DDNLVSI--GFVLH--LDYRNPWI--SAYEELQRFKTHPDIRIIFTEGER 300 (554)
Q Consensus 229 ~~~~G~~~h~~g~~~~~~~~gggwiy~~--~d~~~~i--G~v~~--ld~~~~~~--~~~~~lq~fk~hp~i~~~l~gg~~ 300 (554)
...+|.-. +-..-+|+--. +.+.+-. ++|++ .+....+. ++.+..+. +++ ... .+.+...
T Consensus 201 ~P~~G~~v---------dg~~laWla~d~sK~g~~p~~~~~vvqasp~wSr~h~~~~~e~~i~~-l~a-A~~-~~~~~~~ 268 (331)
T COG3380 201 RPWPGNFV---------DGHPLAWLARDASKKGHVPDGEIWVVQASPDWSREHLDHPAEQVIVA-LRA-AAQ-ELDGDRL 268 (331)
T ss_pred CCCCCCCC---------CCCEEEEEECCCCCCCCCCCCCEEEEEECCHHHHHHHCCCHHHHHHH-HHH-HHH-HCCCCCC
T ss_conf 88898621---------78700220003467887876865999708267797626987889999-987-520-0447778
Q ss_pred ECCCCEECCCCCCCCCCCCCCCCEEEECCCCCCC----CCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 3035134005421248742308879961232331----36643522689999999999999987
Q gi|254781024|r 301 LEYGARVISEGGWQSVPKLSFPGGSLIGCAAGFV----NLLRIKGSHNAIISGMLAAEKIVERL 360 (554)
Q Consensus 301 ~~yga~~ip~gg~~s~pk~~~~g~lLvGDAAG~v----nP~~g~GI~~Am~SG~lAAEai~eal 360 (554)
..-.-...-.-.+++|.-...+-.|.+|+.+=+ |=..|.=+.-|..||.-||+-|.++|
T Consensus 269 -~~p~~s~~H~WrYA~P~~~~~~~~L~ad~~~~l~~cGDwc~GgrVEgA~LSGlAaA~~i~~~L 331 (331)
T COG3380 269 -PEPDWSDAHRWRYAIPNDAVAGPPLDADRELPLYACGDWCAGGRVEGAVLSGLAAADHILNGL 331 (331)
T ss_pred -CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHCCHHHHHHHHHCC
T ss_conf -860577750431036530104775115778762664033457611477750289999987229
No 188
>PRK02106 choline dehydrogenase; Validated
Probab=98.64 E-value=3.6e-08 Score=75.68 Aligned_cols=37 Identities=46% Similarity=0.766 Sum_probs=32.7
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 03647799989768999999999808997399997867
Q gi|254781024|r 12 VFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 12 ~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
.+|||+||||||+||++.|.+|++ ..+++|||||+|.
T Consensus 3 ~~eyDyIIVGgG~AG~vvA~rLse-~~~~~VllLEaG~ 39 (555)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSE-DPDVSVLLLEAGG 39 (555)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHH-CCCCEEEEECCCC
T ss_conf 871288998966899999999834-9898599986899
No 189
>PRK07208 hypothetical protein; Provisional
Probab=98.63 E-value=4.6e-08 Score=74.91 Aligned_cols=39 Identities=51% Similarity=0.681 Sum_probs=35.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 64779998976899999999980899739999786778986
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAH 54 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~ 54 (554)
.-+|+|||||||||+||++|+++| ++|.||||...+|..
T Consensus 3 ~kkv~IiGAG~~GL~aA~~L~~~g--~~v~vlEk~~~vGGl 41 (474)
T PRK07208 3 KKSVVIIGAGPAGLTAAYELVKRG--YPVTILEADPEVGGI 41 (474)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCE
T ss_conf 875999897689999999998689--975999789987544
No 190
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.60 E-value=5.6e-08 Score=74.36 Aligned_cols=38 Identities=45% Similarity=0.525 Sum_probs=35.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 4779998976899999999980899739999786778986
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAH 54 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~ 54 (554)
.+|+||||||||++||++|+|+| ++|+|+||...+|.-
T Consensus 18 kkV~IIGaGPaGlsAA~~aa~~G--~~v~viEk~~~~GG~ 55 (350)
T PRK12770 18 KKVAIIGAGPAGLAAAGYLACLG--HEVHVYDKLPEPGGL 55 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CCEEEEEECCCCCEE
T ss_conf 98999995588999999999789--985999536969828
No 191
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.60 E-value=2.7e-05 Score=55.73 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=45.8
Q ss_pred EEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHH
Q ss_conf 88888989999999987495330682243477627762014541243244346657875630267742578606644325
Q gi|254781024|r 117 IVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSL 196 (554)
Q Consensus 117 iv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~l 196 (554)
.++-.++++.|++.|+ .|++++.++.|+++..+.++ +.+.+.+ +..++|+.||.|.|+.+..
T Consensus 131 ~v~p~~~~~al~~~a~-~g~~~~~~~~V~~i~~~g~~--~~v~~~~---------------g~~~~ad~vV~AaG~~s~~ 192 (381)
T TIGR03197 131 WLSPPQLCRALLAHAG-IRLTLHFNTEITSLERDGEG--WQLLDAN---------------GEVIAASVVVLANGAQAGQ 192 (381)
T ss_pred EECHHHHHHHHHHHHH-HCCEEEECCEEEEEEEECCE--EEEEECC---------------CCEEECCEEEECCCCCHHH
T ss_conf 5478999999999997-29789936258999995998--9999899---------------9889735589855420355
No 192
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.60 E-value=2.7e-07 Score=69.61 Aligned_cols=35 Identities=40% Similarity=0.623 Sum_probs=31.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 7799989768999999999808997399997867789
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG 52 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG 52 (554)
.||||||||||.+||++++|+| ++|+|+||+..-|
T Consensus 2 ~vvVIG~GpaG~~aA~~aa~~G--~kV~lIEk~~~GG 36 (458)
T PRK06912 2 KLVIIGGGPAGYVAAITAAQNG--KEVTLIDEADLGG 36 (458)
T ss_pred EEEEEEECHHHHHHHHHHHHCC--CEEEEEECCCCCC
T ss_conf 4999900889999999999785--9599995899787
No 193
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit; InterPro: IPR005884 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumaratereductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein . The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species . The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. ; GO: 0016491 oxidoreductase activity, 0006118 electron transport, 0009061 anaerobic respiration.
Probab=98.59 E-value=4.7e-07 Score=67.90 Aligned_cols=168 Identities=21% Similarity=0.340 Sum_probs=103.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC-----CEE-CHHHHHHHCC------CHHHHCCCC
Q ss_conf 3647799989768999999999808997399997867789864027-----403-3367888678------726414885
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSG-----AII-DPIGIDSLLP------RWREDKGHP 80 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG-----~vl-~p~aL~eL~P------d~~e~~g~p 80 (554)
++.|++|||||=|||=|||..|+.++.++|+||-|==--|+|.++. +|+ +-.+|++-|- ||.=++.+
T Consensus 2 ~~~~i~viGaGGAGLRaAIA~A~aNP~l~vAliSKVYPMRSHTVaAEGGsAAV~~D~DSld~H~~DTV~GGDWLC~QD~- 80 (585)
T TIGR01176 2 LQADIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTKDDDSLDEHFHDTVSGGDWLCEQDV- 80 (585)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEECCCCCCEEECCCCCCHHHHCCCCCCCCCCCCCHHH-
T ss_conf 4323678837844689999998408985378985115776411113553112105641245414453456643220218-
Q ss_pred CCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHH-----------------HHHHHHHHHH-HHCCCEECCCC
Q ss_conf 43224366999977997677365435654467882688888-----------------9899999999-87495330682
Q gi|254781024|r 81 FHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLG-----------------QVCRWLKNKA-EALGVEIYCGF 142 (554)
Q Consensus 81 l~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~-----------------~fd~~L~~~A-e~~Gvei~~g~ 142 (554)
++..|.+ .+..-+.+..|.=|..-+..|...|+|- .+-+-|.+.. .---+.=+...
T Consensus 81 Ve~FV~~------ap~E~~QlE~WGCPWSRk~dG~V~VR~FGGMK~~RTWFAADKTGFH~LHTLFQ~~l~y~~i~R~DE~ 154 (585)
T TIGR01176 81 VEYFVAE------APKELVQLEHWGCPWSRKPDGRVNVRRFGGMKVERTWFAADKTGFHLLHTLFQTSLKYPQIKRYDEY 154 (585)
T ss_pred HHHHHHH------CCHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCEEHHCE
T ss_conf 9998741------3345664312788877478985776226881221001011223426889999863056331000101
Q ss_pred EEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHH
Q ss_conf 24347762776201454124324434665787563026774257860664432554
Q gi|254781024|r 143 TATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTR 198 (554)
Q Consensus 143 ~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak 198 (554)
-|.++++ ++|.|.|+..-.+-.. .=.+|+|+.||.|.|-.|+|=+
T Consensus 155 F~~~lLV-DdG~v~GLvAi~~~~G----------~l~~I~A~aVvlaTGGaGRVy~ 199 (585)
T TIGR01176 155 FVVDLLV-DDGRVRGLVAIELAEG----------RLVTIKADAVVLATGGAGRVYR 199 (585)
T ss_pred EEEEEEE-ECCEEEEEEEEEECCC----------EEEEEEEEEEEEECCCCCCCEE
T ss_conf 3555575-1773555788863367----------0688874278993089873033
No 194
>KOG2960 consensus
Probab=98.58 E-value=2.4e-07 Score=69.95 Aligned_cols=154 Identities=23% Similarity=0.369 Sum_probs=90.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC-CCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEE
Q ss_conf 647799989768999999999808997399997867789864-0274033367888678726414885432243669999
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI-LSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWF 92 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i-~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~ 92 (554)
|-||||||||.||++||+.+++..++++|++||..-.||..- +.|-++....++. | --.|
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRK-----------P--------AhLF 136 (328)
T KOG2960 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRK-----------P--------AHLF 136 (328)
T ss_pred CCCEEEECCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHCC-----------H--------HHHH
T ss_conf 04569987786654146663036998469999700369974340101545654247-----------2--------8888
Q ss_pred ECCCCCEECCCCCCCCCCCCCCCEEEEH--HHHHH-HHHHHHHHCCCEECCCCEEEEEEECCCC----CEEEEEECCCCC
Q ss_conf 7799767736543565446788268888--89899-9999998749533068224347762776----201454124324
Q gi|254781024|r 93 LNAQRSIQIPHFCLPDFMDNKEHYIVSL--GQVCR-WLKNKAEALGVEIYCGFTATEIYYGKKG----EALGILTGEKGK 165 (554)
Q Consensus 93 l~~~~~~~~p~~~~p~~~~~~g~yiv~r--~~fd~-~L~~~Ae~~Gvei~~g~~v~~i~~~e~g----~vvgv~t~~~G~ 165 (554)
|.+ +.+|+ .+++.|+|-. ..|.. .+.+....-.|.+|..+.|.+++..+.. ++.||.|+=.-+
T Consensus 137 L~E---igvpY-------edegdYVVVKHAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g~~g~~rvaGVVTNWtLV 206 (328)
T KOG2960 137 LQE---IGVPY-------EDEGDYVVVKHAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPGEKGEVRVAGVVTNWTLV 206 (328)
T ss_pred HHH---HCCCC-------CCCCCEEEEEEHHHHHHHHHHHHHCCCCCEEECHHHHHHHHCCCCCCCCEEEEEEEEEEEEE
T ss_conf 887---38973-------46787799950788999999998627860000101135550036867736887897401776
Q ss_pred CCCCCCCCCCCCEEEEEEEEEEEECCCCCHHH
Q ss_conf 43466578756302677425786066443255
Q gi|254781024|r 166 NYDGTQGKHYIAPMLLLSKYMLVGEGACGSLT 197 (554)
Q Consensus 166 ~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~la 197 (554)
. ....+..-.++..+.+++|+-+.|..|..+
T Consensus 207 ~-qnHgtQsCMDPNviea~~vvS~tGHDGPFG 237 (328)
T KOG2960 207 T-QNHGTQSCMDPNVIEAAVVVSTTGHDGPFG 237 (328)
T ss_pred E-ECCCCCCCCCCCEEEEEEEEECCCCCCCCH
T ss_conf 5-035863237977056799997157888822
No 195
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.56 E-value=2.3e-07 Score=70.08 Aligned_cols=33 Identities=30% Similarity=0.523 Sum_probs=27.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 6477999897689999999998089973999978677
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
+||||||||||||.++|.+++ | .+|+|+||+..
T Consensus 2 ~YDviVIGaGpgG~~~a~~~a--g--~kValvEk~~~ 34 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRFA--D--KRIAIVEKGTF 34 (452)
T ss_pred CCCEEEECCCHHHHHHHHHHC--C--CEEEEEECCCC
T ss_conf 476899998689999999982--9--90999978992
No 196
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.55 E-value=1.9e-05 Score=56.70 Aligned_cols=45 Identities=22% Similarity=0.148 Sum_probs=34.9
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 230887996123233136643522689999999999999987458
Q gi|254781024|r 319 LSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNG 363 (554)
Q Consensus 319 ~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g 363 (554)
...|++..+||+|.+.+...-+--..|+..|..+|+.|...+...
T Consensus 269 ~~~~~VfAiGD~a~~~~~p~pk~g~~A~~qa~~~a~Ni~~~l~g~ 313 (364)
T TIGR03169 269 LSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLRGQ 313 (364)
T ss_pred CCCCCEEEECCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 899999997154368899999743889999999999999996699
No 197
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1.9e-07 Score=70.67 Aligned_cols=113 Identities=23% Similarity=0.431 Sum_probs=67.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEE-ECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEE
Q ss_conf 64779998976899999999980899739999-78677898640274033367888678726414885432243669999
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVIL-EKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWF 92 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~Vlvl-EK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~ 92 (554)
-|||+|||+||||.+||++.||.| ++.-|+ || ..|-++++..++-+
T Consensus 211 ~yDVLvVGgGPAgaaAAIYaARKG--iRTGl~aer--------fGGQvldT~~IENf----------------------- 257 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKG--IRTGLVAER--------FGGQVLDTMGIENF----------------------- 257 (520)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHC--CHHHHHHHH--------HCCEECCCCCHHHE-----------------------
T ss_conf 834999868863167899998612--111001565--------18820000033330-----------------------
Q ss_pred ECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEEC-CCCCEEEEEECCCCCCCCCCC
Q ss_conf 7799767736543565446788268888898999999998749533068224347762-776201454124324434665
Q gi|254781024|r 93 LNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYG-KKGEALGILTGEKGKNYDGTQ 171 (554)
Q Consensus 93 l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~-e~g~vvgv~t~~~G~~k~~~~ 171 (554)
+++|+ ..-.+|-+-|.++..+..++++..-+++.+... +.+..+-|..
T Consensus 258 ------Isv~~--------------teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l----------- 306 (520)
T COG3634 258 ------ISVPE--------------TEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVEL----------- 306 (520)
T ss_pred ------ECCCC--------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHCCEECCCCCCCEEEEE-----------
T ss_conf ------05654--------------54668999999987646824553343420201578886079995-----------
Q ss_pred CCCCCCEEEEEEEEEEEECCCCC
Q ss_conf 78756302677425786066443
Q gi|254781024|r 172 GKHYIAPMLLLSKYMLVGEGACG 194 (554)
Q Consensus 172 ~~~~~~g~~i~Ak~vI~AdG~~s 194 (554)
+.|..+++|-+|.|.|++=
T Consensus 307 ----~nGavLkaktvIlstGArW 325 (520)
T COG3634 307 ----ANGAVLKARTVILATGARW 325 (520)
T ss_pred ----CCCCEECCCEEEEECCCCH
T ss_conf ----4783511316998427642
No 198
>TIGR02734 crtI_fam phytoene desaturase; InterPro: IPR014105 Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family are CrtI and are part of flavin containing amine oxidoreductase family. It is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis..
Probab=98.55 E-value=1.5e-07 Score=71.44 Aligned_cols=52 Identities=37% Similarity=0.574 Sum_probs=43.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC----CC-C--------CEECHHHHHHHC
Q ss_conf 799989768999999999808997399997867789864----02-7--------403336788867
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI----LS-G--------AIIDPIGIDSLL 70 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i----~s-G--------~vl~p~aL~eL~ 70 (554)
++|||||.|||++|++|++.| ++|.||||...||.=. -. | -++.|.+++|||
T Consensus 1 a~VIGAG~gGLA~A~rL~~~G--~~vtv~E~~d~pGGRA~~~~~~fGf~fD~GPTv~t~P~~~~elF 65 (526)
T TIGR02734 1 AVVIGAGFGGLALAIRLQAAG--IRVTVVEKRDKPGGRAGVLEDDFGFRFDTGPTVITMPEALEELF 65 (526)
T ss_pred CEEECCCHHHHHHHHHHHHCC--CEEEEEEECCCCCCEEEEEECCCCEEEECCCCEEECHHHHHHHH
T ss_conf 968577768999999997379--52899860689875055688157546605882454467899999
No 199
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.54 E-value=1.3e-07 Score=71.83 Aligned_cols=37 Identities=38% Similarity=0.596 Sum_probs=33.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 477999897689999999998089973999978677898
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGA 53 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~ 53 (554)
--|+|||+|||||+||+.|+++| ++|.|+||...+|.
T Consensus 551 KKVAVIGsGPAGLaAA~~Lar~G--h~VTVFEk~~~~GG 587 (1032)
T PRK09853 551 HPVAVIGAGPAGLAAGYFLARAG--HPVTVFEREENAGG 587 (1032)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCC
T ss_conf 97999896889999999999779--93699815897884
No 200
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.51 E-value=2.5e-07 Score=69.77 Aligned_cols=139 Identities=20% Similarity=0.295 Sum_probs=77.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC-CCCCCCCC----CCEEC---HHHHHHHCCCHHHHCCCCCCCEE
Q ss_conf 647799989768999999999808997399997867-78986402----74033---36788867872641488543224
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA-EVGAHILS----GAIID---PIGIDSLLPRWREDKGHPFHTVV 85 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~-~pG~~i~s----G~vl~---p~aL~eL~Pd~~e~~g~pl~~~v 85 (554)
+|||||||||-||+-||...||.| .+++||--.. .+|.- -| |+.=. .+.+|-| .. ++..+-..+.
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG--~ktlLlT~~~dtig~m-sCNPaIGG~~KG~lvrEIDAL-GG--~Mg~~~D~~~- 76 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMG--AKTLLLTLNLDTIGEM-SCNPAIGGPGKGHLVREIDAL-GG--LMGKAADKAG- 76 (621)
T ss_pred CCCEEEECCCCCCHHHHHHHHCCC--CEEEEEECCCCCEEEC-CCCCCCCCCCCCEEEEEEHHC-CC--HHHHHHHHCC-
T ss_conf 785699899842047777664369--8079997377744650-356445773553267752412-45--5777666507-
Q ss_pred EEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHC------CCEECCCCEEEEEEECCCCCEEEEE
Q ss_conf 3669999779976773654356544678826888889899999999874------9533068224347762776201454
Q gi|254781024|r 86 KRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEAL------GVEIYCGFTATEIYYGKKGEALGIL 159 (554)
Q Consensus 86 ~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~------Gvei~~g~~v~~i~~~e~g~vvgv~ 159 (554)
-.+..|+.. +..+.--.|.+-|+|+..++... ..+++.+. |.+++.+++.+++||.
T Consensus 77 --IQ~r~LN~s---------------KGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~-v~dli~e~~~~v~GV~ 138 (621)
T COG0445 77 --IQFRMLNSS---------------KGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGE-VEDLIVEEGQRVVGVV 138 (621)
T ss_pred --CCHHHCCCC---------------CCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEHHHH-HHHHHHCCCCEEEEEE
T ss_conf --865333677---------------7621045065442899999999998549995524766-6787133797689999
Q ss_pred ECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCC
Q ss_conf 124324434665787563026774257860664
Q gi|254781024|r 160 TGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGA 192 (554)
Q Consensus 160 t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~ 192 (554)
|.+ |..|+|+.||.+.|-
T Consensus 139 t~~---------------G~~~~a~aVVlTTGT 156 (621)
T COG0445 139 TAD---------------GPEFHAKAVVLTTGT 156 (621)
T ss_pred ECC---------------CCEEECCEEEEEECC
T ss_conf 278---------------785106879996334
No 201
>PRK04965 nitric oxide reductase; Provisional
Probab=98.51 E-value=7.6e-06 Score=59.50 Aligned_cols=40 Identities=18% Similarity=0.346 Sum_probs=34.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 3647799989768999999999808997399997867789
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG 52 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG 52 (554)
|.=-|||||+|+||.++|..|.+++.+.+|.||++...+-
T Consensus 1 M~~~IVIIG~G~AG~~aa~~lR~~d~~~~Itvi~~e~~~~ 40 (378)
T PRK04965 1 MSNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE 40 (378)
T ss_pred CCCCEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCCC
T ss_conf 9899999988299999999997119498699998999988
No 202
>KOG0029 consensus
Probab=98.48 E-value=2.3e-07 Score=70.02 Aligned_cols=41 Identities=39% Similarity=0.622 Sum_probs=36.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC
Q ss_conf 3647799989768999999999808997399997867789864
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI 55 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i 55 (554)
...+|||||||+||++||..|.+.| ++|+|||....+|.+|
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G--~~V~VLEARdRvGGRI 54 (501)
T KOG0029 14 KKKKVIVIGAGLAGLSAARQLQDFG--FDVLVLEARDRVGGRI 54 (501)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCEE
T ss_conf 8883899898578999999999759--8259997147767647
No 203
>KOG2844 consensus
Probab=98.48 E-value=6.6e-07 Score=66.90 Aligned_cols=167 Identities=17% Similarity=0.226 Sum_probs=92.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCE-EEEEECCCCC-CCCCCCCCEECH-----HH-----------HHHH------C
Q ss_conf 477999897689999999998089973-9999786778-986402740333-----67-----------8886------7
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLS-VVILEKSAEV-GAHILSGAIIDP-----IG-----------IDSL------L 70 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~-VlvlEK~~~p-G~~i~sG~vl~p-----~a-----------L~eL------~ 70 (554)
-||||||+|-+|+++|++||++|. + ++|+||...- |+-=++.+.++. .. +.+| -
T Consensus 40 A~vvViggG~~g~~~~yhlak~g~--k~avlle~~~ltsgttwhtagl~~~lr~~dv~~qlia~~~~~l~~~leeEtgl~ 117 (856)
T KOG2844 40 ADVVVIGGGSLGCSTAYHLAKRGM--KGAVLLERSRLTSGTTWHTAGLLWQLFPSDVELQLIAHTSRVLYRELEEETGLH 117 (856)
T ss_pred CCEEEECCCCHHHHHHHHHHHCCC--CCEEEEEEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 557998578504789999997146--524787641103665633301032036896039998878899999999861997
Q ss_pred CCHHHHCCCCCCC---------------EEEEEEEEEECCCCCE-ECCCCCCCC---CCCCCCCEEEEHHHHHHHHHHHH
Q ss_conf 8726414885432---------------2436699997799767-736543565---44678826888889899999999
Q gi|254781024|r 71 PRWREDKGHPFHT---------------VVKRDLYWFLNAQRSI-QIPHFCLPD---FMDNKEHYIVSLGQVCRWLKNKA 131 (554)
Q Consensus 71 Pd~~e~~g~pl~~---------------~v~~d~~~~l~~~~~~-~~p~~~~p~---~~~~~g~yiv~r~~fd~~L~~~A 131 (554)
+.|++.-+..+.+ .+-..+..+|++..-. .+|....-. .+-+-+--+.+-..+|+.|+..|
T Consensus 118 tGwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~~DP~~lC~ala~~A 197 (856)
T KOG2844 118 TGWIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLYSPGDGVMDPAGLCQALARAA 197 (856)
T ss_pred CCEECCCCEEEECCHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCCCHHHHEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 63242781687047778999999997643315310553899998867565666740120358876448899999999999
Q ss_pred HHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHH
Q ss_conf 874953306822434776277620145412432443466578756302677425786066443255421
Q gi|254781024|r 132 EALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQL 200 (554)
Q Consensus 132 e~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l 200 (554)
.+.||.|+..+.|+++.. +++...+|.|... .+++.++|.|.|...+.-..+
T Consensus 198 ~~~GA~viE~cpV~~i~~-~~~~~~gVeT~~G----------------~iet~~~VNaaGvWAr~Vg~m 249 (856)
T KOG2844 198 SALGALVIENCPVTGLHV-ETDKFGGVETPHG----------------SIETECVVNAAGVWAREVGAM 249 (856)
T ss_pred HHCCCEEEECCCCCEEEE-ECCCCCCEECCCC----------------CEECCEEEECHHHHHHHHHHH
T ss_conf 853847981487425775-0377554304676----------------444352785222779876563
No 204
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.41 E-value=4.2e-06 Score=61.32 Aligned_cols=160 Identities=22% Similarity=0.284 Sum_probs=97.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC-C-CCCCCCE---ECH------HHHHHH---------------
Q ss_conf 7799989768999999999808997399997867789-8-6402740---333------678886---------------
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG-A-HILSGAI---IDP------IGIDSL--------------- 69 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG-~-~i~sG~v---l~p------~aL~eL--------------- 69 (554)
||+|||+|-|||++|+.|++. ++|+||-|+.... + ..-.|++ +.+ +..|.|
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~---~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~i 85 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS---FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFI 85 (518)
T ss_pred CEEEECCCHHHHHHHHHCCCC---CCEEEEECCCCCCCCCHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 589988759999999737777---84799957778876236543755766179998788888899854777869999999
Q ss_pred C---C---CHHHHCCCCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH-CCCEECCCC
Q ss_conf 7---8---72641488543224366999977997677365435654467882688888989999999987-495330682
Q gi|254781024|r 70 L---P---RWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEA-LGVEIYCGF 142 (554)
Q Consensus 70 ~---P---d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~-~Gvei~~g~ 142 (554)
. | +|....|.|+.+... ..+.|+-.++-+-+ +-.+-.+ -.-...-+.|.+++.+ -+++++.+.
T Consensus 86 v~~~~~ai~~Li~~Gv~FDr~~~--g~~~lt~EggHS~r-----RIlH~~~---~TG~~I~~~L~~~v~~~p~I~v~e~~ 155 (518)
T COG0029 86 VSEAPEAIEWLIDLGVPFDRDED--GRLHLTREGGHSRR-----RILHAAD---ATGKEIMTALLKKVRNRPNITVLEGA 155 (518)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCC--CCEEEEEECCCCCC-----EEEEECC---CCCHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 98689999999973987767888--74544310135775-----5788568---76089999999998448995898662
Q ss_pred EEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHH
Q ss_conf 243477627762014541243244346657875630267742578606644325542
Q gi|254781024|r 143 TATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQ 199 (554)
Q Consensus 143 ~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~ 199 (554)
.+.+++.+++..+.|+.+.+.+. +-..|+|+.||+|.|--|.|=+.
T Consensus 156 ~a~~li~~~~~~~~Gv~~~~~~~-----------~~~~~~a~~vVLATGG~g~ly~~ 201 (518)
T COG0029 156 EALDLIIEDGIGVAGVLVLNRNG-----------ELGTFRAKAVVLATGGLGGLYAY 201 (518)
T ss_pred HHHHHHHCCCCEEEEEEEECCCC-----------EEEEEECCEEEEECCCCCCCCCC
T ss_conf 23666024783476799964898-----------17997268489924887631246
No 205
>KOG1335 consensus
Probab=98.38 E-value=9.7e-07 Score=65.74 Aligned_cols=39 Identities=44% Similarity=0.793 Sum_probs=34.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 36477999897689999999998089973999978677898
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGA 53 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~ 53 (554)
-||||+|||+||.|-.||++.+|+| ++.+.+||....|.
T Consensus 38 ~~~DvvvIG~GpGGyvAAikAaQlG--lkTacvEkr~~LGG 76 (506)
T KOG1335 38 NDYDVVVIGGGPGGYVAAIKAAQLG--LKTACVEKRGTLGG 76 (506)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHC--CEEEEEECCCCCCC
T ss_conf 6678899877872589999998715--41688731575365
No 206
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.38 E-value=2.8e-06 Score=62.54 Aligned_cols=52 Identities=25% Similarity=0.492 Sum_probs=43.9
Q ss_pred HCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCC
Q ss_conf 10364779998976899999999980899739999786778986402740333678886787
Q gi|254781024|r 11 DVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPR 72 (554)
Q Consensus 11 e~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd 72 (554)
..|.-+|+|||||+||++||+.||..| ++|.|+||.+++|.+ ..-|+++||.
T Consensus 121 ~~v~~svLVIGGGvAGitAAl~La~~G--~~v~LVEKepsiGGr--------mak~~k~FP~ 172 (622)
T COG1148 121 VEVSKSVLVIGGGVAGITAALELADMG--FKVYLVEKEPSIGGR--------MAKLNKTFPT 172 (622)
T ss_pred HHHCCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCC--------HHHHHCCCCC
T ss_conf 753053599868489899999999759--808999417864504--------7765230787
No 207
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.37 E-value=3e-06 Score=62.36 Aligned_cols=150 Identities=16% Similarity=0.225 Sum_probs=95.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEEE
Q ss_conf 64779998976899999999980899739999786778986402740333678886787264148854322436699997
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFL 93 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~l 93 (554)
.||+|.||.||+.++.|+.|...+- ++++.|||.....=|- |-.++... +.++--.|-+...
T Consensus 5 ~~DliGIG~GPfNL~LA~ll~e~~~-~~~lFLerkp~F~WHp--Gmllegst---------------lQv~FlkDLVTl~ 66 (436)
T COG3486 5 VLDLIGIGIGPFNLSLAALLEEHSG-LKSLFLERKPDFSWHP--GMLLEGST---------------LQVPFLKDLVTLV 66 (436)
T ss_pred CEEEEEECCCCHHHHHHHHHCCCCC-CCEEEEECCCCCCCCC--CCCCCCCC---------------CCCCCHHHHCCCC
T ss_conf 4026887048327899987350257-5257873478887678--75557864---------------4450056325535
Q ss_pred CCCCCEECCCCCCC----CCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEE--EEECCCCCCC
Q ss_conf 79976773654356----54467882688888989999999987495330682243477627762014--5412432443
Q gi|254781024|r 94 NAQRSIQIPHFCLP----DFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALG--ILTGEKGKNY 167 (554)
Q Consensus 94 ~~~~~~~~p~~~~p----~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvg--v~t~~~G~~k 167 (554)
+++..+++-+...- -.+-|.+++.++|.+|+.++.-.|... -.++.+..|+++-..+.+.+.. ++|..
T Consensus 67 ~PTs~ySFLNYL~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~----- 140 (436)
T COG3486 67 DPTSPYSFLNYLHEHGRLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTAN----- 140 (436)
T ss_pred CCCCCHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHC-CCCCCCCEECCCCCCCCCCEEEEEEECCC-----
T ss_conf 899830799999870657655420023555888999999998408-72336870122102477630589998278-----
Q ss_pred CCCCCCCCCCEEEEEEEEEEEECCCCCHHH
Q ss_conf 466578756302677425786066443255
Q gi|254781024|r 168 DGTQGKHYIAPMLLLSKYMLVGEGACGSLT 197 (554)
Q Consensus 168 ~~~~~~~~~~g~~i~Ak~vI~AdG~~s~la 197 (554)
+..++||-+|.+-|..-.+-
T Consensus 141 ----------~~~y~ar~lVlg~G~~P~IP 160 (436)
T COG3486 141 ----------GTVYRARNLVLGVGTQPYIP 160 (436)
T ss_pred ----------CCEEEEEEEEECCCCCCCCC
T ss_conf ----------84788603798259976787
No 208
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase; InterPro: IPR004379 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=98.33 E-value=7.7e-07 Score=66.42 Aligned_cols=37 Identities=32% Similarity=0.600 Sum_probs=34.6
Q ss_pred CCCEEEECCCHHHHHHHH-HHHHCCCCCEEEEEECCCCCC
Q ss_conf 647799989768999999-999808997399997867789
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAI-RCKQINPHLSVVILEKSAEVG 52 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~-~La~~g~~l~VlvlEK~~~pG 52 (554)
.||.||||||-||+.+|. .|+|+|+ +||||||...+|
T Consensus 1 ~FdyiivGaGl~G~V~A~r~l~~lgk--~VLvvEkR~hiG 38 (390)
T TIGR00031 1 MFDYIIVGAGLSGIVLANRILAQLGK--RVLVVEKRNHIG 38 (390)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCC--EEEEEEECCCCC
T ss_conf 95179986636779999999997099--889997306658
No 209
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR011280 This entry represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes..
Probab=98.32 E-value=1.8e-05 Score=56.87 Aligned_cols=151 Identities=18% Similarity=0.176 Sum_probs=88.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC-CCCCCCC--CEECHH-------HHHHHCC---------------
Q ss_conf 79998976899999999980899739999786778-9864027--403336-------7888678---------------
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEV-GAHILSG--AIIDPI-------GIDSLLP--------------- 71 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~p-G~~i~sG--~vl~p~-------aL~eL~P--------------- 71 (554)
|||||+|-||++||+.|+++|. .|-.+==...| |+|-+|. ++=..+ ..=++|-
T Consensus 1 viVVGtGLaG~~A~~~lae~G~--~V~~F~~~d~prRaHSiaAQGGiN~A~n~k~dgD~~~~~f~DTvkGGDfr~res~v 78 (620)
T TIGR01811 1 VIVVGTGLAGGSAAAKLAELGY--HVKLFSYQDAPRRAHSIAAQGGINAAKNTKNDGDSVWRHFDDTVKGGDFRSRESNV 78 (620)
T ss_pred CEEECCCHHHHHHHHHHHHCCC--CEEEEEECCCCCCCEEHCCCCCCCCCCCCCCCCCCCEEEECCCEECCCCCCCCCHH
T ss_conf 9685565347899999986488--51254405887620000002662002565678884166531403235336777527
Q ss_pred -----------CHHHHCCCCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEH-------------HHHHHHH
Q ss_conf -----------7264148854322436699997799767736543565446788268888-------------8989999
Q gi|254781024|r 72 -----------RWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSL-------------GQVCRWL 127 (554)
Q Consensus 72 -----------d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r-------------~~fd~~L 127 (554)
|...-.|.|+.+.- .+.+. .+..|+-.++| --.+.-|
T Consensus 79 ~rla~~s~~iId~~~a~GvpFaRe~----------gGlLd---------~RsFGG~qvsRT~Yarg~TGQQLl~~~~~a~ 139 (620)
T TIGR01811 79 KRLAEISPEIIDLMDAMGVPFAREY----------GGLLD---------TRSFGGVQVSRTFYARGQTGQQLLLAADSAL 139 (620)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCC----------CCCCC---------CCCCCCEEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 8998730899999864588434554----------66300---------1346860001213417762789999999999
Q ss_pred HHHHHHCCCEECCCCEEEEEEECCCC---CEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHH
Q ss_conf 99998749533068224347762776---201454124324434665787563026774257860664432554
Q gi|254781024|r 128 KNKAEALGVEIYCGFTATEIYYGKKG---EALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTR 198 (554)
Q Consensus 128 ~~~Ae~~Gvei~~g~~v~~i~~~e~g---~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak 198 (554)
.++-..=-|++|.+..+.++++.+++ +.-|+..++.-. .. =..+.|+.||.|.|-.|.|--
T Consensus 140 ~r~~~~G~v~~y~~~e~ld~iv~d~~gek~arGi~arnL~T-------ge---~~~~~adAVilAtGGyg~vF~ 203 (620)
T TIGR01811 140 RRQIAAGTVEKYERWEMLDIIVVDGDGEKRARGIIARNLVT-------GE---IETFSADAVILATGGYGNVFY 203 (620)
T ss_pred HHHHHCCCEEEEECCEEEEEEEECCCCCCEEEEEEECCCCC-------CH---HHCCCCCEEEEECCCCHHHHH
T ss_conf 88886273566416516889887588750220012102400-------00---000035668981288602222
No 210
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.31 E-value=1.2e-05 Score=58.14 Aligned_cols=38 Identities=21% Similarity=0.491 Sum_probs=34.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 77999897689999999998089973999978677898
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGA 53 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~ 53 (554)
.|||||||+||.+||..|+|++++.+|.|+||...+-.
T Consensus 3 kiVIIG~g~AG~~aA~~lrk~~~~~eItvi~~e~~~~y 40 (438)
T PRK13512 3 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSF 40 (438)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 09998984999999999994391999999968998887
No 211
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.31 E-value=8.3e-07 Score=66.21 Aligned_cols=37 Identities=43% Similarity=0.633 Sum_probs=32.7
Q ss_pred HCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 103647799989768999999999808997399997867
Q gi|254781024|r 11 DVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 11 e~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
-.++||+||||+|.||++.|.+|++ ++++|+|||.+.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~--~g~~VllLEaG~ 40 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSD--AGLSVLVLEAGG 40 (542)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHHC--CCCEEEEEECCC
T ss_conf 5688998998987136899999857--998289995788
No 212
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.26 E-value=1.5e-06 Score=64.39 Aligned_cols=41 Identities=37% Similarity=0.643 Sum_probs=37.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 79998976899999999980899739999786778986402
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILS 57 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~s 57 (554)
|+|||||.|||+||++|+|++++..|.|+||+..+|..+.|
T Consensus 3 i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T 43 (444)
T COG1232 3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRT 43 (444)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEE
T ss_conf 99987828889999999985899867998348877865899
No 213
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.24 E-value=1.9e-06 Score=63.75 Aligned_cols=75 Identities=23% Similarity=0.151 Sum_probs=49.0
Q ss_pred EECCCCEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 63035134005421248742308879961232331366435226899999999999999874588653036789986420
Q gi|254781024|r 300 RLEYGARVISEGGWQSVPKLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEIEDSWRQT 379 (554)
Q Consensus 300 ~~~yga~~ip~gg~~s~pk~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~~Ye~~~~~s 379 (554)
.-.+|.-.+.+... +..-+|+..-||+.- -+.=+-.||-.|+-||+.|...+ ++ .+.+.+.+..+.
T Consensus 575 ~~k~G~I~vd~~t~----~Ts~~gVfAGGD~vr-----G~aTVIlAmgdG~~AAkei~~~~---~~--~~~e~~~~v~~a 640 (944)
T PRK12779 575 TNKWGTIEVEAGSQ----RTSIKDVYSGGDAAR-----GGSTAIRAAGDGQAAAKEIVGEI---PF--TPAEIKTRVERA 640 (944)
T ss_pred CCCCCEEEECCCCC----CCCCCCEEECCCCCC-----CHHHHHHHHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHH
T ss_conf 16785199885557----667777763355024-----56789887554599999985469---99--989999999999
Q ss_pred HHHHHHHHH
Q ss_conf 466788874
Q gi|254781024|r 380 QIGKDLWII 388 (554)
Q Consensus 380 ~~~~el~~~ 388 (554)
|-|.|+-.+
T Consensus 641 ~~yt~~~~~ 649 (944)
T PRK12779 641 ARYTELGQI 649 (944)
T ss_pred HHHHHHCCC
T ss_conf 876663026
No 214
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.19 E-value=1.9e-05 Score=56.76 Aligned_cols=174 Identities=18% Similarity=0.260 Sum_probs=96.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC-----C-----CCC------------EEC-HHH--HHH
Q ss_conf 647799989768999999999808997399997867789864-----0-----274------------033-367--888
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI-----L-----SGA------------IID-PIG--IDS 68 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i-----~-----sG~------------vl~-p~a--L~e 68 (554)
.||||+||||-.+++.|..|+++....+|+|+||-..++.-. - ||. .++ .+| ++|
T Consensus 6 ~~DVvLIGaGIMsaTL~~lL~el~P~~~I~l~Erl~~~A~ESS~~wNNAGTGHaa~CElNYTp~~~dg~i~i~KA~~Ine 85 (497)
T PRK13339 6 SKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSNERNNAGTGHAALCELNYTVQQADGSIDIKKAKEINE 85 (497)
T ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEHHHHHHHHH
T ss_conf 77889989528899999999976998748999814754544078866552210010220488765698241799999999
Q ss_pred H----------------CCCHHHHC-CCCCCCEEEE-EEEEEEC-------CC-----CCEE-----CCCCCCCCCCC--
Q ss_conf 6----------------78726414-8854322436-6999977-------99-----7677-----36543565446--
Q gi|254781024|r 69 L----------------LPRWREDK-GHPFHTVVKR-DLYWFLN-------AQ-----RSIQ-----IPHFCLPDFMD-- 111 (554)
Q Consensus 69 L----------------~Pd~~e~~-g~pl~~~v~~-d~~~~l~-------~~-----~~~~-----~p~~~~p~~~~-- 111 (554)
- +++-++.. ..|--..|.. +.+.||. .. -.++ +-. ..|..|.
T Consensus 86 qFe~S~QfWs~lv~~g~l~~p~~FI~~~PHmSfV~Ge~nv~fLrkRyeal~~~~lF~~MefseD~~~i~~-w~PLvm~gR 164 (497)
T PRK13339 86 QFEISKQFWGHLVKKGTIGNPREFINPLPHISFVRGKNNVKFLKKRFEALKQHPMFDNIEYTEDIEVMAK-WMPLMMPGR 164 (497)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHH-HCCEEECCC
T ss_conf 9999999999998657879857873779824675675888999999998734878777686059899975-377522698
Q ss_pred ----------CCCCEEEEHHHHHHHHHHHHHHC-CCEECCCCEEEEEEECCCC-CEEEEEECCCCCCCCCCCCCCCCCEE
Q ss_conf ----------78826888889899999999874-9533068224347762776-20145412432443466578756302
Q gi|254781024|r 112 ----------NKEHYIVSLGQVCRWLKNKAEAL-GVEIYCGFTATEIYYGKKG-EALGILTGEKGKNYDGTQGKHYIAPM 179 (554)
Q Consensus 112 ----------~~g~yiv~r~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~e~g-~vvgv~t~~~G~~k~~~~~~~~~~g~ 179 (554)
...+.-|+-+.+-+-|.+.++.. |++++.++.|+++....|| ..+.++....|. ..
T Consensus 165 ~~~e~vAAtr~~~GTDVdFGaLTr~l~~~l~~~~~~~v~~~~eV~~i~r~~dg~w~v~v~~~~~~~------------~~ 232 (497)
T PRK13339 165 EADEIMAASKIDEGTDVNFGALTRKMAKSLEAHPNAQVQYNHEVVDLERLSDGGWEVTVKDRNTGG------------KR 232 (497)
T ss_pred CCCCCEEEEECCCCEEECHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCEEEEEEECCCCC------------EE
T ss_conf 978855588257853401899999999999748983999478863217789998899999657897------------59
Q ss_pred EEEEEEEEEECCCCC-HHHHHH
Q ss_conf 677425786066443-255421
Q gi|254781024|r 180 LLLSKYMLVGEGACG-SLTRQL 200 (554)
Q Consensus 180 ~i~Ak~vI~AdG~~s-~lak~l 200 (554)
+++|++|...-|..+ .|.++.
T Consensus 233 ~~~A~fVFvGAGG~sL~LLQks 254 (497)
T PRK13339 233 EQVADYVFIGAGGGAIPLLQKS 254 (497)
T ss_pred EEEECEEEECCCHHHHHHHHHC
T ss_conf 9993679988873778999984
No 215
>TIGR02730 carot_isom carotene isomerase; InterPro: IPR014101 Members of this family, including sll0033 (crtH) of Synechocystis sp. (strain PCC 6803), catalyse a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization..
Probab=98.19 E-value=5.2e-05 Score=53.71 Aligned_cols=213 Identities=20% Similarity=0.284 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECC--------
Q ss_conf 889899999999874953306822434776277620145412432443466578756302677425786066--------
Q gi|254781024|r 120 LGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEG-------- 191 (554)
Q Consensus 120 r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG-------- 191 (554)
.++.-+-|++--++.|.+|+...+|+.|+. |++..|||+..+ |..++||-+|----
T Consensus 228 VG~IA~~Lv~GLe~~Gg~I~Y~A~Vt~ii~-e~~~AvGV~L~~---------------G~~~~~k~ivSNATRWDTF~g~ 291 (506)
T TIGR02730 228 VGQIAEKLVKGLEKHGGKIRYKARVTKIIL-ENGKAVGVKLAD---------------GEKIYAKRIVSNATRWDTFGGQ 291 (506)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEEEEEE-CCCCEEEEEECC---------------CCEEECCEEEECCCCCCCCCCC
T ss_conf 548999999888741640563002455452-088455568648---------------8365211676316423456776
Q ss_pred --CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH----------CCCCCCCCEEE-EEE---CCCCCCCCCCCEEEE-
Q ss_conf --4432554211224899888898998898888751----------65667888089-950---434768766412576-
Q gi|254781024|r 192 --ACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKI----------KPQYHRRGLAL-HSI---GWPLDMNTSGGGFVY- 254 (554)
Q Consensus 192 --~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei----------~~~~~~~G~~~-h~~---g~~~~~~~~gggwiy- 254 (554)
......++|.....+.+ .-...-|.+... ..+...+|..- |.+ -|.--....|--|+-
T Consensus 292 ~~g~~~~g~~L~~~~~~P~-----~E~~w~~~Y~~sPSFLSlHlGV~~d~lP~gT~CHH~~LEDdW~~l~~~~G~iFvSi 366 (506)
T TIGR02730 292 DDGSTRAGQKLLKEENLPK-----KEKKWRRNYVKSPSFLSLHLGVKADVLPEGTECHHILLEDDWDNLEKEQGTIFVSI 366 (506)
T ss_pred CCCHHHHHHHHHCCCCCCH-----HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCHHHCCCCCCEEEEEC
T ss_conf 4311356676420025863-----47899985137886033000420014788896137885267020067886699972
Q ss_pred -EC-CCCEEEEEE-EE---------------CCCCCC-CCCCHHHHHHHHHH--CCCHHHHHC---CCCEE---CC----
Q ss_conf -64-798059999-83---------------266656-68898899999860--800456503---88263---03----
Q gi|254781024|r 255 -HF-DDNLVSIGF-VL---------------HLDYRN-PWISAYEELQRFKT--HPDIRIIFT---EGERL---EY---- 303 (554)
Q Consensus 255 -~~-~d~~~~iG~-v~---------------~ld~~~-~~~~~~~~lq~fk~--hp~i~~~l~---gg~~~---~y---- 303 (554)
++ +.+++--|+ ++ ..||.. +........+|+.. -|-+..-+. -|+.. +|
T Consensus 367 PtlLDp~LAP~G~HI~H~FTps~~e~W~gLSp~dY~AKKE~~a~r~I~RLE~~ifPGL~~~~~~~EvGTPr~HRRfLgR~ 446 (506)
T TIGR02730 367 PTLLDPSLAPEGYHIIHTFTPSSLEDWQGLSPKDYEAKKEADAERLIDRLEKTIFPGLDEALDYKEVGTPRTHRRFLGRE 446 (506)
T ss_pred CCCCCCCCCCCCCEEEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHCCCC
T ss_conf 22027302779847998506202655317884243323177899999987664065602415433247886202212568
Q ss_pred --CCEECCCCCC---CCCC--CCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf --5134005421---2487--42308879961232331366435226899999999999999
Q gi|254781024|r 304 --GARVISEGGW---QSVP--KLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVE 358 (554)
Q Consensus 304 --ga~~ip~gg~---~s~p--k~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~e 358 (554)
.-+.||.... -+|| ++.-+|+-=|||+. | =|.|+.---.||..+|--|+.
