RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781024|ref|YP_003065437.1| electron transfer
flavoprotein-ubiquinone oxidoreductase [Candidatus Liberibacter
asiaticus str. psy62]
(554 letters)
>gnl|CDD|37626 KOG2415, KOG2415, KOG2415, Electron transfer flavoprotein
ubiquinone oxidoreductase [Energy production and
conversion].
Length = 621
Score = 575 bits (1483), Expect = e-164
Identities = 253/557 (45%), Positives = 360/557 (64%), Gaps = 19/557 (3%)
Query: 10 KDVFEYDVVIIGAGPAGLAAAIRCKQI----NPHLSVVILEKSAEVGAHILSGAIIDPIG 65
++ E DVVI+GAGPAGL+AAIR KQ+ N L V ++EK+AEVG H LSGA+I+P
Sbjct: 72 RESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGA 131
Query: 66 IDSLLPRWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCR 125
+D LLP W+ED G P +T V D + FL + I +P +P MDN +Y+VSLGQ+ R
Sbjct: 132 LDELLPDWKED-GAPLNTPVTSDKFKFLTGKGRISVP---VPSPMDNHGNYVVSLGQLVR 187
Query: 126 WLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKY 185
WL KAE LGVEIY GF A+E+ Y + G GI T + G + DG + M +K
Sbjct: 188 WLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKV 247
Query: 186 MLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDM 245
+ EG GSL++Q+I+++ L + +PQ +GLG+KE+W+I P+ H G H++GWPLD
Sbjct: 248 TIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGLKEVWEIDPENHNPGEVAHTLGWPLDN 307
Query: 246 NTSGGGFVYHFDDNLVSIGFVLHLDYRNPWISAYEELQRFKTHPDIRIIFTEGERLEYGA 305
+T GG F+YHF+D LV++G V+ LDY+NP++S Y+E Q+ K HP I + G+R+ YGA
Sbjct: 308 DTYGGSFLYHFNDPLVAVGLVVGLDYKNPYLSPYKEFQKMKHHPSISKVLEGGKRIAYGA 367
Query: 306 RVISEGGWQSVPKLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKK 365
R ++EGG+QS+PKL FPGG+LIGC+AGF+N+ +IKG+H A+ SGMLAAE I E + +
Sbjct: 368 RALNEGGFQSIPKLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQ 427
Query: 366 HD----DPIEIEDSWRQTQIGKDLWIIRNIKPLLSRF-GVFIGLSLGLMDIWIQKILGFS 420
DP E++ + + + K+L+ +RNI+P G++ G+ + + +L
Sbjct: 428 SKMAGLDPTTYEENLKDSYVWKELYSVRNIRPSFHGKLGLYGGMIYSGIFSY---VLKGK 484
Query: 421 FLGTLKHHKMDSCSLEAASQHKKIDYPKPDGKLTFDIMSSLFLAKVKYVKEQPMHLLIKD 480
TLKH K D +L+ AS++K I YPKPDG L+FD+++S+ + + ++QP HL ++D
Sbjct: 485 VPWTLKHGKNDHEALKPASKYKPIVYPKPDGVLSFDLLTSVSRSGTNHDEDQPAHLTLRD 544
Query: 481 KDLQKKSELRIYSGPSMRYCPAGVYEWHQNNDENN---YIIHAQNCIHCKACVIKDPNQN 537
D+ K +Y GP R+CPAGVYE+ + I+AQNCIHCK C IKDP QN
Sbjct: 545 DDIPVKVNFPVYKGPESRFCPAGVYEYVPDEAGPVGKRLQINAQNCIHCKTCDIKDPKQN 604
Query: 538 IEWNPPQGGDGPHYVDM 554
I W P+GG GP Y M
Sbjct: 605 INWVVPEGGGGPKYTLM 621
>gnl|CDD|30989 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 254 bits (649), Expect = 5e-68
Identities = 134/454 (29%), Positives = 205/454 (45%), Gaps = 63/454 (13%)
Query: 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPR 72
EYDVVI+GAGPAG +AA R + L V++LEK +E GA G + P ++ L+P
Sbjct: 2 MEYDVVIVGAGPAGSSAARRLAKAG--LDVLVLEKGSEPGAKPCCGGGLSPRALEELIPD 59
Query: 73 WREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAE 132
+ E+ V +F + +I++P E YIV + +WL +AE
Sbjct: 60 FDEE----IERKVTGARIYFPGEKVAIEVPV---------GEGYIVDRAKFDKWLAERAE 106
