HHsearch alignment for GI: 254781024 and conserved domain: pfam05834
>pfam05834 Lycopene_cycl Lycopene cyclase protein. This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.
Probab=99.77 E-value=1.6e-15 Score=126.81 Aligned_cols=306 Identities=17% Similarity=0.119 Sum_probs=168.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC---CCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEE
Q ss_conf 779998976899999999980899739999786778---98640274033367888678726414885432243669999
Q gi|254781024|r 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEV---GAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWF 92 (554)
Q Consensus 16 DVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~p---G~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~ 92 (554)
T Consensus 1 DviIiG~G~AGLsLA~~L~~~~~~~~Vllid~~~~~~~~~d~tW~fW~~~~~~~~~~~~-----------~~W~--~~~v 67 (374)
T pfam05834 1 DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPPFPNNHTWSDEFEDLGPLAPCVE-----------HSWP--GYEV 67 (374)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEECCCCCCCCCHHHHHH-----------CEEC--CEEE
T ss_conf 98999952999999999974089981999978988888998385457178777577764-----------5879--6799
Q ss_pred ECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 77997677365435654467882688888989999999987495330682243477627762014541243244346657
Q gi|254781024|r 93 LNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQG 172 (554)
Q Consensus 93 l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~ 172 (554)
T Consensus 68 ~~~~~~~~l---------~~~~Y~~i~s~~f~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~--~~v~~~~---------- 125 (374)
T pfam05834 68 RFPDGRRKL---------IGRGYGRVSSDRLHEELLRRCAENGVIRL-NAKVASVDAEPVE--SLVVLED---------- 125 (374)
T ss_pred EECCCCEEE---------CCCCCEEEEHHHHHHHHHHHHHHCCCEEE-CCEEEEEECCCCC--EEEEECC----------
T ss_conf 928997476---------68870798889999999999865796999-1377897537870--5999269----------
Q ss_pred CCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEE
Q ss_conf 87563026774257860664432554211224899888898998898888751656678880899504347687664125
Q gi|254781024|r 173 KHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMNTSGGGF 252 (554)
Q Consensus 173 ~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~~~gggw 252 (554)
T Consensus 126 -----g~~~~a~~V~Dsr~~~~~~~~~----------~l~Q~F-~G~--~I~t~~~~fd~~~~~l-MDfr~~q~~~g~~F 186 (374)
T pfam05834 126 -----GRTIRARLVIDARGASPSGALT----------VGYQTF-YGV--EVEVDNPPHDPDVPVI-MDARVPQPAKGYRF 186 (374)
T ss_pred -----CCEEEEEEEEECCCCCCCCCCC----------CEEEEE-EEE--EEEECCCCCCCCEEEE-EEECCCCCCCCEEE
T ss_conf -----9587444999478766778888----------614899-999--9996899788872599-98326666676189
Q ss_pred EE--ECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 76--6479805999983266656688988999998608004565038826303513400542124874230887996123
Q gi|254781024|r 253 VY--HFDDNLVSIGFVLHLDYRNPWISAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKLSFPGGSLIGCA 330 (554)
Q Consensus 253 iy--~~~d~~~~iG~v~~ld~~~~~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~g~lLvGDA 330 (554)
T Consensus 187 ~YvLP~s~~~aLVE~T~-f-s~~~~l~~~~~~~~i~~yl-~~~gi~~~~i~~~E~GviPm~~~~~~-~~~~~~ii~iG~a 262 (374)
T pfam05834 187 LYVLPLSPTRLLIEDTC-Y-ADGPALPFDALKQRLMDYA-RALGWRILEVEREEQGVIPMTLGGDL-PATWQKVLRIGAA 262 (374)
T ss_pred EEEEECCCCEEEEEEEE-E-CCCCCCCHHHHHHHHHHHH-HHCCCCCCEEEEEEEEEECCCCCCCC-CCCCCCCCCEECC
T ss_conf 99975489859999875-3-3677899999999999999-97299852377548899888668886-5568776222324
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC--HHHH-HHHHHHHHHHH
Q ss_conf 23313664352268999999999999998745886530--3678-99864204667
Q gi|254781024|r 331 AGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDD--PIEI-EDSWRQTQIGK 383 (554)
Q Consensus 331 AG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~--l~~Y-e~~~~~s~~~~ 383 (554)
T Consensus 263 gG~~~psTGY----sf~~~~~~a~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~fl~ 314 (374)
T pfam05834 263 AGLVHPSTGY----SVPRALALAPAIAAILRLSSISLRAWITLWARERWRQRGFFR 314 (374)
T ss_pred CCCCCCCCCH----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 3788887036----299999989999987642784322321127099999999999