T Consensus 447 ~GtYGPiPr~~l~GLL~MPFN~Tai~gLYCVGDS~-F----PGQGl~AVAFSG~~CAHR~a~ 503 (506)
T TIGR02730 447 SGTYGPIPRRKLKGLLPMPFNRTAIPGLYCVGDSC-F----PGQGLNAVAFSGFACAHRVAA 503 (506)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC-C----CCCCHHHHHHHHHHHHHHHHH
T ss_conf 78858888777887765885100357615504657-8----875336766621455565541
No 216
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD; InterPro: IPR014104 Members of this family are encoded by slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. (strain PCC 6803), and close homologues (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyses the first step that is committed to myxoxanthophyll..
Probab=98.18 E-value=2.3e-06 Score=63.18 Aligned_cols=71 Identities=11% Similarity=-0.009 Sum_probs=46.2
Q ss_pred EEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHH
Q ss_conf 88889899999999874953306822434776277620145412432443466578756302677425786066443255
Q gi|254781024|r 118 VSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLT 197 (554)
Q Consensus 118 v~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~la 197 (554)
=|.-.+-..|.+.-+..|.+|+.+-+|++|...++... ++...+.- .+.-+.+.|+-||.-==+.+-+
T Consensus 229 GSMQ~LSD~L~~al~~~GG~l~~gqrV~~I~~~~~~~~-~~~v~~~r----------~~~~~~~~A~d~V~~lPpq~LL- 296 (499)
T TIGR02733 229 GSMQVLSDRLVEALKRDGGRLLTGQRVTAIETKGGRAG-WVVVVDSR----------KQEDEQVKADDVVANLPPQSLL- 296 (499)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCEE-EEEEEECC----------CHHHHHHHHHCCEEECCHHHHH-
T ss_conf 20235789999999867987986002323443168415-68874164----------1146774420312007741168-
Q ss_pred HHH
Q ss_conf 421
Q gi|254781024|r 198 RQL 200 (554)
Q Consensus 198 k~l 200 (554)
+.+
T Consensus 297 ~l~ 299 (499)
T TIGR02733 297 ELL 299 (499)
T ss_pred HHC
T ss_conf 766
No 217
>pfam08491 SE Squalene epoxidase. This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway. Putative transmembrane regions are found to the protein's C-terminus.
Probab=98.17 E-value=1.6e-05 Score=57.28 Aligned_cols=154 Identities=16% Similarity=0.114 Sum_probs=84.2
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCEEE
Q ss_conf 42578606644325542112248998888989988988887516566788808995043476876641257664798059
Q gi|254781024|r 183 SKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMNTSGGGFVYHFDDNLVS 262 (554)
Q Consensus 183 Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~~~gggwiy~~~d~~~~ 262 (554)
|..||.|||+.|.++|++.... ...+. +-+|.. + .+.....+++..-..+- .+-.-+|+...+.+.
T Consensus 2 ApLtvv~DG~~S~fRk~l~~~~----~~v~S-~FvGl~-l--~~~~lp~p~hGhViL~~------~~PvL~YqIs~~etR 67 (276)
T pfam08491 2 APLTIVCDGCFSKFRKSLSDNK----VEVGS-YFVGLI-L--KNADLPAPNHGHVILGK------PSPILLYQISSTETR 67 (276)
T ss_pred CCEEEEECCCCHHHHHHHCCCC----CCEEE-EEEEEE-E--CCCCCCCCCCEEEEECC------CCCEEEEECCCCCEE
T ss_conf 9869981685058788734899----96301-689999-7--17889998804899669------986899972898368
Q ss_pred EEEEECCCCC-CCCC---CHHHHHHHHH-------HCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 9998326665-6688---9889999986-------080045650388263035134005421248742308879961232
Q gi|254781024|r 263 IGFVLHLDYR-NPWI---SAYEELQRFK-------THPDIRIIFTEGERLEYGARVISEGGWQSVPKLSFPGGSLIGCAA 331 (554)
Q Consensus 263 iG~v~~ld~~-~~~~---~~~~~lq~fk-------~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~g~lLvGDAA 331 (554)
+= ++.... -|.. +....+.... -++.+.+.++.++.+.--...+| +. ....+|++|+|||.
T Consensus 68 ~L--vdv~~~~lPs~~ng~~~~yl~~~v~P~lP~~lr~~f~~Al~~g~iRsMPn~~lp-----~~-~~~~~G~illGDA~ 139 (276)
T pfam08491 68 IL--CDYPGPKLPSIANGELKEYLKTSVAPQIPKELRPSFLAALDEGKIRSMPNSFLP-----AS-KNRKKGLILLGDAL 139 (276)
T ss_pred EE--EECCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC-----CC-CCCCCCEEEEEHHH
T ss_conf 99--953788899866416899999714667988899999999965992447502188-----87-67998789971110
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 331366435226899999999999999
Q gi|254781024|r 332 GFVNLLRIKGSHNAIISGMLAAEKIVE 358 (554)
Q Consensus 332 G~vnP~~g~GI~~Am~SG~lAAEai~e 358 (554)
.+-+|+||+|+..|.....+.++.+..
T Consensus 140 NmRHPLTGgGMTVal~Dvv~L~~lL~~ 166 (276)
T pfam08491 140 NMRHPLTGGGMTVALNDIVLLRKLLGP 166 (276)
T ss_pred CCCCCCCCCCEEEEHHHHHHHHHHCCC
T ss_conf 588985576667642089999986377
No 218
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.17 E-value=3.7e-06 Score=61.65 Aligned_cols=53 Identities=32% Similarity=0.473 Sum_probs=37.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC-CCCCCCCCCCEECHHHH
Q ss_conf 03647799989768999999999808997399997867-78986402740333678
Q gi|254781024|r 12 VFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA-EVGAHILSGAIIDPIGI 66 (554)
Q Consensus 12 ~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~-~pG~~i~sG~vl~p~aL 66 (554)
.-|||++||||||.|=.||++.+|+| |+|+++|... ..|.--|==+++.++||
T Consensus 121 ~~eYDlvIIG~G~GGy~AAi~Aaq~G--LKvaiiegekd~lGGTClNrGCIPSKAL 174 (673)
T PTZ00153 121 AEEYDLAIIGCGVGGHAAAINAMERG--LKVIIFAGDEDCIGGTCVNVGCIPSKAL 174 (673)
T ss_pred HHHCCEEEECCCCCHHHHHHHHHHCC--CEEEEEECCCCCCCCEEECCCCHHHHHH
T ss_conf 43579899998762899999999849--8699993687874772427773211999
No 219
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.16 E-value=0.00013 Score=50.87 Aligned_cols=220 Identities=17% Similarity=0.204 Sum_probs=105.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC-------CEE---CH--H------HHHHHCCCH
Q ss_conf 03647799989768999999999808997399997867789864027-------403---33--6------788867872
Q gi|254781024|r 12 VFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSG-------AII---DP--I------GIDSLLPRW 73 (554)
Q Consensus 12 ~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG-------~vl---~p--~------aL~eL~Pd~ 73 (554)
..++||||||||-||+.||..||.+| .+|++||...+- ++.| +++ +| + .++--.-||
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG--~~V~ildQEgeq---nlGGQAfWSfGGLF~vdSPEQRRlgirDsldLArqDW 77 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAG--KRVLILDQEGEQ---NLGGQAFWSFGGLFLVDSPEQRRLGIRDSLDLARQDW 77 (552)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC--CEEEEECCCCCC---CCCCEEEEECCCEEEECCHHHHHCCCCHHHHHHHHHH
T ss_conf 66442799875279889999887267--659997055545---6565134312637884687882215520477887754
Q ss_pred HHHCCCCCCCEE---------------EEEEEEEECCCC--CEECCC-------------CCCCCCCCCCCCEEEEHHHH
Q ss_conf 641488543224---------------366999977997--677365-------------43565446788268888898
Q gi|254781024|r 74 REDKGHPFHTVV---------------KRDLYWFLNAQR--SIQIPH-------------FCLPDFMDNKEHYIVSLGQV 123 (554)
Q Consensus 74 ~e~~g~pl~~~v---------------~~d~~~~l~~~~--~~~~p~-------------~~~p~~~~~~g~yiv~r~~f 123 (554)
.-.. -+.++- ..++-.+|...+ -|.+-. ...|++.-.-|.=---+.-|
T Consensus 78 ~gtA--~FDRPEDhWPr~WAeAYl~FAAGEkR~WL~~~GmrwFPvVGWAERGG~~A~ghGNSVPRFHiTWGTGPgvl~pF 155 (552)
T COG3573 78 FGTA--AFDRPEDHWPRQWAEAYLDFAAGEKRSWLHRRGMRWFPVVGWAERGGSDAQGHGNSVPRFHITWGTGPGVLEPF 155 (552)
T ss_pred HCCC--CCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCEEEEECCCHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHH
T ss_conf 3012--46884000537899998766415315789972871431012042077666788887763587616886436599
Q ss_pred HHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCC--CCCCCCCC-CCCCCEEEEEEEEEEEECCCCCHHHHHH
Q ss_conf 99999999874953306822434776277620145412432--44346657-8756302677425786066443255421
Q gi|254781024|r 124 CRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKG--KNYDGTQG-KHYIAPMLLLSKYMLVGEGACGSLTRQL 200 (554)
Q Consensus 124 d~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G--~~k~~~~~-~~~~~g~~i~Ak~vI~AdG~~s~lak~l 200 (554)
.+.+.+....--+++.....|..+.. .+|++.||+-.... ....+.+. ....-..+|+|..||.++|--+---+.+
T Consensus 156 vr~~re~~~~~~v~f~~RHrV~~l~~-t~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SGGIGGnhelV 234 (552)
T COG3573 156 VRRLREAQRRGRVTFRFRHRVDGLTT-TGGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASGGIGGNHELV 234 (552)
T ss_pred HHHHHHHHHCCCEEEEEEEECCCEEE-ECCEEEEECCCCCCCCCCCCCCCCCCEEECCEEEEEEEEEEECCCCCCCHHHH
T ss_conf 99999987578338985401152685-38767610033217884456897643010325776205999458768888888
Q ss_pred HHHCC-CCCCCCHHHHHHHHHHHHH---------HCCCCCCCCEEEEEE
Q ss_conf 12248-9988889899889888875---------165667888089950
Q gi|254781024|r 201 IERYS-LMDGRQPQKFGLGIKELWK---------IKPQYHRRGLALHSI 239 (554)
Q Consensus 201 ~~~~~-l~~~~~p~~~~~gvke~~e---------i~~~~~~~G~~~h~~ 239 (554)
-...+ .|-+..|..+..|+..-.+ .-....++...||+.
T Consensus 235 RrnWP~eRlG~~Pe~m~~GVPaHVDGrmi~i~~~aGg~vIN~DRMWHYt 283 (552)
T COG3573 235 RRNWPTERLGRAPEQMLSGVPAHVDGRMIGIAVAAGGSVINPDRMWHYT 283 (552)
T ss_pred HHCCCHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHCCCEECCCCCEEHH
T ss_conf 7529565508975887628860136226778887078244653110132
No 220
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.13 E-value=5.2e-06 Score=60.67 Aligned_cols=36 Identities=31% Similarity=0.588 Sum_probs=32.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 36477999897689999999998089973999978677
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
|+|||+|||||-||++||++|+++|+ ++.++-++..
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk--~c~iv~~gQs 36 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGK--RCAIVNRGQS 36 (421)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC--CEEEEECCHH
T ss_conf 96307997672888899999996588--0799857701
No 221
>PRK09897 hypothetical protein; Provisional
Probab=98.10 E-value=2.9e-05 Score=55.45 Aligned_cols=143 Identities=17% Similarity=0.268 Sum_probs=81.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC--CCCCE----ECHHHHHHHCC------CHHHHCCCCCCCE
Q ss_conf 799989768999999999808997399997867789864--02740----33367888678------7264148854322
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI--LSGAI----IDPIGIDSLLP------RWREDKGHPFHTV 84 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i--~sG~v----l~p~aL~eL~P------d~~e~~g~pl~~~ 84 (554)
|.||||||.|+.+-.+|-+.+.+++|.|.||+...|..- -.++- +.-.+=+|+-| +|.+.. |.+
T Consensus 4 IAivG~GPtgiYt~~~Ll~~~~~~~I~ifE~~~~aG~GMPYs~e~ns~~mlaNIas~EIPpi~~t~~~WL~~q--~~~-- 79 (535)
T PRK09897 4 IAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQ--EAS-- 79 (535)
T ss_pred EEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHC--CHH--
T ss_conf 7996678624999999864699826999821566778998685445588875031055885135699998738--887--
Q ss_pred EEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHH-------HHHHHHHCC--CEECCCCEEEEEEECCCCCE
Q ss_conf 436699997799767736543565446788268888898999-------999998749--53306822434776277620
Q gi|254781024|r 85 VKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRW-------LKNKAEALG--VEIYCGFTATEIYYGKKGEA 155 (554)
Q Consensus 85 v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~-------L~~~Ae~~G--vei~~g~~v~~i~~~e~g~v 155 (554)
+|. .+.+. +..++ ..-++.|--|..+ |.++|...| ++|+.++.|+++....+|..
T Consensus 80 -------~L~---~~~id----~~~l~--~rqflPRiLlGeYl~~QF~~Lve~a~~~G~~i~Vh~~~~VtDi~~~~~gv~ 143 (535)
T PRK09897 80 -------HLQ---RYGVK----KETLH--DRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVM 143 (535)
T ss_pred -------HHH---HCCCC----HHHCC--CCCEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEECCCCEE
T ss_conf -------898---71998----32264--101004888889999999999999986596699975766676443699559
Q ss_pred EEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCH
Q ss_conf 1454124324434665787563026774257860664432
Q gi|254781024|r 156 LGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGS 195 (554)
Q Consensus 156 vgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~ 195 (554)
+-+.+. . .....+.+|.|.|-.=.
T Consensus 144 l~~~~~--~--------------~~~~FD~vVIaTGH~WP 167 (535)
T PRK09897 144 LATNQD--L--------------PSETFDLAVIATGHVWP 167 (535)
T ss_pred EEECCC--C--------------CCCCCEEEEEECCCCCC
T ss_conf 983378--8--------------76432079980798799
No 222
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.10 E-value=5.5e-06 Score=60.49 Aligned_cols=42 Identities=31% Similarity=0.584 Sum_probs=37.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC----CCEEEEEECCCCCCCCCCC
Q ss_conf 77999897689999999998089----9739999786778986402
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINP----HLSVVILEKSAEVGAHILS 57 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~----~l~VlvlEK~~~pG~~i~s 57 (554)
.|+|||||-+||+||++|.|+++ +++|.|+|+...+|.+|.+
T Consensus 3 ~vaVIGgGISGLsaA~~L~~~~~~~~~~~~vtl~Eas~r~GG~I~T 48 (466)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHS 48 (466)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEEE
T ss_conf 5999899789999999998725555899867999779988677989
No 223
>KOG2853 consensus
Probab=98.09 E-value=0.00048 Score=47.03 Aligned_cols=35 Identities=40% Similarity=0.616 Sum_probs=30.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHC--CCCCEEEEEECCC
Q ss_conf 4779998976899999999980--8997399997867
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQI--NPHLSVVILEKSA 49 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~--g~~l~VlvlEK~~ 49 (554)
.||+|||||-.|+|.|+.|+.. ..+++|+|+||..
T Consensus 87 ~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErdd 123 (509)
T KOG2853 87 CDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDD 123 (509)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 6789988886522658999887643794399996267
No 224
>TIGR00137 gid gid protein; InterPro: IPR004417 The gid proteins are present in relatively few bacteria but very tightly conserved where they occur. The function of these proteins is unknown. They are closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae..
Probab=98.09 E-value=9.4e-06 Score=58.88 Aligned_cols=109 Identities=20% Similarity=0.229 Sum_probs=63.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECC---CCCCCCC------CCCCEECHHHHHH---HCC-CHHHHCCCCCC
Q ss_conf 779998976899999999980899739999786---7789864------0274033367888---678-72641488543
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKS---AEVGAHI------LSGAIIDPIGIDS---LLP-RWREDKGHPFH 82 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~---~~pG~~i------~sG~vl~p~aL~e---L~P-d~~e~~g~pl~ 82 (554)
.|.|||||-||+=||++||+.| ++|.|.|-. ..|-.|. ||-..|-..+|+. ||- +.++....-++
T Consensus 2 ~v~VIGgGLAGsEAAWqlA~~G--~~ViLyEMRP~k~tPAH~t~~lAELVCSNslg~~~l~~aaGlLk~Emr~L~SliI~ 79 (444)
T TIGR00137 2 KVIVIGGGLAGSEAAWQLAKEG--VRVILYEMRPKKLTPAHHTEDLAELVCSNSLGAKELARAAGLLKEEMRKLDSLIIE 79 (444)
T ss_pred EEEEECCCCHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCCCEEEEECCHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 3689718853468999998489--72799753876577876666602232021011010120123689998863079998
Q ss_pred CEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCC-CEECCCCEEEEEE
Q ss_conf 22436699997799767736543565446788268888898999999998749-5330682243477
Q gi|254781024|r 83 TVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALG-VEIYCGFTATEIY 148 (554)
Q Consensus 83 ~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~G-vei~~g~~v~~i~ 148 (554)
.-...++|- .|+..|||..|-+.+-++.++.= |+++ .-.|+||-
T Consensus 80 ------------aAd~~~VPA---------GGALaVDR~iFs~s~Te~v~sHPnv~li-reEV~EIP 124 (444)
T TIGR00137 80 ------------AADEAAVPA---------GGALAVDRKIFSESVTEKVKSHPNVTLI-REEVTEIP 124 (444)
T ss_pred ------------HHHHCCCCC---------CCCCHHHHHHHHHHHHHHHHCCCCEEEE-CCCEEEEC
T ss_conf ------------765336898---------8520112789999887764128845887-16400515
No 225
>KOG2852 consensus
Probab=98.05 E-value=0.00056 Score=46.55 Aligned_cols=309 Identities=17% Similarity=0.161 Sum_probs=148.7
Q ss_pred HHCCCCCEEEECCCHHHHHHHHHHHHCC----CCCEEEEEECCCCCCCCCCCC---CEEC----H---HHH--------H
Q ss_conf 0103647799989768999999999808----997399997867789864027---4033----3---678--------8
Q gi|254781024|r 10 KDVFEYDVVIIGAGPAGLAAAIRCKQIN----PHLSVVILEKSAEVGAHILSG---AIID----P---IGI--------D 67 (554)
Q Consensus 10 re~meyDVvIVGaGPAG~saA~~La~~g----~~l~VlvlEK~~~pG~~i~sG---~vl~----p---~aL--------~ 67 (554)
|+.----|+|||||--|..+|++|++.+ -.+.|.++|+..-.|+- || +.|. | +.| +
T Consensus 6 r~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ga--SGkasgfLa~wc~~s~~~~La~lsfkLh~ 83 (380)
T KOG2852 6 REGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGA--SGKASGFLAKWCQPSIIQPLATLSFKLHE 83 (380)
T ss_pred CCCCCEEEEEECCCCEEEEEEHHHHCCCCCCCCCEEEEEEEECCCCCCC--CCCCCHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 5678307999888704664200344287667784159999603434355--66410456766378653223577788888
Q ss_pred HHCCCHHHHCCCCCCCEE-EEEEEEEECCC---C-CEEC---CCCCCCCCCCC-------CCCEEEEHHHHHHHHHHHHH
Q ss_conf 867872641488543224-36699997799---7-6773---65435654467-------88268888898999999998
Q gi|254781024|r 68 SLLPRWREDKGHPFHTVV-KRDLYWFLNAQ---R-SIQI---PHFCLPDFMDN-------KEHYIVSLGQVCRWLKNKAE 132 (554)
Q Consensus 68 eL~Pd~~e~~g~pl~~~v-~~d~~~~l~~~---~-~~~~---p~~~~p~~~~~-------~g~yiv~r~~fd~~L~~~Ae 132 (554)
|| -| |.+|. +..- ..-..|++..+ - --+. +.|..+..+++ ...-.|.-..|++.+++.|+
T Consensus 84 ~L-sd--eydGv--nnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~ 158 (380)
T KOG2852 84 EL-SD--EYDGV--NNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAE 158 (380)
T ss_pred HH-HH--HHCCC--CCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCCEECHHHHHHHHHHHHH
T ss_conf 77-77--62684--444522432799996024478666776525555677510001368775301178999999999988
Q ss_pred HCC-CEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 749-5330682243477627762014541243244346657875630267742578606644325542112248998888
Q gi|254781024|r 133 ALG-VEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQ 211 (554)
Q Consensus 133 ~~G-vei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~ 211 (554)
+.| |++..|. |.++- +|.+++.++... ++-.+.....+..+|.|-|+.++---..-.-.+++..
T Consensus 159 k~~~V~lv~Gk-v~ev~-dEk~r~n~v~~a-----------e~~~ti~~~d~~~ivvsaGPWTskllp~~rIsglrih-- 223 (380)
T KOG2852 159 KRGGVKLVFGK-VKEVS-DEKHRINSVPKA-----------EAEDTIIKADVHKIVVSAGPWTSKLLPFTRISGLRIH-- 223 (380)
T ss_pred HHCCEEEEEEE-EEEEE-CCCCCCCCCCHH-----------HHCCCEEEEEEEEEEEECCCCCHHHCCCCCCCEEEEE--
T ss_conf 62676899866-68863-244612154023-----------3048437834238999527873321456531114423--
Q ss_pred HHHHHHHHHHHHHHCCCCCC-CCEEEEEECCCCCCCCCCCEEEEECCCCEEEEEEEEC------CCCCCCCCCHHHHHHH
Q ss_conf 98998898888751656678-8808995043476876641257664798059999832------6665668898899999
Q gi|254781024|r 212 PQKFGLGIKELWKIKPQYHR-RGLALHSIGWPLDMNTSGGGFVYHFDDNLVSIGFVLH------LDYRNPWISAYEELQR 284 (554)
Q Consensus 212 p~~~~~gvke~~ei~~~~~~-~G~~~h~~g~~~~~~~~gggwiy~~~d~~~~iG~v~~------ld~~~~~~~~~~~lq~ 284 (554)
.+.+.+.... -+.+.....-........--=.|+.+|..+.|....+ .|..+...+| +..+.
T Consensus 224 ----------sI~l~~~e~~v~~~avf~~l~~~~g~ei~~pe~y~rkd~Evyicg~~~~e~~lPedsd~v~~np-eki~~ 292 (380)
T KOG2852 224 ----------SITLSPGEKPVGPSAVFCELNTMDGLEICKPEEYARKDREVYICGETDKEHLLPEDSDDVFVNP-EKIIE 292 (380)
T ss_pred ----------EEEECCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCCCCCEECH-HHHHH
T ss_conf ----------6895478877787069999886798533570025258863899647885455876424424378-99999
Q ss_pred HHH-CCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCCCEEEECCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 860-80045650388263035134005421248742308879961232331366---4352268999999999999998
Q gi|254781024|r 285 FKT-HPDIRIIFTEGERLEYGARVISEGGWQSVPKLSFPGGSLIGCAAGFVNLL---RIKGSHNAIISGMLAAEKIVER 359 (554)
Q Consensus 285 fk~-hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~g~lLvGDAAG~vnP~---~g~GI~~Am~SG~lAAEai~ea 359 (554)
+|+ -..+...+..+..+...+..+|....- |+=++|.--+-+-.. .-=||.+|=.+|.+.||.+++.
T Consensus 293 Lk~~a~~v~s~l~ks~v~~~qacfLP~sn~t--------g~PvIget~sg~yVaagHscWGItnaPaTG~~mAEllldg 363 (380)
T KOG2852 293 LKEMADLVSSELTKSNVLDAQACFLPTSNIT--------GIPVIGETKSGVYVAAGHSCWGITNAPATGKCMAELLLDG 363 (380)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCCCCCC--------CCCEEEECCCCEEEEECCCCCCEECCCCHHHHHHHHHHCC
T ss_conf 9999987656633223444340023333778--------8855753378569965564343005861457899987366
No 226
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.02 E-value=7.6e-05 Score=52.56 Aligned_cols=150 Identities=15% Similarity=0.188 Sum_probs=77.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCCCCCCCEECHHHHH-------HHCCCHHHHCCCCCCCEEE
Q ss_conf 47799989768999999999808997-399997867789864027403336788-------8678726414885432243
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHL-SVVILEKSAEVGAHILSGAIIDPIGID-------SLLPRWREDKGHPFHTVVK 86 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l-~VlvlEK~~~pG~~i~sG~vl~p~aL~-------eL~Pd~~e~~g~pl~~~v~ 86 (554)
++|+|||+|++|...|.+|.+.-..- +|.++|+....|..+--..-..-+.|| -.+||-
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~------------- 68 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDI------------- 68 (474)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC-------------
T ss_conf 5189978865799999999847887775678535554578755788882144216202354458998-------------
Q ss_pred EEEE-EEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHC---CC---EECCCCEEEEEEECCCCCEEEEE
Q ss_conf 6699-99779976773654356544678826888889899999999874---95---33068224347762776201454
Q gi|254781024|r 87 RDLY-WFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEAL---GV---EIYCGFTATEIYYGKKGEALGIL 159 (554)
Q Consensus 87 ~d~~-~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~---Gv---ei~~g~~v~~i~~~e~g~vvgv~ 159 (554)
.+.| .+|..+ +.....|..+.+.+..-..|..|..+|.++-... +- -.+....++.+..++++...-+.
T Consensus 69 p~~F~~WL~~~----~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~ 144 (474)
T COG4529 69 PQDFVRWLQKQ----LQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVT 144 (474)
T ss_pred CHHHHHHHHHC----CCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEECCCCCEEEEE
T ss_conf 16899999742----55657754437765346615699999999999999736764046776444301004577357896
Q ss_pred ECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHH
Q ss_conf 1243244346657875630267742578606644325
Q gi|254781024|r 160 TGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSL 196 (554)
Q Consensus 160 t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~l 196 (554)
+.+ |....|+.+|+|.|---..
T Consensus 145 ~~~---------------g~~~~ad~~Vlatgh~~~~ 166 (474)
T COG4529 145 TAD---------------GPSEIADIIVLATGHSAPP 166 (474)
T ss_pred CCC---------------CCEEEEEEEEEECCCCCCC
T ss_conf 588---------------8704501799943688997
No 227
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=8.2e-06 Score=59.30 Aligned_cols=40 Identities=38% Similarity=0.483 Sum_probs=36.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 799989768999999999808997399997867789864027
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSG 58 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG 58 (554)
|+|+|||-||++||+.|+.+| ++|.|+|.+.++|.|.-|.
T Consensus 3 Vai~GaG~AgL~~a~~La~~g--~~vt~~ea~~~~GGk~~s~ 42 (485)
T COG3349 3 VAIAGAGLAGLAAAYELADAG--YDVTLYEARDRLGGKVASW 42 (485)
T ss_pred EEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCEEEEE
T ss_conf 899746278889999998689--8539984267668613111
No 228
>TIGR02061 aprA adenylylsulfate reductase, alpha subunit; InterPro: IPR011803 During dissimilatory sulphate reduction or sulphur oxidation, adenylylsulphate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulphite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. This entry describes the alpha subunit of APS reductase, which shares a common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins..
Probab=98.00 E-value=4.3e-05 Score=54.27 Aligned_cols=390 Identities=19% Similarity=0.205 Sum_probs=182.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCC--CCCEEEEEECCCCCCCCCCCCCEECH-HHHHHHCC----CHHHHCCCCCCCEEEEE
Q ss_conf 7799989768999999999808--99739999786778986402740333-67888678----72641488543224366
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQIN--PHLSVVILEKSAEVGAHILSGAIIDP-IGIDSLLP----RWREDKGHPFHTVVKRD 88 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g--~~l~VlvlEK~~~pG~~i~sG~vl~p-~aL~eL~P----d~~e~~g~pl~~~v~~d 88 (554)
||+|||||-+|+-||.-.++=| ++|||+|+||..-=| ||+|=.- .|+|--+- .++|...-.--+.|+-|
T Consensus 1 D~LivGgG~ggcGaAfEA~yWg~~~GLKi~lveKA~~eR----SGAVAQGLsAINtY~g~~Grs~~eN~~eDyVRyvr~D 76 (651)
T TIGR02061 1 DVLIVGGGLGGCGAAFEAAYWGKKKGLKIVLVEKAAVER----SGAVAQGLSAINTYLGLRGRSERENDAEDYVRYVRLD 76 (651)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCC----CHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHCC
T ss_conf 947871785520278999987406883799961146542----2156766789886516776656688821103211000
Q ss_pred EEEEEC----------CCCCE-ECCCCCCCCCCCC-CCCEE---------------------------EEHHHHHHHHHH
Q ss_conf 999977----------99767-7365435654467-88268---------------------------888898999999
Q gi|254781024|r 89 LYWFLN----------AQRSI-QIPHFCLPDFMDN-KEHYI---------------------------VSLGQVCRWLKN 129 (554)
Q Consensus 89 ~~~~l~----------~~~~~-~~p~~~~p~~~~~-~g~yi---------------------------v~r~~fd~~L~~ 129 (554)
-+-+.- -+.++ .+..|.+|--... .|.|+ |.--..-.+.||
T Consensus 77 lMGlvREDL~fD~aRHVD~~VHlFE~WGLP~w~~p~dG~y~eGaaakvaGkslrkGdaPvReGrWQIMIhGESYKpIvAE 156 (651)
T TIGR02061 77 LMGLVREDLVFDVARHVDDAVHLFEEWGLPLWKKPKDGKYLEGAAAKVAGKSLRKGDAPVREGRWQIMIHGESYKPIVAE 156 (651)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHH
T ss_conf 12346788874120141751001221689633186888742311444420121037887237741587547666048999
Q ss_pred HHHH-CCC-E-ECCCCEEEEEEECCCC--CEE-----EEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHH--
Q ss_conf 9987-495-3-3068224347762776--201-----45412432443466578756302677425786066443255--
Q gi|254781024|r 130 KAEA-LGV-E-IYCGFTATEIYYGKKG--EAL-----GILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLT-- 197 (554)
Q Consensus 130 ~Ae~-~Gv-e-i~~g~~v~~i~~~e~g--~vv-----gv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~la-- 197 (554)
.|+. .|- + |+...-+.++|.|++. ++- .|+++.. -.|+|+-||.|.|-.+.|=
T Consensus 157 AAK~a~g~~~ni~eRifi~~LL~Dkn~PNriAGAVGFnvR~~~~---------------hvFKaktvivAaGGA~n~yrP 221 (651)
T TIGR02061 157 AAKKAVGKDRNIFERIFIVKLLLDKNKPNRIAGAVGFNVREGEY---------------HVFKAKTVIVAAGGASNVYRP 221 (651)
T ss_pred HHHHHCCCCCCCEEHEEEEEEECCCCCCCCEECCCEEEECCCCE---------------EEEECCEEEEECCCCCCCCCC
T ss_conf 98752275444110102110002688887122011001017865---------------698712456630661001357
Q ss_pred HHHHHHCCCCCC---CCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCEEEEEE---------
Q ss_conf 421122489988---88989988988887516566788808995043476876641257664798059999---------
Q gi|254781024|r 198 RQLIERYSLMDG---RQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMNTSGGGFVYHFDDNLVSIGF--------- 265 (554)
Q Consensus 198 k~l~~~~~l~~~---~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~~~gggwiy~~~d~~~~iG~--------- 265 (554)
|+.++-.+..+- ..=..|.++++.=-++..=.+ ..+..=|- --.++-|-.|++-+-..+.+.|-
T Consensus 222 RStGEgaGR~WYa~w~~GS~Y~m~~~aGA~mT~mEn--RfvpaRFK--DGYGPVGAwFL~fK~ka~N~~GEeY~~~~~a~ 297 (651)
T TIGR02061 222 RSTGEGAGRVWYAVWDAGSAYTMLLKAGAKMTQMEN--RFVPARFK--DGYGPVGAWFLFFKAKAKNALGEEYIKTRRAE 297 (651)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC--CCEEEEEC--CCCCCHHHHHHHHHHHCCCCCCCCHHHHCHHH
T ss_conf 624436775003645663578999986332432203--40220331--78887689998888630578861235513022
Q ss_pred ---EECCCCCCCCC------------------------------CHHHHHHHH---------HH--CCCHHHHHC-----
Q ss_conf ---83266656688------------------------------988999998---------60--800456503-----
Q gi|254781024|r 266 ---VLHLDYRNPWI------------------------------SAYEELQRF---------KT--HPDIRIIFT----- 296 (554)
Q Consensus 266 ---v~~ld~~~~~~------------------------------~~~~~lq~f---------k~--hp~i~~~l~----- 296 (554)
..+..|.+|.+ .-.+.||.. |+ .....++|.
T Consensus 298 L~~y~~~gya~p~~shrthrPIPTcLRNH~~~~E~~~GrgPIyM~T~eAlq~~~~~l~~~~~Khlee~awedFLdMtVgQ 377 (651)
T TIGR02061 298 LKEYKDKGYAKPELSHRTHRPIPTCLRNHALLREVREGRGPIYMDTKEALQDLAATLDKKKLKHLEEEAWEDFLDMTVGQ 377 (651)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 03557753458620245578887841446999999608798110538887525301033554336765445451012888
Q ss_pred --------------------------------------CC----CEECCCCEECCCCCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf --------------------------------------88----263035134005421248742308879961232331
Q gi|254781024|r 297 --------------------------------------EG----ERLEYGARVISEGGWQSVPKLSFPGGSLIGCAAGFV 334 (554)
Q Consensus 297 --------------------------------------gg----~~~~yga~~ip~gg~~s~pk~~~~g~lLvGDAAG~v 334 (554)
|. ..-+|-.+..+---|+.| ++..|+.-+||++|--
T Consensus 378 A~LWActn~dP~e~~sE~~p~EPY~mGSHsg~cG~WvsGPdEd~~PeeY~~~~~nG~~YNRM--TTVeGLF~~gD~vGa~ 455 (651)
T TIGR02061 378 AVLWACTNVDPKERNSELAPAEPYVMGSHSGECGIWVSGPDEDLVPEEYAVRAANGKKYNRM--TTVEGLFAIGDAVGAS 455 (651)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHCCCCCCCCCC--CCCHHHHHCCCCCCCC
T ss_conf 88887507887778787666677100522246762342775677870576415688612542--1201465301346888
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH--HHHHH
Q ss_conf 36643522689999999999999987458865--303678998642046678887422566887616046899--98999
Q gi|254781024|r 335 NLLRIKGSHNAIISGMLAAEKIVERLSNGKKH--DDPIEIEDSWRQTQIGKDLWIIRNIKPLLSRFGVFIGLS--LGLMD 410 (554)
Q Consensus 335 nP~~g~GI~~Am~SG~lAAEai~eal~~g~~~--~~l~~Ye~~~~~s~~~~el~~~rn~~~~~~~~g~~~g~~--~~~~~ 410 (554)
-=-+++|.|+ -|+|||++++.-+..|... ..-.+--+++|+. +|+=|++.+.+|...----.-+--+ -.++.
T Consensus 456 pHkFSSGSft---EGR~AaKaavr~ildG~k~~~~~~da~~Eelkk~-~Y~Pme~f~~yk~~sTa~~VNPnYI~P~qgl~ 531 (651)
T TIGR02061 456 PHKFSSGSFT---EGRLAAKAAVRYILDGKKEGKEVSDAVVEELKKE-VYKPMERFREYKDESTADSVNPNYILPKQGLV 531 (651)
T ss_pred CCCCCCCCCH---HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH-HCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf 8667766415---7889999997775336788885438899999998-51226788887652278887877447534556
Q ss_pred HHHHHHCCCCCCCCCCCCCCCHHHC
Q ss_conf 9885422656666567788896540
Q gi|254781024|r 411 IWIQKILGFSFLGTLKHHKMDSCSL 435 (554)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~d~~~~ 435 (554)
.||+++.-...+.-..+.+.-.-|
T Consensus 532 -RL~K~~DEY~gGv~t~Y~Tne~lL 555 (651)
T TIGR02061 532 -RLQKLMDEYAGGVATIYKTNEKLL 555 (651)
T ss_pred -HHHHHHHHCCCCEEEEEHHHHHHH
T ss_conf -765443210685046543038899
No 229
>KOG0404 consensus
Probab=97.98 E-value=5e-05 Score=53.82 Aligned_cols=115 Identities=23% Similarity=0.361 Sum_probs=71.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEEEC
Q ss_conf 47799989768999999999808997399997867789864027403336788867872641488543224366999977
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFLN 94 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~l~ 94 (554)
-.|+|||.|||+-+||++++++. ++-+|+|-...-+ |--|+-|.+..-=|-||.|
T Consensus 9 e~v~IiGSGPAa~tAAiYaarae--lkPllfEG~~~~~--i~pGGQLtTTT~veNfPGF--------------------- 63 (322)
T KOG0404 9 ENVVIIGSGPAAHTAAIYAARAE--LKPLLFEGMMANG--IAPGGQLTTTTDVENFPGF--------------------- 63 (322)
T ss_pred EEEEEECCCCHHHHHHHHHHHCC--CCCEEEEEEECCC--CCCCCEEEEEECCCCCCCC---------------------
T ss_conf 03899835806777899976502--6756881111168--6888634565201348999---------------------
Q ss_pred CCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 99767736543565446788268888898999999998749533068224347762776201454124324434665787
Q gi|254781024|r 95 AQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKH 174 (554)
Q Consensus 95 ~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~ 174 (554)
|+ -+.-..+-..+.+|++..|.+|++.+ |..+-+ .+..-.+.|.
T Consensus 64 ------------Pd--------gi~G~~l~d~mrkqs~r~Gt~i~tEt-Vskv~~--sskpF~l~td------------- 107 (322)
T KOG0404 64 ------------PD--------GITGPELMDKMRKQSERFGTEIITET-VSKVDL--SSKPFKLWTD------------- 107 (322)
T ss_pred ------------CC--------CCCCHHHHHHHHHHHHHHCCEEEEEE-HHHCCC--CCCCEEEEEC-------------
T ss_conf ------------75--------45668899999988875164654100-222223--6897698843-------------
Q ss_pred CCCEEEEEEEEEEEECCCC
Q ss_conf 5630267742578606644
Q gi|254781024|r 175 YIAPMLLLSKYMLVGEGAC 193 (554)
Q Consensus 175 ~~~g~~i~Ak~vI~AdG~~ 193 (554)
...++|+.+|.|.|+.
T Consensus 108 ---~~~v~~~avI~atGAs 123 (322)
T KOG0404 108 ---ARPVTADAVILATGAS 123 (322)
T ss_pred ---CCCEEEEEEEEECCCC
T ss_conf ---7724530699921630
No 230
>KOG2665 consensus
Probab=97.97 E-value=7.6e-05 Score=52.58 Aligned_cols=170 Identities=24% Similarity=0.358 Sum_probs=99.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC---CEE------CHHHHH--------HHCCCHHHH
Q ss_conf 647799989768999999999808997399997867789864027---403------336788--------867872641
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSG---AII------DPIGID--------SLLPRWRED 76 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG---~vl------~p~aL~--------eL~Pd~~e~ 76 (554)
.||.||||||--|++.|..|.-.-+.++|+||||...-+.| .|| +|+ .|..|. +|+=.|-+.
T Consensus 48 ~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~h-qSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~e 126 (453)
T KOG2665 48 RYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVH-QSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCDE 126 (453)
T ss_pred CCCEEEECCCEEEHHHHHHHHHCCCCCEEEEEEHHHHHCEE-ECCCCCCEEEEEEEECCCCCCHHHHHCCHHHHHHHHHH
T ss_conf 55479988843222556777631787257754000102155-12566650564344177660001103429999998524
Q ss_pred CCCCCCC------EEEEEEEEEE-------CCCC--CEECCC----C-CCC------CCCCCCCCEEEEHHHHHHHHHHH
Q ss_conf 4885432------2436699997-------7997--677365----4-356------54467882688888989999999
Q gi|254781024|r 77 KGHPFHT------VVKRDLYWFL-------NAQR--SIQIPH----F-CLP------DFMDNKEHYIVSLGQVCRWLKNK 130 (554)
Q Consensus 77 ~g~pl~~------~v~~d~~~~l-------~~~~--~~~~p~----~-~~p------~~~~~~g~yiv~r~~fd~~L~~~ 130 (554)
...|-.. .+..+.+--| +.++ .+++-. . ..| .....|.+ ||+-+.|-.-+++.
T Consensus 127 ~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtG-IvD~~~v~ls~~ed 205 (453)
T KOG2665 127 KKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTG-IVDWGSVTLSFGED 205 (453)
T ss_pred CCCCHHHCCEEEEEECHHHCCHHHHHHHHHHHCCCCCEEEECCCHHHHCCHHHHHHHHHCCCCCC-EEEHHHHHHHHHHH
T ss_conf 07973450638997172115038999976522599970653121133317355444654488766-04357899999888
Q ss_pred HHHCCCEECCCCEEEEEEECCCCC---EEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHH
Q ss_conf 987495330682243477627762---0145412432443466578756302677425786066443255421
Q gi|254781024|r 131 AEALGVEIYCGFTATEIYYGKKGE---ALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQL 200 (554)
Q Consensus 131 Ae~~Gvei~~g~~v~~i~~~e~g~---vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l 200 (554)
-+.+|-.++..+++..+-.+.++. .+.|.. .++.+++.+.+|-..|-.|..-..+
T Consensus 206 F~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~n---------------gk~ee~r~~~~vtc~gl~sdr~aa~ 263 (453)
T KOG2665 206 FDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLN---------------GKGEEKRTKNVVTCAGLQSDRCAAL 263 (453)
T ss_pred HHHHCCCCCCCCEECCCHHCCCCCCCCCEEEEC---------------CCCCEEEEEEEEEECCCCHHHHHHH
T ss_conf 987454121564101201036788888669945---------------8552257767887336337678897
No 231
>pfam06039 Mqo Malate:quinone oxidoreductase (Mqo). This family consists of several bacterial Malate:quinone oxidoreductase (Mqo) proteins (EC:1.1.99.16). Mqo takes part in the citric acid cycle. It oxidizes L-malate to oxaloacetate and donates electrons to ubiquinone-1 and other artificial acceptors or, via the electron transfer chain, to oxygen. NAD is not an acceptor and the natural direct acceptor for the enzyme is most likely a quinone. The enzyme is therefore called malate:quinone oxidoreductase, abbreviated to Mqo. Mqo is a peripheral membrane protein and can be released from the membrane by addition of chelators.
Probab=97.97 E-value=6.9e-05 Score=52.86 Aligned_cols=173 Identities=23% Similarity=0.359 Sum_probs=94.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC-----C-----CCCCE------------EC-HHH--HHH
Q ss_conf 64779998976899999999980899739999786778986-----4-----02740------------33-367--888
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAH-----I-----LSGAI------------ID-PIG--IDS 68 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~-----i-----~sG~v------------l~-p~a--L~e 68 (554)
+||||+||||-.|++.++.|+++....+|+|+||-..++.- + -||.+ ++ .+| ++|
T Consensus 4 ~~DVvlIGgGImsatL~~~L~~l~p~~~I~l~Erl~~~A~eSS~~wNNAgTgHaa~cElNYTpe~~dg~i~i~KA~~Ine 83 (489)
T pfam06039 4 KVDVVLIGAGIMSATLGVLLKELEPNWSIEVFERLDGVAQESSNPWNNAGTGHSALCELNYTPEGADGSIDISKAVKINE 83 (489)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 10299999628899999999975998748999814752555078866552100021341488765688442799999999
Q ss_pred HCC---C-H--HHHCCC---C--CCCEEEEEEEE-------EEC-------C-----CCCEE-----CCCCCCCCCCCC-
Q ss_conf 678---7-2--641488---5--43224366999-------977-------9-----97677-----365435654467-
Q gi|254781024|r 69 LLP---R-W--REDKGH---P--FHTVVKRDLYW-------FLN-------A-----QRSIQ-----IPHFCLPDFMDN- 112 (554)
Q Consensus 69 L~P---d-~--~e~~g~---p--l~~~v~~d~~~-------~l~-------~-----~~~~~-----~p~~~~p~~~~~- 112 (554)
-|- . | .-..+. | +-.++.+-.+. ||. . .-.++ +.. -.|..|.+
T Consensus 84 qFe~Srqfws~lv~~g~l~~p~~fI~~~Phmsfv~Ge~~v~fLrkRye~lk~~~lF~~Me~seD~~~i~~-w~PLv~~gR 162 (489)
T pfam06039 84 QFQISRQFWAYLVKEGVLSNPKSFINPVPHMSFVWGEDNVAFLKKRYEALKQNPLFEGMEYSEDPEKIKE-WVPLMMEGR 162 (489)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHH-HCCCCCCCC
T ss_conf 9999999999998758989857850568815898776988999999998505878677784479899986-448003797
Q ss_pred -----------CCCEEEEHHHHHHHHHHHHHH-CCCEECCCCEEEEEEECCCC-CEEEEEECCCCCCCCCCCCCCCCCEE
Q ss_conf -----------882688888989999999987-49533068224347762776-20145412432443466578756302
Q gi|254781024|r 113 -----------KEHYIVSLGQVCRWLKNKAEA-LGVEIYCGFTATEIYYGKKG-EALGILTGEKGKNYDGTQGKHYIAPM 179 (554)
Q Consensus 113 -----------~g~yiv~r~~fd~~L~~~Ae~-~Gvei~~g~~v~~i~~~e~g-~vvgv~t~~~G~~k~~~~~~~~~~g~ 179 (554)
..+.-|+-+.+-+-|.+.++. .|++++.++.|.++....|| ..+.++....| ...