Query: 133 ALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGA 192
G E+Y G T + G +G+ G+ + +K ++ +G
Sbjct: 107 EAGAELYPGTRVTGVIREDDGVVVGVRAGD----------------DEVRAKVVIDADGV 150
Query: 193 CGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPLDMNTSGGGF 252
+L R+L + R+P+ + +G+KE+ ++ G + PLD+ G G+
Sbjct: 151 NSALARKLG-----LKDRKPEDYAIGVKEVIEV----PDDGDVEEFLYGPLDVGPGGYGW 201
Query: 253 VYHFDDNLVSIGFVLHLDYRNPWISAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGG 312
++ D ++G + LD + E L+RFK HP IR + G+ LEY A I EGG
Sbjct: 202 IFPLGDGHANVGIGVLLDDPSLSPF-LELLERFKEHPAIRKLLLGGKILEYAAGGIPEGG 260
Query: 313 WQSVPKLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEI 372
S P L G L+G AAGFVN L +G AI SG LAAE I E L G+ + E
Sbjct: 261 PASRP-LVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGGE--EALAEY 317
Query: 373 EDSWRQTQIGKDLWIIRNIKPLLSRFGVFIGLSLGLMDIWIQKILGFSFLGTLKHHKMDS 432
E R++ +DL +R +K LL + I+ + LG +K +
Sbjct: 318 ERLLRKSLAREDLKSLRLLKLLLRLL-------DRTLPALIKLLADKDLLGLIKKYL--- 367
Query: 433 CSLEAASQHKKIDYPKPDGKLT-FDIMSSLFLAK 465
K I YP G L FD++ S+ +
Sbjct: 368 --------RKLILYPLLKGVLARFDLLKSVKRSL 393
>gnl|CDD|147396 pfam05187, ETF_QO, Electron transfer flavoprotein-ubiquinone
oxidoreductase. Electron-transfer
flavoprotein-ubiquinone oxidoreductase (ETF-QO) in the
inner mitochondrial membrane accepts electrons from
electron-transfer flavoprotein which is located in the
mitochondrial matrix and reduces ubiquinone in the
mitochondrial membrane. The two redox centres in the
protein, FAD and a [4Fe4S] cluster, are present in a
64-kDa monomer.
Length = 110
Score = 133 bits (338), Expect = 9e-32
Identities = 55/113 (48%), Positives = 75/113 (66%), Gaps = 3/113 (2%)
Query: 399 GVFIGLSLGLMDIWIQKILGFSFLGTLKHHKMDSCSLEAASQHKKIDYPKPDGKLTFDIM 458
G+++GL+ +D WI + G S TLKHHK D +L+ AS+ K IDYPKPDGKLTFD +
Sbjct: 1 GLWLGLAYAGLDQWILR--GKSPW-TLKHHKPDHAALKPASECKPIDYPKPDGKLTFDRL 57
Query: 459 SSLFLAKVKYVKEQPMHLLIKDKDLQKKSELRIYSGPSMRYCPAGVYEWHQNN 511
SS+FL+ + ++QP HL +KD + L Y+GP RYCPAGVYE ++
Sbjct: 58 SSVFLSNTNHEEDQPCHLKLKDPSVPIAVNLPKYAGPEQRYCPAGVYEIVEDE 110
>gnl|CDD|30999 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related
FAD-dependent oxidoreductases [Coenzyme metabolism /
Energy production and conversion].
Length = 387
Score = 57.4 bits (138), Expect = 9e-09
Identities = 32/139 (23%), Positives = 49/139 (35%), Gaps = 16/139 (11%)
Query: 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSL----- 69
DV I+GAGPAGLA A+ + L V +LE++ G + P + +L
Sbjct: 3 LDVAIVGAGPAGLALALALARAG--LDVTLLERAPRELLERGRGIALSPNALRALERLGL 60
Query: 70 LPRWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKN 129
R P H + +R + F + Y+V + L
Sbjct: 61 WDRLEALGVPPLHV-----MVVDDGGRRLL---IFDAAELGRGALGYVVPRSDLLNALLE 112
Query: 130 KAEALG-VEIYCGFTATEI 147
A AL V + G +
Sbjct: 113 AARALPNVTLRFGAEVEAV 131
>gnl|CDD|32561 COG2440, FixX, Ferredoxin-like protein [Energy production and
conversion].
