HHsearch alignment for GI: 254781024 and conserved domain: pfam08491
>pfam08491 SE Squalene epoxidase. This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway. Putative transmembrane regions are found to the protein's C-terminus.
Probab=98.17 E-value=1.6e-05 Score=57.28 Aligned_cols=154 Identities=16% Similarity=0.114 Sum_probs=84.2
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCEEE
Q ss_conf 42578606644325542112248998888989988988887516566788808995043476876641257664798059
Q gi|254781024|r 183 SKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMNTSGGGFVYHFDDNLVS 262 (554)
Q Consensus 183 Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~~~gggwiy~~~d~~~~ 262 (554)
T Consensus 2 ApLtvv~DG~~S~fRk~l~~~~----~~v~S-~FvGl~-l--~~~~lp~p~hGhViL~~------~~PvL~YqIs~~etR 67 (276)
T pfam08491 2 APLTIVCDGCFSKFRKSLSDNK----VEVGS-YFVGLI-L--KNADLPAPNHGHVILGK------PSPILLYQISSTETR 67 (276)
T ss_pred CCEEEEECCCCHHHHHHHCCCC----CCEEE-EEEEEE-E--CCCCCCCCCCEEEEECC------CCCEEEEECCCCCEE
T ss_conf 9869981685058788734899----96301-689999-7--17889998804899669------986899972898368
Q ss_pred EEEEECCCCC-CCCC---CHHHHHHHHH-------HCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 9998326665-6688---9889999986-------080045650388263035134005421248742308879961232
Q gi|254781024|r 263 IGFVLHLDYR-NPWI---SAYEELQRFK-------THPDIRIIFTEGERLEYGARVISEGGWQSVPKLSFPGGSLIGCAA 331 (554)
Q Consensus 263 iG~v~~ld~~-~~~~---~~~~~lq~fk-------~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~g~lLvGDAA 331 (554)
T Consensus 68 ~L--vdv~~~~lPs~~ng~~~~yl~~~v~P~lP~~lr~~f~~Al~~g~iRsMPn~~lp-----~~-~~~~~G~illGDA~ 139 (276)
T pfam08491 68 IL--CDYPGPKLPSIANGELKEYLKTSVAPQIPKELRPSFLAALDEGKIRSMPNSFLP-----AS-KNRKKGLILLGDAL 139 (276)
T ss_pred EE--EECCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC-----CC-CCCCCCEEEEEHHH
T ss_conf 99--953788899866416899999714667988899999999965992447502188-----87-67998789971110
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 331366435226899999999999999
Q gi|254781024|r 332 GFVNLLRIKGSHNAIISGMLAAEKIVE 358 (554)
Q Consensus 332 G~vnP~~g~GI~~Am~SG~lAAEai~e 358 (554)
T Consensus 140 NmRHPLTGgGMTVal~Dvv~L~~lL~~ 166 (276)
T pfam08491 140 NMRHPLTGGGMTVALNDIVLLRKLLGP 166 (276)
T ss_pred CCCCCCCCCCEEEEHHHHHHHHHHCCC
T ss_conf 588985576667642089999986377