HHsearch alignment for GI: 254781024 and conserved domain: pfam00890
>pfam00890 FAD_binding_2 FAD binding domain. This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.
Probab=99.49 E-value=1.1e-12 Score=106.96 Aligned_cols=170 Identities=22% Similarity=0.304 Sum_probs=98.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC-CCCCEEC-------------HHH-HHHH-----------
Q ss_conf 7799989768999999999808997399997867789864-0274033-------------367-8886-----------
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI-LSGAIID-------------PIG-IDSL----------- 69 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i-~sG~vl~-------------p~a-L~eL----------- 69 (554)
T Consensus 1 DVvVIG~G~AGl~AAi~Aae~G--a~VillEk~~~~gG~s~~s~G~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 78 (401)
T pfam00890 1 DVVVIGSGLAGLAAALEAAEAG--LKVAVVEKGQPFGGATAWSSGGIDALGTPPQGAGIDSPDLHPTDTLKGLDELADHP 78 (401)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCHHHHHCCCHHHCCCHHHCCCCCCHHHHHHHHHHHCCCCCCHH
T ss_conf 9899988699999999999789--94899978999997688845231004884351579999999999999658878899
Q ss_pred ----C-------CCHHHHCCCCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCC-CCEEEEHHHHHHHHHHHHHHCCCE
Q ss_conf ----7-------8726414885432243669999779976773654356544678-826888889899999999874953
Q gi|254781024|r 70 ----L-------PRWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNK-EHYIVSLGQVCRWLKNKAEALGVE 137 (554)
Q Consensus 70 ----~-------Pd~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~-g~yiv~r~~fd~~L~~~Ae~~Gve 137 (554)
T Consensus 79 l~~~~~~~s~~~~dwl~~~G~~~~~~~~~~~~~-~~~~g~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~ 156 (401)
T pfam00890 79 YVEAFVEAAPEAVDWLEALGVPFSRSTEDGHID-LRPLGGLS-ATWRTPHDVADRRRGTLGTGHALLARLLEGALKRGID 156 (401)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCC-CCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 999999867999999998399777567787111-33566666-6502103545445567888999999999999976998
Q ss_pred ECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEE-EEEEECCCCCHHHHHH
Q ss_conf 30682243477627762014541243244346657875630267742-5786066443255421
Q gi|254781024|r 138 IYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSK-YMLVGEGACGSLTRQL 200 (554)
Q Consensus 138 i~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak-~vI~AdG~~s~lak~l 200 (554)
T Consensus 157 i~~~t~~~~Li~-d~g~V~Gv~~~~~~----------~g~~~~i~A~kaVIlAtGGf~~n~~~~ 209 (401)
T pfam00890 157 FQPRHPADDLIV-EDGRVTGVVVENRR----------NGREVRIRAIAGVLLATGGFGRNAELL 209 (401)
T ss_pred EEECCEEEEEEE-ECCEEEEEEEEECC----------CCEEEEEEEEEEEEECCCCHHHHHHHH
T ss_conf 993869615698-28858999999678----------980999995106799668813448876