Length = 99
Score = 53.4 bits (128), Expect = 2e-07
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 454 TFDIMSSLFLAKVKYVKEQPMHLLIKDKDLQKKSELRIYSGPSMRYCPAGVYEWHQNNDE 513
+I L + + ++ P H+++KD D ++ E + P ++ CPAG Y+ D+
Sbjct: 6 MMNIEEKLSVNRYNVDEDHP-HIIVKDPDDCQECEDK----PLIKACPAGCYKL---IDD 57
Query: 514 NNYIIHAQNCIHCKAC-VIKDPNQNIEWNPPQGGDGPHY 551
+ C+ C C V+ + I+W P+GG G Y
Sbjct: 58 GKLRFDYEGCLECGTCRVLCPHSGLIQWRYPRGGFGITY 96
>gnl|CDD|31441 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 51.4 bits (123), Expect = 6e-07
Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG 52
EYDVV+IGAGPAG AAIR Q+ L V ++EK +G
Sbjct: 3 KEYDVVVIGAGPAGYVAAIRAAQL--GLKVALVEKGERLG 40
>gnl|CDD|36549 KOG1335, KOG1335, KOG1335, Dihydrolipoamide dehydrogenase [Energy
production and conversion].
Length = 506
Score = 50.3 bits (120), Expect = 1e-06
Identities = 38/156 (24%), Positives = 60/156 (38%), Gaps = 26/156 (16%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILS-GAIIDPIGIDSLLPR 72
+YDVV+IG GP G AAI+ Q+ L +EK +G L+ G I +LL
Sbjct: 39 DYDVVVIGGGPGGYVAAIKAAQLG--LKTACVEKRGTLGGTCLNVGCIPS----KALL-- 90
Query: 73 WREDKGHPFHTVVKRDLYWFLNAQRSIQIP--HFCLPDFMDNKEHYIVSLGQVCRWLKNK 130
+ H +H D A R I + L M K++ + L ++N
Sbjct: 91 ---NNSHLYHEAQHEDF-----ASRGIDVSSVSLDLQAMMKAKDNAVKQLTGG---IENL 139
Query: 131 AEALGVEIYCGFTA----TEIYYGKKGEALGILTGE 162
+ V GF + ++ K I+ +
Sbjct: 140 FKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAK 175
>gnl|CDD|146239 pfam03486, HI0933_like, HI0933-like protein.
Length = 405
Score = 50.3 bits (121), Expect = 2e-06
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL-SG 58
YDV++IG G AGL AAI + V+++EK ++G IL SG
Sbjct: 1 YDVIVIGGGAAGLMAAISAAK--RGRRVLLIEKGKKLGRKILISG 43
>gnl|CDD|144475 pfam00890, FAD_binding_2, FAD binding domain. This family
includes members that bind FAD. This family includes
the flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 50.0 bits (120), Expect = 2e-06
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI 55
DVV+IG+G AGLAAA+ + L V ++EK G
Sbjct: 1 DVVVIGSGLAGLAAALEAAE--AGLKVAVVEKGQPFGGAT 38
>gnl|CDD|31425 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism].
Length = 444
Score = 49.5 bits (118), Expect = 2e-06
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILS----GAIIDPIGIDSLLPR 72
+ IIG G AGL+AA R ++ P + V + E VG + + G + + G L R
Sbjct: 3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFE-RGPHHFLAR 61
Query: 73 WRE 75
E
Sbjct: 62 KEE 64
>gnl|CDD|31253 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and
conversion].