T Consensus 163 ~~~e~vAat~~~~GTdVnFGaLT~~l~~~l~~~~~~~l~~~~eV~~i~r~~dg~w~v~v~~~~~~------------~~~ 230 (489)
T pfam06039 163 DPDEPIAATRIDEGTDVNFGALTRQLFKYLQQKPNVELQYNHEVRDIKRNSDGTWTVTVKDLNTG------------DKR 230 (489)
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCEEEEEEECCCC------------CEE
T ss_conf 97885579944887401189999999999851898289927885345888999879999865789------------748
Q ss_pred EEEEEEEEEECCCCCH-HHHH
Q ss_conf 6774257860664432-5542
Q gi|254781024|r 180 LLLSKYMLVGEGACGS-LTRQ 199 (554)
Q Consensus 180 ~i~Ak~vI~AdG~~s~-lak~ 199 (554)
+++||+|+..-|..+. |.++
T Consensus 231 ~~~A~fVfvgAGG~sL~LlQk 251 (489)
T pfam06039 231 TIKAKFVFIGAGGGALPLLQK 251 (489)
T ss_pred EEEECEEEECCCHHHHHHHHH
T ss_conf 998267998887577899998
No 232
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase; InterPro: IPR006322 These sequences represent one of two closely related subfamilies of glutathione reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione reductases of animals, yeast, and a number of animal-resident bacteria. ; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=97.94 E-value=3.6e-05 Score=54.80 Aligned_cols=149 Identities=17% Similarity=0.294 Sum_probs=88.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCE----EC-HHHHHHHCCCHHHHCCCCCCCEEEEE
Q ss_conf 64779998976899999999980899739999786778986402740----33-36788867872641488543224366
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAI----ID-PIGIDSLLPRWREDKGHPFHTVVKRD 88 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~v----l~-p~aL~eL~Pd~~e~~g~pl~~~v~~d 88 (554)
+||.||||||--|.+.|.|++..| .+++|+|...-=|.=.=-|.| +| ...+.|.+-.+.++-|.+.+.|.-
T Consensus 2 ~YDylvIGGGSGGiAsa~RAa~~G--A~~llvE~~~LGGTCVNVGCVPKKvMW~aa~~~e~~~~~~~~YGf~~~lPld-- 77 (475)
T TIGR01421 2 EYDYLVIGGGSGGIASARRAAEHG--AKALLVEEKKLGGTCVNVGCVPKKVMWYAASLAETMHRDAADYGFKSELPLD-- 77 (475)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHC--CEEEEEEHHCCCCEEEEECEECCHHHCCHHHHHHHHHHHHCCCCCCCCCCCC--
T ss_conf 754699836861578889888507--6078762000488068501137623200567778875221027854336410--
Q ss_pred EEEEECCCC-CEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCC-CEEEEEECCCCCC
Q ss_conf 999977997-67736543565446788268888898999999998749533068224347762776-2014541243244
Q gi|254781024|r 89 LYWFLNAQR-SIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKG-EALGILTGEKGKN 166 (554)
Q Consensus 89 ~~~~l~~~~-~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g-~vvgv~t~~~G~~ 166 (554)
..+ .|.|+. ..+|..+||- | +...--+.-+..++|++.|.+. |..+. -.|-|.-.+
T Consensus 78 ------~~~l~F~f~~-----l~~~RdaYv~-r--l~~~Y~~~L~~~~vd~i~G~A~----F~~~~kPtveV~g~~---- 135 (475)
T TIGR01421 78 ------KENLKFNFKE-----LKEKRDAYVD-R--LNGIYQKNLEKNKVDVIEGHAE----FTKDQKPTVEVNGKE---- 135 (475)
T ss_pred ------CCCCEECHHH-----HHHHHHHHHH-H--HHHHHHCCCCCCCEEEEEEEEE----ECCCCCCCEEECCCC----
T ss_conf ------0366007799-----9876678999-9--8887524865055438986788----748889634773642----
Q ss_pred CCCCCCCCCCCEEEEEEEEEEEECCCCCHHH
Q ss_conf 3466578756302677425786066443255
Q gi|254781024|r 167 YDGTQGKHYIAPMLLLSKYMLVGEGACGSLT 197 (554)
Q Consensus 167 k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~la 197 (554)
.....++|+.++.|.|.+.+.-
T Consensus 136 ---------nttevy~A~HIliATGG~p~~p 157 (475)
T TIGR01421 136 ---------NTTEVYTAPHILIATGGKPSIP 157 (475)
T ss_pred ---------CCEEEEECCEEEEECCCCCCCC
T ss_conf ---------4302576270589448724787
No 233
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.90 E-value=2e-05 Score=56.56 Aligned_cols=37 Identities=35% Similarity=0.586 Sum_probs=33.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 647799989768999999999808997399997867789
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG 52 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG 52 (554)
.||.+|||||-+|+..|..|+++|+ +|+++||...+|
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk--~VLIvekR~HIG 37 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGK--RVLIVEKRNHIG 37 (374)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC--EEEEEECCCCCC
T ss_conf 9758998776268899999997598--799996256678
No 234
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.88 E-value=0.00055 Score=46.60 Aligned_cols=61 Identities=23% Similarity=0.269 Sum_probs=39.9
Q ss_pred HHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHH
Q ss_conf 9999999874953306822434776277620145412432443466578756302677425786066443255
Q gi|254781024|r 125 RWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLT 197 (554)
Q Consensus 125 ~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~la 197 (554)
+.|.+..++.|++++.++.++++...+++..+.+.....+ .+.++.++.++.|-|.+..+.
T Consensus 219 ~~l~~~l~~~gi~i~~~~~v~~~~~~~~~~~~~~~~~~~~------------~~~~i~~D~vl~a~Gr~Pn~~ 279 (466)
T PRK06115 219 KTLQKALAKQGMRFKLGSKVTQATAGADGVSLTLEPAAGG------------AAESLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred HHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEEEECCCC------------CEEEEECCEEEEEECCCCCCC
T ss_conf 8888899876949995898999998499699999975588------------504897169999416765776
No 235
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.85 E-value=2.5e-05 Score=55.97 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=31.9
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 0364779998976899999999980899739999786
Q gi|254781024|r 12 VFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKS 48 (554)
Q Consensus 12 ~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~ 48 (554)
.|.++|+|||||-||+=||+.+||.| ++|+|+|-.
T Consensus 1 ~m~~~ViVIGgGhAG~EAA~a~Ar~G--~~v~L~emr 35 (434)
T PRK05335 1 MMMKPVNVIGAGLAGSEAAWQLAKRG--VPVELYEMR 35 (434)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEEEC
T ss_conf 99885699898689999999999689--967999933
No 236
>TIGR01438 TGR thioredoxin and glutathione reductase; InterPro: IPR006338 This homodimeric, FAD-containing member of the pyridine nucleotide disulphide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-terminal arm of the protein is proposed to allow broad substrate specificity , .; GO: 0016654 oxidoreductase activity acting on NADH or NADPH disulfide as acceptor, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport.
Probab=97.84 E-value=1.8e-05 Score=56.94 Aligned_cols=32 Identities=38% Similarity=0.752 Sum_probs=30.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 6477999897689999999998089973999978
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEK 47 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK 47 (554)
+||.|||||||.|++||.++|+.|+ +|+|||-
T Consensus 2 dyDlivIGgGsGGla~aKeAA~~ga--~V~l~D~ 33 (513)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAAKYGA--KVLLLDY 33 (513)
T ss_pred CCCEEEECCCCCHHHHHHHHHHCCC--CEEEEEE
T ss_conf 6427998589734689999986099--1899963
No 237
>KOG1238 consensus
Probab=97.83 E-value=2.3e-05 Score=56.20 Aligned_cols=37 Identities=35% Similarity=0.651 Sum_probs=33.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 64779998976899999999980899739999786778
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEV 51 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~p 51 (554)
+||-||||||-|||+.|.+|++. ...||||||++..|
T Consensus 57 ~yDyIVVGgGtAGcvlAarLSEn-~~~~VLLLEaGg~~ 93 (623)
T KOG1238 57 SYDYIVVGGGTAGCVLAARLSEN-PNWSVLLLEAGGDP 93 (623)
T ss_pred CCCEEEECCCCHHHHHHHHHCCC-CCCEEEEEECCCCC
T ss_conf 79989989873127888765138-87349999568997
No 238
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.81 E-value=0.00057 Score=46.49 Aligned_cols=40 Identities=25% Similarity=0.202 Sum_probs=33.0
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCC-----HHHHHHHHHHHHHHHH
Q ss_conf 423088799612323313664352-----2689999999999999
Q gi|254781024|r 318 KLSFPGGSLIGCAAGFVNLLRIKG-----SHNAIISGMLAAEKIV 357 (554)
Q Consensus 318 k~~~~g~lLvGDAAG~vnP~~g~G-----I~~Am~SG~lAAEai~ 357 (554)
+...+++..+||.|...+..+++= .+.|++.|++||+.++
T Consensus 258 ~Ts~p~IyA~GD~a~~~~~~t~~~~~~~l~~~A~~qgriaa~ni~ 302 (427)
T TIGR03385 258 QTSVPNIYAAGDVAESKNIVTKKPAWIPLAWGANKMGRIVGENIA 302 (427)
T ss_pred CCCCCCEEEEECEEECCCCCCCCCCEECCHHHHHHHHHHHHHHHC
T ss_conf 436899999821041145556884234156899999999999745
No 239
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.80 E-value=0.0006 Score=46.32 Aligned_cols=40 Identities=20% Similarity=0.148 Sum_probs=32.8
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCC-----HHHHHHHHHHHHHHHH
Q ss_conf 423088799612323313664352-----2689999999999999
Q gi|254781024|r 318 KLSFPGGSLIGCAAGFVNLLRIKG-----SHNAIISGMLAAEKIV 357 (554)
Q Consensus 318 k~~~~g~lLvGDAAG~vnP~~g~G-----I~~Am~SG~lAAEai~ 357 (554)
+...+++..+||.|...+..+++. .+.|+..|++||+.+.
T Consensus 270 ~Ts~~~IyA~GD~~~~~~~~~~~~~~~~l~~~A~~~g~iaa~n~~ 314 (443)
T PRK09564 270 ETSIENIYSAGDCATVYNIVSGKNVYVPLATTANKLGRIVGENLA 314 (443)
T ss_pred CCCCCCEEEEECCHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHC
T ss_conf 278899999965731035557885686547889999899998605
No 240
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.73 E-value=0.0011 Score=44.63 Aligned_cols=37 Identities=24% Similarity=0.483 Sum_probs=31.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 7999897689999999998089973999978677898
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGA 53 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~ 53 (554)
++|||+|+||.++|..|.+...+..|.++.+...+..
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~ 37 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSY 37 (415)
T ss_pred CEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 9898255999999999985077788599952354455
No 241
>KOG2311 consensus
Probab=97.73 E-value=7.9e-05 Score=52.46 Aligned_cols=143 Identities=22% Similarity=0.232 Sum_probs=72.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECC-CCCCCCCC---CCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEE
Q ss_conf 64779998976899999999980899739999786-77898640---274033367888678726414885432243669
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKS-AEVGAHIL---SGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDL 89 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~-~~pG~~i~---sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~ 89 (554)
.|||||||||-||+-||...||.|. +.+||-.. ..+|--.| -|++=.-+-++|. | ...| +...|.
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga--~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEV--D--ALdG--l~~rvc--- 96 (679)
T KOG2311 28 TYDVVVIGGGHAGCEAAAAAARLGA--RTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREV--D--ALDG--LCSRVC--- 96 (679)
T ss_pred CCCEEEECCCCCCHHHHHHHHHCCC--CEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEE--H--HHCC--HHHHHH---
T ss_conf 5557998787520488898874187--347863255610134457655876653024431--2--0025--676541---
Q ss_pred EEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCC------CEECCCCEEEEEEECCCC---CEEEEEE
Q ss_conf 9997799767736543565446788268888898999999998749------533068224347762776---2014541
Q gi|254781024|r 90 YWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALG------VEIYCGFTATEIYYGKKG---EALGILT 160 (554)
Q Consensus 90 ~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~G------vei~~g~~v~~i~~~e~g---~vvgv~t 160 (554)
...++..-. + ...+..+.--.|.+.|+-|..+....- .+|+.+..+.-++.+++. ++.||.+
T Consensus 97 -----D~s~vq~k~--L--Nrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~~V~dliv~~~~~~~~~~~gV~l 167 (679)
T KOG2311 97 -----DQSGVQYKV--L--NRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREGAVADLIVEDPDDGHCVVSGVVL 167 (679)
T ss_pred -----HHHHHHHHH--H--HCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHEEECCCCCCCEEEEEEEE
T ss_conf -----155556877--5--0257972237087651999999999875268760012200133363168887347778997
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEEEEEEECC
Q ss_conf 2432443466578756302677425786066
Q gi|254781024|r 161 GEKGKNYDGTQGKHYIAPMLLLSKYMLVGEG 191 (554)
Q Consensus 161 ~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG 191 (554)
.+ |+.+.|+.||.-.|
T Consensus 168 ~d---------------gt~v~a~~VilTTG 183 (679)
T KOG2311 168 VD---------------GTVVYAESVILTTG 183 (679)
T ss_pred EC---------------CCEECCCEEEEEEC
T ss_conf 55---------------72731434999613
No 242
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.72 E-value=0.00073 Score=45.72 Aligned_cols=178 Identities=21% Similarity=0.307 Sum_probs=96.2
Q ss_pred HHCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC-----C-----CC------------CEEC-HHH-
Q ss_conf 0103647799989768999999999808997399997867789864-----0-----27------------4033-367-
Q gi|254781024|r 10 KDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI-----L-----SG------------AIID-PIG- 65 (554)
Q Consensus 10 re~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i-----~-----sG------------~vl~-p~a- 65 (554)
...+++|||+||||--+++.+..|+++.++.+|.++||-..++.-. - || +.++ .+|
T Consensus 5 ~~~~~~DvvLIGaGIMSaTLg~lL~el~P~~~I~i~Erl~~~A~ESS~~wNNAGTGHaa~CELNYTp~~~dG~i~i~KA~ 84 (499)
T PRK05257 5 SEESKTDVVLIGAGIMSATLGTLLKELEPEWSITMFERLDGVALESSNGWNNAGTGHSALCELNYTPEQADGSIDISKAV 84 (499)
T ss_pred CCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf 78886668999952889999999997099874899992460054507665545440213022148877679837089999
Q ss_pred -HHHHCCC----H--HHHCC---CC--CCCEEEEEEEEEECCCC--------------CE---ECCC------CCCCCCC
Q ss_conf -8886787----2--64148---85--43224366999977997--------------67---7365------4356544
Q gi|254781024|r 66 -IDSLLPR----W--REDKG---HP--FHTVVKRDLYWFLNAQR--------------SI---QIPH------FCLPDFM 110 (554)
Q Consensus 66 -L~eL~Pd----~--~e~~g---~p--l~~~v~~d~~~~l~~~~--------------~~---~~p~------~~~p~~~ 110 (554)
++|-|-- | .-..| .| +-.+|.+-.|.+-.++- -| ++.. .-.|-.|
T Consensus 85 ~Ine~Fe~SrQfWs~lv~~g~l~~P~~FI~~vPHmSfV~G~~nv~fLrkR~~al~~~~lF~~Mefsed~~~i~~W~PLvm 164 (499)
T PRK05257 85 KINEQFQISRQFWAYLVEKGVLPDPRSFINPVPHMSFVWGEDNVAFLKKRYEALKASPLFAGMEFSEDPAQIKEWAPLMM 164 (499)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHCCHHC
T ss_conf 99999999999999999758878968853568834788885878999999998743868788575479999986354300
Q ss_pred CC------------CCCEEEEHHHHHHHHHHHHHHC-CCEECCCCEEEEEEECCCC-CEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 67------------8826888889899999999874-9533068224347762776-20145412432443466578756
Q gi|254781024|r 111 DN------------KEHYIVSLGQVCRWLKNKAEAL-GVEIYCGFTATEIYYGKKG-EALGILTGEKGKNYDGTQGKHYI 176 (554)
Q Consensus 111 ~~------------~g~yiv~r~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~e~g-~vvgv~t~~~G~~k~~~~~~~~~ 176 (554)
.. ..+.-|+-+.+-+-|.+..+.. +++++.++.|+++....+| ..+.++-...|.
T Consensus 165 ~gR~~~e~vAaTr~~~GTDVnFGaLT~~l~~~l~~~~~~~l~~~~eV~~i~r~~dg~W~v~~~~~~~~~----------- 233 (499)
T PRK05257 165 EGRDPSEKVAATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGTWTVTVKDLKTGE----------- 233 (499)
T ss_pred CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCEEEEEEECCCCC-----------
T ss_conf 699989850058347875456899999999999758983899368875608889998799999878897-----------
Q ss_pred CEEEEEEEEEEEEC-CCCCHHHHH
Q ss_conf 30267742578606-644325542
Q gi|254781024|r 177 APMLLLSKYMLVGE-GACGSLTRQ 199 (554)
Q Consensus 177 ~g~~i~Ak~vI~Ad-G~~s~lak~ 199 (554)
...++|++|...- |..=.|.++
T Consensus 234 -~~~v~a~fVFiGAGG~aL~LLQk 256 (499)
T PRK05257 234 -KRTVRAKFVFIGAGGGALPLLQK 256 (499)
T ss_pred -EEEEEECEEEECCCCHHHHHHHH
T ss_conf -27998256998888145788988
No 243
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.71 E-value=0.0012 Score=44.28 Aligned_cols=56 Identities=18% Similarity=0.161 Sum_probs=28.3
Q ss_pred HHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHH
Q ss_conf 99999987495330682243477627762014541243244346657875630267742578606644325
Q gi|254781024|r 126 WLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSL 196 (554)
Q Consensus 126 ~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~l 196 (554)
.+.+..++.|+++++++.+.++..+++ ...+.+.+ | ...++.++.++.|-|.+..+
T Consensus 221 ~~~~~l~~~gi~i~~~~~v~~~~~~~~--~~~~~~~~-g------------~~~~i~~D~vl~a~Gr~Pn~ 276 (464)
T PRK05976 221 PVARLLKKLGVRVLTGAKVLGLTLDGG--VLIVAEHN-G------------EEKTLEADKVLVSVGRRPNT 276 (464)
T ss_pred HHHHHHHHCCCEEEECCEEEEEEECCC--EEEEEECC-C------------CEEEEEECEEEEECCCCCCC
T ss_conf 999999976979980888999994399--89999828-9------------77999836899914875563
No 244
>KOG1276 consensus
Probab=97.69 E-value=7.8e-05 Score=52.47 Aligned_cols=47 Identities=32% Similarity=0.543 Sum_probs=42.3
Q ss_pred HCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 10364779998976899999999980899739999786778986402
Q gi|254781024|r 11 DVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILS 57 (554)
Q Consensus 11 e~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~s 57 (554)
-+|--+|+|||||-+||+||++|++++.+..|.|.|++...|..|.|
T Consensus 8 ~~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276 8 AVSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred CEECCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEE
T ss_conf 32066699988853688999999854899559998427866652563
No 245
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.68 E-value=0.0013 Score=44.02 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=11.9
Q ss_pred HHHHHHHCCCEECCCCEEEEEEECC
Q ss_conf 9999987495330682243477627
Q gi|254781024|r 127 LKNKAEALGVEIYCGFTATEIYYGK 151 (554)
Q Consensus 127 L~~~Ae~~Gvei~~g~~v~~i~~~e 151 (554)
|.+..++.|++++.++.+.++..++
T Consensus 219 l~~~l~~~gi~i~~~~~v~~i~~~~ 243 (462)
T PRK06416 219 AERALKKRGIKIVTGAMAKKVEQTD 243 (462)
T ss_pred HHHHHHHCCCCEECCCEEEEEEECC
T ss_conf 9999996498514484699999729
No 246
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.68 E-value=4.3e-05 Score=54.31 Aligned_cols=42 Identities=43% Similarity=0.586 Sum_probs=35.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 47799989768999999999808997399997867789864027
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSG 58 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG 58 (554)
-.|.||||||||++||..|+++| .+|.+.|+.+.+|.=+.-|
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G--~~Vtv~e~~~~~GGll~yG 165 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAG--HDVTVFERVALDGGLLLYG 165 (457)
T ss_pred CEEEEECCCCHHHHCHHHHHHCC--CEEEECCCCCCCCEEEEEC
T ss_conf 67999888951555889998689--8799826667774479814
No 247
>PRK06116 glutathione reductase; Validated
Probab=97.67 E-value=0.0013 Score=43.92 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=26.2
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 4230887996123233136643522689999999999999
Q gi|254781024|r 318 KLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIV 357 (554)
Q Consensus 318 k~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~ 357 (554)
+..-+++..+||..|.. ++ .|.|...|+.||+.++
T Consensus 292 ~Ts~~~IyA~GDv~g~~-~l----ah~A~~~g~~~a~~i~ 326 (450)
T PRK06116 292 NTNVPGIYAVGDVTGRV-EL----TPVAIAAGRRLSERLF 326 (450)
T ss_pred CCCCCCEEEECCCCCCC-CC----HHHHHHHHHHHHHHHH
T ss_conf 77886337500146876-76----6899999999999981
No 248
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.61 E-value=0.0001 Score=51.74 Aligned_cols=40 Identities=45% Similarity=0.610 Sum_probs=35.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC
Q ss_conf 647799989768999999999808997399997867789864
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI 55 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i 55 (554)
..||||||||-||++||+.|.+.| ++|.+||-...+|.-.
T Consensus 7 ~~~viivGaGlaGL~AA~eL~kaG--~~v~ilEar~r~GGR~ 46 (450)
T COG1231 7 TADVIIVGAGLAGLSAAYELKKAG--YQVQILEARDRVGGRS 46 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCEE
T ss_conf 886899897268889999876468--1899986467767646
No 249
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.61 E-value=0.006 Score=39.38 Aligned_cols=210 Identities=13% Similarity=0.068 Sum_probs=103.8
Q ss_pred EEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCH-
Q ss_conf 8888898999999998749533068224347762776201454124324434665787563026774257860664432-
Q gi|254781024|r 117 IVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGS- 195 (554)
Q Consensus 117 iv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~- 195 (554)
.++=.+++-.+++.|.+.|++++..+.|+++.. ++|++.||.+.+.-. ....+++||+||=|.|+.+.
T Consensus 124 ~vDp~rl~~a~a~~A~~~Ga~i~~~~~V~~i~~-~~g~v~gv~v~d~~t----------g~~~~i~ak~VVNAaG~wad~ 192 (516)
T TIGR03377 124 TVDPFRLVAANVLDAQEHGARIFTYTKVTGLIR-EGGRVTGVKVEDHKT----------GEEERIEAQVVINAAGIWAGR 192 (516)
T ss_pred EECHHHHHHHHHHHHHHCCHHHHCCCEEEEEEE-ECCEEEEEEEEECCC----------CCEEEEEEEEEEECCCCCHHH
T ss_conf 786799999999999973656440736889998-899999999998688----------978999953899767735688
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCC
Q ss_conf 55421122489988889899889888875165667888089950434768766412576647980599998326665668
Q gi|254781024|r 196 LTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMNTSGGGFVYHFDDNLVSIGFVLHLDYRNPW 275 (554)
Q Consensus 196 lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~~~gggwiy~~~d~~~~iG~v~~ld~~~~~ 275 (554)
++++.+..+.+.+.. |. .-+.... ..+.....+.. +..+.++.|..++ .-||.- ..+..++.
T Consensus 193 i~~mag~~~~i~p~K-------G~---~lvld~~-----~~~~vi~~~~~-~~dg~i~vP~~~~-~liGTT-d~~~~d~d 254 (516)
T TIGR03377 193 IAEYAGLDIRMFPAK-------GA---LLIMNHR-----INNTVINRCRK-PSDADILVPGDTI-SIIGTT-SERIDDPD 254 (516)
T ss_pred HHHHCCCCCEEECCC-------EE---EEEECCC-----CCCCCCCCCCC-CCCCEEEEECCCC-EEECCC-CCCCCCCC
T ss_conf 987469983460188-------67---9983730-----25541210025-8986499844896-784567-87777667
Q ss_pred --CCHHHHHHHHHH-CCCHHHHHCCCCEECC--CCEECCCCCCCCCCCCCCCCEEE----ECCC-CCCCCCCCCCCHHHH
Q ss_conf --898899999860-8004565038826303--51340054212487423088799----6123-233136643522689
Q gi|254781024|r 276 --ISAYEELQRFKT-HPDIRIIFTEGERLEY--GARVISEGGWQSVPKLSFPGGSL----IGCA-AGFVNLLRIKGSHNA 345 (554)
Q Consensus 276 --~~~~~~lq~fk~-hp~i~~~l~gg~~~~y--ga~~ip~gg~~s~pk~~~~g~lL----vGDA-AG~vnP~~g~GI~~A 345 (554)
....++++.+.. ...+.+.+...+.+.. |.|.+....-..-.+-...++.+ +.|. .||++..-||
T Consensus 255 d~~~t~eevd~Ll~~~~~l~P~l~~~~vi~~faGvRPL~~~~~~~~~~~~sR~~~i~dh~~~~g~~Glisi~GGK----- 329 (516)
T TIGR03377 255 DLPVTQEEVDVLLREGAKLAPMLAQTRILRAFAGVRPLVAVDDDPSGRNISRGIVLLDHAERDGLPGFITITGGK----- 329 (516)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECC-----
T ss_conf 899899999999999998679998456788887531103689987643355541664112135888725875364-----
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999987
Q gi|254781024|r 346 IISGMLAAEKIVERL 360 (554)
Q Consensus 346 m~SG~lAAEai~eal 360 (554)
+.|-++-||.+++.+
T Consensus 330 lTT~R~mAe~~~d~v 344 (516)
T TIGR03377 330 LTTYRLMAEWATDVV 344 (516)
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 134288999999999
No 250
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.60 E-value=0.0022 Score=42.39 Aligned_cols=33 Identities=24% Similarity=0.115 Sum_probs=18.9
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 23088799612323313664352268999999999999
Q gi|254781024|r 319 LSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKI 356 (554)
Q Consensus 319 ~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai 356 (554)
...|++..+||..|-. + =.|.|..-|++||+.+
T Consensus 295 Ts~p~IyA~GDv~g~~-~----l~h~A~~~g~~aa~~~ 327 (458)
T PRK06912 295 TNVPHIYACGDVIGGI-Q----LAHVAFHEGTTAALHA 327 (458)
T ss_pred CCCCEEEEEECCCCCC-C----CCHHHHHHHHHHHHHH
T ss_conf 6876499962378987-7----7328999999999975
No 251
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=97.59 E-value=0.001 Score=44.76 Aligned_cols=77 Identities=25% Similarity=0.377 Sum_probs=56.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEEECCC
Q ss_conf 79998976899999999980899739999786778986402740333678886787264148854322436699997799
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFLNAQ 96 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~l~~~ 96 (554)
|+|||||+.|+-.|..|+++| .+|.|+|+.+.+ +|.+
T Consensus 2 v~iiGgG~ig~E~A~~l~~~G--~~Vtiie~~~~~------------------l~~~----------------------- 38 (82)
T pfam00070 2 VVVVGGGYIGLEFASALAKLG--SKVTVVERRDRL------------------LRGF----------------------- 38 (82)
T ss_pred EEEECCCHHHHHHHHHHHHCC--CEEEEECCCCCC------------------CHHC-----------------------
T ss_conf 999998899999999998639--278998125733------------------0227-----------------------
Q ss_pred CCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEE
Q ss_conf 767736543565446788268888898999999998749533068224347762776201454
Q gi|254781024|r 97 RSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGIL 159 (554)
Q Consensus 97 ~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~ 159 (554)
+ ..+-.++.+..++.|++++.++.++++..++++..+.+.
T Consensus 39 ----------------------d-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~ 78 (82)
T pfam00070 39 ----------------------D-EEIAKILQEKLEKNGIEVLLNTTVEEIEGNGDGVLVVLE 78 (82)
T ss_pred ----------------------C-HHHHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEEE
T ss_conf ----------------------9-889999999998669999749999999996999999998
No 252
>KOG2404 consensus
Probab=97.57 E-value=0.0014 Score=43.70 Aligned_cols=193 Identities=23% Similarity=0.313 Sum_probs=91.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC---CCC---CEECHHH----H--HHHCC-CHHH---HCCC
Q ss_conf 7799989768999999999808997399997867789864---027---4033367----8--88678-7264---1488
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI---LSG---AIIDPIG----I--DSLLP-RWRE---DKGH 79 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i---~sG---~vl~p~a----L--~eL~P-d~~e---~~g~ 79 (554)
-|||||+|-||++|+..+-..+. .|++|||...+|... -|| +..+.+- . -|||- |-.. -.+.
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg--~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~ 88 (477)
T KOG2404 11 PVVVIGGGLAGLSASNDIINKGG--IVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGV 88 (477)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC--EEEEEECCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 07998774032356777874487--5999824677677520102576777614565316566767776402432034786
Q ss_pred C--CCC--EEEEEEEEEECCCCCEEC------CCCCCCCCCCCCC----CE-EEEHHHHHHHHHHHHHHC--CCEECCCC
Q ss_conf 5--432--243669999779976773------6543565446788----26-888889899999999874--95330682
Q gi|254781024|r 80 P--FHT--VVKRDLYWFLNAQRSIQI------PHFCLPDFMDNKE----HY-IVSLGQVCRWLKNKAEAL--GVEIYCGF 142 (554)
Q Consensus 80 p--l~~--~v~~d~~~~l~~~~~~~~------p~~~~p~~~~~~g----~y-iv~r~~fd~~L~~~Ae~~--Gvei~~g~ 142 (554)
| ++. .-+.+-+.||...-.+.+ .....|+..+..+ ++ ++. .+-.-|-+.|.+. =+.|...+
T Consensus 89 ~eLm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~--~L~~~l~k~as~~pe~~ki~~ns 166 (477)
T KOG2404 89 PELMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVK--ALSTRLKKKASENPELVKILLNS 166 (477)
T ss_pred HHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH--HHHHHHHHHHHCCHHHHHHHHCC
T ss_conf 8999998736887899986330626689987258787753456899999608999--99999887653180777323136
Q ss_pred EEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHC-----CCCCCCCHHHHHH
Q ss_conf 24347762776201454124324434665787563026774257860664432554211224-----8998888989988
Q gi|254781024|r 143 TATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERY-----SLMDGRQPQKFGL 217 (554)
Q Consensus 143 ~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~-----~l~~~~~p~~~~~ 217 (554)
+|++++ .++|.|.||..-|....+. .+.+.-||+|.|-.+.-.+.+...| +|.....+|+-+-
T Consensus 167 kvv~il-~n~gkVsgVeymd~sgek~-----------~~~~~~VVlatGGf~ysd~~lLKey~pel~~lpTTNG~~~tGD 234 (477)
T KOG2404 167 KVVDIL-RNNGKVSGVEYMDASGEKS-----------KIIGDAVVLATGGFGYSDKELLKEYGPELFGLPTTNGAQTTGD 234 (477)
T ss_pred EEEEEE-CCCCEEEEEEEECCCCCCC-----------CEECCCEEEECCCCCCCHHHHHHHHCHHHCCCCCCCCCCCCCC
T ss_conf 245644-2788077799975789725-----------0104736995277675768999883866524776788743684
Q ss_pred HHHHHHH
Q ss_conf 9888875
Q gi|254781024|r 218 GIKELWK 224 (554)
Q Consensus 218 gvke~~e 224 (554)
|-|-+..
T Consensus 235 gqk~l~k 241 (477)
T KOG2404 235 GQKMLMK 241 (477)
T ss_pred HHHHHHH
T ss_conf 7888987
No 253
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.56 E-value=0.0016 Score=43.46 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=26.4
Q ss_pred HHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHH
Q ss_conf 9999987495330682243477627762014541243244346657875630267742578606644325
Q gi|254781024|r 127 LKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSL 196 (554)
Q Consensus 127 L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~l 196 (554)
|.+..++.|++++.++.+.++..++++..+.. . .|.++.++.|+.|-|....+
T Consensus 223 l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~--~---------------~g~~i~~D~Vl~a~Gr~pn~ 275 (465)
T PRK05249 223 LSYHFRNSGVVIRHNEEYEKVEGGDDGVILHL--K---------------SGKKIKADCLLYANGRTGNT 275 (465)
T ss_pred HHHHHHHCCCEEEECCEEEEEEEECCEEEEEE--C---------------CCCEEEEEEEEECCCCCCCC
T ss_conf 99999987929997988999996087679994--7---------------99599870899887666676
No 254
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.54 E-value=0.0041 Score=40.56 Aligned_cols=35 Identities=26% Similarity=0.259 Sum_probs=26.0
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 4230887996123233136643522689999999999999
Q gi|254781024|r 318 KLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIV 357 (554)
Q Consensus 318 k~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~ 357 (554)
+..-||+..+||..|-. + =.|.|+..|++|++.++
T Consensus 311 ~Ts~p~IyA~GDv~g~~-~----l~~~A~~eg~~a~~~~~ 345 (475)
T PRK06327 311 RTNVPNVYAIGDVVRGP-M----LAHKAEEEGVAVAERIA 345 (475)
T ss_pred CCCCCCEEECCCCCCCC-C----CHHHHHHHHHHHHHHHC
T ss_conf 46997538710147887-7----75599999999999866
No 255
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.44 E-value=0.004 Score=40.61 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=24.6
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 4230887996123233136643522689999999999999
Q gi|254781024|r 318 KLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIV 357 (554)
Q Consensus 318 k~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~ 357 (554)
+...||+..+||..|.. | =.|.|..-|++|++.++
T Consensus 302 rTs~~~IyA~GDv~g~~-~----l~h~A~~qg~ia~~n~~ 336 (467)
T PRK07845 302 RTSVPGIYAAGDCTGVL-P----LASVAAMQGRIAMYHAL 336 (467)
T ss_pred CCCCCEEEEEECCCCCC-C----CHHHHHHHHHHHHHHHH
T ss_conf 65877099970457886-7----65589999999999970
No 256
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.42 E-value=0.005 Score=39.91 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=18.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 7799989768999999999808997399997867
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
.++|||||+.|+-.|..|+++| -+|.|+|+.+
T Consensus 159 ~v~ViGgG~ig~E~A~~~~~lG--~~Vtli~~~~ 190 (438)
T PRK07251 159 RLGILGGGNIGLEFAGLYNKLG--SKVTVLDAAS 190 (438)
T ss_pred EEEEECCCHHHHHHHHHHHHCC--CEEEEEEECC
T ss_conf 6999888645889999998348--7689998461
No 257
>PRK13748 putative mercuric reductase; Provisional
Probab=97.41 E-value=0.0049 Score=40.01 Aligned_cols=36 Identities=19% Similarity=0.067 Sum_probs=27.0
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 42308879961232331366435226899999999999999
Q gi|254781024|r 318 KLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVE 358 (554)
Q Consensus 318 k~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~e 358 (554)
+...|++..+||..|.. ++ .|.|+.-|.+||+.+..
T Consensus 392 rTs~p~IYA~GDv~g~~-~L----ah~A~~eG~~aa~ni~g 427 (561)
T PRK13748 392 RTSVPHIYAAGDCTDQP-QF----VYVAAAAGTRAAINMTG 427 (561)
T ss_pred CCCCCCEEEEECCCCCC-CC----HHHHHHHHHHHHHHHCC
T ss_conf 30786299961016787-55----68999999999998619
No 258
>KOG0685 consensus
Probab=97.40 E-value=0.0003 Score=48.45 Aligned_cols=40 Identities=50% Similarity=0.657 Sum_probs=34.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC
Q ss_conf 47799989768999999999808997399997867789864
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI 55 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i 55 (554)
--|||||||-||++||.+|-++|- ..|+|+|-...+|.-|
T Consensus 22 ~kIvIIGAG~AGLaAA~rLle~gf-~~~~IlEa~dRIGGRI 61 (498)
T KOG0685 22 AKIVIIGAGIAGLAAATRLLENGF-IDVLILEASDRIGGRI 61 (498)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCC-CEEEEEEECCCCCCEE
T ss_conf 649998985677999999998289-6489997046667557
No 259
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.40 E-value=0.0033 Score=41.16 Aligned_cols=40 Identities=20% Similarity=0.029 Sum_probs=29.6
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCHH-----HHHHHHHHHHHHHH
Q ss_conf 42308879961232331366435226-----89999999999999
Q gi|254781024|r 318 KLSFPGGSLIGCAAGFVNLLRIKGSH-----NAIISGMLAAEKIV 357 (554)
Q Consensus 318 k~~~~g~lLvGDAAG~vnP~~g~GI~-----~Am~SG~lAAEai~ 357 (554)
+...|++..+||.|...+..+++-.+ .|.+.|++||+.+.
T Consensus 266 ~Ts~~~IyA~GD~a~~~~~~t~~~~~~pla~~A~~~g~iaa~nl~ 310 (438)
T PRK13512 266 ETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIA 310 (438)
T ss_pred ECCCCCEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 148999999942567301347875312351788999999999854
No 260
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.30 E-value=0.013 Score=37.15 Aligned_cols=101 Identities=21% Similarity=0.261 Sum_probs=67.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEEECC
Q ss_conf 77999897689999999998089973999978677898640274033367888678726414885432243669999779
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFLNA 95 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~l~~ 95 (554)
-++|||||+-|+=.|..++++| .+|.|||+.+.+ +|.+-+
T Consensus 175 ~lvIiGgG~IG~E~a~~~~~LG--~~VTive~~~~i------------------Lp~~D~-------------------- 214 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAALG--SKVTVVERGDRI------------------LPGEDP-------------------- 214 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCC------------------CCCCCH--------------------
T ss_conf 7999898889999999999869--978999468877------------------887799--------------------
Q ss_pred CCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 97677365435654467882688888989999999987495330682243477627762014541243244346657875
Q gi|254781024|r 96 QRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHY 175 (554)
Q Consensus 96 ~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~ 175 (554)
.+.+.+.+..++.|+.++.++.++.+...+++ +.+...+..
T Consensus 215 --------------------------ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~--v~v~~~~g~----------- 255 (454)
T COG1249 215 --------------------------EISKELTKQLEKGGVKILLNTKVTAVEKKDDG--VLVTLEDGE----------- 255 (454)
T ss_pred --------------------------HHHHHHHHHHHHCCEEEECCCEEEEEEECCCE--EEEEEECCC-----------
T ss_conf --------------------------99999999998589599835369999816980--899994697-----------
Q ss_pred CCEEEEEEEEEEEECCCCCHHH
Q ss_conf 6302677425786066443255
Q gi|254781024|r 176 IAPMLLLSKYMLVGEGACGSLT 197 (554)
Q Consensus 176 ~~g~~i~Ak~vI~AdG~~s~la 197 (554)
+.+++++.++.|-|.+..+.
T Consensus 256 --~~~~~ad~vL~AiGR~Pn~~ 275 (454)
T COG1249 256 --GGTIEADAVLVAIGRKPNTD 275 (454)
T ss_pred --CCEEEEEEEEEEECCCCCCC
T ss_conf --76799849999327866888
No 261
>TIGR02053 MerA mercuric reductase; InterPro: IPR011796 This entry represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH .; GO: 0016152 mercury (II) reductase activity, 0045340 mercury ion binding, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport, 0050787 detoxification of mercury ion.
Probab=97.27 E-value=0.0013 Score=44.09 Aligned_cols=36 Identities=39% Similarity=0.691 Sum_probs=32.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CCCEEEEEECCCC
Q ss_conf 47799989768999999999808-9973999978677
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQIN-PHLSVVILEKSAE 50 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g-~~l~VlvlEK~~~ 50 (554)
||+||||.|-|+-|||+..++.| -..||+++|+|.-
T Consensus 1 yd~~iiG~GaAAfaAai~A~e~GsGqa~v~mv~~G~~ 37 (494)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGSGQAKVAMVERGPL 37 (494)
T ss_pred CEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 9189982768999999999854887159999637897
No 262
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.26 E-value=0.0053 Score=39.75 Aligned_cols=56 Identities=21% Similarity=0.167 Sum_probs=39.4
Q ss_pred CCEECCCCCCCCCCCCCCCCEEEECCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 513400542124874230887996123233136-64352268999999999999998745
Q gi|254781024|r 304 GARVISEGGWQSVPKLSFPGGSLIGCAAGFVNL-LRIKGSHNAIISGMLAAEKIVERLSN 362 (554)
Q Consensus 304 ga~~ip~gg~~s~pk~~~~g~lLvGDAAG~vnP-~~g~GI~~Am~SG~lAAEai~eal~~ 362 (554)
.++.+-....+ ....+++..+||.|.+.++ +.=.=--.|+..|..+|+.|...++.
T Consensus 277 ~Grl~V~~~L~---~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 277 RGRLVVNPTLQ---VPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred CCCEEECCCCC---CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 89777578751---6998986997111037688879981188999999999999999649
No 263
>PRK07846 mycothione/glutathione reductase; Reviewed
Probab=97.26 E-value=0.0072 Score=38.82 Aligned_cols=35 Identities=14% Similarity=0.072 Sum_probs=24.6
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 4230887996123233136643522689999999999999
Q gi|254781024|r 318 KLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIV 357 (554)
Q Consensus 318 k~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~ 357 (554)
++..|++..+||.+|-. .=.|.|+.-|++||+.++
T Consensus 291 ~Ts~~~IyA~GDv~g~~-----~lah~A~~qg~ia~~~i~ 325 (453)
T PRK07846 291 RTSARGVFALGDVSSPY-----QLKHVANHEARVVKHNLL 325 (453)
T ss_pred CCCCCEEEEEEECCCCC-----CCHHHHHHHHHHHHHHHH
T ss_conf 64787299987468876-----762289999999999972
No 264
>KOG3923 consensus
Probab=97.25 E-value=0.019 Score=35.88 Aligned_cols=235 Identities=15% Similarity=0.102 Sum_probs=112.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-----CCCEEEEEECCCCCCCCC-CCCCEECHHH----------------HHHHCCC
Q ss_conf 47799989768999999999808-----997399997867789864-0274033367----------------8886787
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQIN-----PHLSVVILEKSAEVGAHI-LSGAIIDPIG----------------IDSLLPR 72 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g-----~~l~VlvlEK~~~pG~~i-~sG~vl~p~a----------------L~eL~Pd 72 (554)
-+|+|||+|--|+|+|+.+.++. +.++|-+++-..++-.-. +..+++.|.. .+-|.-=
T Consensus 4 ~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AGl~~p~~~~~~~~~~~~~w~k~tf~~l~~l 83 (342)
T KOG3923 4 PRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAGLFRPDLSDGTPQEINRQWGKDTFNYLAHL 83 (342)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 60899747710156899999865412688622787457786555554346421114678970788999879999999998
Q ss_pred HHHHCCCCCCCEEEEEEEEEECCCCCE---------------ECCC-----CCCC-CCCCCCCCEEEEHHHHHHHHHHHH
Q ss_conf 264148854322436699997799767---------------7365-----4356-544678826888889899999999
Q gi|254781024|r 73 WREDKGHPFHTVVKRDLYWFLNAQRSI---------------QIPH-----FCLP-DFMDNKEHYIVSLGQVCRWLKNKA 131 (554)
Q Consensus 73 ~~e~~g~pl~~~v~~d~~~~l~~~~~~---------------~~p~-----~~~p-~~~~~~g~yiv~r~~fd~~L~~~A 131 (554)
|+- ..++. .-|.--.-+.++....+ .++. +..+ ..-.....|...-.+|..||-++-
T Consensus 84 ~rs-~~a~~-aGV~l~sg~~ls~~e~~~~~~~~w~diV~~fr~l~e~EL~~f~~~~~~G~~~Tt~~sE~~~ylpyl~k~l 161 (342)
T KOG3923 84 ARS-EEAGE-AGVCLVSGHILSDSESLDDQQRSWGDIVYGFRDLTERELLGFPDYSTYGIHFTTYLSEGPKYLPYLKKRL 161 (342)
T ss_pred HCC-CCCCC-CCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHH
T ss_conf 605-55664-6258861167415787312345687764333217988853788866563667764006545668999999
Q ss_pred HHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 87495330682243477627762014541243244346657875630267742578606644325542112248998888
Q gi|254781024|r 132 EALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQ 211 (554)
Q Consensus 132 e~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~ 211 (554)
.+.|+++...- +.++ +|- . +=.++++|-..|-.+. +|... ...-
T Consensus 162 ~e~Gvef~~r~-v~~l--~E~--------~------------------~~~~DVivNCtGL~a~---~L~gD----d~~y 205 (342)
T KOG3923 162 TENGVEFVQRR-VESL--EEV--------A------------------RPEYDVIVNCTGLGAG---KLAGD----DDLY 205 (342)
T ss_pred HHCCCEEEEEE-ECCH--HHH--------C------------------CCCCCEEEECCCCCCC---CCCCC----CCEE
T ss_conf 85584898756-0558--774--------2------------------5788689987764422---23688----6521
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCH
Q ss_conf 98998898888751656678880899504347687664125766479805999983266656688988999998608004
Q gi|254781024|r 212 PQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMNTSGGGFVYHFDDNLVSIGFVLHLDYRNPWISAYEELQRFKTHPDI 291 (554)
Q Consensus 212 p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~~~gggwiy~~~d~~~~iG~v~~ld~~~~~~~~~~~lq~fk~hp~i 291 (554)
| ++ -..-..+.-++.|++--+. .. -+++|..++ +.+|-+.+.+..|......+..+-++..-.+
T Consensus 206 P------iR----GqVl~V~ApWvkhf~~~D~----~~-ty~iP~~~~-V~lGg~~Q~g~w~~ei~~~D~~dIl~rc~aL 269 (342)
T KOG3923 206 P------IR----GQVLKVDAPWVKHFIYRDF----SR-TYIIPGTES-VTLGGTKQEGNWNLEITDEDRRDILERCCAL 269 (342)
T ss_pred E------CC----CEEEEEECCCEEEEEEECC----CC-EEEECCCCE-EEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 3------13----4599960770258887258----85-088458864-8980410477556657755699999999872
Q ss_pred HHHHCCCCEECC
Q ss_conf 565038826303
Q gi|254781024|r 292 RIIFTEGERLEY 303 (554)
Q Consensus 292 ~~~l~gg~~~~y 303 (554)
.+-|...+++.-
T Consensus 270 ~P~l~~a~ii~E 281 (342)
T KOG3923 270 EPSLRHAEIIRE 281 (342)
T ss_pred CCCCCCCEEHHH
T ss_conf 844135300132
No 265
>KOG4716 consensus
Probab=97.25 E-value=0.00034 Score=48.04 Aligned_cols=39 Identities=28% Similarity=0.549 Sum_probs=33.8
Q ss_pred CCCHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 42001036477999897689999999998089973999978
Q gi|254781024|r 7 LHNKDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEK 47 (554)
Q Consensus 7 ~~~re~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK 47 (554)
...+-+-+||.||||||.+|++||...+++|+ +|++||-
T Consensus 12 ~~~~~sydyDLIviGgGSgGLacaKeAa~~G~--kV~~lDf 50 (503)
T KOG4716 12 ARLFSSYDYDLIVIGGGSGGLACAKEAADLGA--KVACLDF 50 (503)
T ss_pred HHHCCCCCCCEEEECCCCCHHHHHHHHHHCCC--CEEEEEE
T ss_conf 35133477447998688513667799886087--0799961
No 266
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.21 E-value=0.013 Score=36.94 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=18.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 799989768999999999808997399997867
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
++|||||+.|+-.|..|+++| .+|.|||+.+
T Consensus 177 v~IiGgG~ig~E~A~~~~~lG--~~Vtli~~~~ 207 (472)
T PRK06467 177 LLVMGGGIIGLEMGTVYHRLG--SEVDVVEMFD 207 (472)
T ss_pred EEEECCCHHHHHHHHHHHHCC--CEEEEEEECC
T ss_conf 999956472899999998529--8689996045
No 267
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.20 E-value=0.009 Score=38.14 Aligned_cols=35 Identities=14% Similarity=0.073 Sum_probs=23.6
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 4230887996123233136643522689999999999999
Q gi|254781024|r 318 KLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIV 357 (554)
Q Consensus 318 k~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~ 357 (554)
+...|++..+||.+|-.. =.|.|+.-|+.||+.++
T Consensus 292 ~Ts~~~IyA~GDv~g~~~-----Lah~A~~eg~~a~~ni~ 326 (452)
T TIGR03452 292 RTSARGVWALGDVSSPYQ-----LKHVANAEARVVKHNLL 326 (452)
T ss_pred CCCCCEEEEEECCCCCCC-----CHHHHHHHHHHHHHHHC
T ss_conf 868973999740688757-----70089999999999970
No 268
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.18 E-value=0.0098 Score=37.90 Aligned_cols=40 Identities=25% Similarity=-0.022 Sum_probs=30.8
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 423088799612323313664352268999999999999998745
Q gi|254781024|r 318 KLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSN 362 (554)
Q Consensus 318 k~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~ 362 (554)
+...+|+...||+..- ..=+-.||..|+.||++|.+.|..
