HHsearch alignment for GI: 254781024 and conserved domain: pfam03486

>pfam03486 HI0933_like HI0933-like protein.
Probab=99.55  E-value=2.5e-13  Score=111.55  Aligned_cols=138  Identities=28%  Similarity=0.446  Sum_probs=89.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC-CCCE---ECH-HHHHHHC---C---------------
Q ss_conf             477999897689999999998089973999978677898640-2740---333-6788867---8---------------
Q gi|254781024|r   15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL-SGAI---IDP-IGIDSLL---P---------------   71 (554)
Q Consensus        15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~-sG~v---l~p-~aL~eL~---P---------------   71 (554)
T Consensus         1 yDv~VIGgGaaGl~aAi~aa~~g--~~V~ilEk~~~~GkKll~tG~GRCN~TN~~~~~~~~~~~~~~~~fl~~~l~~F~~   78 (405)
T pfam03486         1 YDVIVIGGGAAGLMAAISAAKRG--RRVLLIEKGKKLGRKILISGGGRCNVTNSVEPDNFLSRYPGNPHFLKSALSRFTP   78 (405)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCEEEECCCCCCEECCCCCHHHHHHHCCCCHHHHHHHHHHCCH
T ss_conf             97999996699999999998689--9599995899875015882689614078999799986257757999999984899


Q ss_pred             ----CHHHHCCCCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEE
Q ss_conf             ----7264148854322436699997799767736543565446788268888898999999998749533068224347
Q gi|254781024|r   72 ----RWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEI  147 (554)
Q Consensus        72 ----d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i  147 (554)
T Consensus        79 ~d~~~ff~~~Gl~~~~e----------~~Gr-vfP~-----s--------~~A~~Vl~~L~~~l~~~gV~i~~~~~V~~I  134 (405)
T pfam03486        79 WDFIAWFEELGVPLKEE----------DHGR-LFPV-----S--------DKASDIVDALLNELKELGVKIRTRTRVLSV  134 (405)
T ss_pred             HHHHHHHHHCCCEEEEC----------CCCE-EECC-----C--------CCHHHHHHHHHHHHHHCCCEEEECCEEEEE
T ss_conf             99999999779905977----------8997-9789-----8--------986999999999999779789958887899


Q ss_pred             EECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCH
Q ss_conf             762776201454124324434665787563026774257860664432
Q gi|254781024|r  148 YYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGS  195 (554)
Q Consensus       148 ~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~  195 (554)
T Consensus       135 ~~~~~~~-~~v~~~----------------~~~~~a~~vIlAtGG~s~  165 (405)
T pfam03486       135 EKDDDGR-FRVDTG----------------GEELEADSLVLATGGLSW  165 (405)
T ss_pred             EECCCCE-EEEEEC----------------CCEEEECEEEEECCCCCC
T ss_conf             9759945-999948----------------958972789990488665