HHsearch alignment for GI: 254781024 and conserved domain: pfam03486
>pfam03486 HI0933_like HI0933-like protein.
Probab=99.55 E-value=2.5e-13 Score=111.55 Aligned_cols=138 Identities=28% Similarity=0.446 Sum_probs=89.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC-CCCE---ECH-HHHHHHC---C---------------
Q ss_conf 477999897689999999998089973999978677898640-2740---333-6788867---8---------------
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL-SGAI---IDP-IGIDSLL---P--------------- 71 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~-sG~v---l~p-~aL~eL~---P--------------- 71 (554)
T Consensus 1 yDv~VIGgGaaGl~aAi~aa~~g--~~V~ilEk~~~~GkKll~tG~GRCN~TN~~~~~~~~~~~~~~~~fl~~~l~~F~~ 78 (405)
T pfam03486 1 YDVIVIGGGAAGLMAAISAAKRG--RRVLLIEKGKKLGRKILISGGGRCNVTNSVEPDNFLSRYPGNPHFLKSALSRFTP 78 (405)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCEEEECCCCCCEECCCCCHHHHHHHCCCCHHHHHHHHHHCCH
T ss_conf 97999996699999999998689--9599995899875015882689614078999799986257757999999984899
Q ss_pred ----CHHHHCCCCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEE
Q ss_conf ----7264148854322436699997799767736543565446788268888898999999998749533068224347
Q gi|254781024|r 72 ----RWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEI 147 (554)
Q Consensus 72 ----d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i 147 (554)
T Consensus 79 ~d~~~ff~~~Gl~~~~e----------~~Gr-vfP~-----s--------~~A~~Vl~~L~~~l~~~gV~i~~~~~V~~I 134 (405)
T pfam03486 79 WDFIAWFEELGVPLKEE----------DHGR-LFPV-----S--------DKASDIVDALLNELKELGVKIRTRTRVLSV 134 (405)
T ss_pred HHHHHHHHHCCCEEEEC----------CCCE-EECC-----C--------CCHHHHHHHHHHHHHHCCCEEEECCEEEEE
T ss_conf 99999999779905977----------8997-9789-----8--------986999999999999779789958887899
Q ss_pred EECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCH
Q ss_conf 762776201454124324434665787563026774257860664432
Q gi|254781024|r 148 YYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGS 195 (554)
Q Consensus 148 ~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~ 195 (554)
T Consensus 135 ~~~~~~~-~~v~~~----------------~~~~~a~~vIlAtGG~s~ 165 (405)
T pfam03486 135 EKDDDGR-FRVDTG----------------GEELEADSLVLATGGLSW 165 (405)
T ss_pred EECCCCE-EEEEEC----------------CCEEEECEEEEECCCCCC
T ss_conf 9759945-999948----------------958972789990488665