T Consensus 429 ~Ts~~gVFA~GD~~~G-----~~~vv~Ai~~Gr~AA~~I~~~L~G 468 (472)
T PRK12810 429 QTSNPKVFAAGDMRRG-----QSLVVWAIAEGRQAARAIDAYLMG 468 (472)
T ss_pred CCCCCCEEEECCCCCC-----HHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 4599999983687778-----169999999999999999998479
No 269
>KOG1336 consensus
Probab=97.16 E-value=0.02 Score=35.72 Aligned_cols=33 Identities=24% Similarity=0.498 Sum_probs=26.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 779998976899999999980899739999786
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKS 48 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~ 48 (554)
-|+|||+||+|+.|+..+.+.|.--+.++.-++
T Consensus 76 ~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~ 108 (478)
T KOG1336 76 HFVIVGGGPGGAVAIETLRQVGFTERIALVKRE 108 (478)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 499976882033557667752887660787423
No 270
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=97.16 E-value=0.012 Score=37.20 Aligned_cols=104 Identities=23% Similarity=0.291 Sum_probs=77.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEEECC
Q ss_conf 77999897689999999998089973999978677898640274033367888678726414885432243669999779
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFLNA 95 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~l~~ 95 (554)
-.||||||==|.=.|..++++| .+|.|||-.+ ++||.+-
T Consensus 180 slvIiGGGVIG~EfA~~f~~lG--~~VTv~E~~d------------------rILp~~D--------------------- 218 (481)
T TIGR01350 180 SLVIIGGGVIGVEFASIFASLG--VKVTVIEMLD------------------RILPGED--------------------- 218 (481)
T ss_pred EEEEECCCHHHHHHHHHHHHCC--CEEEEEECCC------------------CCCCCCC---------------------
T ss_conf 6699878667788999998539--8089994575------------------0035431---------------------
Q ss_pred CCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCC-CEECCCCEEE--EEEECCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 9767736543565446788268888898999999998749-5330682243--477627762014541243244346657
Q gi|254781024|r 96 QRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALG-VEIYCGFTAT--EIYYGKKGEALGILTGEKGKNYDGTQG 172 (554)
Q Consensus 96 ~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~G-vei~~g~~v~--~i~~~e~g~vvgv~t~~~G~~k~~~~~ 172 (554)
.++-+.+.++.++.| ++|.+++.|+ .+..+++..++-+.....|
T Consensus 219 -------------------------~evSk~~~~~L~~~GNv~i~~~~~V~~~~~~~~~~~v~~~~~~~g~g-------- 265 (481)
T TIGR01350 219 -------------------------AEVSKVVKKKLKKKGNVKILTNAKVTGAAVEKNDDQVVVEVELEGKG-------- 265 (481)
T ss_pred -------------------------HHHHHHHHHHHHHCCCEEEECCCEEECCEEEECCCEEEEEEEECCCC--------
T ss_conf -------------------------68999999999744984985485442335775287899999987998--------
Q ss_pred CCCCCEEEEEEEEEEEECCCCCHHH
Q ss_conf 8756302677425786066443255
Q gi|254781024|r 173 KHYIAPMLLLSKYMLVGEGACGSLT 197 (554)
Q Consensus 173 ~~~~~g~~i~Ak~vI~AdG~~s~la 197 (554)
+-..+.+++|+.|=|++..+.
T Consensus 266 ----e~~~~~~e~vLvavGR~pn~~ 286 (481)
T TIGR01350 266 ----EVETLTAEKVLVAVGRKPNTE 286 (481)
T ss_pred ----CEEEEEEEEEEEEECCCCCCC
T ss_conf ----058898739999842434767
No 271
>TIGR02053 MerA mercuric reductase; InterPro: IPR011796 This entry represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH .; GO: 0016152 mercury (II) reductase activity, 0045340 mercury ion binding, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport, 0050787 detoxification of mercury ion.
Probab=97.16 E-value=0.0006 Score=46.34 Aligned_cols=108 Identities=19% Similarity=0.302 Sum_probs=75.8
Q ss_pred HHCCC--CHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCC
Q ss_conf 10242--0010364779998976899999999980899739999786778986402740333678886787264148854
Q gi|254781024|r 4 CDILH--NKDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPF 81 (554)
Q Consensus 4 ~~~~~--~re~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl 81 (554)
.+.++ || ++|||+|+=|+=.|=.+||+| .+|.||+|+. .|||.|-+.
T Consensus 175 ~~~~Pdm~s------L~vIGgg~~g~E~aQ~faRLG--~~V~~~~RS~------------------~ll~~~epe----- 223 (494)
T TIGR02053 175 LDRIPDMES------LVVIGGGAIGVELAQAFARLG--SEVTILQRSE------------------RLLPREEPE----- 223 (494)
T ss_pred CCCCCCEEE------EEEECCCHHHHHHHHHHHHCC--CEEEHHHHHH------------------HHCCCCCHH-----
T ss_conf 687997046------888865289999999998577--6140367998------------------644646888-----
Q ss_pred CCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH-CCCEECCCC-EEEEEEE-CCCCCEEEE
Q ss_conf 3224366999977997677365435654467882688888989999999987-495330682-2434776-277620145
Q gi|254781024|r 82 HTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEA-LGVEIYCGF-TATEIYY-GKKGEALGI 158 (554)
Q Consensus 82 ~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~-~Gvei~~g~-~v~~i~~-~e~g~vvgv 158 (554)
-+. ..-+.-.+ .|+++...+ .++.+-. |++...+.+
T Consensus 224 --------------------------------------is~---~V~~~l~~eeGi~~~~~~r~~~~v~~rngg~~~~~~ 262 (494)
T TIGR02053 224 --------------------------------------ISA---AVEEALAEEEGIEVVTSARQVKAVSVRNGGGKIVTV 262 (494)
T ss_pred --------------------------------------HHH---HHHHHHCCCCCEEEEECCEEEEEEEECCCCEEEEEE
T ss_conf --------------------------------------999---999984147877998044035544452798189998
Q ss_pred EECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHH
Q ss_conf 412432443466578756302677425786066443255
Q gi|254781024|r 159 LTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLT 197 (554)
Q Consensus 159 ~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~la 197 (554)
..++. ..+++|+.+..|.|.+..+.
T Consensus 263 e~~~~--------------~~~~eAd~lLVATGR~PN~~ 287 (494)
T TIGR02053 263 EKNGG--------------KAEVEADELLVATGRRPNTD 287 (494)
T ss_pred ECCCC--------------CCEEEHHHHHHHHCCCCCCC
T ss_conf 55898--------------74574311255527875666
No 272
>PRK12831 putative oxidoreductase; Provisional
Probab=97.08 E-value=0.0097 Score=37.94 Aligned_cols=40 Identities=30% Similarity=0.061 Sum_probs=31.7
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 423088799612323313664352268999999999999998745
Q gi|254781024|r 318 KLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSN 362 (554)
Q Consensus 318 k~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~ 362 (554)
++..+|+...||+.. . -.=+-.||.+|+.||++|.+.|..
T Consensus 423 ~Ts~~gVFa~GD~~~---G--~~~vV~Ai~~Gr~AA~~I~~yL~g 462 (464)
T PRK12831 423 LTSIEGVYAGGDAVT---G--AATVILAMGAGKKAAKAIDEYLSK 462 (464)
T ss_pred CCCCCCEEECCCCCC---C--CHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 428999998278676---8--339999999999999999999735
No 273
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.08 E-value=0.014 Score=36.90 Aligned_cols=35 Identities=29% Similarity=0.268 Sum_probs=25.8
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 4230887996123233136643522689999999999999
Q gi|254781024|r 318 KLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIV 357 (554)
Q Consensus 318 k~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~ 357 (554)
+..-||+..+||..|.. .=.|.|+..|++||+.+.
T Consensus 295 ~Ts~p~IyA~GDv~g~~-----~la~~A~~qg~~a~~~i~ 329 (460)
T PRK06292 295 QTNVPGIYAAGDVNGGP-----PLLHEAADEGIIAAENAA 329 (460)
T ss_pred CCCCCCEEEECCCCCCC-----CCHHHHHHHHHHHHHHHH
T ss_conf 02887358740357887-----767899999999999972
No 274
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase; InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase . ; GO: 0008924 malate dehydrogenase (acceptor) activity, 0006099 tricarboxylic acid cycle.
Probab=97.03 E-value=0.031 Score=34.43 Aligned_cols=168 Identities=18% Similarity=0.202 Sum_probs=96.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC----CEECHHHHHHH--CC-----------------
Q ss_conf 47799989768999999999808997399997867789864027----40333678886--78-----------------
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSG----AIIDPIGIDSL--LP----------------- 71 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG----~vl~p~aL~eL--~P----------------- 71 (554)
.|||.||||-==+|.+.-|+++-+..++.||||-+.+=.- =|+ |..==.||-|| =|
T Consensus 1 ~DvvLvGAGIMSATLGvLLk~LeP~w~~~l~Erld~~A~E-SS~pWNNAGTGHSALCELNYtP~~~dG~idi~kAv~ine 79 (487)
T TIGR01320 1 TDVVLVGAGIMSATLGVLLKELEPSWEITLIERLDAVALE-SSNPWNNAGTGHSALCELNYTPEVADGSIDIAKAVGINE 79 (487)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC-CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHCCCCC
T ss_conf 9678865616689999999730999538999860774546-676600112013687642247887678265355622011
Q ss_pred -------------------CHHHHCCCCCCCEEEEEE-------EEEE-------CCCCCE--------------ECCCC
Q ss_conf -------------------726414885432243669-------9997-------799767--------------73654
Q gi|254781024|r 72 -------------------RWREDKGHPFHTVVKRDL-------YWFL-------NAQRSI--------------QIPHF 104 (554)
Q Consensus 72 -------------------d~~e~~g~pl~~~v~~d~-------~~~l-------~~~~~~--------------~~p~~ 104 (554)
|-+++. .+|.|-. +.|| +.+..| .+|.+
T Consensus 80 ~F~VsrQFWa~lv~~G~L~dp~~Fi-----NpVPH~Sfv~G~~~v~YLk~Ry~AL~~~~lF~~m~y~~d~~~~a~~lPLM 154 (487)
T TIGR01320 80 QFQVSRQFWAHLVEEGVLEDPKSFI-----NPVPHVSFVRGSDGVAYLKKRYEALKKHPLFEGMEYSEDKATFAEWLPLM 154 (487)
T ss_pred CCEECHHHHHHHHHCCCCCCCCCCC-----CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHCCCC
T ss_conf 4113188898998367246854022-----78885202657066799999999861784313750005868998742545
Q ss_pred CCCCCCC-------CCCCEEEEHHHHHHHHHHHHHHC-CCEECCCCEEEEEEECC-CCCEEEEEECCC-CCCCCCCCCCC
Q ss_conf 3565446-------78826888889899999999874-95330682243477627-762014541243-24434665787
Q gi|254781024|r 105 CLPDFMD-------NKEHYIVSLGQVCRWLKNKAEAL-GVEIYCGFTATEIYYGK-KGEALGILTGEK-GKNYDGTQGKH 174 (554)
Q Consensus 105 ~~p~~~~-------~~g~yiv~r~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~e-~g~vvgv~t~~~-G~~k~~~~~~~ 174 (554)
..-+.++ -.++-=|+-+.+-+=|.+.++.. |+++.++..|+++-.+. +.+++.+.-.+. |..|
T Consensus 155 ~~gR~~~~pvA~~~~~~GTDvdFGalt~Ql~~~~~~~PG~~~~yg~~V~~l~r~sD~~W~vt~~d~r~PG~~~------- 227 (487)
T TIGR01320 155 AKGRDFSEPVAANWVAEGTDVDFGALTKQLLKYLEQEPGTKIRYGHEVKDLKRESDGAWVVTVKDTRTPGGKR------- 227 (487)
T ss_pred CCCCCCCCHHHHHHHCCCCEECHHHHHHHHHHHHHCCCCCEEECCCCEEHHHHCCCCCCEEEECCCCCCCCCE-------
T ss_conf 6876886343321204784002778999999997028981676385000110105885378841220888762-------
Q ss_pred CCCEEEEEEEEE-EEECCCCCHHHHHH
Q ss_conf 563026774257-86066443255421
Q gi|254781024|r 175 YIAPMLLLSKYM-LVGEGACGSLTRQL 200 (554)
Q Consensus 175 ~~~g~~i~Ak~v-I~AdG~~s~lak~l 200 (554)
+|+||+| |+|-|-.=.|-++-
T Consensus 228 -----~l~a~FvFlGAGG~AL~lLq~S 249 (487)
T TIGR01320 228 -----TLKARFVFLGAGGGALPLLQKS 249 (487)
T ss_pred -----EEEEEEEEEECCCCHHHHHHHC
T ss_conf -----6766778971574168898866
No 275
>pfam00996 GDI GDP dissociation inhibitor.
Probab=97.01 E-value=0.0033 Score=41.21 Aligned_cols=103 Identities=22% Similarity=0.401 Sum_probs=65.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEEE
Q ss_conf 64779998976899999999980899739999786778986402740333678886787264148854322436699997
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFL 93 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~l 93 (554)
||||||+|-|-.=|..|..|++.|+ +||.+|+..+=|.. -+.| .|++|+-.+......|- ..+
T Consensus 4 eyDVIIlGTGL~EsILaaaLS~~GK--kVLHiDrN~yYGg~---~ASl---~l~~l~~~~~~~~~~~~---------~~~ 66 (439)
T pfam00996 4 EYDVIVLGTGLKECILSGLLSVDGK--KVLHIDRNDYYGGE---SASL---SLEQLYARFRGGEEKPP---------SKL 66 (439)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCC--EEEEECCCCCCCCC---CCCC---CHHHHHHHHCCCCCCCH---------HHH
T ss_conf 5029997998799999999973699--89997799877863---0152---89999998515667985---------560
Q ss_pred CCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEE
Q ss_conf 79976773654356544678826888889899999999874953306822434
Q gi|254781024|r 94 NAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATE 146 (554)
Q Consensus 94 ~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~ 146 (554)
...+.+.++. .|. ++.+++.+.+.|.. .+|.-+..|.+.+
T Consensus 67 g~sR~~niDL--~PK-------~l~a~g~LV~~Li~----S~V~rYLEFk~v~ 106 (439)
T pfam00996 67 GRSRDWNVDL--IPK-------FLMANGELVKLLIH----TDVTRYLEFKAVE 106 (439)
T ss_pred CCCCCCCCCC--CCH-------HEEECCHHHHHHHH----CCCHHEEEEEEEC
T ss_conf 5554661312--632-------03306579999986----6800146789825
No 276
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744 This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation.
Probab=96.98 E-value=0.0065 Score=39.16 Aligned_cols=80 Identities=13% Similarity=0.076 Sum_probs=51.2
Q ss_pred HHHHHHHHCCCEECC--CCEEEEEEECCCC-CEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCC--HHHHHH
Q ss_conf 999999874953306--8224347762776-20145412432443466578756302677425786066443--255421
Q gi|254781024|r 126 WLKNKAEALGVEIYC--GFTATEIYYGKKG-EALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACG--SLTRQL 200 (554)
Q Consensus 126 ~L~~~Ae~~Gvei~~--g~~v~~i~~~e~g-~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s--~lak~l 200 (554)
.|.++-|..|+.++. +....+++-+.|+ +..+++. .+|.++.|++||+|-|.|- .|+++.
T Consensus 194 lL~~~le~~G~~~l~Gt~k~t~eiv~~~d~~~~~~~rf---------------~DG~~l~aDlvv~A~GirP~~~LA~~a 258 (813)
T TIGR02374 194 LLQRELEKKGLTVLLGTEKDTVEIVGEDDVEKVERLRF---------------KDGSSLEADLVVFAAGIRPRDELAAEA 258 (813)
T ss_pred HHHHHHHHCCCEEEECCCCCEEEEEECCCHHHHCEEEC---------------CCCCEEEECEEEEECCCCCCHHHHHHC
T ss_conf 99999985795798617611057641564012312242---------------389788703799951566636899865
Q ss_pred HHHCCCCC---------CCCHHHHHHHHH
Q ss_conf 12248998---------888989988988
Q gi|254781024|r 201 IERYSLMD---------GRQPQKFGLGIK 220 (554)
Q Consensus 201 ~~~~~l~~---------~~~p~~~~~gvk 220 (554)
+..-+-|. ..+|+-||+|=-
T Consensus 259 Gl~v~~RrGiivnd~~qTs~P~IYAvGEc 287 (813)
T TIGR02374 259 GLKVNDRRGIIVNDSMQTSDPDIYAVGEC 287 (813)
T ss_pred CCCCCCCCCEEECCCCCCCCCCEEEEEEE
T ss_conf 97354767678726223788873356655
No 277
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.98 E-value=0.00078 Score=45.55 Aligned_cols=37 Identities=27% Similarity=0.118 Sum_probs=20.7
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 230887996123233136643522689999999999999987
Q gi|254781024|r 319 LSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERL 360 (554)
Q Consensus 319 ~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal 360 (554)
+..+|+...||+.. -..=+-.||..|+.||++|.+.|
T Consensus 615 Ts~pgVFAgGD~v~-----G~stVV~Ai~~Gr~AA~aId~yL 651 (654)
T PRK12769 615 TSNPKIFAGGDAVR-----GADLVVTAMAEGRHAAQGIIDWL 651 (654)
T ss_pred CCCCCEEEECCCCC-----CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999898078566-----82899999999999999999986
No 278
>KOG3851 consensus
Probab=96.93 E-value=0.0047 Score=40.15 Aligned_cols=53 Identities=23% Similarity=0.421 Sum_probs=39.3
Q ss_pred CCCCHHCCCCCEEEECCCHHHHHHHHHHHHC-CCCCEEEEEECCC----CCCCCCCCCC
Q ss_conf 2420010364779998976899999999980-8997399997867----7898640274
Q gi|254781024|r 6 ILHNKDVFEYDVVIIGAGPAGLAAAIRCKQI-NPHLSVVILEKSA----EVGAHILSGA 59 (554)
Q Consensus 6 ~~~~re~meyDVvIVGaGPAG~saA~~La~~-g~~l~VlvlEK~~----~pG~~i~sG~ 59 (554)
+...++.-+|.|+|||||-+|++.|..+.+. +.+ +|.++|-.+ .||.-.+.|+
T Consensus 31 ~~~~~~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g-~vgIvep~e~HyYQPgfTLvGgG 88 (446)
T KOG3851 31 MLARFARKHFKVLVVGGGSGGIGMAAKFYRKLGSG-SVGIVEPAEDHYYQPGFTLVGGG 88 (446)
T ss_pred HHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCC-CEEEECCHHHCCCCCCEEEECCC
T ss_conf 34330300348999867863057899998656898-55775521532457651786430
No 279
>KOG0405 consensus
Probab=96.92 E-value=0.0099 Score=37.88 Aligned_cols=152 Identities=18% Similarity=0.303 Sum_probs=80.0
Q ss_pred HHCCCCHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC-CCCCCE----EC-HHHHHHHCCCHHHHC
Q ss_conf 102420010364779998976899999999980899739999786778986-402740----33-367888678726414
Q gi|254781024|r 4 CDILHNKDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAH-ILSGAI----ID-PIGIDSLLPRWREDK 77 (554)
Q Consensus 4 ~~~~~~re~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~-i~sG~v----l~-p~aL~eL~Pd~~e~~ 77 (554)
.+.|++-+. +||-+|||||..|.++|.+.+..| .+|.|+|-.--.|.- ..-|.| ++ ...+.+.+-|-. ..
T Consensus 11 ~~~~a~~~k-~fDylvIGgGSGGvasARrAa~~G--Akv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~-~y 86 (478)
T KOG0405 11 IDKMAADVK-DFDYLVIGGGSGGVASARRAASHG--AKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAK-DY 86 (478)
T ss_pred CCCCCCCCC-CCCEEEECCCCCHHHHHHHHHHCC--CEEEEEECCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHH-HC
T ss_conf 886566544-236699847861367767787538--53799863778674478604564136774445567754566-42
Q ss_pred CCCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEE
Q ss_conf 88543224366999977997677365435654467882688888989999999987495330682243477627762014
Q gi|254781024|r 78 GHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALG 157 (554)
Q Consensus 78 g~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvg 157 (554)
|.|.+ ....|.|+. ..++...|+.++. ...-+......|+++.|...- .+++.+.
T Consensus 87 G~~~~------------~~~~fdW~~-----ik~krdayi~RLn---gIY~~~L~k~~V~~i~G~a~f----~~~~~v~- 141 (478)
T KOG0405 87 GFPIN------------EEGSFDWKV-----IKQKRDAYILRLN---GIYKRNLAKAAVKLIEGRARF----VSPGEVE- 141 (478)
T ss_pred CCCCC------------CCCCCCHHH-----HHHHHHHHHHHHH---HHHHHHCCCCCEEEEEEEEEE----CCCCCEE-
T ss_conf 98534------------446776799-----8751168999887---898854231540699626787----5899447-
Q ss_pred EEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHH
Q ss_conf 5412432443466578756302677425786066443255
Q gi|254781024|r 158 ILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLT 197 (554)
Q Consensus 158 v~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~la 197 (554)
|...+. .-+.++|+.++.|.|-+-..-
T Consensus 142 V~~~d~-------------~~~~Ytak~iLIAtGg~p~~P 168 (478)
T KOG0405 142 VEVNDG-------------TKIVYTAKHILIATGGRPIIP 168 (478)
T ss_pred EEECCC-------------EEEEEECCEEEEEECCCCCCC
T ss_conf 995388-------------157872140899737846789
No 280
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.88 E-value=0.032 Score=34.30 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=14.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 77999897689999999998089973999978
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEK 47 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK 47 (554)
-++|||||+-|+=.|..++++| .+|.|+++
T Consensus 224 ~lvIIGgG~IG~E~A~if~~lG--s~VTi~~r 253 (541)
T PTZ00052 224 KTLVVGASYVALECAGFLNSLG--FDVTVAVR 253 (541)
T ss_pred EEEEECCCHHHHHHHHHHHHCC--CEEEEEEC
T ss_conf 2899898699999999999759--85899953
No 281
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.87 E-value=0.0018 Score=43.02 Aligned_cols=37 Identities=32% Similarity=0.430 Sum_probs=32.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 64779998976899999999980899739999786778
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEV 51 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~p 51 (554)
-+-|.|||+||||..||.+|.+. .+++|-++||=+-|
T Consensus 39 PlRVAIVGSGPAGfYaA~~Llk~-~~v~VD~fErLP~P 75 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKH-ERVKVDIFEKLPNP 75 (506)
T ss_pred CCEEEEECCCCHHHHHHHHHHCC-CCCEEEEEECCCCC
T ss_conf 65799988883899999999638-99779888268988
No 282
>KOG0399 consensus
Probab=96.86 E-value=0.0016 Score=43.39 Aligned_cols=46 Identities=26% Similarity=0.513 Sum_probs=23.3
Q ss_pred HHCCHHHCCCC-CEEEEEEECCCCEEEEEECCCCCCCCC--C--CCCCCCCCCE
Q ss_conf 41781321358-600688965997056651566670475--7--3006888862
Q gi|254781024|r 491 IYSGPSMRYCP-AGVYEWHQNNDENNYIIHAQNCIHCKA--C--VIKDPNQNIE 539 (554)
Q Consensus 491 ~~~~p~~~~cp-a~vye~~~~~~~~~~~i~~~nc~hckt--c--~ik~p~~~i~ 539 (554)
.|..|-.|.-- -.||+.. ..+.+.-.+.-|..|+| | |--||-.||.
T Consensus 1656 ~yrdp~~r~ndw~e~~~~~---~~~~~~~qtarcmdcgtpfc~~~~gcpl~n~i 1706 (2142)
T KOG0399 1656 MYRDPKERLNDWKEVYDFE---AVSNLREQTARCMDCGTPFCQSDSGCPLGNII 1706 (2142)
T ss_pred CCCCHHHHCCCHHHHHHHC---CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 0268465313388764110---33156777668753798550578899665656
No 283
>KOG1800 consensus
Probab=96.86 E-value=0.0019 Score=42.90 Aligned_cols=38 Identities=34% Similarity=0.438 Sum_probs=32.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 77999897689999999998089973999978677898
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGA 53 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~ 53 (554)
-|.|||+||||..+|.+|-+.-.++.|-++||.+.|..
T Consensus 22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG 59 (468)
T KOG1800 22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG 59 (468)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 59998888368899999972589970675415776653
No 284
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=96.85 E-value=0.00092 Score=45.03 Aligned_cols=56 Identities=20% Similarity=0.434 Sum_probs=45.0
Q ss_pred CCCCCHHCCHHHHCCHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 7554400173541781321358600688965997056651566670475730068888625367
Q gi|254781024|r 480 DKDLQKKSELRIYSGPSMRYCPAGVYEWHQNNDENNYIIHAQNCIHCKACVIKDPNQNIEWNPP 543 (554)
Q Consensus 480 ~~~~~~~~~~~~~~~p~~~~cpa~vye~~~~~~~~~~~i~~~nc~hcktc~ik~p~~~i~w~~p 543 (554)
|.+-|+. =+.|++.||+++-+++ .+..+..|+...|+.|+.|.-.+|.+-|.|+.-
T Consensus 40 d~dkCig------C~~C~~~CP~~aI~~~--~~~~~~~i~~~~Ci~Cg~C~~~CP~~AI~~t~~ 95 (111)
T PRK08348 40 NVDKCVG------CRMCVTVCPAGVFVYL--PEIRKVALWTGRCVFCGQCVDVCPTGALQMSDD 95 (111)
T ss_pred CCCCCCC------CCHHHHHCCCCCCEEC--CCCCEEEECCCCCCCCCCCCCCCCCCCEECCCE
T ss_conf 8552828------0728775932206752--776667877790853887577377283687680
No 285
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.85 E-value=0.024 Score=35.19 Aligned_cols=45 Identities=18% Similarity=0.350 Sum_probs=35.5
Q ss_pred CHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEE
Q ss_conf 81321358600688965997056651566670475730068888625
Q gi|254781024|r 494 GPSMRYCPAGVYEWHQNNDENNYIIHAQNCIHCKACVIKDPNQNIEW 540 (554)
Q Consensus 494 ~p~~~~cpa~vye~~~~~~~~~~~i~~~nc~hcktc~ik~p~~~i~w 540 (554)
+.|+..||-+. +.....+..+.++..-|++|+-|...||...|+-
T Consensus 512 ~~Cv~vCP~~a--i~~~~~g~~~~~d~~~Ci~CG~C~~~CP~gai~M 556 (560)
T PRK12771 512 DNCYGFCPQDA--VIKLGKGRRVETDYDKCTGCHICSDVCPTGYIEM 556 (560)
T ss_pred CCHHHHCCCCC--CCCCCCCCEEEECHHHCCCCCCHHHHCCCCCCCC
T ss_conf 65755284321--0246788637748224667462142289873026
No 286
>PRK13795 hypothetical protein; Provisional
Probab=96.82 E-value=0.00061 Score=46.30 Aligned_cols=43 Identities=23% Similarity=0.688 Sum_probs=36.1
Q ss_pred CHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 813213586006889659970566515666704757300688886
Q gi|254781024|r 494 GPSMRYCPAGVYEWHQNNDENNYIIHAQNCIHCKACVIKDPNQNI 538 (554)
Q Consensus 494 ~p~~~~cpa~vye~~~~~~~~~~~i~~~nc~hcktc~ik~p~~~i 538 (554)
+-|...||.|.-.+ +++.+.+.||.++|+||+.|-.+||-.-+
T Consensus 581 g~C~~~CP~gAi~i--~~~~~~i~Vd~~~CihC~~C~~~Cp~~~~ 623 (630)
T PRK13795 581 GVCVGWCPTGAISI--DEKKKKIVVDEEKCIHCGKCMEVCPLVKY 623 (630)
T ss_pred CHHHHHCCCCCEEE--ECCCCEEEECCHHCCCHHHHHHHCCEEEE
T ss_conf 34663378884797--36886497471327743777623873256
No 287
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.77 E-value=0.0014 Score=43.88 Aligned_cols=39 Identities=15% Similarity=0.023 Sum_probs=30.0
Q ss_pred CCCCCCEEEECCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 42308879961232331366435-2268999999999999998745
Q gi|254781024|r 318 KLSFPGGSLIGCAAGFVNLLRIK-GSHNAIISGMLAAEKIVERLSN 362 (554)
Q Consensus 318 k~~~~g~lLvGDAAG~vnP~~g~-GI~~Am~SG~lAAEai~eal~~ 362 (554)
++..+|+...||+. +|. =+-.||..|+.||++|.+.|..
T Consensus 597 qTs~~gVFAgGD~v------~G~stVV~AI~~Gr~AA~sI~~yl~~ 636 (639)
T PRK12809 597 QTHLKKVFAGGDAV------HGADLVVTAMAAGRQAARDMLTLFDT 636 (639)
T ss_pred CCCCCCEEECCCCC------CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 68999999827878------67369999999999999999999874
No 288
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=96.74 E-value=0.00078 Score=45.52 Aligned_cols=73 Identities=22% Similarity=0.405 Sum_probs=52.0
Q ss_pred CCCCCCCCCCEEEEECCCCCHHCCHHHHCCHHHCCCCCEEEEEEECCC----CEEEEEECCCCCCCCCCCCCCCCCCCEE
Q ss_conf 788998886217961755440017354178132135860068896599----7056651566670475730068888625
Q gi|254781024|r 465 KVKYVKEQPMHLLIKDKDLQKKSELRIYSGPSMRYCPAGVYEWHQNND----ENNYIIHAQNCIHCKACVIKDPNQNIEW 540 (554)
Q Consensus 465 ~~~h~~~qp~Hl~~~~~~~~~~~~~~~~~~p~~~~cpa~vye~~~~~~----~~~~~i~~~nc~hcktc~ik~p~~~i~w 540 (554)
..+.++|-|.+ .|.+-|... +-|+++||.||..+..+.. ...-++|++.|+-|+.|..-+|..-|.-
T Consensus 2 ~~~~p~n~pV~---Vde~~C~gC------~~Cv~~CP~~~l~m~~d~~~~~G~~~~vv~pe~CIgCG~Ce~~CPd~AI~V 72 (103)
T PRK09626 2 KMNAPDNTPVW---VDESRCKAC------DICVSYCPAGVLAMRIEPHAVLGKMIEVVYPESCIGCRECELHCPDFAIYV 72 (103)
T ss_pred CCCCCCCCCEE---ECCCCCCCC------CHHHHHCCHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCHHHHHCCHHHEEE
T ss_conf 87789898488---640107771------288887776564324564434565422168335838275755488232897
Q ss_pred ECCCCC
Q ss_conf 367988
Q gi|254781024|r 541 NPPQGG 546 (554)
Q Consensus 541 ~~p~gg 546 (554)
..-++=
T Consensus 73 a~r~~~ 78 (103)
T PRK09626 73 ADRKEF 78 (103)
T ss_pred ECCCCC
T ss_conf 404567
No 289
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.71 E-value=0.05 Score=32.99 Aligned_cols=32 Identities=22% Similarity=0.023 Sum_probs=23.9
Q ss_pred CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8879961232331366435226899999999999999
Q gi|254781024|r 322 PGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVE 358 (554)
Q Consensus 322 ~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~e 358 (554)
|++..+||..|..- =-|.|..-|..|+|.|..
T Consensus 471 ~hIYAIGDV~G~~m-----LAHvAs~EGi~ave~I~G 502 (673)
T PTZ00153 471 DHIFCIGDANGKQM-----LAHTASHQALKVIDFIEA 502 (673)
T ss_pred CCEEEEEECCCCCH-----HHHHHHHHHHHHHHHHCC
T ss_conf 78799985688525-----687999867999998725
No 290
>TIGR01810 betA choline dehydrogenase; InterPro: IPR011533 Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both Gram-positive and Gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti , this enzyme is found associated in a transcriptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other Gram-positive organisms have been shown to employ a different enzymatic system, utilising a soluble choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase . This enzyme is a member of the GMC oxidoreductase family, sharing a common evolutionary origin and enzymatic reaction with alcohol dehydrogenase . Out grouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. ; GO: 0008812 choline dehydrogenase activity, 0019285 glycine betaine biosynthetic process from choline.
Probab=96.70 E-value=0.0011 Score=44.48 Aligned_cols=36 Identities=39% Similarity=0.500 Sum_probs=30.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC-CCC
Q ss_conf 7799989768999999999808997399997867-789
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA-EVG 52 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~-~pG 52 (554)
|=||||+|-||++.|.+|..-+. -+|+|||-+. ..|
T Consensus 1 DyiIIG~GSAGsvLa~RLsED~~-nsVlvLEaGgsDy~ 37 (540)
T TIGR01810 1 DYIIIGAGSAGSVLATRLSEDVS-NSVLVLEAGGSDYR 37 (540)
T ss_pred CEEEECCCCHHHHHCCCCCCCCC-CCEEEEECCCCCCC
T ss_conf 95886377146661300013587-66799824788876
No 291
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=96.63 E-value=0.003 Score=41.44 Aligned_cols=56 Identities=21% Similarity=0.344 Sum_probs=44.3
Q ss_pred CCCHHCCHHHHCCHHHCCCCCEEEEEEECC---CC---EEEEEECCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 544001735417813213586006889659---97---056651566670475730068888625367
Q gi|254781024|r 482 DLQKKSELRIYSGPSMRYCPAGVYEWHQNN---DE---NNYIIHAQNCIHCKACVIKDPNQNIEWNPP 543 (554)
Q Consensus 482 ~~~~~~~~~~~~~p~~~~cpa~vye~~~~~---~~---~~~~i~~~nc~hcktc~ik~p~~~i~w~~p 543 (554)
+-|+.. +.|++.||+++-++.... +. ..+.||...|+.|+-|.-.+|..-|.||.=
T Consensus 58 ekCi~C------~lC~~~CP~~~I~i~~~~~~~g~k~~~~~~Id~~rCifCGlCve~CP~~AI~~t~~ 119 (172)
T PRK05888 58 ERCIAC------KLCEAICPANAITIEAAEREDGRRRTTRYDINFGRCIFCGFCEEACPTDAIVETPD 119 (172)
T ss_pred EECCCC------CCHHHHCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 403577------65565588776789875089985774577753460578888221088872447886
No 292
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.60 E-value=0.0021 Score=42.49 Aligned_cols=38 Identities=29% Similarity=0.523 Sum_probs=33.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC
Q ss_conf 47799989768999999999808997399997867789864
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI 55 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i 55 (554)
-+|.|||+|-||+|||+.|++.- +|.|+|.+...|.|.
T Consensus 9 ~~IAVIGsGisGLSAA~~Ls~rh---dVTLfEA~~rlGGha 46 (447)
T COG2907 9 RKIAVIGSGISGLSAAWLLSRRH---DVTLFEADRRLGGHA 46 (447)
T ss_pred CCEEEECCCCHHHHHHHHHHCCC---CEEEEECCCCCCCCC
T ss_conf 61689725620144577532355---247886066246753
No 293
>PRK02651 photosystem I subunit VII; Provisional
Probab=96.48 E-value=0.0015 Score=43.61 Aligned_cols=53 Identities=23% Similarity=0.397 Sum_probs=43.1
Q ss_pred CHHHCCCCCEEEEEEECCCCEEEEEE----CCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 81321358600688965997056651----566670475730068888625367988
Q gi|254781024|r 494 GPSMRYCPAGVYEWHQNNDENNYIIH----AQNCIHCKACVIKDPNQNIEWNPPQGG 546 (554)
Q Consensus 494 ~p~~~~cpa~vye~~~~~~~~~~~i~----~~nc~hcktc~ik~p~~~i~w~~p~gg 546 (554)
+.|++.||.+|-|++..++.+.-|+. ++.||-||-|.-.+|+..+.-.+=-|.
T Consensus 15 ~qCV~~CPt~VleMvp~~g~k~~q~~~~pR~edCIGCk~Ce~aCPtd~lsir~y~~~ 71 (81)
T PRK02651 15 TQCVRACPLDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRVYLGD 71 (81)
T ss_pred HHHHHHCCCCCEEECCCCCCCCCCCCCCCCHHHCCCHHHHHHCCCCCCEEEEEECCC
T ss_conf 566865887603642467761350225884543335144663089985047885175
No 294
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase; InterPro: IPR006324 These sequences represent glutathione reductases of plants and some bacteria, including cyanobacteria.; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=96.37 E-value=0.011 Score=37.46 Aligned_cols=164 Identities=20% Similarity=0.261 Sum_probs=89.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC----CCCCEECHHHHHHHCC-----------CHHHHCC
Q ss_conf 647799989768999999999808997399997867789864----0274033367888678-----------7264148
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI----LSGAIIDPIGIDSLLP-----------RWREDKG 78 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i----~sG~vl~p~aL~eL~P-----------d~~e~~g 78 (554)
|||.=|||||--|..||...|..|+ ||.+=|.-..|=+.- +.| +..++=..| .-.|+.
T Consensus 2 DyDLFVIGAGSGGvrAar~AA~~Ga--KVAiAE~~~hPisseeiGGvGG----TCViRGCVPKKl~VYaS~f~~~ledA- 74 (478)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAAALGA--KVAIAEEYRHPISSEEIGGVGG----TCVIRGCVPKKLMVYASEFAEELEDA- 74 (478)
T ss_pred CCCEEEEECCCHHHHHHHHHHHCCC--EEEEECCCCCCCCCCCCCCCCC----EEEEECCCCCEEEEECCCCHHHHHHH-
T ss_conf 7630687067166899999987299--0898215678735122377467----47882440750357212230233555-
Q ss_pred CCCCCEEEEEEEEEE-CCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEE
Q ss_conf 854322436699997-7997677365435654467882688888989999999987495330682243477627762014
Q gi|254781024|r 79 HPFHTVVKRDLYWFL-NAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALG 157 (554)
Q Consensus 79 ~pl~~~v~~d~~~~l-~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvg 157 (554)
..+-+- .++..|.|..+. +... ..-.+|...-.+.-+.+||+++.+-+- +.+.+ .|..
T Consensus 75 ---------~gYGW~i~e~~~f~W~~l~-----~~k~---~Ei~RL~~lY~~~L~~AGv~Ll~GrA~---~vd~~-tVev 133 (478)
T TIGR01424 75 ---------KGYGWTIVEKARFDWKKLL-----AKKD---KEIARLSGLYKKLLAKAGVELLEGRAE---LVDPN-TVEV 133 (478)
T ss_pred ---------HCCCCEEEECCCCCHHHHH-----HHHH---HHHHHHHHHHHHHHHHHCEEEEECCEE---EECCC-EEEE
T ss_conf ---------2488468721115778987-----6577---888866688899888533044304337---83681-5797
Q ss_pred EEECCCCCCCCCCCCCCCCCEE--EEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 5412432443466578756302--677425786066443255421122489988889899889888875165
Q gi|254781024|r 158 ILTGEKGKNYDGTQGKHYIAPM--LLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKP 227 (554)
Q Consensus 158 v~t~~~G~~k~~~~~~~~~~g~--~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~ 227 (554)
.. ++....+. .++|+-++.|-|-|.++.-.| ++ ..|++--.|.+.++.
T Consensus 134 ~~------------~dGsddg~ki~yTA~kIliA~Ggrps~kP~l-------PG---~ElgITSdEaf~L~~ 183 (478)
T TIGR01424 134 LE------------KDGSDDGKKITYTAKKILIAVGGRPSVKPEL-------PG---HELGITSDEAFHLPT 183 (478)
T ss_pred EE------------ECCCCCCCEEEEEEEEEEEEECCCCCCCCCC-------CC---CCCCCCCHHHCCCCC
T ss_conf 41------------0378788316787759999877878788885-------68---521304132417200
No 295
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.36 E-value=0.062 Score=32.34 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=30.5
Q ss_pred EEEECCCHHHHHHHHHHHHC-CCCCEEEEEECCCCC
Q ss_conf 79998976899999999980-899739999786778
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQI-NPHLSVVILEKSAEV 51 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~-g~~l~VlvlEK~~~p 51 (554)
|||||||-||+++|.+|++. ..+++|.|||+..+.
T Consensus 2 iVIvGgG~aG~~~a~~L~~~~~~~~~ItLId~~~~~ 37 (364)
T TIGR03169 2 LVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT 37 (364)
T ss_pred EEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
T ss_conf 999996099999999970417899839999998865
No 296
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=96.34 E-value=0.0025 Score=42.05 Aligned_cols=54 Identities=20% Similarity=0.383 Sum_probs=42.4
Q ss_pred CHHHCCCCCEEEEEEECCCCEEE----EEECCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 81321358600688965997056----6515666704757300688886253679888
Q gi|254781024|r 494 GPSMRYCPAGVYEWHQNNDENNY----IIHAQNCIHCKACVIKDPNQNIEWNPPQGGD 547 (554)
Q Consensus 494 ~p~~~~cpa~vye~~~~~~~~~~----~i~~~nc~hcktc~ik~p~~~i~w~~p~gg~ 547 (554)
+.|+|.||.+|-|++..++.+.- ..+.++||-||.|.-.+|+..+.-.+=.|..
T Consensus 14 ~~CvrvCPt~vieMVp~dg~~~~q~~~~~RtedCIGC~~CE~aCPtdaLsir~y~g~e 71 (80)
T TIGR03048 14 TQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGAE 71 (80)
T ss_pred HHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEECCCC
T ss_conf 4668658845145224666544645578861005562134430898731358841752
No 297
>PRK11749 putative oxidoreductase; Provisional
Probab=96.33 E-value=0.094 Score=31.08 Aligned_cols=41 Identities=29% Similarity=0.136 Sum_probs=32.4
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 4230887996123233136643522689999999999999987458
Q gi|254781024|r 318 KLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNG 363 (554)
Q Consensus 318 k~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g 363 (554)
++..+|+..+||+.. . -..+..||.+|+.||++|.+.|...
T Consensus 417 ~Ts~~gVFAaGD~~~---G--~~~vv~Ai~~Gr~AA~~I~~~L~G~ 457 (460)
T PRK11749 417 RTSLPGVFAGGDIVT---G--AATVVLAVGDGKDAAEAIHEYLEGA 457 (460)
T ss_pred CCCCCCEEEECCCCC---C--CHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 228999999458776---7--0599999999999999999985898
No 298
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.23 E-value=0.0048 Score=40.04 Aligned_cols=101 Identities=17% Similarity=0.226 Sum_probs=56.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC---CCCCC------CCCCCEECHHHHHHHCCCHH-HH--CCCC
Q ss_conf 3647799989768999999999808997399997867---78986------40274033367888678726-41--4885
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA---EVGAH------ILSGAIIDPIGIDSLLPRWR-ED--KGHP 80 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~---~pG~~------i~sG~vl~p~aL~eL~Pd~~-e~--~g~p 80 (554)
|+--|.|||||-|||-||+.+|+.| +.|.|.|-.. .|-.| .+|-..|...++.--..=.+ |+ .+.-
T Consensus 2 ~~~~i~VIGaGLAGSEAAwqiA~~G--v~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlLk~EMR~lgSl 79 (439)
T COG1206 2 MQQPINVIGAGLAGSEAAWQIAKRG--VPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLLKAEMRLLGSL 79 (439)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCCHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 8772589756544519999998769--83799970456689754456524302125546403444457889999972117
Q ss_pred CCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCC
Q ss_conf 4322436699997799767736543565446788268888898999999998749
Q gi|254781024|r 81 FHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALG 135 (554)
Q Consensus 81 l~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~G 135 (554)
+ +.....-++| -.|+..|+|..|-+.+-++.+..=
T Consensus 80 i-----------i~~Ad~~~VP---------AGgALAVDR~~Fs~~vT~~l~~hp 114 (439)
T COG1206 80 I-----------IEAADKHRVP---------AGGALAVDRDGFSQAVTEKLENHP 114 (439)
T ss_pred H-----------HHHHHHCCCC---------CCCEEEECHHHHHHHHHHHHHCCC
T ss_conf 8-----------6641540688---------876046617677899999985399
No 299
>PRK09898 hypothetical protein; Provisional
Probab=96.15 E-value=0.0042 Score=40.45 Aligned_cols=50 Identities=26% Similarity=0.561 Sum_probs=41.9
Q ss_pred CCHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 7813213586006889659970566515666704757300688886253679
Q gi|254781024|r 493 SGPSMRYCPAGVYEWHQNNDENNYIIHAQNCIHCKACVIKDPNQNIEWNPPQ 544 (554)
Q Consensus 493 ~~p~~~~cpa~vye~~~~~~~~~~~i~~~nc~hcktc~ik~p~~~i~w~~p~ 544 (554)
+-||.+.||.+...+ +...+...||...||.|+.|-..+|+..+.|.+..
T Consensus 128 ~p~C~~~CP~~Ai~~--~~~~G~v~~d~~~CigC~~C~~aCP~~~~~~~~~~ 177 (208)
T PRK09898 128 EPQCMNVCPIGAITW--QQKEGCITVDHKRCIGCSACTTACPWMMATVNTES 177 (208)
T ss_pred CCHHHHHCCCCCEEE--ECCCCEEEEEHHHCCCCCHHHHHCCCCCCEECCCC
T ss_conf 926888578576387--07997599877768041189973999985767888
No 300
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.11 E-value=0.12 Score=30.34 Aligned_cols=37 Identities=27% Similarity=0.178 Sum_probs=28.4
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 423088799612323313664352268999999999999998
Q gi|254781024|r 318 KLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVER 359 (554)
Q Consensus 318 k~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~ea 359 (554)
++..+|+...||+.-= | .=+=.||..|+.||++|+..
T Consensus 802 ~TS~pGVFAaGD~v~G--p---stVV~AIadGR~AA~aIl~~ 838 (1012)
T TIGR03315 802 ETNITNVFVIGDANRG--P---ATIVEAIADGRKAANAILSR 838 (1012)
T ss_pred CCCCCCEEEEECCCCC--H---HHHHHHHHHHHHHHHHHHHH
T ss_conf 7899998880066757--7---89999999999999999864
No 301
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase; InterPro: IPR014103 Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyses multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulphur bacterium Chlorobium tepidum..
Probab=96.08 E-value=0.011 Score=37.67 Aligned_cols=43 Identities=37% Similarity=0.587 Sum_probs=36.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEC
Q ss_conf 77999897689999999998089973999978677898640274033
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIID 62 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~ 62 (554)
.|.|||+|-||+++|+.|...| .+|-+.|...|.|.|+ |...+
T Consensus 1 ~vaivG~GlaGl~~av~l~d~G--~~v~~ye~r~f~GGkv--Gs~~d 43 (474)
T TIGR02732 1 KVAIVGAGLAGLATAVELVDAG--HEVEIYESRSFIGGKV--GSWVD 43 (474)
T ss_pred CEEEEECCHHHHHHHHHHHHCC--CEEEEEECCCCCCCCC--CEEEC
T ss_conf 9578725677899999997389--7278852433237520--00151
No 302
>PRK10330 electron transport protein HydN; Provisional
Probab=96.06 E-value=0.0082 Score=38.42 Aligned_cols=45 Identities=27% Similarity=0.625 Sum_probs=38.4
Q ss_pred CCHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 7813213586006889659970566515666704757300688886253
Q gi|254781024|r 493 SGPSMRYCPAGVYEWHQNNDENNYIIHAQNCIHCKACVIKDPNQNIEWN 541 (554)
Q Consensus 493 ~~p~~~~cpa~vye~~~~~~~~~~~i~~~nc~hcktc~ik~p~~~i~w~ 541 (554)
+.||.+.||.|.+ .++ ++...||.++||-|+.|-+.+|+..|.+.
T Consensus 63 ~p~C~~vCP~gAi--~k~--~G~V~vd~~~CiGC~~C~~ACPyga~~~~ 107 (181)
T PRK10330 63 DAPCANVCPNGAI--SRD--KGFVHVMQERCIGCKTCVVACPYGAMEVV 107 (181)
T ss_pred CCCHHHHCCCCCE--EEC--CCEEEECCCCCCCCCCHHHCCCCCCCCCC
T ss_conf 9733776877769--974--99599854729272930133999983504
No 303
>TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627 L-threonine 3-dehydrogenase (1.1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process.
Probab=95.90 E-value=0.012 Score=37.41 Aligned_cols=35 Identities=37% Similarity=0.619 Sum_probs=31.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 477999897689999999998089973999978677
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
-||+|+||||=|+.|+..++..|+ ..|++.|+.+|
T Consensus 163 ~~vlv~GaGPiGlma~AVAKa~GA-~~Vi~~d~ney 197 (341)
T TIGR00692 163 EDVLVIGAGPIGLMAVAVAKAAGA-RNVIVIDKNEY 197 (341)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCC-CEEEEECCCHH
T ss_conf 718998577478999999877278-40599658647
No 304
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=95.84 E-value=0.0058 Score=39.47 Aligned_cols=57 Identities=16% Similarity=0.332 Sum_probs=45.9
Q ss_pred CCCCCHHCCHHHHCCHHHCCCCCEEEEEEECC--CCEEEEEECCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 75544001735417813213586006889659--9705665156667047573006888862536
Q gi|254781024|r 480 DKDLQKKSELRIYSGPSMRYCPAGVYEWHQNN--DENNYIIHAQNCIHCKACVIKDPNQNIEWNP 542 (554)
Q Consensus 480 ~~~~~~~~~~~~~~~p~~~~cpa~vye~~~~~--~~~~~~i~~~nc~hcktc~ik~p~~~i~w~~ 542 (554)
|.+.|+. =+.|++.||++.-.+..+. +...+.||..-||.|+-|.=.+|..-|+.|.
T Consensus 36 d~ekCig------C~~C~~~CP~~AI~~~~~~~~~~~~~~id~~rCifCG~C~evCPt~AI~lt~ 94 (178)
T PRK12387 36 NPQQCIG------CAACVNACPSNALTVETDLATGELAWQFNLGRCIFCGRCEEVCPTAAIKLSQ 94 (178)
T ss_pred CCHHCCC------HHHHHHHCCCCCCEEEECCCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCH
T ss_conf 8311628------4799965863128754047788357886304066867156668824223361
No 305
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=95.78 E-value=0.026 Score=34.92 Aligned_cols=13 Identities=15% Similarity=0.059 Sum_probs=6.5
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 6889889999986
Q gi|254781024|r 274 PWISAYEELQRFK 286 (554)
Q Consensus 274 ~~~~~~~~lq~fk 286 (554)
+....+.+..+++
T Consensus 223 ~~S~V~klv~~~~ 235 (321)
T TIGR03478 223 EEGPVHKLVKRWK 235 (321)
T ss_pred CCCHHHHHHHHHH
T ss_conf 9887999999875
No 306
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=95.75 E-value=0.0059 Score=39.44 Aligned_cols=52 Identities=19% Similarity=0.318 Sum_probs=41.5
Q ss_pred CHHCCHHHHCCHHHCCCCCEEEEEEECCCC-------EEEEEECCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 400173541781321358600688965997-------0566515666704757300688886253
Q gi|254781024|r 484 QKKSELRIYSGPSMRYCPAGVYEWHQNNDE-------NNYIIHAQNCIHCKACVIKDPNQNIEWN 541 (554)
Q Consensus 484 ~~~~~~~~~~~p~~~~cpa~vye~~~~~~~-------~~~~i~~~nc~hcktc~ik~p~~~i~w~ 541 (554)
|+... .|.+.||+++-+++..... ..++||...||.|+-|.=.+|..-|.=|
T Consensus 57 CIgC~------lCa~iCP~~aI~m~~~~~~~~g~~~~~~~~In~grCIfCg~C~e~CPt~Al~~t 115 (172)
T COG1143 57 CIGCG------LCANICPANAITMETAERKVDGRKKPKRPDINLGRCIFCGLCVEVCPTGALVLT 115 (172)
T ss_pred CCCHH------HHHHHCCCCCEEEEECCCCCCCCCCCCCCEECCCCCCCCCCHHHHCCHHHHCCC
T ss_conf 82616------888639847318997656788842133431433512611751423966562277
No 307
>COG1146 Ferredoxin [Energy production and conversion]
Probab=95.59 E-value=0.011 Score=37.68 Aligned_cols=54 Identities=24% Similarity=0.589 Sum_probs=43.5
Q ss_pred CCHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 781321358600688965997056651566670475730068888625367988
Q gi|254781024|r 493 SGPSMRYCPAGVYEWHQNNDENNYIIHAQNCIHCKACVIKDPNQNIEWNPPQGG 546 (554)
Q Consensus 493 ~~p~~~~cpa~vye~~~~~~~~~~~i~~~nc~hcktc~ik~p~~~i~w~~p~gg 546 (554)
.+.|...||++|+.+.++.++..+.+|...|+-|+.|...+|.+-|.......+
T Consensus 13 c~~C~~~CP~~~~~~~~~~~~~~~~~~~e~C~~C~~C~~~CP~~aI~~~~~~~~ 66 (68)
T COG1146 13 CGICVEVCPAGVFDLGEDEGGKPVVARPEECIDCGLCELACPVGAIKVDILRPG 66 (68)
T ss_pred CCEEEEECCCCCEECCCCCCCCEEEECHHHCCCCCCHHHHCCCCEEEEECCCCC
T ss_conf 984277288760883222577168876466865561344488677997335567
No 308
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.56 E-value=0.026 Score=34.95 Aligned_cols=35 Identities=29% Similarity=0.543 Sum_probs=30.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 77999897689999999998089973999978677
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
-|||||||=+|+.+|.+|++.-.+.+|.|+||..+
T Consensus 5 ~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~ 39 (405)
T COG1252 5 RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY 39 (405)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 69998986799999997641678871899918876
No 309
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=95.54 E-value=0.011 Score=37.63 Aligned_cols=51 Identities=20% Similarity=0.501 Sum_probs=41.4
Q ss_pred CCHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 781321358600688965997056651566670475730068888625367988
Q gi|254781024|r 493 SGPSMRYCPAGVYEWHQNNDENNYIIHAQNCIHCKACVIKDPNQNIEWNPPQGG 546 (554)
Q Consensus 493 ~~p~~~~cpa~vye~~~~~~~~~~~i~~~nc~hcktc~ik~p~~~i~w~~p~gg 546 (554)
+-||++.||.|.. ..+.+.+...||...||-|+.|-+.+|++.+.|. |+.+
T Consensus 99 ~p~C~~vCP~~A~--~k~~~~GiV~vd~~~CiGC~~C~~aCPy~a~~~~-~~~~ 149 (225)
T TIGR03149 99 NAPCVAVCPTGAS--FKDEETGIVDVHKDLCVGCQYCIAACPYRVRFIH-PVTK 149 (225)
T ss_pred CCHHHHHCCCCCE--EECCCCCEEEEEHHHCCCHHHHHHCCCCCCCEEC-CCCC
T ss_conf 9455755885841--7768885799756869404189861999983548-8889
No 310
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=95.45 E-value=0.0027 Score=41.75 Aligned_cols=44 Identities=23% Similarity=0.514 Sum_probs=32.2
Q ss_pred CHHHCCCCCEEE-----EEEECCCCEEE-EEECCCCCCCCCCCCCCCCCC
Q ss_conf 813213586006-----88965997056-651566670475730068888
Q gi|254781024|r 494 GPSMRYCPAGVY-----EWHQNNDENNY-IIHAQNCIHCKACVIKDPNQN 537 (554)
Q Consensus 494 ~p~~~~cpa~vy-----e~~~~~~~~~~-~i~~~nc~hcktc~ik~p~~~ 537 (554)
|-|...||++-. -+....+-.+. ..|--+||+|+.|.-.||+..
T Consensus 382 G~Cv~aCP~~LlPqqL~w~ak~~~~dka~~~~l~DCIECG~CaYVCPS~I 431 (725)
T PRK05035 382 GACADACPASLLPQQLYWFAKAEEHDKAEEHNLFDCIECGACAYVCPSNI 431 (725)
T ss_pred CHHHHHCCCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCEECCCCC
T ss_conf 13676389977799999998767799998679963600287762689888
No 311
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=95.43 E-value=0.071 Score=31.92 Aligned_cols=27 Identities=22% Similarity=0.485 Sum_probs=22.7
Q ss_pred HHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 999999980899739999786778986
Q gi|254781024|r 28 AAAIRCKQINPHLSVVILEKSAEVGAH 54 (554)
Q Consensus 28 saA~~La~~g~~l~VlvlEK~~~pG~~ 54 (554)
|||.+|+|+.++.+|.||||+..+.+-
T Consensus 1 saA~~~rrl~p~~eI~vi~~~~~~~y~ 27 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFA 27 (427)
T ss_pred CHHHHHHHHCCCCCEEEEECCCCCCCH
T ss_conf 977988843989978999679986435
No 312
>CHL00065 psaC photosystem I subunit VII
Probab=95.41 E-value=0.0085 Score=38.34 Aligned_cols=54 Identities=20% Similarity=0.383 Sum_probs=43.1
Q ss_pred CHHHCCCCCEEEEEEECCCCEE----EEEECCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 8132135860068896599705----66515666704757300688886253679888
Q gi|254781024|r 494 GPSMRYCPAGVYEWHQNNDENN----YIIHAQNCIHCKACVIKDPNQNIEWNPPQGGD 547 (554)
Q Consensus 494 ~p~~~~cpa~vye~~~~~~~~~----~~i~~~nc~hcktc~ik~p~~~i~w~~p~gg~ 547 (554)
+.|+|+||..|-|++.-++.+. ..+..+.|+.|+-|.-.+|+..+.-.+=+|+.
T Consensus 15 ~~Cvr~CP~dviemvp~dg~k~~q~~~~~R~EdCiGC~~Ce~aCPtdalS~r~~~g~e 72 (81)
T CHL00065 15 TQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGHE 72 (81)
T ss_pred HHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCH
T ss_conf 7898868830100123445554533566761327666535355899861689961731
No 313
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.39 E-value=0.035 Score=34.05 Aligned_cols=52 Identities=25% Similarity=0.471 Sum_probs=42.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC---------CCCCCCCCCEECHHHHHHH
Q ss_conf 77999897689999999998089973999978677---------8986402740333678886
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE---------VGAHILSGAIIDPIGIDSL 69 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~---------pG~~i~sG~vl~p~aL~eL 69 (554)
.++|||+|.-|.+.|..|.+.|. .|+++|+..+ ...+.+.|...++.+|.++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~--~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~a 62 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH--NVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEA 62 (225)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHCCCEEEEEECCCCHHHHHHC
T ss_conf 89998985788999999987899--08999768899998632000449999268898999867
No 314
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=95.37 E-value=0.013 Score=37.10 Aligned_cols=57 Identities=18% Similarity=0.350 Sum_probs=44.9
Q ss_pred CCCCCHHCCHHHHCCHHHCCCCCEEEEEEEC--CCCEEEEEECCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 7554400173541781321358600688965--99705665156667047573006888862536
Q gi|254781024|r 480 DKDLQKKSELRIYSGPSMRYCPAGVYEWHQN--NDENNYIIHAQNCIHCKACVIKDPNQNIEWNP 542 (554)
Q Consensus 480 ~~~~~~~~~~~~~~~p~~~~cpa~vye~~~~--~~~~~~~i~~~nc~hcktc~ik~p~~~i~w~~ 542 (554)
|.+.|+.. +.|++.||+++-.+..+ .+...+.||..-||.|+-|.=.+|...|.-|.
T Consensus 36 d~ekCIgC------~~C~~~CP~~AI~~~~d~~~~~r~~~id~grCIfCG~C~EvCPt~AI~lt~ 94 (181)
T PRK08222 36 MPSQCIAC------GACACACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTN 94 (181)
T ss_pred CHHHCCCH------HHHHHHCCCCCCEEEECCCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCC
T ss_conf 81018453------289875860266876226788568885266167877244148814206776
No 315
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=95.28 E-value=0.014 Score=36.91 Aligned_cols=52 Identities=23% Similarity=0.475 Sum_probs=42.0
Q ss_pred CHHHHCCHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 73541781321358600688965997056651566670475730068888625367
Q gi|254781024|r 488 ELRIYSGPSMRYCPAGVYEWHQNNDENNYIIHAQNCIHCKACVIKDPNQNIEWNPP 543 (554)
Q Consensus 488 ~~~~~~~p~~~~cpa~vye~~~~~~~~~~~i~~~nc~hcktc~ik~p~~~i~w~~p 543 (554)
|.---+.||.+-||++.-.. + +...++|.|.||-||+|-+.+|+..|+-..-
T Consensus 53 C~qCedaPC~~vCP~~AI~~--~--~~~v~V~~ekCiGC~~C~~aCPfGai~~~~~ 104 (165)
T COG1142 53 CHHCEDAPCAEVCPVGAITR--D--DGAVQVDEEKCIGCKLCVVACPFGAITMVSY 104 (165)
T ss_pred CCCCCCCCHHHHCCHHHEEC--C--CCCEEECCCCCCCCCHHHHCCCCCEEEEEEE
T ss_conf 88899963566595423041--5--8965871221658524664098644999850
No 316
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=95.24 E-value=0.033 Score=34.26 Aligned_cols=104 Identities=16% Similarity=0.138 Sum_probs=63.4
Q ss_pred HHCCC-CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEE
Q ss_conf 01036-47799989768999999999808997399997867789864027403336788867872641488543224366
Q gi|254781024|r 10 KDVFE-YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRD 88 (554)
Q Consensus 10 re~me-yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d 88 (554)
+++.+ -||||||||=-|+=|--.-.|+|. .||+-+|.-+.| | + +
T Consensus 303 ~I~akGK~VvvIGGGDTG~DCvGTs~RhGA-~sV~qFE~mP~P-----------P--------~---------~------ 347 (517)
T TIGR01317 303 FIKAKGKKVVVIGGGDTGADCVGTSLRHGA-ASVHQFEIMPKP-----------P--------E---------E------ 347 (517)
T ss_pred CEEECCCEEEEECCCCCCCHHHHHHHHHHH-HHHHHCCCCCCC-----------C--------H---------H------
T ss_conf 354228678997578756224563235543-552302568887-----------7--------6---------7------
Q ss_pred EEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECC-CCEEEEEEECCCCCEEEEEECCCCCCC
Q ss_conf 9999779976773654356544678826888889899999999874953306-822434776277620145412432443
Q gi|254781024|r 89 LYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYC-GFTATEIYYGKKGEALGILTGEKGKNY 167 (554)
Q Consensus 89 ~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~-g~~v~~i~~~e~g~vvgv~t~~~G~~k 167 (554)
......||.| |..+ ++|.--.|.++..|-+.+. -...++++=+++|+|..|+|-+.--.|
T Consensus 348 ------Ra~~npWP~w--P~v~-----------r~~y~hEE~~a~~GrDpRey~i~t~~f~G~d~G~V~a~rTv~V~~~K 408 (517)
T TIGR01317 348 ------RAKDNPWPEW--PKVY-----------RVDYAHEEVKAKYGRDPREYSIATKEFVGDDEGKVKAVRTVRVEMKK 408 (517)
T ss_pred ------HCCCCCCCCC--CCEE-----------EECHHHHHHHHCCCCCCHHHHCCCEEEEECCCCEEEEEEEEEEEEEE
T ss_conf ------7278648657--5113-----------30266898985179560123100133567688448788889999987
No 317
>PRK13409 putative ATPase RIL; Provisional
Probab=95.18 E-value=0.022 Score=35.45 Aligned_cols=15 Identities=7% Similarity=-0.071 Sum_probs=7.5
Q ss_pred EEEEEEEEEECCCCC
Q ss_conf 243669999779976
Q gi|254781024|r 84 VVKRDLYWFLNAQRS 98 (554)
Q Consensus 84 ~v~~d~~~~l~~~~~ 98 (554)
+-..+.+-++.+|++
T Consensus 96 p~~G~v~GLiG~NGa 110 (590)
T PRK13409 96 PKEGKVTGILGPNGI 110 (590)
T ss_pred CCCCCEEEEECCCCC
T ss_conf 999878998899999
No 318
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=95.17 E-value=0.046 Score=33.24 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=13.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 643522689999999999999987
Q gi|254781024|r 337 LRIKGSHNAIISGMLAAEKIVERL 360 (554)
Q Consensus 337 ~~g~GI~~Am~SG~lAAEai~eal 360 (554)
.+.+.|...+..||+|-=+++.+|
T Consensus 285 ~~se~~qh~ly~~~i~p~~~~~~l 308 (329)
T PRK10882 285 ARSEHIQHTLYKGMILPLALLAGL 308 (329)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 311556653410038799999999
No 319
>TIGR00136 gidA glucose-inhibited division protein A; InterPro: IPR004416 Glucose-inhibited division protein A, GidA appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. The function of these proteins is unknown..
Probab=94.96 E-value=0.028 Score=34.68 Aligned_cols=146 Identities=19% Similarity=0.326 Sum_probs=70.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC-CCCCCCC---CCCEECHHHHHHHCCCHHHHCCCCCCCEEEE--E
Q ss_conf 47799989768999999999808997399997867-7898640---2740333678886787264148854322436--6
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA-EVGAHIL---SGAIIDPIGIDSLLPRWREDKGHPFHTVVKR--D 88 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~-~pG~~i~---sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~--d 88 (554)
|||+|||+|-||+-+|...++.| .+++++--.- .+|.-.| -|+.-.....+|+ +..+.-....+.. -
T Consensus 1 ~~~~~~g~gh~g~e~~~~~~~~g--~~~~~~~~~~~~~g~~~cnp~~gg~~~g~~~~e~-----d~lgg~~g~~~d~~~~ 73 (630)
T TIGR00136 1 FDVIVIGGGHAGLEAALAAARLG--AKTLLLTLNLDTLGKCPCNPAIGGPGKGILVKEI-----DALGGLMGKAADKTGL 73 (630)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC--CEEEEEEECHHHHHCCCCCCCCCCCCCCCHHHHH-----HHHHHHHHHHHHHHHH
T ss_conf 90688617620035677765417--5134554041222025566444653234100023-----3420146665534444
Q ss_pred EEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHC----CCEECCCCEEEEEEECC----CCCEEEEEE
Q ss_conf 9999779976773654356544678826888889899999999874----95330682243477627----762014541
Q gi|254781024|r 89 LYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEAL----GVEIYCGFTATEIYYGK----KGEALGILT 160 (554)
Q Consensus 89 ~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~----Gvei~~g~~v~~i~~~e----~g~vvgv~t 160 (554)
.+..++.... | .... ..-.+++..+..|+....+.. ...++.+... +++..+ ++.+.|+.+
T Consensus 74 ~~~~ln~~~g--------p-~~~~-~~~~~d~~~y~~~~~~~~~~~~~~pn~~~~~~~~~-~~~~~~~gcg~~~~~g~~~ 142 (630)
T TIGR00136 74 QFRLLNSSKG--------P-AVRA-LRAQIDKLLYRKWAKNTLENQKAHPNLSLLQGEVE-DLLLEDPGCGNDEVKGVVT 142 (630)
T ss_pred HHHHHHCCCC--------C-CCCH-HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH-HHHHHCCCCCCCCEEEEEE
T ss_conf 4443204566--------4-1000-24566689999999988753114653356676777-7764046888651246653
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCC
Q ss_conf 243244346657875630267742578606644
Q gi|254781024|r 161 GEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGAC 193 (554)
Q Consensus 161 ~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~ 193 (554)
.+ |..++++.+|...|..
T Consensus 143 ~~---------------g~~~~~~~~~~~~g~~ 160 (630)
T TIGR00136 143 KD---------------GAEFRAKAVVLTTGTF 160 (630)
T ss_pred EC---------------CCCCCCCEEEEEECCC
T ss_conf 04---------------6300023256740410
No 320
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=94.86 E-value=0.32 Score=27.41 Aligned_cols=37 Identities=19% Similarity=0.127 Sum_probs=28.6
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 423088799612323313664352268999999999999998
Q gi|254781024|r 318 KLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVER 359 (554)
Q Consensus 318 k~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~ea 359 (554)
++..+|+...||+.-= | .=+-.||..|+.||++|...
T Consensus 815 ~TS~pGVFAaGD~v~G--p---STVV~AIadGRkAA~aIl~~ 851 (1032)
T PRK09853 815 ETNLTNVFMIGDVQRG--P---SSIVAAIADARRATDAILSR 851 (1032)
T ss_pred CCCCCCEEECCCCCCC--H---HHHHHHHHHHHHHHHHHHHH
T ss_conf 8789997773076767--7---89999999999999999853
No 321
>PRK04965 nitric oxide reductase; Provisional
Probab=94.86 E-value=0.053 Score=32.80 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=24.1
Q ss_pred HHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHH
Q ss_conf 99987495330682243477627762014541243244346657875630267742578606644325
Q gi|254781024|r 129 NKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSL 196 (554)
Q Consensus 129 ~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~l 196 (554)
+.+++.+++++.+++|..+-. +.+.+ .++ +.++.-+.+|.|.|++...
T Consensus 66 ~~~~~~~I~l~~~~~V~~ID~--~~k~V--~~~----------------g~~~~YDkLVLATGa~p~~ 113 (378)
T PRK04965 66 EFAEQFNLRLFPHTWVTDIDA--EAQVV--KSQ----------------GNQWQYDKLVLATGASAFV 113 (378)
T ss_pred HHHHHCCEEEECCCEEEEECC--CCCEE--EEC----------------CCEEECCEEEEECCCCCCC
T ss_conf 998748979986989999846--46379--958----------------9198468799935887557
No 322
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=94.74 E-value=0.033 Score=34.22 Aligned_cols=106 Identities=16% Similarity=0.166 Sum_probs=50.5
Q ss_pred HHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH----
Q ss_conf 9860800456503882630351340054212487423088799612323313664352268999999999999998----
Q gi|254781024|r 284 RFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVER---- 359 (554)
Q Consensus 284 ~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~ea---- 359 (554)
+|..++.-..... ...++|.......|+|+- -+.+|-+--|+--|++-| .||...-.-.+||+.-=-+.
T Consensus 327 ~F~~~~~~~~~~~-~~lv~y~~~~k~~g~F~L---~V~~G~i~~gEvigilGp---NgiGKTTFvk~LAG~ikPdeg~~~ 399 (591)
T COG1245 327 EFEEKPPRDDKAR-DTLVEYPDLKKTYGDFKL---EVEEGEIYDGEVIGILGP---NGIGKTTFVKLLAGVIKPDEGSEE 399 (591)
T ss_pred EEECCCCCCCCCC-CEEEECCHHEEECCCEEE---EECCCEEECCEEEEEECC---CCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 4414686443100-306621002010376589---953874633548999888---875467799998566257878876
Q ss_pred ----------H---HCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----------7---45886530367-8998642046678887422566887
Q gi|254781024|r 360 ----------L---SNGKKHDDPIE-IEDSWRQTQIGKDLWIIRNIKPLLS 396 (554)
Q Consensus 360 ----------l---~~g~~~~~l~~-Ye~~~~~s~~~~el~~~rn~~~~~~ 396 (554)
+ ..+...+.|.. -..+|..||...|+-+-=|+-..+.
T Consensus 400 ~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e 450 (591)
T COG1245 400 DLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLE 450 (591)
T ss_pred CCEEECCCEEECCCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHH
T ss_conf 514750553403789982999998743000145056776407446477874
No 323
>PRK07118 ferredoxin; Validated
Probab=94.74 E-value=0.0087 Score=38.26 Aligned_cols=47 Identities=28% Similarity=0.523 Sum_probs=40.0
Q ss_pred CHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 813213586006889659970566515666704757300688886253679
Q gi|254781024|r 494 GPSMRYCPAGVYEWHQNNDENNYIIHAQNCIHCKACVIKDPNQNIEWNPPQ 544 (554)
Q Consensus 494 ~p~~~~cpa~vye~~~~~~~~~~~i~~~nc~hcktc~ik~p~~~i~w~~p~ 544 (554)
+.|++.||.+..++. +....||..+|+-|++|..|+|+.-|.|+-..
T Consensus 219 ~~C~k~CP~~AI~ie----~~lavID~~kC~~CG~Cv~~CPt~aI~~~~~~ 265 (276)
T PRK07118 219 GKCVKACPAEAITVE----NNLAVIDQEKCTSCGKCVEKCPTKAIRALNKP 265 (276)
T ss_pred HHHHHHCCCCCEEEE----CCEEEECHHHCCHHHHHHHHCCHHHHHHCCCC
T ss_conf 788875882649976----99688784548646699876862452443589
No 324
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=94.72 E-value=0.062 Score=32.31 Aligned_cols=40 Identities=20% Similarity=-0.052 Sum_probs=29.0
Q ss_pred CCCCCCEEEECCCCCCCCCC----CCCCHHHHHHHHHHHHHHHH
Q ss_conf 42308879961232331366----43522689999999999999
Q gi|254781024|r 318 KLSFPGGSLIGCAAGFVNLL----RIKGSHNAIISGMLAAEKIV 357 (554)
Q Consensus 318 k~~~~g~lLvGDAAG~vnP~----~g~GI~~Am~SG~lAAEai~ 357 (554)
++..|++..+||.|-+-+|. +.+-..+|+..|+.||..+.
T Consensus 264 ~Ts~p~IyAaGDvA~~~~~~g~~~r~e~w~~A~~qg~~aa~nm~ 307 (400)
T PRK09754 264 RTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAML 307 (400)
T ss_pred CCCCCCEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHC
T ss_conf 64898999995520354888888772365788899999999842
No 325
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=94.64 E-value=0.029 Score=34.67 Aligned_cols=58 Identities=24% Similarity=0.351 Sum_probs=42.9
Q ss_pred CCCHHCCHHHHCCHHHCCCCCEEEEEEE--CCC-C----EEEEEECCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 5440017354178132135860068896--599-7----05665156667047573006888862536798
Q gi|254781024|r 482 DLQKKSELRIYSGPSMRYCPAGVYEWHQ--NND-E----NNYIIHAQNCIHCKACVIKDPNQNIEWNPPQG 545 (554)
Q Consensus 482 ~~~~~~~~~~~~~p~~~~cpa~vye~~~--~~~-~----~~~~i~~~nc~hcktc~ik~p~~~i~w~~p~g 545 (554)
+-|+.. +.|+|.||+.+-.+.. ..+ . ..+.||..-|+-|+-|.-.+|..-|.||.-..
T Consensus 62 dkCI~C------~~C~~vCP~~~i~Vd~~~~~~~~kK~~~~y~ID~grCIFCG~CvEaCPtdAI~mT~EyE 126 (173)
T CHL00014 62 DKCIAC------EVCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYE 126 (173)
T ss_pred CCCCCH------HHHHHHCCCCCEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 117244------36986597776163355678888501146775616213036711017868033567554
No 326
>PRK06370 mercuric reductase; Validated
Probab=94.58 E-value=0.22 Score=28.49 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=17.5
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 230887996123233136643522689999999999999
Q gi|254781024|r 319 LSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIV 357 (554)
Q Consensus 319 ~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~ 357 (554)
+.-||+..+||..|.. +++ |.|+.-|++||+.++
T Consensus 298 Ts~p~IyA~GDv~g~~-~la----h~A~~eg~~a~~n~~ 331 (459)
T PRK06370 298 TTNPGIYAAGDCNGRG-AFT----HTAYNDAEIVAANLL 331 (459)
T ss_pred ECCCCEEEEECCCCCC-CCC----CHHHHHHHHHHHHHH
T ss_conf 3787449831146886-774----589999999999983
No 327
>KOG4405 consensus
Probab=94.53 E-value=0.052 Score=32.89 Aligned_cols=40 Identities=33% Similarity=0.504 Sum_probs=35.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC
Q ss_conf 647799989768999999999808997399997867789864
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI 55 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i 55 (554)
+|||||||-|-.-+..|...+|.| .+|+-||..++=|.+-
T Consensus 8 ~fDvVViGTGlpESilAAAcSrsG--~sVLHlDsn~yYGg~w 47 (547)
T KOG4405 8 EFDVVVIGTGLPESILAAACSRSG--SSVLHLDSNEYYGGNW 47 (547)
T ss_pred HCCEEEECCCCCHHHHHHHHHHCC--CCEEECCCCCCCCCCC
T ss_conf 343899817984899999860037--7058606865557764
No 328
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.50 E-value=0.072 Score=31.86 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=12.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 425786066443255421122489
Q gi|254781024|r 183 SKYMLVGEGACGSLTRQLIERYSL 206 (554)
Q Consensus 183 Ak~vI~AdG~~s~lak~l~~~~~l 206 (554)
-+++|..-|+.|.-+---..+.+|
T Consensus 213 YDviIIGgGPAGlsAAIYaaR~gl 236 (515)
T TIGR03140 213 YDVLVVGGGPAGAAAAIYAARKGL 236 (515)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC
T ss_conf 888998967899999999997799
No 329
>PTZ00318 NADH dehydrogenase; Provisional
Probab=94.50 E-value=0.045 Score=33.30 Aligned_cols=49 Identities=16% Similarity=0.095 Sum_probs=35.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC----CCCCCCCCCEECHHH
Q ss_conf 477999897689999999998089973999978677----898640274033367
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE----VGAHILSGAIIDPIG 65 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~----pG~~i~sG~vl~p~a 65 (554)
--|||||||=||+++|..|.+.. .+|.||++..+ |=-+-+..+.++++.
T Consensus 11 prVVIlGgGfaGl~~ak~L~~~~--~~VtLVdp~ny~lF~PLL~qvAtGtLe~r~ 63 (514)
T PTZ00318 11 PNVVVVGTGWAGCYFARHLNPKL--ANLHVLSTRNHMVFTPLLPQTTTGTLEFRS 63 (514)
T ss_pred CEEEEECCCHHHHHHHHHHCCCC--CCEEEECCCCCCCCCHHHHHHHHCCCCHHH
T ss_conf 85899997699999999738689--828999999985010216766205777577
No 330
>TIGR02731 phytoene_desat phytoene desaturase; InterPro: IPR014102 Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme phytoene desaturase (also called phytoene dehydrogenase). This HMM does not include plant chloroplast transit peptides and the entry does not contain zeta-carotene desaturase, which is a closely related family in the same pathway..
Probab=94.43 E-value=0.051 Score=32.91 Aligned_cols=36 Identities=33% Similarity=0.471 Sum_probs=30.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 79998976899999999980899739999786778986
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAH 54 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~ 54 (554)
|+|.|||-||+++|.+|+.+|+ .-+|+|+..-.|.+
T Consensus 2 v~~aGaGlaGl~~akyl~daGh--~Pi~~e~~~vlGG~ 37 (454)
T TIGR02731 2 VAIAGAGLAGLSCAKYLADAGH--TPIVLEARDVLGGK 37 (454)
T ss_pred EEEECCCHHHHHHHHHHHHCCC--CCEEEECHHHCCCC
T ss_conf 5772274556778878763589--62686321003550
No 331
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=94.41 E-value=0.088 Score=31.27 Aligned_cols=33 Identities=6% Similarity=0.049 Sum_probs=16.9
Q ss_pred CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 30887996123233136643522689999999999999
Q gi|254781024|r 320 SFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIV 357 (554)
Q Consensus 320 ~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~ 357 (554)
..+++..+||..|-.. + .|.|+..|+++++.++
T Consensus 283 s~~~IyA~GDv~g~~~-l----ah~A~~e~~~~~~~i~ 315 (441)
T PRK08010 283 TADNIWAMGDVTGGLQ-F----TYISLDDYRIVRDELL 315 (441)
T ss_pred CCCCEEEEECCCCCCC-C----HHHHHHHHHHHHHHHH
T ss_conf 8876899702689867-6----3689999999999983
No 332
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=94.39 E-value=0.071 Score=31.90 Aligned_cols=101 Identities=24% Similarity=0.376 Sum_probs=70.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEEEC
Q ss_conf 47799989768999999999808997399997867789864027403336788867872641488543224366999977
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFLN 94 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~l~ 94 (554)
-+|+|||+||+|+.+|..|++.| ++|.++|+...++... +
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G--~~v~l~e~~~~~~~~~-----~--------------------------------- 176 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRG--KKVTLIEAADRLGGQL-----L--------------------------------- 176 (415)
T ss_pred CEEEEECCHHHHHHHHHHHHHCC--CEEEEEECCCCCCCCC-----C---------------------------------
T ss_conf 73999893499999999998779--9389997566423311-----2---------------------------------
Q ss_pred CCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEE-EEECCCCCCCCCCCCC
Q ss_conf 997677365435654467882688888989999999987495330682243477627762014-5412432443466578
Q gi|254781024|r 95 AQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALG-ILTGEKGKNYDGTQGK 173 (554)
Q Consensus 95 ~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvg-v~t~~~G~~k~~~~~~ 173 (554)
. ..+-..+.+.-+..|++++.++.+.++...++..... +..
T Consensus 177 ------------------------~-~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~~~~~------------- 218 (415)
T COG0446 177 ------------------------D-PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVG------------- 218 (415)
T ss_pred ------------------------C-HHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCEEEEEEEE-------------
T ss_conf ------------------------1-88999999999972948982652699992586215544566-------------
Q ss_pred CCCCEEEEEEEEEEEECCCCCH
Q ss_conf 7563026774257860664432
Q gi|254781024|r 174 HYIAPMLLLSKYMLVGEGACGS 195 (554)
Q Consensus 174 ~~~~g~~i~Ak~vI~AdG~~s~ 195 (554)
..+..+.++.++.+.|.+..
T Consensus 219 --~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 219 --IDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred --EEEEEECCCEEEECCCCCCC
T ss_conf --53035223369878975776
No 333
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=94.37 E-value=0.079 Score=31.61 Aligned_cols=50 Identities=26% Similarity=0.442 Sum_probs=40.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC-------CCCCCCCCCCEECHHHHHHH
Q ss_conf 799989768999999999808997399997867-------78986402740333678886
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA-------EVGAHILSGAIIDPIGIDSL 69 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~-------~pG~~i~sG~vl~p~aL~eL 69 (554)
|+|+|.|.-|...|..|.+.| .|+++|+.+ .-|.+.+.|...++..|+++
T Consensus 1 viI~G~g~~G~~la~~L~~~~---~v~vId~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a 57 (115)
T pfam02254 1 IIIIGYGRVGRSLAEELREGG---PVVVIDKDPERVEELREEGVPVVVGDATDEEVLEEA 57 (115)
T ss_pred CEEECCCHHHHHHHHHHHHCC---CEEEEECCHHHHHHHHHCCCEEEEEECCCHHHHHHH
T ss_conf 999878889999999998089---999999987998778866986999956886678761
No 334
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.091 Score=31.17 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=35.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 64779998976899999999980899739999786778986
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAH 54 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~ 54 (554)
+|||+|+|-|---|..+..|+..|+ +|++|||..+=|+-
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k--~VlhiD~Nd~YG~~ 44 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGK--NVLHIDKNDYYGST 44 (434)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC--EEEEEECCCCCCCC
T ss_conf 0018996266899999888622675--17997078766753
No 335
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=94.28 E-value=0.02 Score=35.69 Aligned_cols=54 Identities=22% Similarity=0.480 Sum_probs=42.6
Q ss_pred CCEE--EEECCCCCHHCCHHHHCCHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 6217--961755440017354178132135860068896599705665156667047573006888
Q gi|254781024|r 473 PMHL--LIKDKDLQKKSELRIYSGPSMRYCPAGVYEWHQNNDENNYIIHAQNCIHCKACVIKDPNQ 536 (554)
Q Consensus 473 p~Hl--~~~~~~~~~~~~~~~~~~p~~~~cpa~vye~~~~~~~~~~~i~~~nc~hcktc~ik~p~~ 536 (554)
-|-| ++-++++|+-. |.|...||.+.-++++ .+..||.+.|+-|++|-..+|.-
T Consensus 163 gcdl~~~vin~~LC~GC------g~Ca~~Cp~~AI~~~~----gkp~i~~~~Ci~CG~C~~~CPr~ 218 (228)
T TIGR03294 163 GCDLMTKVVNQGLCMGC------GTCAAACPTRAIEMED----GRPNVNRDRCIKCGACYVQCPRA 218 (228)
T ss_pred CCHHHHHCCCCCCCCCC------HHHHHHCCCCCCEEEC----CCEEECHHHCCCCCCCCCCCCCC
T ss_conf 75037752463216781------5778548857625653----83677632277677441219764
No 336
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.12 E-value=0.23 Score=28.43 Aligned_cols=40 Identities=50% Similarity=0.676 Sum_probs=36.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 364779998976899999999980899739999786778986
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAH 54 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~ 54 (554)
+.|||||||||++||+||.+|||+| ++|+||||...+|..
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G--~~V~VlE~~~~~GG~ 41 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAG--LKVTVLEKNDRVGGR 41 (487)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCC
T ss_conf 9762999898878999999999689--979999637888772
No 337
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.09 E-value=0.11 Score=30.69 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=30.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 64779998976899999999980899739999786778
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEV 51 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~p 51 (554)
.--|+|+|.|-+|.++|..|.+.| .+|.+.|....|
T Consensus 7 ~k~vlV~GlG~sG~a~a~~L~~~G--~~V~~~D~~~~~ 42 (501)
T PRK02006 7 RPMVLVLGLGESGLAMARWCARHG--CRLRVADTREAP 42 (501)
T ss_pred CCEEEEEEECHHHHHHHHHHHHCC--CEEEEEECCCCC
T ss_conf 983999833688999999999789--849999899998
No 338
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.08 E-value=0.098 Score=30.96 Aligned_cols=59 Identities=19% Similarity=0.248 Sum_probs=24.8
Q ss_pred HHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHH
Q ss_conf 99999987495330682243477627762014541243244346657875630267742578606644325
Q gi|254781024|r 126 WLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSL 196 (554)
Q Consensus 126 ~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~l 196 (554)
.|.+..++.|++++.++.+..+..++++..+.+...+.| ...++.++.++.|-|.+..+
T Consensus 218 ~l~~~l~~~Gi~i~~~~~v~~i~~~~~~~~v~~~~~~~g------------~~~~i~~d~vlva~Gr~Pn~ 276 (467)
T PRK07818 218 EIEKQYKKLGVKILTGTKVESIRDNGDGVEVTVTVSKDG------------KSEELKADKVLQAIGFAPNV 276 (467)
T ss_pred HHHHHHHHCCCEEECCCEEEEEEECCCEEEEEEEECCCC------------CEEEEEEEEEEECCCCCCCC
T ss_conf 999999866988855976899998499399999988899------------46999952589811675044
No 339
>KOG2755 consensus
Probab=93.82 E-value=0.044 Score=33.36 Aligned_cols=36 Identities=25% Similarity=0.526 Sum_probs=32.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 799989768999999999808997399997867789
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG 52 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG 52 (554)
-+|||||-||.+||-.||++-+..+|++|-..+++-
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vk 37 (334)
T KOG2755 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVK 37 (334)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf 599857614325899997538887389996417888
No 340
>pfam07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=93.76 E-value=0.14 Score=29.79 Aligned_cols=15 Identities=33% Similarity=0.151 Sum_probs=11.7
Q ss_pred CCCCCEEEECCCCCC
Q ss_conf 230887996123233
Q gi|254781024|r 319 LSFPGGSLIGCAAGF 333 (554)
Q Consensus 319 ~~~~g~lLvGDAAG~ 333 (554)
...||+..+||.|+.
T Consensus 261 Ts~~~VyA~GDva~g 275 (277)
T pfam07992 261 TSVPGIYAAGDVAEG 275 (277)
T ss_pred ECCCCEEEEEECCCC
T ss_conf 099999998868899
No 341
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.67 E-value=0.14 Score=29.88 Aligned_cols=51 Identities=24% Similarity=0.312 Sum_probs=39.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC----C----CCCCCCCEECHHHHHHH
Q ss_conf 79998976899999999980899739999786778----9----86402740333678886
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEV----G----AHILSGAIIDPIGIDSL 69 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~p----G----~~i~sG~vl~p~aL~eL 69 (554)
|+|||||==|...|..|.+.++ +|+|+|+.+.. . ...+.|...+|..|++.
T Consensus 3 IiI~GaG~vG~~La~~Ls~e~~--dV~vID~d~~~~~~~~~~lDv~~i~Gd~~~~~~L~~A 61 (455)
T PRK09496 3 IIILGAGQVGGTLAERLVGENN--DVTVIDTDEERLRRLQDRLDVRTVVGNGSHPDVLREA 61 (455)
T ss_pred EEEECCCHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHHCCEEEEEECCCCHHHHHHC
T ss_conf 9999988899999999986899--7999989999999988625868999668999999965
No 342
>pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases.
Probab=93.67 E-value=0.14 Score=29.89 Aligned_cols=34 Identities=41% Similarity=0.592 Sum_probs=29.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 477999897689999999998089973999978677
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
-.|+|+|+|-+|+.||..++.+| ..|.++|+...
T Consensus 21 a~vvViG~Gv~G~~A~~~A~~lG--a~V~v~D~~~~ 54 (150)
T pfam01262 21 AKVVVIGGGVVGLGAAATAKGLG--APVTILDVRPE 54 (150)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCHH
T ss_conf 77999898789999999998679--98999729999
No 343
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.53 E-value=0.15 Score=29.58 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=29.3
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 42308879961232331366435226899999999999999874
Q gi|254781024|r 318 KLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLS 361 (554)
Q Consensus 318 k~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~ 361 (554)
++.-||+..+||- -.-..+=+-+|.-.|.+||-++-..+.
T Consensus 270 ~TnVpGVyAAGDV----~~k~lrQvvTA~~dGaiAA~~aerYi~ 309 (555)
T TIGR03143 270 ETNVPGVYAAGDL----RPKELRQVVTAVADGAIAATSAERYVK 309 (555)
T ss_pred CCCCCCEEECCCC----CCCCCCEEEEEHHHHHHHHHHHHHHHH
T ss_conf 0599988988345----289877354708757999999999999
No 344
>PRK10262 thioredoxin reductase; Provisional
Probab=93.33 E-value=0.63 Score=25.35 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=32.1
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 423088799612323313664352268999999999999998745
Q gi|254781024|r 318 KLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSN 362 (554)
Q Consensus 318 k~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~ 362 (554)
++.-||+..+||...-. .+=+..||-.|.+||.+|.+.|..
T Consensus 276 ~TsipGifAaGDv~~~~----~~qv~~Avg~G~~Aa~~a~~yL~~ 316 (321)
T PRK10262 276 QTSIPGVFAAGDVMDHI----YRQAITSAGTGCMAALDAERYLDG 316 (321)
T ss_pred CCCCCCEEEEEECCCCC----CCEEEEEHHHHHHHHHHHHHHHHH
T ss_conf 68989989999477898----876878078589999999999975
No 345
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.32 E-value=0.14 Score=29.87 Aligned_cols=11 Identities=0% Similarity=-0.025 Sum_probs=3.6
Q ss_pred CCCCEEEEEEC
Q ss_conf 89973999978
Q gi|254781024|r 37 NPHLSVVILEK 47 (554)
Q Consensus 37 g~~l~VlvlEK 47 (554)
|+++.=.|.|-
T Consensus 3 GHE~~G~V~~v 13 (280)
T TIGR03366 3 GHEIVGEVVAL 13 (280)
T ss_pred CCCEEEEEEEE
T ss_conf 71607999998
No 346
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.20 E-value=0.21 Score=28.61 Aligned_cols=11 Identities=27% Similarity=0.456 Sum_probs=6.2
Q ss_pred CCCEEEECCCH
Q ss_conf 64779998976
Q gi|254781024|r 14 EYDVVIIGAGP 24 (554)
Q Consensus 14 eyDVvIVGaGP 24 (554)
.+||+||=-=|
T Consensus 23 ~~dV~vID~d~ 33 (455)
T PRK09496 23 NNDVTVIDTDE 33 (455)
T ss_pred CCCEEEEECCH
T ss_conf 99799998999
No 347
>KOG2403 consensus
Probab=92.99 E-value=0.13 Score=30.06 Aligned_cols=57 Identities=23% Similarity=0.295 Sum_probs=42.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCC
Q ss_conf 64779998976899999999980899739999786778986402740333678886787
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPR 72 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd 72 (554)
.||.++||+|-||+.+|.-|+..| ..|+++-|-.--++|.++....-..+|--|+||
T Consensus 55 ~~da~vvgaggAGlr~~~~lae~g--~~~a~itkl~p~~s~tvaaqGg~nA~l~~m~~d 111 (642)
T KOG2403 55 TYDAVVVGAGGAGLRAARGLAELG--EKTAVITKLFPTRSHTVAAQGGINAALGNMGND 111 (642)
T ss_pred ECEEEEEECCCHHHHHHHHHHHCC--CEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 010589931533346666653067--337887324256665136432124443267775
No 348
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=92.93 E-value=0.054 Score=32.75 Aligned_cols=62 Identities=13% Similarity=0.250 Sum_probs=43.2
Q ss_pred EEEECCCCCHHCCHHHHCCHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 7961755440017354178132135860068896599705665156667047573006888862536
Q gi|254781024|r 476 LLIKDKDLQKKSELRIYSGPSMRYCPAGVYEWHQNNDENNYIIHAQNCIHCKACVIKDPNQNIEWNP 542 (554)
Q Consensus 476 l~~~~~~~~~~~~~~~~~~p~~~~cpa~vye~~~~~~~~~~~i~~~nc~hcktc~ik~p~~~i~w~~ 542 (554)
-++.-+.+..+.|.. =+-|..+||.++..+ .++....||...|+.|+.|.-.+|...|+-+.
T Consensus 41 WR~~rPvvD~eKCi~--Cg~C~~~CP~~AI~~---~~dg~~~ID~d~C~GCG~C~~~CP~~AI~mv~ 102 (105)
T PRK09623 41 WRTFIPVVDESKCVK--CYICWKFCPEPAIYI---KEDGYVAIDYDYCKGCGICANECPTKAITMEK 102 (105)
T ss_pred CEEECCCCCHHHCCC--CCCHHHHCCCCCEEE---CCCCCEEECHHHCCCHHHHHHHCCHHHHCCHH
T ss_conf 235247124625848--513464709980897---49984886866892863887767997733301
No 349
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=92.88 E-value=0.099 Score=30.91 Aligned_cols=169 Identities=19% Similarity=0.209 Sum_probs=76.1
Q ss_pred HHCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC-CCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCC-----
Q ss_conf 0103647799989768999999999808997399997867-7898640274033367888678726414885432-----
Q gi|254781024|r 10 KDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA-EVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHT----- 83 (554)
Q Consensus 10 re~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~-~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~----- 83 (554)
++.-.+-|+|||-||||-+.|++|.+.| ..|+-||-=. +| +.-.+..| +-||.+... ++..
T Consensus 397 ~~~tg~~VLVvGlGPAG~tLsH~Lln~G--h~Vv~IDGLKIep----Lp~~~~~p------ir~~~~l~~-~L~eR~~~G 463 (1048)
T PRK06567 397 KEPTNYNILVTGLGPAGFSLSYYLLRSG--HNVTAIDGLKITP----LPFDVHKP------IKFWHEYKN-LLSERMPRG 463 (1048)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHCC--CCEEEECCEEECC----CCHHHCCC------CHHHHHHHH-HHHHHHHCC
T ss_conf 8889964899924865201889987478--7289865445202----87465264------123899876-566653036
Q ss_pred --EEEEEEEEEECCCCCEECCCCCC--CCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEEC---CCCEEEEEEECCCCCEE
Q ss_conf --24366999977997677365435--654467882688888989999999987495330---68224347762776201
Q gi|254781024|r 84 --VVKRDLYWFLNAQRSIQIPHFCL--PDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIY---CGFTATEIYYGKKGEAL 156 (554)
Q Consensus 84 --~v~~d~~~~l~~~~~~~~p~~~~--p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~---~g~~v~~i~~~e~g~vv 156 (554)
-|.+-.+...=....+++-...+ ...+.-+|+ |+.+ ...-.+.|-++|-+-+ .|.---.++--++.-+.
T Consensus 464 FGGVaEygit~rwdkn~l~~i~l~l~rr~~f~~~gg--vr~g--gtlt~~~a~~lgfdhia~a~gag~p~~~~~~n~lar 539 (1048)
T PRK06567 464 FGGVAEYGITVRWDKNNLDILRLILERNNNFKYYDG--VALD--FNITKEQAFDLGFDHIAFCIGAGQPKVLDIENFEAK 539 (1048)
T ss_pred CCCEEECCEEEEECCCHHHHHHHHHHHHHCCEEECC--EEEC--CEEEHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHH
T ss_conf 564020235677442089999999977525646354--5545--620298998748770674315899850266651466
Q ss_pred EEEEC---CCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCH
Q ss_conf 45412---4324434665787563026774257860664432
Q gi|254781024|r 157 GILTG---EKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGS 195 (554)
Q Consensus 157 gv~t~---~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~ 195 (554)
||++. -|...-.|..+.+....+.++-.+||...|-.+.
T Consensus 540 Gvr~asdflM~Lqltga~~~~s~anlqvrlP~vVIGgGLTai 581 (1048)
T PRK06567 540 GVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSL 581 (1048)
T ss_pred HHHHHHHHHHHHHHCCCHHCCCCCCEEEECCEEEECCCCCHH
T ss_conf 777899999998734301105532405523569985874024
No 350
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.88 E-value=0.23 Score=28.40 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=29.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 779998976899999999980899739999786778
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEV 51 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~p 51 (554)
-|+|+|.|-+|.++|..|.+.| .+|.+.|...+.
T Consensus 11 ~i~viGlG~sG~s~a~~L~~~G--~~V~~~D~~~~~ 44 (450)
T PRK02472 11 KVLVLGLAKSGYAAAKLLHKLG--ANVTVNDGKPFS 44 (450)
T ss_pred EEEEEEECHHHHHHHHHHHHCC--CEEEEEECCCCC
T ss_conf 8999977899999999999886--989998488665
No 351
>pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin.
Probab=92.87 E-value=0.18 Score=29.11 Aligned_cols=32 Identities=38% Similarity=0.533 Sum_probs=28.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 7999897689999999998089973999978677
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
|.|||||.-|+.-|..++..| ++|.++|....
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G--~~V~l~D~~~~ 33 (180)
T pfam02737 2 VAVIGAGTMGAGIAQVFARAG--LEVVLVDISEE 33 (180)
T ss_pred EEEECCCHHHHHHHHHHHHCC--CEEEEEECCHH
T ss_conf 899997889999999999679--93999979989
No 352
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.86 E-value=0.2 Score=28.76 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=29.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 77999897689999999998089973999978677
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
-|+|+|.|-+|.++|..|++.| .+|.+.|-+..
T Consensus 16 ~v~V~GlG~sG~s~a~~L~~~G--~~v~~~D~~~~ 48 (481)
T PRK01438 16 RVVVAGLGVSGFPAADALHELG--ASVTVVADGDD 48 (481)
T ss_pred EEEEEEECHHHHHHHHHHHHCC--CEEEEEECCCC
T ss_conf 8999957588999999999679--98999979987
No 353
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.86 E-value=0.17 Score=29.33 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=29.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 7999897689999999998089973999978677
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
|.|||||.=|+.-|..+++.| ++|.|+|...+
T Consensus 5 V~ViGaG~MG~~IA~~~a~~G--~~V~l~D~~~e 36 (289)
T PRK09260 5 IVVVGAGVMGRGIAYVFASSG--FQTTLVDISQE 36 (289)
T ss_pred EEEECCCHHHHHHHHHHHHCC--CCEEEEECCHH
T ss_conf 999796887899999999689--98899979989
No 354
>TIGR00275 TIGR00275 conserved hypothetical protein TIGR00275; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases..
Probab=92.48 E-value=0.13 Score=30.00 Aligned_cols=161 Identities=19% Similarity=0.255 Sum_probs=87.1
Q ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC-CCCE--------ECHHHHHHHCCCHHHHCCCCCCCEEEEE
Q ss_conf 999897689999999998089973999978677898640-2740--------3336788867872641488543224366
Q gi|254781024|r 18 VIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL-SGAI--------IDPIGIDSLLPRWREDKGHPFHTVVKRD 88 (554)
Q Consensus 18 vIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~-sG~v--------l~p~aL~eL~Pd~~e~~g~pl~~~v~~d 88 (554)
+|||+|.||..++..+++.+++-+|+++|.+..++.+++ +|+. ++|..+-.-.|.-.......+.+....+
T Consensus 1 ~~~g~g~~g~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~ggg~c~~~~~~~~p~~~~~~~p~gg~~~~~~~~~~~~~~ 80 (411)
T TIGR00275 1 IVVGGGAAGLFCAANCARLGPEGRVLLLDNGKKPGRKVLLSGGGRCNFTNLCVDPGAYLSQNPRGGHFLKGALARFTPWD 80 (411)
T ss_pred CEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHEEECCCCCEEEEEEECCCHHHHHCCCCCCHHHHHHHHHCCCHH
T ss_conf 91236301356666654226554068862574100000112785100000100504665237765225665665313213
Q ss_pred EEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCC
Q ss_conf 99997799767736543565446788268888898999999998749533068224347762776201454124324434
Q gi|254781024|r 89 LYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYD 168 (554)
Q Consensus 89 ~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~ 168 (554)
.+.+. ....+.+........+. ..-+...+...|...++..|+++.....+..+...+++..+.......
T Consensus 81 ~~~~~-~~~g~~~~~~~~g~~~p----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 150 (411)
T TIGR00275 81 FIALV-GAEGVALHEKALGQLFP----CDDGAGQIVDCLLSECDKGGVELRLRSEVLGLEKLENGEKVRFTLQLN----- 150 (411)
T ss_pred HHHHH-HHCCCEEHHHHCCCEEC----CCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHCCCCEEEEEEECC-----
T ss_conf 55555-31142000110253103----566446899998875532262132100233444302564044433003-----
Q ss_pred CCCCCCCCCEEEEEEEEEEEECCCCCHHH
Q ss_conf 66578756302677425786066443255
Q gi|254781024|r 169 GTQGKHYIAPMLLLSKYMLVGEGACGSLT 197 (554)
Q Consensus 169 ~~~~~~~~~g~~i~Ak~vI~AdG~~s~la 197 (554)
.....++-.|.+.|-.+..+
T Consensus 151 ---------~~~~~~~~~~~~~g~~~~~~ 170 (411)
T TIGR00275 151 ---------GTVWGCEGLIIATGGLSLPG 170 (411)
T ss_pred ---------CCEEECCCCEEECCCCCCCC
T ss_conf ---------10000023123136520012
No 355
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.26 E-value=0.23 Score=28.40 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=29.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 7999897689999999998089973999978677
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
|.|||||.=|+.-|..+++.| +.|.|+|...+
T Consensus 6 VaViGaG~MG~gIA~~~a~~G--~~V~l~D~~~~ 37 (288)
T PRK08293 6 VTVAGAGVLGSQIAFQTAFKG--FDVTIYDISEE 37 (288)
T ss_pred EEEECCCHHHHHHHHHHHHCC--CCEEEEECCHH
T ss_conf 999897889999999999579--92899989889
No 356
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.08 E-value=0.33 Score=27.25 Aligned_cols=39 Identities=26% Similarity=0.418 Sum_probs=32.1
Q ss_pred HHCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 01036477999897689999999998089973999978677
Q gi|254781024|r 10 KDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 10 re~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
-|.|.=-|+|+|.|-+|.++|..|++.| .+|.+.|....
T Consensus 13 ~~~l~~kvlV~GlG~SG~s~a~~L~~~G--~~v~~~D~~~~ 51 (476)
T PRK00141 13 PDALRGRVLVAGAGVSGLGIAKMLSELG--CDVVVADDNET 51 (476)
T ss_pred HHHHCCCEEEEEECHHHHHHHHHHHHCC--CEEEEEECCCC
T ss_conf 6986998899922788999999999789--97999989987
No 357
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.07 E-value=0.25 Score=28.16 Aligned_cols=33 Identities=33% Similarity=0.517 Sum_probs=29.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 77999897689999999998089973999978677
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
-|.|||||.-|..-|..+++.| +.|.|+|...+
T Consensus 5 ~VaViGaG~mG~~IA~~~a~~G--~~V~l~D~~~~ 37 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAG--YDVVMVDISDE 37 (282)
T ss_pred EEEEECCCHHHHHHHHHHHHCC--CCEEEEECCHH
T ss_conf 8999897889999999999579--93899979989
No 358
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.95 E-value=0.26 Score=28.06 Aligned_cols=33 Identities=33% Similarity=0.474 Sum_probs=29.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 77999897689999999998089973999978677
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
-|.|||||.=|+.-|..+++.| ++|.|+|...+
T Consensus 6 ~VaViGAG~MG~giA~~~a~~G--~~V~l~D~~~e 38 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAG--YDVLLNDVSAD 38 (292)
T ss_pred EEEEECCCHHHHHHHHHHHHCC--CCEEEEECCHH
T ss_conf 8999896699999999999679--96899979889
No 359
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=91.94 E-value=0.41 Score=26.61 Aligned_cols=70 Identities=21% Similarity=0.171 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHH
Q ss_conf 89899999999874953306822434776277620145412432443466578756302677425786066443255421
Q gi|254781024|r 121 GQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQL 200 (554)
Q Consensus 121 ~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l 200 (554)
-.+..-+.+.|+..|+ |.-++ .++|+.+|--|+-.|..+.-..... ...-.--++++|.|+...+.-.+
T Consensus 78 ~~~~d~l~~~A~~igA-------vNTi~-~~~g~l~G~NTD~~G~~~~l~~~~~---~~~~~~vlilGaGGaa~ai~~al 146 (284)
T PRK12549 78 IPLLDELSDDARALGA-------VNTVV-FRDGRRIGHNTDWSGFAEGFRRGLP---DASLERVVQLGAGGAGAAVAHAL 146 (284)
T ss_pred HHHHHHHHHHHHHHCC-------EEEEE-EECCEEEEEECCHHHHHHHHHHHCC---CCCCCEEEEECCCCHHHHHHHHH
T ss_conf 9997052378998565-------21489-7599899980666889999997464---53557189965661689999999
Q ss_pred H
Q ss_conf 1
Q gi|254781024|r 201 I 201 (554)
Q Consensus 201 ~ 201 (554)
.
T Consensus 147 ~ 147 (284)
T PRK12549 147 L 147 (284)
T ss_pred H
T ss_conf 9
No 360
>PRK07660 consensus
Probab=91.90 E-value=0.27 Score=27.94 Aligned_cols=33 Identities=30% Similarity=0.496 Sum_probs=29.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 77999897689999999998089973999978677
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
-|.|||||.=|+.-|..+++.| ++|.|+|...+
T Consensus 5 ~VaViGaG~MG~gIA~~~a~~G--~~V~l~D~~~~ 37 (283)
T PRK07660 5 KIVVIGAGQMGSGIAQVCAMAG--YDVKVQDLKQE 37 (283)
T ss_pred EEEEECCCHHHHHHHHHHHHCC--CCEEEEECCHH
T ss_conf 8999896989999999999669--81899979889
No 361
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.87 E-value=0.23 Score=28.35 Aligned_cols=29 Identities=38% Similarity=0.515 Sum_probs=12.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 7999897689999999998089973999978
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEK 47 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK 47 (554)
|+|+|||-||+.|+...+++|. .|-.+|.
T Consensus 168 VlViGaGVAGlqAi~tA~~LGA--~V~a~Dv 196 (510)
T PRK09424 168 VLVIGAGVAGLAAIGAAGSLGA--IVRAFDT 196 (510)
T ss_pred EEEECCCHHHHHHHHHHHHCCC--EEEEECC
T ss_conf 8997464777999999962797--8999658
No 362
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=91.86 E-value=0.16 Score=29.44 Aligned_cols=14 Identities=14% Similarity=0.207 Sum_probs=6.9
Q ss_pred CCCCCEEEEECCCC
Q ss_conf 76641257664798
Q gi|254781024|r 246 NTSGGGFVYHFDDN 259 (554)
Q Consensus 246 ~~~gggwiy~~~d~ 259 (554)
++.|--|+.|...+
T Consensus 254 GP~Gk~FLLP~DP~ 267 (411)
T TIGR03224 254 GPFGSTFLMPNHPE 267 (411)
T ss_pred CCCCCEEECCCCCC
T ss_conf 78786455889989
No 363
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF; InterPro: IPR012731 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the more widely distributed clade of ThiF proteins as found in E. coli..
Probab=91.83 E-value=0.25 Score=28.11 Aligned_cols=33 Identities=30% Similarity=0.440 Sum_probs=30.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 4779998976899999999980899739999786
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKS 48 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~ 48 (554)
=-|+|||+|==||.++-+||.+|-+ .|.++|..
T Consensus 22 s~VLiiGaGgLGs~~~~~LA~AGVG-~i~i~D~D 54 (210)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAAAGVG-TITIVDDD 54 (210)
T ss_pred CCEEEEEECHHHHHHHHHHHHCCCC-EEEEEECC
T ss_conf 8659997261456899999828883-78998516
No 364
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I; InterPro: IPR010226 This entry represents the I subunit (one of 14 subunits, A to N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This family does not contain 'I' subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.; GO: 0016651 oxidoreductase activity acting on NADH or NADPH, 0006118 electron transport.
Probab=91.75 E-value=0.11 Score=30.63 Aligned_cols=56 Identities=29% Similarity=0.485 Sum_probs=44.9
Q ss_pred CCCCHHCCHHHHCCHHHCCCCCEEEEEEECCC------C------EEEEEECCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 55440017354178132135860068896599------7------05665156667047573006888862536
Q gi|254781024|r 481 KDLQKKSELRIYSGPSMRYCPAGVYEWHQNND------E------NNYIIHAQNCIHCKACVIKDPNQNIEWNP 542 (554)
Q Consensus 481 ~~~~~~~~~~~~~~p~~~~cpa~vye~~~~~~------~------~~~~i~~~nc~hcktc~ik~p~~~i~w~~ 542 (554)
.+-|+-.+| |.+.|||..=++++... + ..++||..-||-|+=|.=.+|..-|.-|.
T Consensus 43 ~e~CiaC~L------C~~~CP~~~I~~~~~~~~~enPv~~g~r~~~~y~In~grCifCGlC~E~CP~~AI~lt~ 110 (129)
T TIGR01971 43 EEKCIACEL------CARVCPADAIRVVTEERETENPVEDGKRRLKFYQINFGRCIFCGLCEEACPTDAIVLTP 110 (129)
T ss_pred CCEEECCCC------EEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHCCC
T ss_conf 713564301------00007544415652038888873236523789621321222330751127101543373
No 365
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.75 E-value=0.27 Score=27.87 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=29.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 77999897689999999998089973999978677
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
-|.|||||.-|+.-|..+++.| ++|.|+|...+
T Consensus 5 ~VaViGaG~MG~gIA~~~a~~G--~~V~l~D~~~~ 37 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTG--YDVTIVDVSEE 37 (291)
T ss_pred EEEEECCCHHHHHHHHHHHHCC--CCEEEEECCHH
T ss_conf 8999887688999999999589--98899989989
No 366
>PRK09117 consensus
Probab=91.59 E-value=0.3 Score=27.58 Aligned_cols=32 Identities=41% Similarity=0.559 Sum_probs=28.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 7999897689999999998089973999978677
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
|.|||||.-|+.-|..+++.| ++|.|+|...+
T Consensus 5 VaViGaG~mG~~iA~~~a~~G--~~V~l~D~~~~ 36 (282)
T PRK09117 5 VGIIGAGTMGNGIAQACAVAG--LDVVMVDISDA 36 (282)
T ss_pred EEEECCCHHHHHHHHHHHHCC--CCEEEEECCHH
T ss_conf 999897799999999999679--96899989889
No 367
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.57 E-value=0.38 Score=26.84 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=28.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 77999897689999999998089973999978677
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
-|+|+|.|-+|.++|..|.+.| .+|.+.|....
T Consensus 8 ~v~V~GlG~sG~s~~~~L~~~G--~~v~~~D~~~~ 40 (438)
T PRK03806 8 NVVIIGLGLTGLSCVDFFLARG--VTPRVMDTRMT 40 (438)
T ss_pred EEEEEEECHHHHHHHHHHHHCC--CEEEEEECCCC
T ss_conf 8999945788899999999789--96999989999
No 368
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.56 E-value=0.34 Score=27.18 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=28.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 4779998976899999999980899739999786
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKS 48 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~ 48 (554)
--|+|+|.|-+|.++|..|.+.| .+|.+.|..
T Consensus 13 k~V~V~GlG~sG~a~a~~L~~~G--~~v~~~D~~ 44 (487)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFG--ARPTVCDDD 44 (487)
T ss_pred CEEEEEEECHHHHHHHHHHHHCC--CEEEEEECC
T ss_conf 98999915683899999999786--979999898
No 369
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=91.46 E-value=0.11 Score=30.54 Aligned_cols=56 Identities=20% Similarity=0.335 Sum_probs=42.7
Q ss_pred EECCCCCHHCCHHHHCCHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 61755440017354178132135860068896599705665156667047573006888862536
Q gi|254781024|r 478 IKDKDLQKKSELRIYSGPSMRYCPAGVYEWHQNNDENNYIIHAQNCIHCKACVIKDPNQNIEWNP 542 (554)
Q Consensus 478 ~~~~~~~~~~~~~~~~~p~~~~cpa~vye~~~~~~~~~~~i~~~nc~hcktc~ik~p~~~i~w~~ 542 (554)
+.|.+.|+.. +-|.++||.+.-.+ +++....||...|+-|+.|.-.+|..-|+...
T Consensus 47 vid~dkCi~C------g~C~~~CP~~AI~~---de~g~~~iD~d~C~GCG~Ca~~CP~~AI~mv~ 102 (105)
T PRK09624 47 EFNRDKCVRC------YLCYIYCPEPAIYL---DEEGYPVFDYDYCKGCGICANECPTKAIEMVR 102 (105)
T ss_pred EECHHHCCCC------CCHHHHCCCCEEEE---CCCCCEEECHHHCCCCCHHHHHCCHHHHEEEE
T ss_conf 8744268282------12242509560798---79988885765785705545257983611323
No 370
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.44 E-value=0.44 Score=26.45 Aligned_cols=36 Identities=31% Similarity=0.330 Sum_probs=30.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 3647799989768999999999808997399997867
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
.+--|+|||+|==|+.+|.+|+++|-+ ++.++|...
T Consensus 23 ~~s~VlIVGaGGLGs~~a~~La~aGVG-~l~ivD~D~ 58 (337)
T PRK12475 23 REKHVLIIGAGALGAANAEALVRAGIG-KLTIADRDY 58 (337)
T ss_pred HCCCEEEECCCHHHHHHHHHHHHCCCC-EEEEEECCE
T ss_conf 639699997777789999999982898-699984998
No 371
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=91.43 E-value=0.52 Score=25.88 Aligned_cols=10 Identities=40% Similarity=0.737 Sum_probs=3.5
Q ss_pred EEEEECCCCC
Q ss_conf 5786066443
Q gi|254781024|r 185 YMLVGEGACG 194 (554)
Q Consensus 185 ~vI~AdG~~s 194 (554)
++|..-|..|
T Consensus 403 VII~G~GR~G 412 (602)
T PRK03659 403 VIIVGFGRFG 412 (602)
T ss_pred EEEECCCHHH
T ss_conf 8997887568
No 372
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=91.22 E-value=0.3 Score=27.56 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=28.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 7999897689999999998089973999978677
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
|+|||+|-=|+..|.+|++.|. +|.++.|+..
T Consensus 5 I~IiGaGAvG~~~a~~L~~aG~--~V~lv~r~~~ 36 (341)
T PRK08229 5 ICVLGAGSIGCYLGGRLAAAGA--DVTLIGRARI 36 (341)
T ss_pred EEEECCCHHHHHHHHHHHHCCC--CEEEEECHHH
T ss_conf 9998967999999999985899--8799956789
No 373
>pfam06100 Strep_67kDa_ant Streptococcal 67 kDa myosin-cross-reactive antigen like family. Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis.
Probab=91.20 E-value=0.52 Score=25.89 Aligned_cols=39 Identities=33% Similarity=0.307 Sum_probs=31.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCC--CCEEEEEECCCCCCC
Q ss_conf 477999897689999999998089--973999978677898
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINP--HLSVVILEKSAEVGA 53 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~--~l~VlvlEK~~~pG~ 53 (554)
-++-|||+|-|+|+||.+|-|-++ +-+|-+||+..-+|.
T Consensus 3 ~~AyivGsGiasLaaA~~LIrDa~~pg~~IhIlE~~~~~GG 43 (500)
T pfam06100 3 KSAYIIGSGLASLAAAVFLIRDGQMDGERIHILEELPLPGG 43 (500)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
T ss_conf 65999897689999889886427878641389855888986
No 374
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=91.19 E-value=0.52 Score=25.91 Aligned_cols=40 Identities=30% Similarity=0.316 Sum_probs=32.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC--CCEEEEEECCCCCCC
Q ss_conf 6477999897689999999998089--973999978677898
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINP--HLSVVILEKSAEVGA 53 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~--~l~VlvlEK~~~pG~ 53 (554)
+-++-|||+|-|+|+||.+|-|-|+ +=+|-+||+..-+|.
T Consensus 22 ~~~AyiiGsGiasLAaA~~LIrDa~~pg~~IhIlE~~~~~GG 63 (577)
T PRK13977 22 NKKAYLIGSGLASLAAAVFLIRDGHMPGENITILEELPIPGG 63 (577)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
T ss_conf 575899887789999999998606879652289756888997
No 375
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=91.14 E-value=0.25 Score=28.17 Aligned_cols=50 Identities=22% Similarity=0.587 Sum_probs=40.4
Q ss_pred CCHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 7813213586006889659970566515666704757300688886253679
Q gi|254781024|r 493 SGPSMRYCPAGVYEWHQNNDENNYIIHAQNCIHCKACVIKDPNQNIEWNPPQ 544 (554)
Q Consensus 493 ~~p~~~~cpa~vye~~~~~~~~~~~i~~~nc~hcktc~ik~p~~~i~w~~p~ 544 (554)
+-||++-||.|..-. ..+++-..+|...||=|+-|-..+|+.......-.
T Consensus 74 ~ppCv~vCPtgA~~k--~~~dGiV~vd~d~CIGC~yCi~ACPyga~~~~~~~ 123 (203)
T COG0437 74 DPPCVKVCPTGALFK--REEDGIVLVDKDLCIGCGYCIAACPYGAPQFNPDK 123 (203)
T ss_pred CCCCCCCCCCCCEEE--ECCCCEEEECCCCCCCCHHHHHHCCCCCCEECCCC
T ss_conf 996335478875388--35897799658722473477864998885657666
No 376
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.90 E-value=0.38 Score=26.85 Aligned_cols=32 Identities=28% Similarity=0.364 Sum_probs=28.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 7999897689999999998089973999978677
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
|.|||||--|+.-|..+++.| ++|.|+|...+
T Consensus 5 VaViGaG~mG~giA~~~a~~G--~~V~l~D~~~~ 36 (308)
T PRK06129 5 IAIVGAGLIGRAWAIVFARAG--HRVRLWDADPA 36 (308)
T ss_pred EEEECCCHHHHHHHHHHHHCC--CCEEEEECCHH
T ss_conf 999777899999999998589--93899989889
No 377
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.84 E-value=0.51 Score=25.95 Aligned_cols=36 Identities=33% Similarity=0.369 Sum_probs=30.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 3647799989768999999999808997399997867
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
.+--|+|||+|==|+.+|.+|+++|-+ ++.++|...
T Consensus 23 ~~a~VlVvGaGGLGs~~a~~La~aGVG-~i~ivD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVG-KVTIVDRDY 58 (339)
T ss_pred HCCCEEEECCCHHHHHHHHHHHHCCCC-EEEEEECCE
T ss_conf 629789987777779999999984898-299980999
No 378
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.78 E-value=0.42 Score=26.54 Aligned_cols=32 Identities=31% Similarity=0.481 Sum_probs=28.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 7799989768999999999808997399997867
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
-|.|||||.=|+.-|..+++.| +.|.++|...
T Consensus 7 ~VaViGAG~MG~gIA~~~a~~G--~~V~l~D~~~ 38 (310)
T PRK06130 7 NLAIIGAGAMGSGIAALFASKG--LDVVLIDPMP 38 (310)
T ss_pred EEEEECCCHHHHHHHHHHHHCC--CCEEEEECCH
T ss_conf 8989787799999999998589--9889997999
No 379
>pfam02558 ApbA Ketopantoate reductase PanE/ApbA. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <= 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway.
Probab=90.75 E-value=0.45 Score=26.32 Aligned_cols=31 Identities=23% Similarity=0.440 Sum_probs=27.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 799989768999999999808997399997867
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
|.|+|+|-=|+..|.+|++.| .+|.++.|+.
T Consensus 1 I~IiGaGaiG~~~a~~L~~ag--~~V~lv~R~~ 31 (150)
T pfam02558 1 IAILGAGAVGSLYGARLARAG--HDVTLIARGR 31 (150)
T ss_pred CEEECCCHHHHHHHHHHHHCC--CEEEEEECCC
T ss_conf 999966899999999999779--9289997563
No 380
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.72 E-value=0.45 Score=26.34 Aligned_cols=35 Identities=9% Similarity=0.170 Sum_probs=29.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 4779998976899999999980899739999786778
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEV 51 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~p 51 (554)
=.++|+|.|-+|.++|..|.+.| .+|.+.|....+
T Consensus 8 ~~~LV~G~G~sG~s~a~~L~~~G--~~V~~~D~~~~~ 42 (448)
T PRK03803 8 GLRIVVGLGKSGMSLVRFLARQG--YQFAVTDTRENP 42 (448)
T ss_pred CCEEEEEECHHHHHHHHHHHHCC--CEEEEEECCCCC
T ss_conf 95899998999999999999788--959999189991
No 381
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.65 E-value=0.43 Score=26.47 Aligned_cols=32 Identities=31% Similarity=0.589 Sum_probs=28.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 7999897689999999998089973999978677
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
|.|||||-=|+.-|..+++.| ++|.|+|...+
T Consensus 5 V~ViGaG~mG~~IA~~~a~~G--~~V~l~D~~~~ 36 (284)
T PRK07819 5 VGVVGAGQMGSGIAEVCARAG--VDVLVFETTEE 36 (284)
T ss_pred EEEECCCHHHHHHHHHHHHCC--CEEEEEECCHH
T ss_conf 999897789999999999579--90899979889
No 382
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.61 E-value=0.51 Score=25.99 Aligned_cols=36 Identities=25% Similarity=0.565 Sum_probs=29.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 779998976899999999980899739999786778
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEV 51 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~p 51 (554)
-|+|+|.|-+|.++|..|.+.+.++.|.+.|....+
T Consensus 9 kvlV~GlG~sG~s~a~~L~~~~~~~~v~~~D~~~~~ 44 (438)
T PRK04663 9 NVVVVGLGITGLSVVKHLRKTQPQLTVKVIDTRETP 44 (438)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCCCEEEEECCCCCH
T ss_conf 499990678589999999966998469996398893
No 383
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=90.61 E-value=0.41 Score=26.63 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=28.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 7999897689999999998089973999978677
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
|.|+|+|-=|+..|.+|++.| .+|.++.|+.+
T Consensus 3 I~IiGaGaiG~~~a~~L~~ag--~~V~li~r~~~ 34 (307)
T PRK06522 3 IAILGAGAIGGLFGARLAQAG--HDVTLVARGAT 34 (307)
T ss_pred EEEECCCHHHHHHHHHHHHCC--CCEEEEECCHH
T ss_conf 999991499999999998489--98899978888
No 384
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=90.59 E-value=0.53 Score=25.85 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=31.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 3647799989768999999999808997399997867
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
.+--|+|||+|=-|+.+|.+|+++|-+ ++.++|-..
T Consensus 31 ~~s~VlivG~GGlG~~~~~~La~aGvg-~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAAAQYLAAAGVG-TLTLVDFDT 66 (245)
T ss_pred HHCCEEEECCCHHHHHHHHHHHHCCCC-EEEEEECCC
T ss_conf 719789987777789999999985996-599996886
No 385
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.45 E-value=0.45 Score=26.33 Aligned_cols=32 Identities=31% Similarity=0.386 Sum_probs=28.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 7999897689999999998089973999978677
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
|+|+|.|-+|.++|..|.+.| .+|.+.|....
T Consensus 6 vlV~GlG~SG~s~a~~L~~~g--~~v~~~D~~~~ 37 (418)
T PRK00683 6 VVVLGLGVTGKSVARFLAQKG--VYVIGVDNSLE 37 (418)
T ss_pred EEEEEECHHHHHHHHHHHHCC--CEEEEECCCHH
T ss_conf 999808887999999999782--98999829814
No 386
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.37 E-value=0.6 Score=25.49 Aligned_cols=33 Identities=33% Similarity=0.425 Sum_probs=29.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 79998976899999999980899739999786778
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEV 51 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~p 51 (554)
.+|+|.|-+|.++|..|++.| .+|.+.|....+
T Consensus 3 a~V~GlG~sG~s~a~~L~~~G--~~v~~~D~~~~~ 35 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQG--WEVVVSERNDSP 35 (459)
T ss_pred EEEEEECHHHHHHHHHHHHCC--CEEEEEECCCCC
T ss_conf 999954899999999999789--959999898992
No 387
>KOG1439 consensus
Probab=90.34 E-value=0.14 Score=29.80 Aligned_cols=39 Identities=21% Similarity=0.352 Sum_probs=34.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 64779998976899999999980899739999786778986
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAH 54 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~ 54 (554)
||||+|+|-|---+..+..|+..|+ +|+.+||..+=|+-
T Consensus 4 eyDvivlGTgl~ecilS~~Ls~~gk--kVLhiDrN~yYG~~ 42 (440)
T KOG1439 4 EYDVIVLGTGLTECILSGALSVDGK--KVLHIDRNDYYGGE 42 (440)
T ss_pred CEEEEEECCCCHHHEEEEEEEECCC--EEEEEECCCCCCCC
T ss_conf 5149997377364100000257695--89997078877764
No 388
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent; InterPro: IPR011275 This entry contains bacterial and archaeal malate dehydrogenases, which convert malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterised , and have been used to determine members of this group. ; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=90.31 E-value=0.36 Score=27.03 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=25.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 7999897689999999998089973999978
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEK 47 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK 47 (554)
|-|||||--|+|+|..||+.--.-.|+|||=
T Consensus 4 isvIGAGfvGaTTAf~lA~KeLard~VLlDi 34 (308)
T TIGR01763 4 ISVIGAGFVGATTAFLLAEKELARDVVLLDI 34 (308)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCEEEEEEE
T ss_conf 8997068612589999986740671689850
No 389
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.21 E-value=0.6 Score=25.46 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=27.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 799989768999999999808997399997867
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
|+|||+|==|+.+|.+|++.|-+ ++.++|...
T Consensus 2 V~IvG~GGLG~~~a~~La~aGvg-~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVG-NLKLVDFDV 33 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHCCC-EEEEEECCC
T ss_conf 89987678899999999981897-399998994
No 390
>PTZ00318 NADH dehydrogenase; Provisional
Probab=90.16 E-value=0.36 Score=27.04 Aligned_cols=29 Identities=14% Similarity=0.012 Sum_probs=16.8
Q ss_pred CCCCCCCCCCCCCHHCCCCCCCCCCCCEE
Q ss_conf 88776421123211103788998886217
Q gi|254781024|r 448 KPDGKLTFDIMSSLFLAKVKYVKEQPMHL 476 (554)
Q Consensus 448 kpdg~~~fd~~~~v~~s~~~h~~~qp~Hl 476 (554)
|+.+++.--...+.|.|++.-+-.||--|
T Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (514)
T PTZ00318 460 KAFAKLKMMETETTYTSETLKEGAEKGYL 488 (514)
T ss_pred CCHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 55777750252133355545366788988
No 391
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=90.15 E-value=0.68 Score=25.10 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=30.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 647799989768999999999808997399997867
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
+--|+|||+|==|+.+|.+|++.|-+ ++.++|...
T Consensus 27 ~s~VlivG~GGLG~~~a~~La~aGVG-~i~lvD~D~ 61 (209)
T PRK08644 27 KAKVGIAGAGGLGSNIAVALARSGVG-NLKLVDFDV 61 (209)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCC-EEEEEECCE
T ss_conf 29689988878899999999993898-189988999
No 392
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=90.15 E-value=0.12 Score=30.44 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=32.0
Q ss_pred HHCCCCCEEEEE-----E-ECCC--CEEEEEECCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 321358600688-----9-6599--70566515666704757300688886253
Q gi|254781024|r 496 SMRYCPAGVYEW-----H-QNND--ENNYIIHAQNCIHCKACVIKDPNQNIEWN 541 (554)
Q Consensus 496 ~~~~cpa~vye~-----~-~~~~--~~~~~i~~~nc~hcktc~ik~p~~~i~w~ 541 (554)
-+..=|++|-.. . ++++ ..+..||.++|++|++|...+|.+-|.+.
T Consensus 18 ~~~~~pg~vi~~~g~s~~~~tg~wR~~rPvid~dkCi~Cg~C~~~CP~~AI~~d 71 (105)
T PRK09624 18 SEKMTPGAIAYIPGSSVINKTGSWRVFMPEFNRDKCVRCYLCYIYCPEPAIYLD 71 (105)
T ss_pred HHCCCCCEEECCCCCCCCCCCCCCEEECCEECHHHCCCCCCHHHHCCCCEEEEC
T ss_conf 750699638706885322578786365538744268282122425095607987
No 393
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=90.06 E-value=0.45 Score=26.37 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=29.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 3647799989768999999999808997399997867
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
|.--|.|+|+|.=|+..|.+|++.|. +|.++.+..
T Consensus 1 m~MkI~IiGaGAiG~~~a~~L~~ag~--dV~lv~r~~ 35 (305)
T PRK05708 1 MSMTWHILGAGSLGSLWACRLARAGL--PVRLILRDR 35 (305)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC--CEEEEEECH
T ss_conf 99889998823999999999984899--739999478
No 394
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=89.99 E-value=0.67 Score=25.13 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=12.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 2268999999999999998745886
Q gi|254781024|r 341 GSHNAIISGMLAAEKIVERLSNGKK 365 (554)
Q Consensus 341 GI~~Am~SG~lAAEai~eal~~g~~ 365 (554)
|.-.+|...+.|.|++.-.+..++.
T Consensus 306 gpv~GiiGslqA~EaiK~L~g~g~~ 330 (379)
T PRK08762 306 GVLPGVIGLLQATEAIKLLLGIGDP 330 (379)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 2258999999999999998489976
No 395
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.89 E-value=0.61 Score=25.44 Aligned_cols=33 Identities=12% Similarity=0.301 Sum_probs=28.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 77999897689999999998089973999978677
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
-|+|+|.|-+|.++|..|.+.| .+|.+.|....
T Consensus 7 ~v~viGlG~sG~s~a~~L~~~G--~~v~~~D~~~~ 39 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKNG--AEVAAYDAELK 39 (445)
T ss_pred EEEEEEECHHHHHHHHHHHHCC--CEEEEEECCCC
T ss_conf 8999998999999999999789--91999979999
No 396
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=89.86 E-value=0.64 Score=25.29 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=30.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 3647799989768999999999808997399997867
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
.+--|+|||+|=-|+.+|.+||.+|-+ ++.++|...
T Consensus 41 ~~a~VlvvG~GGLG~~~~~yLaaaGvG-~i~ivD~D~ 76 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGVG-TIGIVEFDV 76 (392)
T ss_pred HHCCEEEECCCHHHHHHHHHHHHCCCC-EEEEECCCC
T ss_conf 719789987875789999999982897-599987899
No 397
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=89.82 E-value=1.5 Score=22.81 Aligned_cols=185 Identities=19% Similarity=0.288 Sum_probs=93.3
Q ss_pred EEEECCCHHHHHHHHHHHHCC-CCCEEEEEECCCCCC---CCCCCCCEECHHHHHHH-C--CCHHHHCCCCCCC--EE-E
Q ss_conf 799989768999999999808-997399997867789---86402740333678886-7--8726414885432--24-3
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQIN-PHLSVVILEKSAEVG---AHILSGAIIDPIGIDSL-L--PRWREDKGHPFHT--VV-K 86 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g-~~l~VlvlEK~~~pG---~~i~sG~vl~p~aL~eL-~--Pd~~e~~g~pl~~--~v-~ 86 (554)
++|||.|+||-.+.-.+..+. ..+.|.++=....|- .| +|-.+-.+..++++ + .||-+..+.-+.+ +| .
T Consensus 6 lvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~-Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v~~ 84 (793)
T COG1251 6 LVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRIL-LSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKVIQ 84 (793)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEE-ECCCCCCCCCHHHHHCCCHHHHHHCCCEEECCCEEEE
T ss_conf 899924640267999998308655048995267776644100-0000289866888760322058775918971880478
Q ss_pred -----------------EEEEEEECCCCCEECC--CCCCCCCC---------------CC-CCCEEE-------------
Q ss_conf -----------------6699997799767736--54356544---------------67-882688-------------
Q gi|254781024|r 87 -----------------RDLYWFLNAQRSIQIP--HFCLPDFM---------------DN-KEHYIV------------- 118 (554)
Q Consensus 87 -----------------~d~~~~l~~~~~~~~p--~~~~p~~~---------------~~-~g~yiv------------- 118 (554)
-|+..+-+....|-+| ....+..+ ++ ..++++
T Consensus 85 idr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~d~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L 164 (793)
T COG1251 85 IDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGL 164 (793)
T ss_pred ECCCCCEEECCCCCEEECCEEEECCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHH
T ss_conf 51676568846885840432787057655656789987787127831999999999986068858975511416788788
Q ss_pred ------------EH----HHHHH----HHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCE
Q ss_conf ------------88----89899----99999987495330682243477627762014541243244346657875630
Q gi|254781024|r 119 ------------SL----GQVCR----WLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAP 178 (554)
Q Consensus 119 ------------~r----~~fd~----~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g 178 (554)
++ .++|+ .|...-++.|..+..+....+++- .+.+.+++..| |
T Consensus 165 ~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~D---------------G 227 (793)
T COG1251 165 KDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFAD---------------G 227 (793)
T ss_pred HHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHC--CCCEEEEEECC---------------C
T ss_conf 747973489873366889765268899999998860604531320245645--76403676056---------------8
Q ss_pred EEEEEEEEEEECCCCCH--HHHHHHHHCCC-------CCCCCHHHHHHHH
Q ss_conf 26774257860664432--55421122489-------9888898998898
Q gi|254781024|r 179 MLLLSKYMLVGEGACGS--LTRQLIERYSL-------MDGRQPQKFGLGI 219 (554)
Q Consensus 179 ~~i~Ak~vI~AdG~~s~--lak~l~~~~~l-------~~~~~p~~~~~gv 219 (554)
.++.|++||.|.|.+-. ++++.+..++. ....+|.-|++|=
T Consensus 228 ~~i~ad~VV~a~GIrPn~ela~~aGlavnrGIvvnd~mqTsdpdIYAvGE 277 (793)
T COG1251 228 TEIPADLVVMAVGIRPNDELAKEAGLAVNRGIVVNDYMQTSDPDIYAVGE 277 (793)
T ss_pred CCCCCEEEEEECCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCEEEHHH
T ss_conf 73442069996230466176786176658980563655556777665176
No 398
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=89.81 E-value=0.65 Score=25.25 Aligned_cols=65 Identities=20% Similarity=0.321 Sum_probs=45.6
Q ss_pred CCCCCEEEEECCCCCHHCCHHHHCCHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 88862179617554400173541781321358600688965997056651566670475730068888625367
Q gi|254781024|r 470 KEQPMHLLIKDKDLQKKSELRIYSGPSMRYCPAGVYEWHQNNDENNYIIHAQNCIHCKACVIKDPNQNIEWNPP 543 (554)
Q Consensus 470 ~~qp~Hl~~~~~~~~~~~~~~~~~~p~~~~cpa~vye~~~~~~~~~~~i~~~nc~hcktc~ik~p~~~i~w~~p 543 (554)
.+...++...|.+.|+-. +-|.+.||-..- ....+....|+...|+.|+.|--.+|..-|+-.|-
T Consensus 101 ~~~~~~~a~i~~~~CiGc------g~Cv~~CP~dAI---~~~~~~~~~V~~d~C~gCg~Cv~~CP~~~I~lvP~ 165 (184)
T PRK05113 101 AEPVRKVAFIDEDNCIGC------TKCIQACPVDAI---VGATKAMHTVISDLCTGCDLCVAPCPTDCIEMIPV 165 (184)
T ss_pred CCCCCCEEEECCCCCCCC------CHHHHHCCCCCE---ECCCCCCEEECHHHCCCCCHHHHHCCCCCEEEEEC
T ss_conf 556762588865248886------811201994627---76899886978646808352546558673688768
No 399
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.77 E-value=0.88 Score=24.32 Aligned_cols=35 Identities=23% Similarity=0.404 Sum_probs=29.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 77999897689999999998089973999978677
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
-|.|||+|--|+++|+.|+..+.--.++|+|....
T Consensus 5 Kv~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~ 39 (312)
T cd05293 5 KVTVVGVGQVGMACAISILAKGLADELVLVDVVED 39 (312)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 69998978889999999996699887999938898
No 400
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.72 E-value=0.65 Score=25.22 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=28.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 47799989768999999999808997399997867
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
--|.|+|.|-+|.++|..|.+.| .+|.+.|...
T Consensus 10 k~v~v~GlG~sG~s~a~~L~~~G--~~V~~~D~~~ 42 (457)
T PRK01390 10 KTVALFGLGGSGLATARALKAGG--AEVIAWDDNP 42 (457)
T ss_pred CEEEEEEECHHHHHHHHHHHHCC--CEEEEEECCC
T ss_conf 98999943699999999999789--9799993992
No 401
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=89.60 E-value=0.057 Score=32.59 Aligned_cols=56 Identities=11% Similarity=0.304 Sum_probs=39.0
Q ss_pred ECCCCCHHCCHHHHCCHHHCCCCCEEEEEEEC---CCCEEEEEECCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 17554400173541781321358600688965---99705665156667047573006888862536
Q gi|254781024|r 479 KDKDLQKKSELRIYSGPSMRYCPAGVYEWHQN---NDENNYIIHAQNCIHCKACVIKDPNQNIEWNP 542 (554)
Q Consensus 479 ~~~~~~~~~~~~~~~~p~~~~cpa~vye~~~~---~~~~~~~i~~~nc~hcktc~ik~p~~~i~w~~ 542 (554)
.|.+-|.+. +-|.+-||.+. .+++ +.+...+|+...|+.|..|-=.||..-++-+.
T Consensus 221 ~~~~~C~~C------~~C~~VCP~~~--vir~~l~~~~~~~~v~~~eCI~CG~CIDvC~~~al~f~~ 279 (287)
T PRK09477 221 HDREKCTRC------MDCFHVCPEPQ--VLRPPLKGKQSSPQVLSGDCTTCGRCIDVCSEDVFNFTI 279 (287)
T ss_pred CCCCCCCCC------CHHHHHCCCCC--CCCHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEE
T ss_conf 788758092------35767579954--244443144446884883105365999671815515442
No 402
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=89.58 E-value=0.61 Score=25.42 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=29.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 79998976899999999980899739999786778
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEV 51 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~p 51 (554)
|.|||||.=|++-|..++..| ++|.|.|...+.
T Consensus 5 VAVIGAGvMGsGwAa~FA~aG--~~V~L~Dp~peA 37 (489)
T PRK07531 5 AACIGGGVIGGGWAARFLLNG--WDVAVFDPHPEA 37 (489)
T ss_pred EEEECCCHHHHHHHHHHHHCC--CEEEEEECCHHH
T ss_conf 999871886899999999579--969999488789
No 403
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=89.34 E-value=0.91 Score=24.23 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=32.3
Q ss_pred HHCCCCHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 10242001036477999897689999999998089973999978677
Q gi|254781024|r 4 CDILHNKDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 4 ~~~~~~re~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
+.|+..|- |.|||+|--|+++|+.|++.+- ..++|+|....
T Consensus 2 ~~~~~~~K-----V~IIGaG~VG~~~A~~l~~~~l-~eivLiDi~~~ 42 (322)
T PTZ00082 2 AKMIPRKK-----ISLIGSGNIGGVMAYLIQLKNL-ADVVLFDIVPN 42 (322)
T ss_pred CCCCCCCC-----EEEECCCHHHHHHHHHHHCCCC-CEEEEEECCCC
T ss_conf 11017982-----9998969899999999963899-77999978898
No 404
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.25 E-value=0.71 Score=24.98 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=29.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 477999897689999999998089973999978677
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
--|+|+|.|-+|.++|..|.+.| .+|.+.|+...
T Consensus 15 kkv~i~GlG~sG~a~a~~L~~~g--~~v~~~D~~~~ 48 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLG--AKVTAFDKKSE 48 (458)
T ss_pred CEEEEEEECHHHHHHHHHHHHCC--CEEEEEECCCC
T ss_conf 96999978788999999999788--97999989884
No 405
>PRK07411 hypothetical protein; Validated
Probab=89.17 E-value=0.75 Score=24.79 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=30.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 3647799989768999999999808997399997867
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
.+--|+|||+|=-|+.+|.+||.+|-+ ++.++|-..
T Consensus 37 ~~a~VlvvG~GGLG~p~~~yLaaaGvG-~i~ivD~D~ 72 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAAGIG-RIGIVDFDI 72 (390)
T ss_pred HHCCEEEECCCHHHHHHHHHHHHCCCC-EEEEEECCC
T ss_conf 749789988872379999999983897-599974899
No 406
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=89.15 E-value=0.78 Score=24.68 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=30.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 3647799989768999999999808997399997867
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
.+--|+|||+|=-|+.+|.+||.+|-+ ++.++|...
T Consensus 40 ~~a~VlvvG~GGLG~p~~~yLaaaGvG-~i~ivD~D~ 75 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVG-TITLIDDDT 75 (370)
T ss_pred HCCCEEEECCCHHHHHHHHHHHHCCCC-EEEEEECCC
T ss_conf 619789988875789999999982897-489873898
No 407
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=89.12 E-value=0.06 Score=32.43 Aligned_cols=141 Identities=17% Similarity=0.201 Sum_probs=65.0
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH---HHH-HHCCCCCCCCCCCC
Q ss_conf 99999987458865303678998642046678887422566887616046899989999---885-42265666656778
Q gi|254781024|r 353 AEKIVERLSNGKKHDDPIEIEDSWRQTQIGKDLWIIRNIKPLLSRFGVFIGLSLGLMDI---WIQ-KILGFSFLGTLKHH 428 (554)
Q Consensus 353 AEai~eal~~g~~~~~l~~Ye~~~~~s~~~~el~~~rn~~~~~~~~g~~~g~~~~~~~~---~~~-~~~~~~~~~~~~~~ 428 (554)
+-+|.+|+..|.+--+ |+-. --+.-+.+-+|+.- +.|+-..-++..... ... -+++|-+.+-
T Consensus 269 ~~aV~~AIv~~~Plie------r~vT-ltG~av~~p~nv~V---rIGTP~~~lL~~~G~~~~~~~~vi~gGPmmG~---- 334 (529)
T COG4656 269 AYAVKRAIVDGKPLIE------RVVT-LTGDAVKRPKNVWV---RIGTPVSQLLNEAGGIDTKPYRVIMGGPMMGF---- 334 (529)
T ss_pred HHHHHHHHHCCCCEEE------EEEE-EECCCCCCCCEEEE---ECCCCHHHHHHHCCCCCCCCCEEEECCCCCCC----
T ss_conf 9999999865997179------9998-51412168860899---77894999999748976787517846875564----
Q ss_pred CCCHHHCCCHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEEECCCCCHHCCHHHHCCHHHCCCCCEEE---
Q ss_conf 88965400056437444878877642112321110378899888621796175544001735417813213586006---
Q gi|254781024|r 429 KMDSCSLEAASQHKKIDYPKPDGKLTFDIMSSLFLAKVKYVKEQPMHLLIKDKDLQKKSELRIYSGPSMRYCPAGVY--- 505 (554)
Q Consensus 429 ~~d~~~~~~~~~~~~i~~~kpdg~~~fd~~~~v~~s~~~h~~~qp~Hl~~~~~~~~~~~~~~~~~~p~~~~cpa~vy--- 505 (554)
. -|+=..++.|.++=.+.-+.-+.-.|.+- ..|+.+ +-|...||..--
T Consensus 335 ----------------~--l~~ld~PVtK~t~~Ll~~~~~e~~~~~~~-----qsCi~C------~~C~d~CP~~Llp~q 385 (529)
T COG4656 335 ----------------K--LPTLDAPVTKTTNGLLALTKKELLEPIKE-----QSCIRC------SLCADACPVNLLPQQ 385 (529)
T ss_pred ----------------C--CCCCCCCEECCCCEEEECCCCCCCCCCHH-----HCCCCH------HHHHHHCCCCCCHHH
T ss_conf ----------------1--44567764614443784373234663010-----115047------778774751258888
Q ss_pred --EEEE-CCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf --8896-599705665156667047573006888
Q gi|254781024|r 506 --EWHQ-NNDENNYIIHAQNCIHCKACVIKDPNQ 536 (554)
Q Consensus 506 --e~~~-~~~~~~~~i~~~nc~hcktc~ik~p~~ 536 (554)
-+-. ++..+...-+..+|++||.|...||+.
T Consensus 386 l~~~a~~~~~~e~~~~~l~dCIECg~Ca~vCPs~ 419 (529)
T COG4656 386 LYWFAKGEQHDEEEEHNLLDCIECGACAYVCPSN 419 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCC
T ss_conf 6677654245688887766525507311007777
No 408
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=88.93 E-value=0.96 Score=24.05 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=30.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 3647799989768999999999808997399997867
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
.+--|+|||+|=-|+.+|..|++.|-+ ++.++|...
T Consensus 20 ~~s~VlivG~GGlGs~~~~~La~~Gvg-~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVG-KLGLVDDDV 55 (228)
T ss_pred HCCCEEEECCCHHHHHHHHHHHHCCCC-EEEEEECCC
T ss_conf 649789988778899999999983997-589997874
No 409
>pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family.
Probab=88.73 E-value=1 Score=23.86 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=28.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 7799989768999999999808997399997867
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
-|+|||+|--|+..|..|++.|-+ ++.++|...
T Consensus 3 kVlivG~GglG~~~~~~La~~Gvg-~i~lvD~D~ 35 (134)
T pfam00899 3 RVLVVGAGGLGSPAAEYLARAGVG-KLTLVDFDT 35 (134)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCC-EEEEEECCC
T ss_conf 899989888999999999993897-499998956
No 410
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.65 E-value=0.81 Score=24.56 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=26.3
Q ss_pred CCHHHCCCCHHCCCCCEEEECCCHHHHHHHHHHHHCCC
Q ss_conf 96010242001036477999897689999999998089
Q gi|254781024|r 1 MNSCDILHNKDVFEYDVVIIGAGPAGLAAAIRCKQINP 38 (554)
Q Consensus 1 ~~~~~~~~~re~meyDVvIVGaGPAG~saA~~La~~g~ 38 (554)
|..+++--.| |+|+|.|-+|.++|..|.+.|.
T Consensus 1 m~~~~~~gkk------v~V~GlG~sG~aaa~~L~~~g~ 32 (468)
T PRK04690 1 MRISQLEGKR------VALWGWGREGRAAYRALRAQLP 32 (468)
T ss_pred CCHHHCCCCE------EEEEEECHHHHHHHHHHHHCCC
T ss_conf 9764439797------9998347879999999996699
No 411
>PRK08223 hypothetical protein; Validated
Probab=88.65 E-value=0.86 Score=24.39 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=29.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 647799989768999999999808997399997867
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
+--|+|||+|=-|+.+|..||++|-+ ++.++|-..
T Consensus 27 ~s~VlVvG~GGlGs~~a~~LAraGVG-~i~lvD~D~ 61 (287)
T PRK08223 27 NSRVAIAGLGGVGGVHLLTLARLGIG-KFNIADFDV 61 (287)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCC-EEEEEECCC
T ss_conf 59689993675579999999982897-599974998
No 412
>PRK07118 ferredoxin; Validated
Probab=88.61 E-value=0.22 Score=28.55 Aligned_cols=20 Identities=35% Similarity=0.703 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCCCCCCCCEE
Q ss_conf 66670475730068888625
Q gi|254781024|r 521 QNCIHCKACVIKDPNQNIEW 540 (554)
Q Consensus 521 ~nc~hcktc~ik~p~~~i~w 540 (554)
..||-|+.|.-.+|.+-|+.
T Consensus 213 ~gCIgC~~C~k~CP~~AI~i 232 (276)
T PRK07118 213 VGCIGCGKCVKACPAEAITV 232 (276)
T ss_pred CCCCCCHHHHHHCCCCCEEE
T ss_conf 25866278887588264997
No 413
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=88.58 E-value=0.87 Score=24.37 Aligned_cols=33 Identities=27% Similarity=0.427 Sum_probs=29.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 77999897689999999998089973999978677
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
-|.|||.|=-|+..|..||+.| .+|+.+|....
T Consensus 2 kI~ViGlGyVGl~~a~~la~~G--~~V~g~D~d~~ 34 (185)
T pfam03721 2 RIAVIGLGYVGLPTAVCLAEIG--HDVVGVDINQS 34 (185)
T ss_pred EEEEECCCHHHHHHHHHHHHCC--CEEEEEECCHH
T ss_conf 7999897874899999999489--93999979989
No 414
>PRK10194 ferredoxin-type protein; Provisional
Probab=88.18 E-value=0.6 Score=25.47 Aligned_cols=69 Identities=14% Similarity=0.167 Sum_probs=45.0
Q ss_pred CCCEEEEECCCCCHHCCHHHHCCHHHCCCCCEEEEEEEC-CCCEEEEEECCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 862179617554400173541781321358600688965-9970566515666704757300688886253
Q gi|254781024|r 472 QPMHLLIKDKDLQKKSELRIYSGPSMRYCPAGVYEWHQN-NDENNYIIHAQNCIHCKACVIKDPNQNIEWN 541 (554)
Q Consensus 472 qp~Hl~~~~~~~~~~~~~~~~~~p~~~~cpa~vye~~~~-~~~~~~~i~~~nc~hcktc~ik~p~~~i~w~ 541 (554)
++-.+++...+-|...+ ..+=.-|+..||.+.-+|... ++..+.+||.+.|+=|+.|...+|.+-|+-.
T Consensus 90 ~~~~~~~~i~~~Cl~~~-~~~C~~C~d~Cp~~Ai~~~~~~~g~~~P~Vd~~~C~GCG~C~~~CP~~ais~~ 159 (164)
T PRK10194 90 RAWDLQFTIGDACLAYQ-SVECRRCQDSCEPMAIIFRPTLSGIYQPQLNSQLCNGCGACAASCPVSAITAE 159 (164)
T ss_pred CCCCCEEEECCCCCCCC-CCCCCHHHHHCCHHHCEEECCCCCCCCCEECCCCCCCCCCHHHHCCCCCEEEE
T ss_conf 64462352054330589-98200022248887705121569876866768678864201420898771888
No 415
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.07 E-value=0.45 Score=26.34 Aligned_cols=31 Identities=19% Similarity=0.389 Sum_probs=16.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCHHH
Q ss_conf 2578606644325542112248998888989
Q gi|254781024|r 184 KYMLVGEGACGSLTRQLIERYSLMDGRQPQK 214 (554)
Q Consensus 184 k~vI~AdG~~s~lak~l~~~~~l~~~~~p~~ 214 (554)
+++|...|+.|.-+.---.+.++|.+.....
T Consensus 213 DVLvVGgGPAgaaAAIYaARKGiRTGl~aer 243 (520)
T COG3634 213 DVLVVGGGPAGAAAAIYAARKGIRTGLVAER 243 (520)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCHHHHHHHH
T ss_conf 4999868863167899998612111001565
No 416
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=88.05 E-value=1 Score=23.93 Aligned_cols=33 Identities=30% Similarity=0.330 Sum_probs=29.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 7999897689999999998089973999978677
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
|.|||+|-=|+++|+.|++.+-. .++|+|....
T Consensus 1 V~IIGaG~VG~~~a~~l~~~~~~-el~L~D~~~~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELG-DVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHHCCCC-EEEEECCCCC
T ss_conf 98989688899999999857996-7999809998
No 417
>PRK08328 hypothetical protein; Provisional
Probab=88.00 E-value=1.1 Score=23.71 Aligned_cols=35 Identities=17% Similarity=0.305 Sum_probs=30.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 364779998976899999999980899739999786
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKS 48 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~ 48 (554)
.+--|+|||+|==|+.+|..|++.|-+ ++.++|..
T Consensus 26 ~~s~VlvvG~GGlGs~~~~~La~~GvG-~i~lvD~D 60 (230)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVG-TVLLIDEQ 60 (230)
T ss_pred HCCCEEEECCCHHHHHHHHHHHHCCCC-EEEEECCC
T ss_conf 559789988787899999999984898-68987487
No 418
>PRK08268 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.94 E-value=0.89 Score=24.30 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=28.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 7999897689999999998089973999978677
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
|.|||||--|+.-|..+++.| +.|.|+|....
T Consensus 6 VaViGaGtMG~gIA~~~a~aG--~~V~l~D~~~~ 37 (503)
T PRK08268 6 VAVIGAGAMGAGIAQVAAQAG--HTVLLYDARAG 37 (503)
T ss_pred EEEECCCHHHHHHHHHHHHCC--CEEEEEECCHH
T ss_conf 999796889999999999389--90899979989
No 419
>KOG3256 consensus
Probab=87.78 E-value=0.37 Score=26.96 Aligned_cols=51 Identities=27% Similarity=0.529 Sum_probs=37.7
Q ss_pred HHHCCCCCEEE--EEEECC-CCE---EEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 13213586006--889659-970---56651566670475730068888625367988879988
Q gi|254781024|r 495 PSMRYCPAGVY--EWHQNN-DEN---NYIIHAQNCIHCKACVIKDPNQNIEWNPPQGGDGPHYV 552 (554)
Q Consensus 495 p~~~~cpa~vy--e~~~~~-~~~---~~~i~~~nc~hcktc~ik~p~~~i~w~~p~gg~gp~y~ 552 (554)
-|.+.|||..- |+.+.. +.+ ++-|+...||-|+-|.-.||..-|. .||||.
T Consensus 118 lCeavCPaqaitieae~r~dgsrRttrYdIDmtkCIyCG~CqEaCPvdaiv-------egpnfE 174 (212)
T KOG3256 118 LCEAVCPAQAITIEAEERTDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV-------EGPNFE 174 (212)
T ss_pred HHHHHCCCCCCEEEEEECCCCCCCCEEECCCCEEEEEECCHHHHCCCCCEE-------CCCCCE
T ss_conf 888748744545522213775421021044521465604536438723121-------168730
No 420
>TIGR01423 trypano_reduc trypanothione-disulfide reductase; InterPro: IPR001864 Trypanothione reductase from Leishmania, and African and South American trypanosomes, has been purified and characterised . The enzymes have similar physical, mechanistic and kinetic properties, and are members of the flavoprotein disulphide oxidoreductase family. Trypanothione is the parasite analogue of glutathione, hence this enzyme is equivalent to glutathione reductase. It catalyses the reaction: NADPH + trypanothione = NADP(+) + reduced trypanothione Trypanothione reductase shows pronounced specificty for its disulphide substrates, trypanothione disulphide or glutathionylspermidine disulphide. The 3D structure of the enzyme has been determined and its mode of substrate binding revealed in detail , offering hope for the design of drugs to combat Chagas disease. The structure belongs to the alpha+beta class, i.e. with mainly anti-parallel beta-sheets separated by alpha and beta regions. It contains an alpha-beta sandwich characteristic of FAD/NAD-linked reductases and a C-terminal dimerisation domain.; GO: 0015036 disulfide oxidoreductase activity, 0006118 electron transport.
Probab=87.75 E-value=0.29 Score=27.71 Aligned_cols=150 Identities=22% Similarity=0.385 Sum_probs=74.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC---CCCCCEEC----HH--------HHHHHCCCHHHHCC
Q ss_conf 64779998976899999999980899739999786778986---40274033----36--------78886787264148
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAH---ILSGAIID----PI--------GIDSLLPRWREDKG 78 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~---i~sG~vl~----p~--------aL~eL~Pd~~e~~g 78 (554)
-||.||||||-.|+-|.+..|.+-+ -+|.|+|-...-|.+ .+.|.++. |+ -+|.| ||..|
T Consensus 3 a~dlv~iGaGsGGleaGWnaa~l~k-krvav~d~q~~hGPP~~aalGGtCvnvGCvPkklmvtGa~ymd~~----resaG 77 (486)
T TIGR01423 3 AYDLVVIGAGSGGLEAGWNAASLYK-KRVAVVDLQKVHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDTL----RESAG 77 (486)
T ss_pred EEEEEEEECCCCCCCCCHHHHHHHC-CEEEEEEEECCCCCCCEECCCCCEEEECCCCCCEEEECHHHHHHH----HHHCC
T ss_conf 0578998247774100101233210-316899842247993000108726872343630011005788888----76237
Q ss_pred CCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEE
Q ss_conf 85432243669999779976773654356544678826888889899999999874953306822434776277620145
Q gi|254781024|r 79 HPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGI 158 (554)
Q Consensus 79 ~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv 158 (554)
.-.+ + ....++ ++|-.--.-+|. -+.+.. +.+=.--+...|.+++.|+-+. ++..++.|
T Consensus 78 fGWe----------~-d~~~~~-~nWk~liaakn~--av~~in--~sye~mf~dteGl~f~~G~Gal-----~~~~~v~v 136 (486)
T TIGR01423 78 FGWE----------L-DAESVK-ANWKALIAAKNK--AVLDIN--DSYEDMFKDTEGLEFFLGFGAL-----EDKNVVLV 136 (486)
T ss_pred CCEE----------C-CHHHHH-HHHHHHHHHHHH--HHHHHH--HHHHHHHHCCCCEEEEECCCEE-----CCCCEEEE
T ss_conf 6400----------0-324544-667899987667--777676--5577774102440222011200-----14757999
Q ss_pred EECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHH
Q ss_conf 4124324434665787563026774257860664432554
Q gi|254781024|r 159 LTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTR 198 (554)
Q Consensus 159 ~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak 198 (554)
+-...- ... --..+.+.++|.|.|..-..-+
T Consensus 137 re~adP---~s~------v~e~l~~e~i~~atGsWPq~l~ 167 (486)
T TIGR01423 137 RESADP---KSK------VKERLDAEYILLATGSWPQMLK 167 (486)
T ss_pred ECCCCC---HHH------HHHHHCCCEEEEEECCCCCCCC
T ss_conf 627885---257------8651043359997167732003
No 421
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=87.71 E-value=1.1 Score=23.61 Aligned_cols=16 Identities=13% Similarity=0.028 Sum_probs=6.3
Q ss_pred CCCHHHHHHHHHHHHH
Q ss_conf 3522689999999999
Q gi|254781024|r 339 IKGSHNAIISGMLAAE 354 (554)
Q Consensus 339 g~GI~~Am~SG~lAAE 354 (554)
+.....|+.+|..-|+
T Consensus 328 g~~~~~a~~~g~~Laq 343 (558)
T PRK10669 328 GHSQRTALTIAASLAQ 343 (558)
T ss_pred CCCHHHHHHHHHHHCC
T ss_conf 8987789999988603
No 422
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=87.60 E-value=2 Score=21.84 Aligned_cols=51 Identities=18% Similarity=0.379 Sum_probs=38.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC-CCCC----CCCCCEECHHHHHHH
Q ss_conf 7999897689999999998089973999978677-8986----402740333678886
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE-VGAH----ILSGAIIDPIGIDSL 69 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~-pG~~----i~sG~vl~p~aL~eL 69 (554)
|.|+|||-=|...|...+++| ++|++++.... |..+ ..++...++.+|.+|
T Consensus 15 IgIlGgGQLg~Mla~aA~~LG--~~vivld~~~d~PA~~vAd~~~~~~~~D~~al~~~ 70 (395)
T PRK09288 15 VMLLGSGELGKEVAIEAQRLG--VEVIAVDRYANAPAMQVAHRSHVIDMLDGDALRAV 70 (395)
T ss_pred EEEECCCHHHHHHHHHHHHCC--CEEEEECCCCCCCHHHHCCEEEECCCCCHHHHHHH
T ss_conf 999898899999999999879--98999848995944672865797787899999999
No 423
>PRK06223 malate dehydrogenase; Reviewed
Probab=87.30 E-value=1.4 Score=22.90 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=29.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 7999897689999999998089973999978677
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
|.|||||--|+++|+.|+..+.--.++|+|....
T Consensus 3 I~IiGaG~VG~~~a~~l~~~~l~~el~L~Di~~~ 36 (312)
T PRK06223 3 ISIIGAGNVGATLAHLLALKELGKDVVLFDIPEG 36 (312)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 9999969899999999985799874899769997
No 424
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=87.25 E-value=1.9 Score=22.08 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=30.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 477999897689999999998089973999978677
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
--|.|||+|--|+++|+.|+..+.--.++|+|....
T Consensus 7 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiD~~~~ 42 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 849999979889999999986699888999808987
No 425
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase; InterPro: IPR004572 Protoporphyrinogen oxidase (1.3.3.4 from EC) oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll, in the penultimate step in heme and porphyrin biosynthesis. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.; GO: 0004729 protoporphyrinogen oxidase activity, 0006118 electron transport, 0006779 porphyrin biosynthetic process.
Probab=87.19 E-value=1.2 Score=23.45 Aligned_cols=42 Identities=31% Similarity=0.539 Sum_probs=36.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCC----CCEEEEEECCCCCCCCCC
Q ss_conf 477999897689999999998089----973999978677898640
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINP----HLSVVILEKSAEVGAHIL 56 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~----~l~VlvlEK~~~pG~~i~ 56 (554)
-+++|||+|-+|+..++.+++.-+ ++.+.+.|+....|..+.
T Consensus 3 ~~~~~~ggg~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~ 48 (556)
T TIGR00562 3 KEVVVVGGGISGLCAAYFLSKERPDKNLGVELTLFEADDRVGGWIY 48 (556)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEE
T ss_conf 4168861761357888887652221247730588724665575134
No 426
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=87.15 E-value=1.4 Score=23.03 Aligned_cols=33 Identities=30% Similarity=0.416 Sum_probs=29.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 7799989768999999999808997399997867
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
+|+|+|||==|+++|..|++.+. .+|++.+|..
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d-~~V~iAdRs~ 35 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGD-GEVTIADRSK 35 (389)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-CEEEEEECCH
T ss_conf 28998986667999999985789-6299984888
No 427
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=87.09 E-value=1.2 Score=23.44 Aligned_cols=32 Identities=25% Similarity=0.252 Sum_probs=27.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 7799989768999999999808997399997867
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
-|+|+|+|-=|+..|.+|++.|. +|.++-|+.
T Consensus 7 kI~IiGaGAiG~~~a~~L~~aG~--~V~li~r~~ 38 (313)
T PRK06249 7 RIAIIGTGAIGGFYGAMLARAGF--DVHFLLRSD 38 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC--CEEEEECCH
T ss_conf 89999914999999999996699--569996755
No 428
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=87.06 E-value=1.3 Score=23.21 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=30.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 3647799989768999999999808997399997867
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
.+--|+|||+|==|+.+|.+||.+|-+ ++.++|-..
T Consensus 27 ~~s~VlvvG~GGLG~~~~~yLa~aGvG-~i~i~D~D~ 62 (355)
T PRK05597 27 FDAKVSVIGAGGLGSPALLYLAGAGVG-HITIIDDDV 62 (355)
T ss_pred HCCCEEEECCCHHHHHHHHHHHHCCCC-EEEEEECCC
T ss_conf 629689987776689999999984997-599972999
No 429
>PRK13984 putative oxidoreductase; Provisional
Probab=86.96 E-value=0.21 Score=28.63 Aligned_cols=39 Identities=21% Similarity=0.038 Sum_probs=30.7
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 423088799612323313664352268999999999999998745
Q gi|254781024|r 318 KLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSN 362 (554)
Q Consensus 318 k~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~ 362 (554)
++..+|+...||+.. ..+ +-.||..|+.||++|.+.|..
T Consensus 565 ~Ts~pgVFAgGD~v~---G~s---VV~AIa~GR~AA~~Id~yL~g 603 (604)
T PRK13984 565 QTSVPWLFAGGDIVH---GPD---IIHGVADGYWAAKGIDQYLRK 603 (604)
T ss_pred CCCCCCEEECCCCCC---CCH---HHHHHHHHHHHHHHHHHHHCC
T ss_conf 778999887778687---628---999999999999999999775
No 430
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.93 E-value=1.3 Score=23.19 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=30.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 647799989768999999999808997399997867
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
+--|+|||.|==|+.+|..|++.|-+ ++.++|...
T Consensus 11 ~s~V~v~G~GGvGs~~a~~LarsGVG-~l~lvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVG-KLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCC-EEEEEECCE
T ss_conf 49789988863689999999980997-599971999
No 431
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=86.87 E-value=0.44 Score=26.42 Aligned_cols=16 Identities=0% Similarity=-0.330 Sum_probs=7.8
Q ss_pred CCCCCEEEECCCCCCC
Q ss_conf 2308879961232331
Q gi|254781024|r 319 LSFPGGSLIGCAAGFV 334 (554)
Q Consensus 319 ~~~~g~lLvGDAAG~v 334 (554)
...+|...+-|-++-.
T Consensus 250 ~~r~gC~~C~D~ta~~ 265 (346)
T PRK09326 250 YARNPCHHCCDYTSVF 265 (346)
T ss_pred HHCCCCCCCCCCCCCC
T ss_conf 7468997665635653
No 432
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=86.82 E-value=1.6 Score=22.56 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=30.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 3647799989768999999999808997399997867
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
.+-.|+|||+|--|+.+|..|+..|-+ ++.++|...
T Consensus 20 ~~s~VlvvG~GGLG~~v~~~La~aGvg-~i~ivD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIG-SLTILDDRT 55 (197)
T ss_pred HCCCEEEECCCHHHHHHHHHHHHHCCC-EEEEEECCC
T ss_conf 609599988788999999999983798-699998991
No 433
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=86.72 E-value=0.36 Score=27.04 Aligned_cols=51 Identities=20% Similarity=0.398 Sum_probs=31.9
Q ss_pred HCCHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 178132135860068896599705665156667047573006888862536
Q gi|254781024|r 492 YSGPSMRYCPAGVYEWHQNNDENNYIIHAQNCIHCKACVIKDPNQNIEWNP 542 (554)
Q Consensus 492 ~~~p~~~~cpa~vye~~~~~~~~~~~i~~~nc~hcktc~ik~p~~~i~w~~ 542 (554)
+.+|.+.-=|..-.--+.+.--+.+.+|...|+.|+.|.-.+|.+.|.++.
T Consensus 13 f~kp~T~~YP~~~~~~~p~r~RG~~~~d~dkCigC~~C~~~CP~~aI~~~~ 63 (111)
T PRK08348 13 FKKPATNLFPATEPVPVPENFRGKILYNVDKCVGCRMCVTVCPAGVFVYLP 63 (111)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEECC
T ss_conf 599813189887766899876782056855282807287759322067527
No 434
>PRK08318 dihydropyrimidine dehydrogenase; Validated
Probab=86.57 E-value=1.2 Score=23.31 Aligned_cols=64 Identities=16% Similarity=0.265 Sum_probs=47.7
Q ss_pred EECCCCCHHCCHHHHCCHHHCCCCCEEEEEEE-CCCCEEEEEECCCCCCCCCCCCCCCCCC-CEEECCCCCC
Q ss_conf 61755440017354178132135860068896-5997056651566670475730068888-6253679888
Q gi|254781024|r 478 IKDKDLQKKSELRIYSGPSMRYCPAGVYEWHQ-NNDENNYIIHAQNCIHCKACVIKDPNQN-IEWNPPQGGD 547 (554)
Q Consensus 478 ~~~~~~~~~~~~~~~~~p~~~~cpa~vye~~~-~~~~~~~~i~~~nc~hcktc~ik~p~~~-i~w~~p~gg~ 547 (554)
..|++.|+.+ |-|-.-|=-+.|.-++ +++...+.+|..+|+-|.-|-.+||-.+ |+-.+-+-|.
T Consensus 338 ~i~~~~Ci~C------g~C~~~C~d~~~qai~~~~~~~~~~v~~~~C~gC~LC~~vCPv~~~i~m~~~~~~~ 403 (413)
T PRK08318 338 RIDQDKCIGC------GRCYIACEDTSHQAIEWDDGTRTPEVNDEECVGCNLCAHVCPVEGCITMGEVKFGK 403 (413)
T ss_pred CCCHHHCCCC------CCEEEEECCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCC
T ss_conf 4373138998------88444616787220686288873266766479867702018976765765668777
No 435
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.52 E-value=1.3 Score=23.21 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=26.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 77999897689999999998089973999978677
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
-|.|||+|-=|+.-|..++..| ++|.++|..+.
T Consensus 9 ~VaVIGaG~MG~giAa~~a~~G--~~V~l~D~~~~ 41 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHG--LDVVAWDPAPG 41 (321)
T ss_pred EEEEECCCHHHHHHHHHHHHCC--CEEEEEECCHH
T ss_conf 7999888788899999999479--85999969888
No 436
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.44 E-value=1.5 Score=22.78 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=26.4
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 799989-76899999999980899739999786
Q gi|254781024|r 17 VVIIGA-GPAGLAAAIRCKQINPHLSVVILEKS 48 (554)
Q Consensus 17 VvIVGa-GPAG~saA~~La~~g~~l~VlvlEK~ 48 (554)
|.|||| |-=|+++|+.|++.+.--.++|+|-.
T Consensus 3 V~IIGA~G~VG~~~A~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 3 VAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 999999981899999999729997769998277
No 437
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=86.41 E-value=1.5 Score=22.65 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=28.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 7999897689999999998089973999978677
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
|.|+|||-=|++.|..|++.|. +|.+..|..+
T Consensus 3 I~IiGaG~wGtAla~~la~n~~--~V~l~~r~~~ 34 (159)
T pfam01210 3 IAVLGAGSWGTALAKVLARNGH--EVRLWGRDEE 34 (159)
T ss_pred EEEECCCHHHHHHHHHHHHCCC--EEEEEEECCH
T ss_conf 9999969999999999998799--8999990436
No 438
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=86.40 E-value=1.3 Score=23.15 Aligned_cols=31 Identities=29% Similarity=0.458 Sum_probs=27.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 799989768999999999808997399997867
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
|+|+|+|-=|+..|.+|++.|+ +|.++-|++
T Consensus 3 I~I~GaGAiG~~~a~~L~~~g~--~V~lv~r~~ 33 (306)
T PRK12921 3 IAVVGAGAVGGTFGARLLEAGR--DVTFLGRSA 33 (306)
T ss_pred EEEECCCHHHHHHHHHHHHCCC--CEEEEEECC
T ss_conf 9999924999999999983699--889997000
No 439
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB; InterPro: IPR012730 This entry describes the molybdopterin biosynthesis protein MoeB in Escherichia coli and related species. MoeB and MoaD are involved in molybdenum cofactor biosynthesis, an evolutionarily conserved pathway. The MoeB enzyme covalently modifies the molybdopterin synthase MoaD by sulphurylation. The crystal structure of the complex between the E. coli MoeB and MoaD proteins reveals a MoeB(2)-MoaD(2) heterotetramer in which the MoeB subunits form a mainly hydrophobic dimer . MoeB is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (IPR000594 from INTERPRO). ; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=86.35 E-value=1 Score=23.95 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=30.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 47799989768999999999808997399997867
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
--|+|||+|==|++|+-+||.+|-+ +..|+|-..
T Consensus 25 s~vLivG~GGLGCAa~QYLa~AGvG-~l~L~DfD~ 58 (240)
T TIGR02355 25 SKVLIVGLGGLGCAASQYLAAAGVG-RLTLVDFDT 58 (240)
T ss_pred CCEEEEECCHHHHHHHHHHHHCCCC-EEEEEECCE
T ss_conf 5677783670345678888643663-278863371
No 440
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=86.22 E-value=1.5 Score=22.79 Aligned_cols=36 Identities=31% Similarity=0.467 Sum_probs=30.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 6477999897689999999998089973999978677
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
...|+|+|+|=|+-++++.|++.|.. +|.|+.|...
T Consensus 19 ~k~vlIlGaGGaarai~~aL~~~g~~-~I~i~nR~~~ 54 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAA-KIVIVNRTLE 54 (155)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCC-EEEEEECCHH
T ss_conf 99999986758999999999971998-2288608999
No 441
>KOG1346 consensus
Probab=86.00 E-value=2.5 Score=21.23 Aligned_cols=49 Identities=27% Similarity=0.316 Sum_probs=35.7
Q ss_pred CCCCCCCCC-CCCCEEEECCCCCCCCCCCC----CCHHHHHHHHHHHHHHHHHH
Q ss_conf 421248742-30887996123233136643----52268999999999999998
Q gi|254781024|r 311 GGWQSVPKL-SFPGGSLIGCAAGFVNLLRI----KGSHNAIISGMLAAEKIVER 359 (554)
Q Consensus 311 gg~~s~pk~-~~~g~lLvGDAAG~vnP~~g----~GI~~Am~SG~lAAEai~ea 359 (554)
||+.....+ +..|+..+||||+|-|+.-| +--..|..||+||+|...-|
T Consensus 466 GGfrvnaeL~ar~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgA 519 (659)
T KOG1346 466 GGFRVNAELKARENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGA 519 (659)
T ss_pred CCEEEEHEEECCCCEEEECCHHHHHCCCCCCEECCCCCCCEEECEECCCCCCCC
T ss_conf 767741200015433650424454053111000032443245020026544445
No 442
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=85.92 E-value=1.3 Score=23.23 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=31.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 4779998976899999999980899739999786778
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEV 51 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~p 51 (554)
--|+|+|-|-+|.++|..|.+.| .+|.+.|...++
T Consensus 8 ~kv~V~GLG~sG~a~a~~L~~~G--~~v~v~D~~~~~ 42 (448)
T COG0771 8 KKVLVLGLGKSGLAAARFLLKLG--AEVTVSDDRPAP 42 (448)
T ss_pred CEEEEEECCCCCHHHHHHHHHCC--CEEEEECCCCCC
T ss_conf 97999926651099999999779--869998389876
No 443
>TIGR02951 DMSO_dmsB dimethylsulfoxide reductase, chain B; InterPro: IPR014297 This family consists of the iron-sulphur subunit, or chain B, of the anaerobic dimethyl sulphoxide reductase enzyme. Chains A and B are catalytic, while chain C is a membrane anchor..
Probab=85.82 E-value=0.65 Score=25.26 Aligned_cols=42 Identities=21% Similarity=0.606 Sum_probs=35.5
Q ss_pred CCHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 78132135860068896599705665156667047573006888
Q gi|254781024|r 493 SGPSMRYCPAGVYEWHQNNDENNYIIHAQNCIHCKACVIKDPNQ 536 (554)
Q Consensus 493 ~~p~~~~cpa~vye~~~~~~~~~~~i~~~nc~hcktc~ik~p~~ 536 (554)
+-+|++-||.|. +.+..+..-..+|...||=|+.|.-.+||.
T Consensus 70 dP~Cv~~CPTGA--m~KR~~dG~V~Vd~~~CiGC~yC~waCPYg 111 (162)
T TIGR02951 70 DPVCVKNCPTGA--MYKREEDGLVLVDQDKCIGCRYCVWACPYG 111 (162)
T ss_pred CCCEECCCCCCC--CCCCCCCCEEEEECCCCCCCCCCCCCCCCC
T ss_conf 386101178863--111168963787088653434456458788
No 444
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase; InterPro: IPR003710 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway . Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE . ApbA and PanE are allelic .; GO: 0008677 2-dehydropantoate 2-reductase activity, 0006206 pyrimidine base metabolic process.
Probab=85.62 E-value=1.4 Score=22.89 Aligned_cols=32 Identities=28% Similarity=0.473 Sum_probs=27.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 79998976899999999980899739999786
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKS 48 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~ 48 (554)
|+|||+|==|+..|.+|++.|.+..|.+|-|+
T Consensus 2 i~i~G~GA~G~l~ga~L~~~g~~~~V~~~~R~ 33 (332)
T TIGR00745 2 IAIIGAGAVGSLYGARLARAGANHDVTLLARG 33 (332)
T ss_pred EEEEECCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 68995178899999998731899518999887
No 445
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=85.59 E-value=1.7 Score=22.26 Aligned_cols=68 Identities=18% Similarity=0.100 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHH
Q ss_conf 8999999998749533068224347762776201454124324434665787563026774257860664432554211
Q gi|254781024|r 123 VCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLI 201 (554)
Q Consensus 123 fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~ 201 (554)
+..-+.+.|+..|+ | +.++.++|+..|--|+-.|..+.-........ -+-=++++|.|+..++.-.|.
T Consensus 75 ~ld~l~~~A~~iga-------v-NTi~~~~g~l~G~NTD~~G~~~~l~~~~~~~~---~k~vlIlGaGGaarai~~al~ 142 (275)
T PRK00258 75 LADELSERARLAGA-------V-NTLVLEDGRLIGDNTDGIGFVRDLERLGLDLK---GKRILLLGAGGAARAVILPLL 142 (275)
T ss_pred CCCHHHHHHHHHCC-------E-EEEEEECCEEEEEECCHHHHHHHHHHHCCCCC---CCEEEEECCCCHHHHHHHHHH
T ss_conf 24602177887455-------4-58995599899983677899999998487856---875999888710799999999
No 446
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=85.55 E-value=1.9 Score=22.06 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=27.4
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCC--CEEEEEECCCC
Q ss_conf 799989-76899999999980899--73999978677
Q gi|254781024|r 17 VVIIGA-GPAGLAAAIRCKQINPH--LSVVILEKSAE 50 (554)
Q Consensus 17 VvIVGa-GPAG~saA~~La~~g~~--l~VlvlEK~~~ 50 (554)
|.|||| |--|+++|+.|+..+.. -.++|+|....
T Consensus 1 V~IIGA~G~VG~~~a~~l~~~~~~~~~el~L~Di~~~ 37 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEE 37 (263)
T ss_pred CEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf 9898779779999999998289999988999958987
No 447
>PRK12862 malic enzyme; Reviewed
Probab=85.50 E-value=1.7 Score=22.36 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=31.8
Q ss_pred HHCCCCCEEEECCCHHHHHHHHHHHHCCCCC-EEEEEECCCC
Q ss_conf 0103647799989768999999999808997-3999978677
Q gi|254781024|r 10 KDVFEYDVVIIGAGPAGLAAAIRCKQINPHL-SVVILEKSAE 50 (554)
Q Consensus 10 re~meyDVvIVGaGPAG~saA~~La~~g~~l-~VlvlEK~~~ 50 (554)
++--+.-|||.|||-||.+++..|..+|... .|++.|+.--
T Consensus 188 k~~~~~kiv~~GaGaa~~a~~~ll~~~G~~~~ni~~~D~~Gv 229 (761)
T PRK12862 188 KDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGV 229 (761)
T ss_pred CCHHHEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 856671899978878899999999983998101799946787
No 448
>PRK07232 malic enzyme; Reviewed
Probab=85.31 E-value=1.7 Score=22.26 Aligned_cols=41 Identities=17% Similarity=0.326 Sum_probs=32.0
Q ss_pred HHCCCCCEEEECCCHHHHHHHHHHHHCCCCC-EEEEEECCCC
Q ss_conf 0103647799989768999999999808997-3999978677
Q gi|254781024|r 10 KDVFEYDVVIIGAGPAGLAAAIRCKQINPHL-SVVILEKSAE 50 (554)
Q Consensus 10 re~meyDVvIVGaGPAG~saA~~La~~g~~l-~VlvlEK~~~ 50 (554)
++--+.-|||.|||-||.+++..|..+|... .|++.|+.--
T Consensus 182 k~~~~~kiv~~GaGaa~~a~~~ll~~~G~~~~ni~~~d~~Gv 223 (753)
T PRK07232 182 KKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGV 223 (753)
T ss_pred CCHHHEEEEEECCCHHHHHHHHHHHHCCCCHHCEEEEECCCC
T ss_conf 646671899978868889999999984998010799957786
No 449
>pfam00056 Ldh_1_N lactate/malate dehydrogenase, NAD binding domain. L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.
Probab=85.23 E-value=1.8 Score=22.22 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=28.1
Q ss_pred CEEEECCC-HHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 77999897-689999999998089973999978677
Q gi|254781024|r 16 DVVIIGAG-PAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 16 DVvIVGaG-PAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
-|.||||| -=|+++|+.|+..+.--.++|+|....
T Consensus 2 KV~IIGagg~VG~~~A~~l~~~~l~~elvL~D~~~~ 37 (142)
T pfam00056 2 KVAVVGAGGGVGSSLAFALALQGLADELVLVDINKD 37 (142)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 899989877899999999974796634788505776
No 450
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=85.23 E-value=1.8 Score=22.24 Aligned_cols=172 Identities=13% Similarity=0.110 Sum_probs=78.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEEE
Q ss_conf 64779998976899999999980899739999786778986402740333678886787264148854322436699997
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFL 93 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~l 93 (554)
...++||||=.=-+..+..|+++|..++++-+|+.... .+|... ...++|.+.+- +-.-+..+.+.+.-.+-
T Consensus 2 g~~iaviGGD~Rq~~l~~~L~~~g~~V~~~gf~~~~~~----~~~~~~-~~~~~~~~~~~---d~iIlPvpg~~d~g~i~ 73 (296)
T PRK08306 2 GMHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHG----FTGVAK-CSSLEEALSDV---DVIILPVPGTNDEGEVD 73 (296)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC----CCCEEE-ECCHHHHHHCC---CEEEECCCCCCCCCEEE
T ss_conf 94899978758999999999977997999835765556----676177-34678887239---99997883225896385
Q ss_pred CC--CCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCC
Q ss_conf 79--9767736543565446788268888898999999998749533068224347762776201454124324434665
Q gi|254781024|r 94 NA--QRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQ 171 (554)
Q Consensus 94 ~~--~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~ 171 (554)
+. +..+.+.... -..+++ +-.+--+.....|.+.+++.|+.++.=+.-.++.. .| .+-|.+.-+.-.-..
T Consensus 74 ~~~~~~~~~l~~~~-~~~l~~--~~~vf~G~~~~~l~~~~~~~~~~~~d~~e~d~vAi-~N----aipTAEGai~~ai~~ 145 (296)
T PRK08306 74 TVFSNEKLVLTKEL-LEKTPE--HCTIFSGIANPYLKELAETTGRKLIELFERDDVAI-YN----SIPTAEGAIMMAIEH 145 (296)
T ss_pred CCCCCCCCCHHHHH-HHHCCC--CCEEEEECCCHHHHHHHHHCCCCEEEEECCCHHHH-HC----CCCCHHHHHHHHHHC
T ss_conf 53467876322999-974699--98799955998999999975983676200203555-62----701489999999965
Q ss_pred CCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 7875630267742578606644325542112248
Q gi|254781024|r 172 GKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYS 205 (554)
Q Consensus 172 ~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~ 205 (554)
.|-....++++|..-|..|...-......+
T Consensus 146 ----tp~ti~gs~~lVlG~Gr~G~~lA~~l~~lG 175 (296)
T PRK08306 146 ----TPITIHGSNVLVLGFGRTGMTLARTLKALG 175 (296)
T ss_pred ----CCCCCCCCCEEEECCCHHHHHHHHHHHHCC
T ss_conf ----996324765899898689999999999779
No 451
>PTZ00325 malate dehydrogenase; Provisional
Probab=84.93 E-value=2 Score=21.86 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=27.7
Q ss_pred CCEEEECC-CHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 47799989-76899999999980899739999786
Q gi|254781024|r 15 YDVVIIGA-GPAGLAAAIRCKQINPHLSVVILEKS 48 (554)
Q Consensus 15 yDVvIVGa-GPAG~saA~~La~~g~~l~VlvlEK~ 48 (554)
+-|.|||| |-=|+++|+.|++.+.--.++|+|..
T Consensus 2 ~KV~IIGA~G~VG~s~A~~l~~~~~~~elvL~Di~ 36 (313)
T PTZ00325 2 FKVAVLGAAGGIGQPLSLLLKRNPYVSTLSLYDIV 36 (313)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 38999899986999999999838997779998089
No 452
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=84.80 E-value=1.5 Score=22.68 Aligned_cols=299 Identities=19% Similarity=0.252 Sum_probs=139.3
Q ss_pred CEEEECCCH-----------HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCE
Q ss_conf 779998976-----------899999999980899739999786778986402740333678886787264148854322
Q gi|254781024|r 16 DVVIIGAGP-----------AGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTV 84 (554)
Q Consensus 16 DVvIVGaGP-----------AG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~ 84 (554)
-|+|+|+|| ++-.|+..|+++| .++++|==.+| +||-+.=. -|.| -++ +
T Consensus 575 ~~lvlGSGp~RIGqgvEFDYc~Vh~~~aLr~~G--ye~ImiN~NPE----TVSTDyD~---sDrL----------YFE-p 634 (1089)
T TIGR01369 575 KVLVLGSGPNRIGQGVEFDYCCVHAVLALREAG--YETIMINYNPE----TVSTDYDT---SDRL----------YFE-P 634 (1089)
T ss_pred EEEEECCCCEECCCCEEEHHHHHHHHHHHHHCC--CEEEEEECCCC----CCCCCHHH---HHHC----------CCC-C
T ss_conf 689987845140663120567899999998729--95999977899----74366665---1011----------587-6
Q ss_pred EEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEE-HHHHHHHHHHHHHHCC-CEECCCCEEEEEEECCCCCEEEEEECC
Q ss_conf 43669999779976773654356544678826888-8898999999998749-533068224347762776201454124
Q gi|254781024|r 85 VKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVS-LGQVCRWLKNKAEALG-VEIYCGFTATEIYYGKKGEALGILTGE 162 (554)
Q Consensus 85 v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~-r~~fd~~L~~~Ae~~G-vei~~g~~v~~i~~~e~g~vvgv~t~~ 162 (554)
++.+++ ..+- ...+-+ +-||+ -++.-.-||++-++.| +.|+ ||....+-..||.
T Consensus 635 lt~E~V--------m~I~-----e~E~~~-GVIVq~GGQtp~nlA~~L~~~GG~~iL-GTS~~~ID~AEDR--------- 690 (1089)
T TIGR01369 635 LTFEDV--------MNII-----ELEKPE-GVIVQFGGQTPLNLAKELEEAGGVPIL-GTSPESIDRAEDR--------- 690 (1089)
T ss_pred CCCCCC--------EEHE-----EECCCC-EEEEECCCHHHHHHHHHHHHCCCCEEE-CCCHHHHHHHCCH---------
T ss_conf 350310--------0110-----005866-799974873267899999970893173-6885787513186---------
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 32443466578756302677425786066443255421122489988889899889888875165667888089950434
Q gi|254781024|r 163 KGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWP 242 (554)
Q Consensus 163 ~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~ 242 (554)
.|+ |.+-+.|+ +.... =..+..+-++.+.-. .+|||
T Consensus 691 --------------------~kF--------s~~l~~Lg----i~QP~--~~~a~s~eea~~~A~----------~iGYP 726 (1089)
T TIGR01369 691 --------------------EKF--------SELLDELG----IPQPE--WKIATSVEEAKEFAS----------EIGYP 726 (1089)
T ss_pred --------------------HHH--------HHHHHHCC----CCCCC--CCEECCHHHHHHHHH----------HCCCC
T ss_conf --------------------799--------99997158----79898--852728799999985----------46992
Q ss_pred CCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHH----HHCCC-HHHHHCCCCEEC-----CCCEECCCCC
Q ss_conf 7687664125766479805999983266656688988999998----60800-456503882630-----3513400542
Q gi|254781024|r 243 LDMNTSGGGFVYHFDDNLVSIGFVLHLDYRNPWISAYEELQRF----KTHPD-IRIIFTEGERLE-----YGARVISEGG 312 (554)
Q Consensus 243 ~~~~~~gggwiy~~~d~~~~iG~v~~ld~~~~~~~~~~~lq~f----k~hp~-i~~~l~gg~~~~-----yga~~ip~gg 312 (554)
.--.+. + .++.. .+.--.-...+.++++.- ..||- |.++++++..++ .|..++--|=
T Consensus 727 vlvRPS---Y--VLgG~--------aM~iv~~~eeL~~yl~~a~~~S~~~PVlidky~e~A~E~dVD~v~Dg~~v~i~gI 793 (1089)
T TIGR01369 727 VLVRPS---Y--VLGGR--------AMEIVYNEEELARYLEEAVEVSPEHPVLIDKYLEDAVEIDVDAVSDGEEVLIPGI 793 (1089)
T ss_pred EEECCC---C--CCCCC--------CHHEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCEEEEEEH
T ss_conf 898168---3--00336--------2100267889999999999720899769888528888999989972884899623
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHH-CCCCC-C-------CHHHHHHHHHHHHHH
Q ss_conf 12487423088799612323313664-35226899999999999999874-58865-3-------036789986420466
Q gi|254781024|r 313 WQSVPKLSFPGGSLIGCAAGFVNLLR-IKGSHNAIISGMLAAEKIVERLS-NGKKH-D-------DPIEIEDSWRQTQIG 382 (554)
Q Consensus 313 ~~s~pk~~~~g~lLvGDAAG~vnP~~-g~GI~~Am~SG~lAAEai~eal~-~g~~~-~-------~l~~Ye~~~~~s~~~ 382 (554)
..- .-.=++==|||+.++-|.+ -+.+-..|+. .++.|+.+|. .|-++ . .+.=-|-..|
T Consensus 794 ~EH----iE~AGVHSGDs~~~~Pp~~L~~~~~~~i~~---~~~~iA~~L~v~Gl~NiQf~~~~E~~~yVIE~NpR----- 861 (1089)
T TIGR01369 794 MEH----IEEAGVHSGDSTCVLPPQTLSEDIVKRIKD---IVRKIAKELNVKGLFNIQFVVKDEGEVYVIEVNPR----- 861 (1089)
T ss_pred HHH----HHHCCCCCCCHHHCCCCCCCCHHHHHHHHH---HHHHHHHHCCCCCCEEEEEEEECCCCEEEEEECCC-----
T ss_conf 123----421367613053117697778899999999---99999987066072224555616996799997174-----
Q ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCC------CCCCCCCCHHHCCC
Q ss_conf 78887422566887616046899989999885422656666------56778889654000
Q gi|254781024|r 383 KDLWIIRNIKPLLSRFGVFIGLSLGLMDIWIQKILGFSFLG------TLKHHKMDSCSLEA 437 (554)
Q Consensus 383 ~el~~~rn~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~d~~~~~~ 437 (554)
.+|-| |.+||. .|.-+ +...+.-+++..+.- ..++..++|-.+|-
T Consensus 862 ----ASRtV-PFvSKa---~Gipl--~~~A~~~~~G~~l~~~~~~~gv~~~~~~~~vavK~ 912 (1089)
T TIGR01369 862 ----ASRTV-PFVSKA---TGIPL--AKLAVRVMLGKKLEELGKDLGVGKEKESKYVAVKV 912 (1089)
T ss_pred ----CCCCC-CCEEEE---CCCCH--HHHHHHHHHCCCCHHCCCCCCCCCCCCCCEEEEEE
T ss_conf ----20665-413210---37887--99999997088201027540112326887279964
No 453
>PRK12861 malic enzyme; Reviewed
Probab=84.76 E-value=2 Score=21.88 Aligned_cols=40 Identities=25% Similarity=0.264 Sum_probs=31.5
Q ss_pred HHCCCCCEEEECCCHHHHHHHHHHHHCC--CCCEEEEEECCCC
Q ss_conf 0103647799989768999999999808--9973999978677
Q gi|254781024|r 10 KDVFEYDVVIIGAGPAGLAAAIRCKQIN--PHLSVVILEKSAE 50 (554)
Q Consensus 10 re~meyDVvIVGaGPAG~saA~~La~~g--~~l~VlvlEK~~~ 50 (554)
+.--+.-|||.|||-||.+++..|..+| .+ .+++.|+.--
T Consensus 183 k~~~~~kiv~~GaGaa~ia~~~l~~~~G~~~~-ni~~~D~~G~ 224 (762)
T PRK12861 183 KSIKEVKVVTSGAGAAALACLDLLVDLGLPVE-NIWVTDIEGV 224 (762)
T ss_pred CCHHHEEEEEECCCHHHHHHHHHHHHHCCCCC-CEEEEECCCC
T ss_conf 75656169996877889999999998399955-5899947785
No 454
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=84.45 E-value=2.1 Score=21.63 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=28.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 7999897689999999998089973999978677
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
|.|||+|-=|+++|+.|+..+.--.++|+|....
T Consensus 1 V~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~ 34 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEE 34 (300)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 9898968899999999986799887999818998
No 455
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.38 E-value=2.7 Score=20.92 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=29.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 7999897689999999998089973999978677
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
|.|||+|--|+++|+.|+..+.--.++|+|....
T Consensus 2 I~IIGaG~VG~~~A~~l~~~~~~~elvL~Di~~~ 35 (307)
T cd05290 2 LVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEG 35 (307)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 8999969899999999985699887999928898
No 456
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family; InterPro: IPR012839 This subset of the radical-SAM domain includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centred radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4 from EC, IPR012838 from INTERPRO) and the anaerobic ribonucleotide reductase activating enzyme (IPR012837 from INTERPRO). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in Escherichia coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterisation and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain, which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines..
Probab=84.23 E-value=0.34 Score=27.23 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=33.7
Q ss_pred CEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEE
Q ss_conf 22436699997799767736543565446788268888898999999998749533
Q gi|254781024|r 83 TVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEI 138 (554)
Q Consensus 83 ~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei 138 (554)
..|.+|..+|...++++++.- +. -+...+|-.-|.+.+.+.|+..
T Consensus 117 ~~~~~D~~fY~~SGGGvTlSG-GE----------Pl~Q~eF~~~LL~~c~~~gihT 161 (305)
T TIGR02494 117 RVVLRDSIFYRNSGGGVTLSG-GE----------PLLQPEFALALLKACRERGIHT 161 (305)
T ss_pred HHHHHHHHHHHHCCCEEEECC-CC----------CCCCHHHHHHHHHHHHHCCCCE
T ss_conf 999865566651399067348-71----------1401589999999997589946
No 457
>PTZ00117 malate dehydrogenase; Provisional
Probab=83.99 E-value=2.7 Score=20.94 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=28.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 77999897689999999998089973999978677
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
-|.|||+|--|+++|+.|++.+-. .++|+|..+.
T Consensus 3 KV~IIGaG~VG~~~A~~l~~~~~~-eivLiDi~~~ 36 (313)
T PTZ00117 3 KISIIGSGQIGAIVGLLLLQENLG-DVYLYDVIEG 36 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCC-EEEEEECCCC
T ss_conf 899989798999999999708998-7999958898
No 458
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=83.98 E-value=3 Score=20.65 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHH
Q ss_conf 89999999999999987458865303678998642--0466788874225
Q gi|254781024|r 344 NAIISGMLAAEKIVERLSNGKKHDDPIEIEDSWRQ--TQIGKDLWIIRNI 391 (554)
Q Consensus 344 ~Am~SG~lAAEai~eal~~g~~~~~l~~Ye~~~~~--s~~~~el~~~rn~ 391 (554)
--.+|+...++.+.+.+--... +-.+..+++|+ ....+|+++.||=
T Consensus 517 Et~essL~l~~~~L~~lG~~~~--~a~~~~~~fr~~d~~~l~~~~~~~~d 564 (615)
T PRK03562 517 ETFEGALKSGRLALESLGLGPY--EARERADRFRRFNIQMVEEMAPHEND 564 (615)
T ss_pred CHHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 6589999999999998099999--99999999999999999998643578
No 459
>KOG2495 consensus
Probab=83.93 E-value=0.51 Score=25.96 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=23.8
Q ss_pred HCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 10364779998976899999999980899739999786
Q gi|254781024|r 11 DVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKS 48 (554)
Q Consensus 11 e~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~ 48 (554)
+.-.--|||.|.|=+|.+....|-.-- ..|.|+.-.
T Consensus 52 ~~kKk~vVVLGsGW~a~S~lk~ldts~--YdV~vVSPR 87 (491)
T KOG2495 52 GGKKKRVVVLGSGWGAISLLKKLDTSL--YDVTVVSPR 87 (491)
T ss_pred CCCCCEEEEECCCHHHHHHHHHCCCCC--CCEEEECCC
T ss_conf 888753999857528899987526643--424996463
No 460
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.88 E-value=1.8 Score=22.17 Aligned_cols=33 Identities=18% Similarity=0.070 Sum_probs=26.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 79998976899999999980899739999786778
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEV 51 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~p 51 (554)
|+|+|.|-+|.++|..|.+.|. .|++-|+...+
T Consensus 3 i~V~GlG~sG~s~a~~L~~~g~--~~i~dD~~~~~ 35 (401)
T PRK03815 3 ISLFGYGKTTKALARFFVKNGG--VDIYDDKFTEP 35 (401)
T ss_pred EEEEEECHHHHHHHHHHHHCCC--EEEEECCCCCC
T ss_conf 9998477718999999994879--79998999862
No 461
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.64 E-value=3 Score=20.61 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=28.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 7999897689999999998089973999978677
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
|.|||+|--|+++|+.|+..+.--.++|+|....
T Consensus 3 I~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~ 36 (308)
T cd05292 3 VAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 9999948889999999986799887999918898
No 462
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=83.51 E-value=2.8 Score=20.85 Aligned_cols=33 Identities=15% Similarity=0.340 Sum_probs=28.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 7799989768999999999808997399997867
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
-|+|||+|==|+.+|..|++.|.+ ++.++|...
T Consensus 1 kVlivG~GglG~~va~~L~~~Gv~-~i~ivD~D~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVG-KITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCC-CEEEEECCC
T ss_conf 999999798999999999993797-199997898
No 463
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=83.07 E-value=2.6 Score=21.09 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=28.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 47799989768999999999808997399997867
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
--|+|||+|-.|..++.+|++.|.. +|.+.-|..
T Consensus 13 ~~vlVIGaG~~~~~~~~~L~~~g~~-~i~v~nRt~ 46 (134)
T pfam01488 13 KKVLLIGAGEMARLAAKHLLSKGAK-KITIANRTL 46 (134)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCC-EEEEECCCH
T ss_conf 9899999609999999999975998-899954757
No 464
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=83.03 E-value=2.8 Score=20.88 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=27.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 79998976899999999980899739999786
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKS 48 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~ 48 (554)
|+|||+|--|+-.+..|+..|-+ ++.|+|..
T Consensus 2 VlvvGaGglG~e~lk~La~~Gvg-~i~ivD~D 32 (312)
T cd01489 2 VLVVGAGGIGCELLKNLVLTGFG-EIHIIDLD 32 (312)
T ss_pred EEEECCCHHHHHHHHHHHHCCCC-EEEEECCC
T ss_conf 89988888899999999982898-59997199
No 465
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=82.95 E-value=0.39 Score=26.79 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=24.1
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCEE
Q ss_conf 056651566670475730068888625
Q gi|254781024|r 514 NNYIIHAQNCIHCKACVIKDPNQNIEW 540 (554)
Q Consensus 514 ~~~~i~~~nc~hcktc~ik~p~~~i~w 540 (554)
.+..||.+.|++|++|...+|.+-|..
T Consensus 44 ~rPvvD~eKCi~Cg~C~~~CP~~AI~~ 70 (105)
T PRK09623 44 FIPVVDESKCVKCYICWKFCPEPAIYI 70 (105)
T ss_pred ECCCCCHHHCCCCCCHHHHCCCCCEEE
T ss_conf 247124625848513464709980897
No 466
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=82.95 E-value=0.7 Score=25.03 Aligned_cols=52 Identities=19% Similarity=0.358 Sum_probs=37.1
Q ss_pred EECCCCCHHCCHHHHCCHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 6175544001735417813213586006889659970566515666704757300688886
Q gi|254781024|r 478 IKDKDLQKKSELRIYSGPSMRYCPAGVYEWHQNNDENNYIIHAQNCIHCKACVIKDPNQNI 538 (554)
Q Consensus 478 ~~~~~~~~~~~~~~~~~p~~~~cpa~vye~~~~~~~~~~~i~~~nc~hcktc~ik~p~~~i 538 (554)
+.|.+.|+.. .-|.-|||-++-. ..+++.+.||..-|--|+-|.-.+|....
T Consensus 52 V~d~ekCi~C------~~Cw~yCPD~aI~---~~~~k~~~iDYdyCKGCGICa~vCP~~~k 103 (130)
T PRK09625 52 VHNNDICINC------FNCWVYCPDASIL---SRDKKLKGVDYSHCKGCGVCVDVCPTNPK 103 (130)
T ss_pred CCCHHHCCCC------CHHHCCCCCCEEE---EECCEEEEECHHHCCCCCHHHHHCCCCCC
T ss_conf 5175358972------3000308983788---23891356576770062214654799960
No 467
>PRK06273 ferredoxin; Provisional
Probab=82.83 E-value=0.6 Score=25.46 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=31.7
Q ss_pred CHHHCCCCCEEEEEEECCCC---------EEEEEECCCCCCCCCCCCCCC
Q ss_conf 81321358600688965997---------056651566670475730068
Q gi|254781024|r 494 GPSMRYCPAGVYEWHQNNDE---------NNYIIHAQNCIHCKACVIKDP 534 (554)
Q Consensus 494 ~p~~~~cpa~vye~~~~~~~---------~~~~i~~~nc~hcktc~ik~p 534 (554)
+-|...||.+.-|++..+.. ....||+++||||=-|-==+|
T Consensus 57 ~GCaNvCPT~AIeM~~~ePVkite~~vK~~iP~id~ekCV~C~yCHDFCP 106 (163)
T PRK06273 57 GGCANACPTKAIEMIPVEPVKITETYVKEAIPKIDYEKCVYCLYCHDFCP 106 (163)
T ss_pred CCCCCCCCCCCEEEEECCCEEEECCHHHHCCCCCCHHHEEEEEECCCCCH
T ss_conf 55002388775577765656741103331266467332079887365243
No 468
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=82.67 E-value=3.1 Score=20.53 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=28.3
Q ss_pred CEEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 7799989-7689999999998089973999978677
Q gi|254781024|r 16 DVVIIGA-GPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 16 DVvIVGa-GPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
.|.|||| |--|+++|+.|+..+.--.++|+|....
T Consensus 2 KV~IiGAaG~VG~~~a~~l~~~~~~~el~LiD~~~~ 37 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKS 37 (309)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 899999997699999999983799875999605564
No 469
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC; InterPro: IPR011967 This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring . The sequences included in this entry are all found in possible operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN . Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. .
Probab=82.67 E-value=1.2 Score=23.32 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=31.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 64779998976899999999980899739999786778
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEV 51 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~p 51 (554)
...|+|||+|-=|+--|-..|++|+ .|.|.|-.++.
T Consensus 5 ~v~vaVIGaGaMGaGIA~VAA~aGH--~V~LYD~r~eA 40 (508)
T TIGR02279 5 VVKVAVIGAGAMGAGIAQVAARAGH--QVLLYDIRAEA 40 (508)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCC--EEEEECCCHHH
T ss_conf 1068996468521038999982598--48872288899
No 470
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=82.50 E-value=2.6 Score=21.11 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=28.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 7999897689999999998089973999978677
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
|.|||.|=-|+..|..||..| .+|+.+|....
T Consensus 6 I~ViGlGYVGL~~a~~lA~~G--~~Vig~D~d~~ 37 (415)
T PRK11064 6 ISVIGLGYIGLPTAAAFASRQ--KQVIGVDINQH 37 (415)
T ss_pred EEEECCCHHHHHHHHHHHHCC--CCEEEEECCHH
T ss_conf 999886877899999999688--94899989999
No 471
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=82.18 E-value=2.7 Score=20.98 Aligned_cols=31 Identities=23% Similarity=0.346 Sum_probs=25.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 477999897689999999998089973999978
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEK 47 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK 47 (554)
--|+|||||..+..=+..|.+.|. .|.|+=.
T Consensus 11 k~vLVVGGG~vA~rK~~~Ll~~gA--~VtVvsp 41 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGA--HITVISP 41 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC--EEEEECC
T ss_conf 869998898999999999986899--6999869
No 472
>pfam03435 Saccharop_dh Saccharopine dehydrogenase. This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase.
Probab=82.17 E-value=2.3 Score=21.45 Aligned_cols=34 Identities=29% Similarity=0.362 Sum_probs=28.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 7999897689999999998089973999978677
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
|+|+|+|--|++++..|++...-.+|.|.++..+
T Consensus 1 IlvlGaG~vG~~~~~~L~~~~~~~~i~vad~~~~ 34 (384)
T pfam03435 1 VLIIGAGGVGQGVAPLLARHGDVDEITVADRSLE 34 (384)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCCEEEEEECCHH
T ss_conf 9898977879999999972899886999989889
No 473
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=82.15 E-value=3.5 Score=20.14 Aligned_cols=34 Identities=32% Similarity=0.383 Sum_probs=28.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 7999897689999999998089973999978677
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
|.|||+|-=|+++|+.|+..+.--.++|+|....
T Consensus 3 I~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~ 36 (306)
T cd05291 3 VVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 9999969889999999985799877999818987
No 474
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=82.03 E-value=3.1 Score=20.50 Aligned_cols=36 Identities=28% Similarity=0.316 Sum_probs=30.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 3647799989768999999999808997399997867
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
.+-.|+|||+|==|+.+|..|+..|-+ ++.++|-..
T Consensus 18 ~~s~VlVvG~GGLG~~v~~~La~aGVg-~i~ivD~D~ 53 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGID-SITIVDHRL 53 (198)
T ss_pred HHCCEEEECCCHHHHHHHHHHHHCCCC-EEEEEECCC
T ss_conf 709899987788999999999974998-699995996
No 475
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=81.92 E-value=0.39 Score=26.77 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=18.0
Q ss_pred HCCHHHCCCCCEEEEEEEC------C---CCEEEEEECCCCCCCCCCC
Q ss_conf 1781321358600688965------9---9705665156667047573
Q gi|254781024|r 492 YSGPSMRYCPAGVYEWHQN------N---DENNYIIHAQNCIHCKACV 530 (554)
Q Consensus 492 ~~~p~~~~cpa~vye~~~~------~---~~~~~~i~~~nc~hcktc~ 530 (554)
|=|-|+..||.+.-.+.++ + -..+..+...+|..|+.+=
T Consensus 77 fCG~C~evCPt~AI~lt~efElA~~~k~dl~~~~~~~~~~C~~CG~~f 124 (178)
T PRK12387 77 FCGRCEEVCPTAAIKLSQEYELAVWKKEDLLQQSRFALCNCRVCGRPF 124 (178)
T ss_pred CCCHHHHHCCCCCCCCCHHHHHHHCCHHHCEEEEEEEEEECCCCCCCC
T ss_conf 867156668824223361877541255344567687022156347805
No 476
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=81.88 E-value=1.6 Score=22.52 Aligned_cols=63 Identities=21% Similarity=0.230 Sum_probs=31.1
Q ss_pred EEEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHH-HCCCCEECCCCEECCCCCCCCCCCCCCCCEEEEC
Q ss_conf 5999983266656688988999998608004565-0388263035134005421248742308879961
Q gi|254781024|r 261 VSIGFVLHLDYRNPWISAYEELQRFKTHPDIRII-FTEGERLEYGARVISEGGWQSVPKLSFPGGSLIG 328 (554)
Q Consensus 261 ~~iG~v~~ld~~~~~~~~~~~lq~fk~hp~i~~~-l~gg~~~~yga~~ip~gg~~s~pk~~~~g~lLvG 328 (554)
..||-|.-...+.|.+...+++..+|.-..|-+. +..|-+++-. |.- ..+.|....+|++--|
T Consensus 234 lvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~Et~-~~T----Th~~PtY~~~gvvhY~ 297 (371)
T COG0686 234 LVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCFETS-HPT----THDDPTYEVDGVVHYG 297 (371)
T ss_pred EEEEEEEECCCCCCEEHHHHHHHHCCCCCEEEEEEECCCCCEECC-CCC----CCCCCCEEECCEEEEE
T ss_conf 798888845887860106999974479858999987488815304-543----5789701635779996
No 477
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=81.88 E-value=0.99 Score=23.97 Aligned_cols=14 Identities=7% Similarity=0.005 Sum_probs=8.4
Q ss_pred CEEEECCCCCCCCC
Q ss_conf 87996123233136
Q gi|254781024|r 323 GGSLIGCAAGFVNL 336 (554)
Q Consensus 323 g~lLvGDAAG~vnP 336 (554)
.+.++|.--.+++|
T Consensus 651 amYv~GEd~~~sd~ 664 (978)
T COG3383 651 AMYVVGEDPLLSDP 664 (978)
T ss_pred EEEEECCCCEECCC
T ss_conf 89995355300379
No 478
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=81.45 E-value=2.5 Score=21.18 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=45.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHH--HHHHHHHHCCCCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q ss_conf 23313664352268999999999--9999987458865303678998642---046678887422566887
Q gi|254781024|r 331 AGFVNLLRIKGSHNAIISGMLAA--EKIVERLSNGKKHDDPIEIEDSWRQ---TQIGKDLWIIRNIKPLLS 396 (554)
Q Consensus 331 AG~vnP~~g~GI~~Am~SG~lAA--Eai~eal~~g~~~~~l~~Ye~~~~~---s~~~~el~~~rn~~~~~~ 396 (554)
.||-|..++.+.+..|.+-++.. +.|.++|. .+.+.|..+++.++. .-+.+-|.++|.+|..+-
T Consensus 221 gGfrD~TRIA~s~p~mW~dI~~~N~~~il~~ld--~~~~~L~~l~~~i~~~d~~~l~~~~~~a~~~R~~l~ 289 (307)
T PRK07502 221 SGFRDFTRIAASDPTMWRDVFLHNKDAVLEMLG--RFTEDLAALQRAIRWGDGEALFDLFTRTRAIRRGII 289 (307)
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 774432346149857999999980999999999--999999999999983599999999999999999999
No 479
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=81.39 E-value=2.6 Score=21.11 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=28.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 799989768999999999808997399997867
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
|+|||||-=|+..|..|.+.|-. ++.++|.+.
T Consensus 2 vLllGaGtLGc~var~L~~~GV~-~it~VD~~~ 33 (307)
T cd01486 2 CLLLGAGTLGCNVARNLLGWGVR-HITFVDSGK 33 (307)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-EEEEEECCE
T ss_conf 79985775206999999983698-589984998
No 480
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=81.29 E-value=2.7 Score=20.92 Aligned_cols=69 Identities=10% Similarity=-0.072 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHH
Q ss_conf 89899999999874953306822434776277620145412432443466578756302677425786066443255421
Q gi|254781024|r 121 GQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQL 200 (554)
Q Consensus 121 ~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l 200 (554)
-.+...|.+.|+..|+ | ..++.++|..+|--|+-.|..+.-.... ...+ ..-++++|-|+...+.-.|
T Consensus 74 ~~~lD~ld~~A~~iGA-------V-NTiv~~~g~l~G~NTD~~G~~~~l~~~~-~~~~---~~~lilGaGGaarai~~aL 141 (272)
T PRK12550 74 IPLVDELDPSAKAIES-------V-NTIVNTDGHLKAYNTDYIAIAQLLEEYQ-VPPD---AVVALRGSGGMAKAVAAAL 141 (272)
T ss_pred HHHHCCCCHHHHHHCC-------E-EEEEEECCEEEEEECCHHHHHHHHHHCC-CCCC---CEEEEECCCHHHHHHHHHH
T ss_conf 9985436888997275-------5-4799559989999377899999999708-8867---7389973623389999999
Q ss_pred H
Q ss_conf 1
Q gi|254781024|r 201 I 201 (554)
Q Consensus 201 ~ 201 (554)
.
T Consensus 142 ~ 142 (272)
T PRK12550 142 R 142 (272)
T ss_pred H
T ss_conf 9
No 481
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=81.06 E-value=2.5 Score=21.18 Aligned_cols=58 Identities=19% Similarity=0.289 Sum_probs=38.5
Q ss_pred EEEECCCCCHHCCHHHHCCHHHCCCC----CEEEEEEECCCCEEEEE-------ECCCCCCCCCCCCCCCCCCCE
Q ss_conf 79617554400173541781321358----60068896599705665-------156667047573006888862
Q gi|254781024|r 476 LLIKDKDLQKKSELRIYSGPSMRYCP----AGVYEWHQNNDENNYII-------HAQNCIHCKACVIKDPNQNIE 539 (554)
Q Consensus 476 l~~~~~~~~~~~~~~~~~~p~~~~cp----a~vye~~~~~~~~~~~i-------~~~nc~hcktc~ik~p~~~i~ 539 (554)
....|.+-|+...+ |+|+|- .++..+...+.+.+... +..+|+.|+.|-..+|..-|.
T Consensus 140 ~i~~D~~rCI~CgR------CVr~C~evqg~~ai~~~~RG~~~~I~~~~~~~~~~s~~C~~CG~Cv~vCPvGAL~ 208 (236)
T PRK07569 140 RFGIDHNRCVLCTR------CVRVCDEIEGAHTWDVAGRGVNSRVIADLNQPWGTSDACTSCGKCVQACPTGAIF 208 (236)
T ss_pred CEEECCCCCCCCCH------HHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHCC
T ss_conf 46744773860877------9988875328736886147988888367788744445521256534219202265
No 482
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=80.85 E-value=3.2 Score=20.43 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=25.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 6477999897689999999998089973999978
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEK 47 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK 47 (554)
..-|+|||||..+.-=+..|.+.|. +|.|+-.
T Consensus 24 klkvLVVGGG~VA~RKi~~Ll~agA--~VtVVSP 55 (222)
T PRK05562 24 KIKVLVIGGGKAAFIKGKTFLKKGC--YVEILSK 55 (222)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC--EEEEECC
T ss_conf 7669999987999999999987899--8999878
No 483
>pfam00732 GMC_oxred_N GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
Probab=80.81 E-value=2.9 Score=20.77 Aligned_cols=68 Identities=24% Similarity=0.368 Sum_probs=44.9
Q ss_pred EHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCC-CCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHH
Q ss_conf 8889899999999874953306822434776277-62014541243244346657875630267742578606644325
Q gi|254781024|r 119 SLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKK-GEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSL 196 (554)
Q Consensus 119 ~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~-g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~l 196 (554)
+.+....||.. +...+..|++++.|+.++++++ .+++||...+.... .+.....+|-||+|-|+-.+-
T Consensus 126 R~ss~~ayl~~-~~~~nl~v~t~~~V~rI~~~~~~~rA~GV~~~~~~~~---------~~~~~~a~keVILsAGai~SP 194 (218)
T pfam00732 126 KQSTARTWLRP-ALERNLRILTGAKAEKIIILGRGGRAVGVEARDGGGG---------IKRLITAAKEVVVAAGALNTP 194 (218)
T ss_pred EECCCHHCCCH-HHCCCEEEECCCEEEEEEEECCCCEEEEEEEEECCCC---------EEEEEEECCEEEECCCHHHHH
T ss_conf 83610200142-1216268850767989999268888999999989998---------899999899999919858779
No 484
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=80.77 E-value=3.8 Score=19.89 Aligned_cols=33 Identities=27% Similarity=0.261 Sum_probs=27.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEE-EEECC
Q ss_conf 647799989768999999999808997399-99786
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVV-ILEKS 48 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~Vl-vlEK~ 48 (554)
.--|+|-|.|--|..+|.+|.+.| .+|+ |-|..
T Consensus 31 g~~v~IqG~GnVG~~~a~~L~~~G--akvv~vsD~~ 64 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEAG--AKVVAVSDSD 64 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCC
T ss_conf 999999898899999999999879--9599998478
No 485
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=80.68 E-value=3.3 Score=20.35 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=27.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 79998976899999999980899739999786
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKS 48 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~ 48 (554)
|+|||+|==|+-.+..|+..|-+ ++.++|..
T Consensus 2 VlvvGaGglGce~~k~La~~Gvg-~i~iiD~D 32 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALMGFG-QIHVIDMD 32 (234)
T ss_pred EEEECCCHHHHHHHHHHHHCCCC-EEEEECCC
T ss_conf 89994888799999999983998-69997599
No 486
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=80.33 E-value=3.4 Score=20.26 Aligned_cols=30 Identities=30% Similarity=0.330 Sum_probs=24.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 47799989768999999999808997399997
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILE 46 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlE 46 (554)
--|+|||||+-+.-=+..|.+.|. .|.|+-
T Consensus 14 k~vLVvGGG~VA~rK~~~Ll~~ga--~VtVvs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGA--FVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC--EEEEEC
T ss_conf 879998898999999999987879--699999
No 487
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=80.21 E-value=3.3 Score=20.36 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=28.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 7999897689999999998089973999978677
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
|.|||.|==|+..|..||..| .+|+.+|....
T Consensus 3 I~ViGlGyVGl~~a~~lA~~G--~~V~g~D~d~~ 34 (411)
T TIGR03026 3 IAVIGLGYVGLPLAALLADLG--HEVTGVDIDQE 34 (411)
T ss_pred EEEECCCHHHHHHHHHHHHCC--CCEEEEECCHH
T ss_conf 999897877999999999489--94899989999
No 488
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.04 E-value=2.5 Score=21.18 Aligned_cols=30 Identities=10% Similarity=0.327 Sum_probs=23.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 779998976899999999980899739999786
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKS 48 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~ 48 (554)
-|+|+|.|-+|.++|..|++.+ .+.+.+-.
T Consensus 8 ~v~V~GlG~sG~a~~~~L~~~~---~~~~~dd~ 37 (450)
T PRK01368 8 KIGVFGLGKTGISVYEELQNKY---DLIVYDDL 37 (450)
T ss_pred EEEEEEECHHHHHHHHHHHHCC---CEEEEECC
T ss_conf 0899958787999999997199---98999899
No 489
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase; InterPro: IPR011895 The oxidative decarboxylation of pyruvate to acetyl-CoA, a central step in energy metabolism, can occur by two different mechanisms . In mitochondria and aerobic bacteria this reaction is catalysed by the multienzyme complex pyruvate dehydrogenase using NAD as electron acceptor. In anaerobic organisms, however, this reaction is reversibly catalysed by a single enzyme using either ferrodoxin or flavodoxin as the electron acceptor. Pyruvate:ferrodoxin/flavodoxin reductases (PFORs) in this entry occur in both obligately and facultatively anaerobic bacteria and also some eukaryotic microorganisms. These proteins are single-chain enzymes containing a thiamin pyrophosphate cofactor for the cleavage of carbon-carbon bonds next to a carbonyl group, and iron-sulphur clusters for electron transfer. The Desulfovibrio africanus enzyme is currently the only PFOR whose three dimensional structure is known , . It is a homodimer where each subunit contains one thiamin pyrophosphate cofactor and two ferrodoxin-like 4Fe-S clusters and an atypical 4Fe-S cluster. Each monomer is composed of seven domains - domains I, II and VI make intersubunit contacts, while domains III, IV and V are located at the suface of the dimer, and domain VII forms a long arm extending over the other subunit. The cofactor is bound at the interface of domains I and VI and is proximal to the atypical 4Fe-S bound by domain VI, while the ferrodoxin-like 4Fe-S clusters are bound by domain V. Comparison of this enzyme with the multi-chain PFORs shows a correspondance between the domains in this enzyme and the subunits of the multi-chain enzymes.; GO: 0005506 iron ion binding, 0016903 oxidoreductase activity acting on the aldehyde or oxo group of donors, 0006118 electron transport.
Probab=80.02 E-value=0.52 Score=25.89 Aligned_cols=397 Identities=14% Similarity=0.156 Sum_probs=166.2
Q ss_pred EEEEEECCCCCCCCCCCCCEECHHHHHHH--CCCHHHHCCCCCC-CEEEEEEEEEECCCCCEECCCCC-CCCCCCCCCCE
Q ss_conf 39999786778986402740333678886--7872641488543-22436699997799767736543-56544678826
Q gi|254781024|r 41 SVVILEKSAEVGAHILSGAIIDPIGIDSL--LPRWREDKGHPFH-TVVKRDLYWFLNAQRSIQIPHFC-LPDFMDNKEHY 116 (554)
Q Consensus 41 ~VlvlEK~~~pG~~i~sG~vl~p~aL~eL--~Pd~~e~~g~pl~-~~v~~d~~~~l~~~~~~~~p~~~-~p~~~~~~g~y 116 (554)
+++||||-.|||+- |+ |--||-. +-+-.+...+|++ .|+. +.. ++-|..-. .|-
T Consensus 319 ~IAVLDRtKEPGa~---GE---PLYLDV~~A~~e~~~~~KCPf~~~P~I------~GG--RYGLgSKe~~Pa-------- 376 (1194)
T TIGR02176 319 RIAVLDRTKEPGAA---GE---PLYLDVRSAFYEMQAEKKCPFESMPVI------VGG--RYGLGSKEFTPA-------- 376 (1194)
T ss_pred EEEEECCCCCCCCC---CC---CHHHHHHHHHHCCCCCCCCCCCCCCEE------EEE--ECCCCCCCCCCC--------
T ss_conf 22212355688655---68---448889988630400168886567858------863--026753345733--------
Q ss_pred EEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCC-CCCCCCCEEEEEEEE-EEEECCCCC
Q ss_conf 888889899999999874953306822434776277620145412432443466-578756302677425-786066443
Q gi|254781024|r 117 IVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGT-QGKHYIAPMLLLSKY-MLVGEGACG 194 (554)
Q Consensus 117 iv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~-~~~~~~~g~~i~Ak~-vI~AdG~~s 194 (554)
.-.+.||..-+++..- .+...||+.-+.....-... +.-.+++...++|++ =+||||--|
T Consensus 377 -mvkaVFDNL~~ers~~-----------------K~~FTvGI~DDVT~TSL~~dn~~~~~~~~~~~~a~FyGLGsDGTVG 438 (1194)
T TIGR02176 377 -MVKAVFDNLEAERSAP-----------------KNHFTVGIDDDVTKTSLPVDNETLDLTPKSTIQAKFYGLGSDGTVG 438 (1194)
T ss_pred -CEEEEEECCCCCCCCC-----------------CCCCCEEEECCCCCCCHHCCCCCCCCCCCCCEEEEEECCCCCCCCC
T ss_conf -0132210110223678-----------------7763044441777653121784543487861688653168976211
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEEEECC--CCEEEEE-EEECCCC
Q ss_conf 255421122489988889899889888875165667888089950434768766412576647--9805999-9832666
Q gi|254781024|r 195 SLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMNTSGGGFVYHFD--DNLVSIG-FVLHLDY 271 (554)
Q Consensus 195 ~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~~~gggwiy~~~--d~~~~iG-~v~~ld~ 271 (554)
.= |..++-.+-+. ..|++ -+|.| +..-.||.-+-|+. +..+.=. +|..-||
T Consensus 439 AN-K~aIKIIGdnT----D~yAQ-------------------ayF~Y--DSKKSGG~T~SHLRFG~~pIrStYLv~~aDf 492 (1194)
T TIGR02176 439 AN-KNAIKIIGDNT----DKYAQ-------------------AYFSY--DSKKSGGITVSHLRFGEKPIRSTYLVTEADF 492 (1194)
T ss_pred CC-CCCEEECCCCC----CCCCE-------------------EEECC--CEECCCCCCEECCCCCCCCCCCCCCCCCCCE
T ss_conf 26-34233214134----77220-------------------22010--1010487612002368788877544668751
Q ss_pred CCCCCCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCC-----CCCCCE-EEECCCCCCC-CCCCCCCHHH
Q ss_conf 56688988999998608004565038826303513400542124874-----230887-9961232331-3664352268
Q gi|254781024|r 272 RNPWISAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPK-----LSFPGG-SLIGCAAGFV-NLLRIKGSHN 344 (554)
Q Consensus 272 ~~~~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk-----~~~~g~-lLvGDAAG~v-nP~~g~GI~~ 344 (554)
-..|...|-..-... +.+=+||+-+--....-++-=++-+|. +..+.. +=+=||--.- ..--|.=|++
T Consensus 493 VACH~~aYl~~yDvl-----kgLKkgGTFlLNs~w~s~e~~~~~LP~~vkr~la~k~ikFYtIdA~kiA~~~GLG~RIN~ 567 (1194)
T TIGR02176 493 VACHNPAYLETYDVL-----KGLKKGGTFLLNSPWASDEELDKHLPNEVKRYLAEKEIKFYTIDAVKIAQEVGLGNRINT 567 (1194)
T ss_pred EECCHHHHHHHHHHH-----HCCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHCCCCEECHHHHHHHHHCCCCCHHHH
T ss_conf 005627887687876-----133568757875466884689874687789999723545101368889877078844899
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999999999874588653-03678998642046678887422566887616046899989999885422656666
Q gi|254781024|r 345 AIISGMLAAEKIVERLSNGKKHD-DPIEIEDSWRQTQIGKDLWIIRNIKPLLSRFGVFIGLSLGLMDIWIQKILGFSFLG 423 (554)
Q Consensus 345 Am~SG~lAAEai~eal~~g~~~~-~l~~Ye~~~~~s~~~~el~~~rn~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~ 423 (554)
.|.|+...==-| =+.+ .+..-.+..++|+=.|=.+-|. .-...+|+.+..+-.-..|-
T Consensus 568 iMQtAFFKla~v-------lP~e~Av~~lK~~I~ksYGKKG~~vV~--------------~N~~AvD~~v~~l~~v~vp~ 626 (1194)
T TIGR02176 568 IMQTAFFKLAGV-------LPFEKAVDLLKKSIEKSYGKKGEEVVQ--------------KNIKAVDKAVESLHEVKVPA 626 (1194)
T ss_pred HHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHCCCCCHHHHH--------------HHHHHHHHHHHCCEECCCCH
T ss_conf 999889987157-------987899999889988504897778898--------------77999977733245324763
Q ss_pred CCCCCCCCHHH--CCCHHHC-----CCCCCCCCCCCCC---CCC---CCCHHCCCCCCCCCCCC--EEEEECCCCCHHCC
Q ss_conf 56778889654--0005643-----7444878877642---112---32111037889988862--17961755440017
Q gi|254781024|r 424 TLKHHKMDSCS--LEAASQH-----KKIDYPKPDGKLT---FDI---MSSLFLAKVKYVKEQPM--HLLIKDKDLQKKSE 488 (554)
Q Consensus 424 ~~~~~~~d~~~--~~~~~~~-----~~i~~~kpdg~~~---fd~---~~~v~~s~~~h~~~qp~--Hl~~~~~~~~~~~~ 488 (554)
+-+....++.. .+-+.++ .||.--+=| .|+ |.. .|-.|=+||..=|=--. |+=+=.++.|+++|
T Consensus 627 ~w~~~~~~~~~ri~~~~~eFV~nv~~pi~~q~GD-~lpVS~~~~~GmeDG~fPlGTt~~EKRgvA~~vP~W~~d~CiqCn 705 (1194)
T TIGR02176 627 EWKDAEEEPKARIAEDAPEFVKNVVRPIAAQEGD-DLPVSAFPARGMEDGTFPLGTTAFEKRGVALEVPVWKSDNCIQCN 705 (1194)
T ss_pred HHHCCHHCCCCCCCCCCCHHHHHHHHHHHHCCCC-CCCHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 6614112377554774747899988888625889-876577743888688886202003453120318705656653478
Q ss_pred HHHHCCHHHCCCC-----CEEEEE-----------EECC-C------CEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 3541781321358-----600688-----------9659-9------705665156667047573006888
Q gi|254781024|r 489 LRIYSGPSMRYCP-----AGVYEW-----------HQNN-D------ENNYIIHAQNCIHCKACVIKDPNQ 536 (554)
Q Consensus 489 ~~~~~~p~~~~cp-----a~vye~-----------~~~~-~------~~~~~i~~~nc~hcktc~ik~p~~ 536 (554)
-|.--|| .-||+= +.+. + +-+.|||..-|.=|.-|.=.||-.
T Consensus 706 ------qCa~VCPHaaIR~~l~~~ee~~~AP~~F~~~d~kGK~~~g~kyrIQvs~~DCtGCglCvd~CPa~ 770 (1194)
T TIGR02176 706 ------QCAFVCPHAAIRPFLLDEEELEKAPEGFKSLDAKGKELEGLKYRIQVSVEDCTGCGLCVDICPAK 770 (1194)
T ss_pred ------CCCCCCCHHHHHHHHCCCHHHHCCCCCCEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
T ss_conf ------85433764787776427157635898647713436788987006874275035763420358588
No 490
>pfam09257 BCMA-Tall_bind BCMA, TALL-1 binding. Members of this family, which are predominantly found in the tumour necrosis factor receptor superfamily member 17, BCMA, are required for binding to tumour necrosis factor ligand TALL-1.
Probab=80.01 E-value=0.79 Score=24.66 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=0.0
Q ss_pred CCEEEEECCCCCHHCCHHHHCCHHHCCCCCEE
Q ss_conf 62179617554400173541781321358600
Q gi|254781024|r 473 PMHLLIKDKDLQKKSELRIYSGPSMRYCPAGV 504 (554)
Q Consensus 473 p~Hl~~~~~~~~~~~~~~~~~~p~~~~cpa~v 504 (554)
||||+-.+..-|. ||||||-|.+
T Consensus 16 pc~lrcs~~tpp~---------~cq~yc~as~ 38 (39)
T pfam09257 16 PCQLRCSSNTPPL---------TCQRYCNASV 38 (39)
T ss_pred CCEEECCCCCCCC---------CCCCCCCCCC
T ss_conf 5023358999897---------3510136555
No 491
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=79.91 E-value=3.1 Score=20.52 Aligned_cols=32 Identities=31% Similarity=0.451 Sum_probs=0.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 7999897689999999998089973999978677
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~ 50 (554)
|.|+|||.=|++.|..|++.+ .+|.+.-+..+
T Consensus 4 I~ViGaGawGtAlA~~la~n~--~~V~lw~r~~~ 35 (325)
T PRK00094 4 IAVLGAGSWGTALAILLARNG--HDVVLWGRDPE 35 (325)
T ss_pred EEEECCCHHHHHHHHHHHHCC--CEEEEEEECHH
T ss_conf 999898999999999999789--97899983899
No 492
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=79.83 E-value=3.2 Score=20.46 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=0.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 799989768999999999808997399997867
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
|+|||.|=-||-++-.|+|.|-+ ++.|+|+..
T Consensus 33 V~VvGiGGVGSw~veALaRsGig-~itlID~D~ 64 (263)
T COG1179 33 VCVVGIGGVGSWAVEALARSGIG-RITLIDMDD 64 (263)
T ss_pred EEEEECCCHHHHHHHHHHHCCCC-EEEEEECHH
T ss_conf 89994584539999999981888-189971201
No 493
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=79.71 E-value=3.7 Score=19.95 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=0.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCC--EEEEEECC
Q ss_conf 799989768999999999808997--39999786
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHL--SVVILEKS 48 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l--~VlvlEK~ 48 (554)
|+|.|||-||.++|..|...|. - +|.++|+.
T Consensus 202 iv~~GAGAAgiaia~~l~~~g~-~~~~i~~~D~~ 234 (432)
T COG0281 202 IVINGAGAAGIAIADLLVAAGV-KEENIFVVDRK 234 (432)
T ss_pred EEEECCCHHHHHHHHHHHHHCC-CCCCEEEECCC
T ss_conf 9996775889999999998289-84458998167
No 494
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=79.22 E-value=3.6 Score=20.05 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=0.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 7999897689999999998089973999978
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEK 47 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK 47 (554)
++|+|||=|+-++|+.|++.| .+|.++.|
T Consensus 335 ~~vlGaGGaarAi~~~l~~~g--~~i~I~nR 363 (477)
T PRK09310 335 VAIVGAGGAAKAIATTLARQG--AELLIFNR 363 (477)
T ss_pred EEEECCCHHHHHHHHHHHHCC--CEEEEEEC
T ss_conf 244247507999999998679--97999979
No 495
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=78.97 E-value=4.4 Score=19.43 Aligned_cols=62 Identities=19% Similarity=0.248 Sum_probs=0.0
Q ss_pred CCHHHCCCCHHCCCCCEEEECCCHH-HHHHHHHHHHCCCCCEEEEEECCC-----CCCCCCCCCCEECHHHHHHHC
Q ss_conf 9601024200103647799989768-999999999808997399997867-----789864027403336788867
Q gi|254781024|r 1 MNSCDILHNKDVFEYDVVIIGAGPA-GLAAAIRCKQINPHLSVVILEKSA-----EVGAHILSGAIIDPIGIDSLL 70 (554)
Q Consensus 1 ~~~~~~~~~re~meyDVvIVGaGPA-G~saA~~La~~g~~l~VlvlEK~~-----~pG~~i~sG~vl~p~aL~eL~ 70 (554)
||.-++--.+ ++|.||+-. |.+.|.+|++.| .+|+++++.. ....+....++.++..+++++
T Consensus 1 m~~~~l~gK~------alITG~s~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~~~~~~Dv~~~~~v~~~~ 68 (253)
T PRK08220 1 MNSMDFSGKT------VWVTGAAQGIGYAVALAFVEAG--AKVIGFDQAFEQLNEQYPFATFVLDVADAAAVAQVC 68 (253)
T ss_pred CCCCCCCCCE------EEEECCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHCCCCEEEEEEECCCHHHHHHHH
T ss_conf 9988999998------9995885689999999999879--999999788778748997799997379999999999
No 496
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=78.54 E-value=0.5 Score=26.05 Aligned_cols=47 Identities=23% Similarity=0.524 Sum_probs=0.0
Q ss_pred CHHHCCCCCEEEEEEECCCC-EEEEEECCCCCCCCCCCCCCCCCCCEE
Q ss_conf 81321358600688965997-056651566670475730068888625
Q gi|254781024|r 494 GPSMRYCPAGVYEWHQNNDE-NNYIIHAQNCIHCKACVIKDPNQNIEW 540 (554)
Q Consensus 494 ~p~~~~cpa~vye~~~~~~~-~~~~i~~~nc~hcktc~ik~p~~~i~w 540 (554)
+.|...||.++.++..+... ....|+...|+.|+.|.-.+|...|.+
T Consensus 35 g~C~~~CP~~ai~~~~~~~~~~~~~~~~~~C~~C~~C~~~Cp~~a~~~ 82 (99)
T COG1145 35 GLCVKVCPTGAIELIEEGLLLPEVVIDPDLCVLCGACLKVCPVDALSI 82 (99)
T ss_pred CCHHHHCCHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHCCCCHHHH
T ss_conf 634545768887522134667515458020534578884499642246
No 497
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=78.49 E-value=4.4 Score=19.50 Aligned_cols=30 Identities=30% Similarity=0.517 Sum_probs=0.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 7999897689999999998089973999978
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEK 47 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK 47 (554)
|+|+|+|-|+.+.+..|+..|.. ++.++-|
T Consensus 129 vlIlGaGGaa~ai~~~l~~~g~~-~i~i~nr 158 (289)
T PRK12548 129 LTIIGAGGAATAIQVQCALDGAK-EITIFNI 158 (289)
T ss_pred EEEEECCHHHHHHHHHHHHCCCC-EEEEEEC
T ss_conf 79995216799999999976998-8999968
No 498
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=78.21 E-value=3.6 Score=20.10 Aligned_cols=31 Identities=29% Similarity=0.478 Sum_probs=0.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 799989768999999999808997399997867
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~ 49 (554)
|.|+|+|-=|+..|.+|++.|.+ |.++=|.+
T Consensus 3 I~IlGaGAvG~l~g~~L~~~g~~--V~~~~R~~ 33 (307)
T COG1893 3 ILILGAGAIGSLLGARLAKAGHD--VTLLVRSR 33 (307)
T ss_pred EEEECCCHHHHHHHHHHHHCCCC--EEEEECHH
T ss_conf 99987878999999999858995--79981089
No 499
>PRK05086 malate dehydrogenase; Provisional
Probab=78.05 E-value=3.9 Score=19.81 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=0.0
Q ss_pred EEEECC-CHHHHHHHHHHH-HCCCCCEEEEEE
Q ss_conf 799989-768999999999-808997399997
Q gi|254781024|r 17 VVIIGA-GPAGLAAAIRCK-QINPHLSVVILE 46 (554)
Q Consensus 17 VvIVGa-GPAG~saA~~La-~~g~~l~VlvlE 46 (554)
|.|||| |--|+++|+.|+ |....-.++|+|
T Consensus 3 V~IiGA~G~VG~s~A~~l~~~~~~~~el~L~D 34 (312)
T PRK05086 3 VAVLGAAGGIGQALALLLKTQLPAGSELSLYD 34 (312)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 99998998699999999982898777499975
No 500
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=77.96 E-value=4.4 Score=19.49 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=0.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 799989768999999999808997399997
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILE 46 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlE 46 (554)
|+|||||-=|++.|+.|.+.+..-.+.|+|
T Consensus 3 V~viGaG~VG~s~a~~l~~~~~~~el~LiD 32 (313)
T COG0039 3 VAVIGAGNVGSSLAFLLLLQGLGSELVLID 32 (313)
T ss_pred EEEECCCHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 999898747899999996255566599997
Done!