Length = 562
Score = 48.4 bits (115), Expect = 4e-06
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 12 VFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAH 54
+ E+DVV+IG G AGL AAI + L V +L K+ H
Sbjct: 4 IHEFDVVVIGGGGAGLRAAIEAAEAG--LKVALLSKAPPKRGH 44
>gnl|CDD|30838 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 48.0 bits (114), Expect = 8e-06
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG 52
YDV+IIG GPAGL AAI + L VV++ + E G
Sbjct: 3 IYDVIIIGGGPAGLTAAIYAARAG--LKVVLILEGGEPG 39
>gnl|CDD|32255 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
[Inorganic ion transport and metabolism].
Length = 443
Score = 46.6 bits (110), Expect = 2e-05
Identities = 20/38 (52%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG 52
DV IIGAG +GLAAA KQ VI EK +VG
Sbjct: 9 TDVAIIGAGQSGLAAAYALKQAGVP-DFVIFEKRDDVG 45
>gnl|CDD|36613 KOG1399, KOG1399, KOG1399, Flavin-containing monooxygenase
[Secondary metabolites biosynthesis, transport and
catabolism].
Length = 448
Score = 46.5 bits (110), Expect = 2e-05
Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 23/139 (16%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWRE 75
DV +IGAGPAGLAAA + VV+ E++ ++G ++ E
Sbjct: 8 DVAVIGAGPAGLAAARELLR--EGHEVVVFERTDDIGGLW----------------KYTE 49
Query: 76 DKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALG 135
+ +V K L ++ + F + Y S +V +L++ A+
Sbjct: 50 NVEVVHSSVYKS-----LRTNLPKEMMGYSDFPFPERDPRYFPSHREVLEYLRDYAKHFD 104
Query: 136 VEIYCGFTATEIYYGKKGE 154
+ F + +
Sbjct: 105 LLKMINFNTEVVRVDSIDK 123
>gnl|CDD|31426 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 46.6 bits (110), Expect = 2e-05
Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG 52
YDVV+IGAG GLAAA + L V +LEK+ VG
Sbjct: 3 MYDVVVIGAGLNGLAAAALLARAG--LKVTVLEKNDRVG 39
>gnl|CDD|144747 pfam01266, DAO, FAD dependent oxidoreductase. This family includes
various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 309
Score = 45.4 bits (108), Expect = 4e-05
Identities = 41/176 (23%), Positives = 65/176 (36%), Gaps = 47/176 (26%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAH--------ILSGAIIDP---- 63
DVV+IG G GL+ A + LSV +LE+ ++ + + G +
Sbjct: 1 DVVVIGGGIVGLSTAYELAR--RGLSVTLLER-GDLASGASGRNAGLLHPGLRKERAPLL 57
Query: 64 --IGIDS--LLPRWREDKGHPFHT------VVKRD------LYWFLNAQRSIQIPHFCL- 106
+ ++S L E+ G V+ RD L A R++ +P L
Sbjct: 58 ARLALESRDLWRELIEELGIDCDFRRTGVLVLARDEAELDALRRLAAALRALGLPVELLD 117
Query: 107 PDFMDNKEHYI---------------VSLGQVCRWLKNKAEALGVEIYCGFTATEI 147
+ + E + V ++ R L AEALGVEI G T +
Sbjct: 118 AEELRELEPGLSPGIRGGLFYPDGGHVDPARLLRALARAAEALGVEILEGTEVTGL 173
>gnl|CDD|30924 COG0579, COG0579, Predicted dehydrogenase [General function
prediction only].
Length = 429
Score = 44.9 bits (106), Expect = 6e-05
Identities = 19/41 (46%), Positives = 22/41 (53%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAH 54
+YDVVIIG G G A A + P LSV +LEK V
Sbjct: 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQE 43
>gnl|CDD|32264 COG2081, COG2081, Predicted flavoproteins [General function
prediction only].
Length = 408
Score = 43.2 bits (102), Expect = 2e-04
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL 56
+DV+IIG GPAGL AAI + V++++K ++G IL
Sbjct: 4 FDVIIIGGGPAGLMAAISAAK--AGRRVLLIDKGPKLGRKIL 43
>gnl|CDD|38171 KOG2960, KOG2960, KOG2960, Protein involved in thiamine
biosynthesis and DNA damage tolerance [General function
prediction only].
Length = 328
Score = 41.2 bits (96), Expect = 8e-04
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG 52
E DVVI+GAG AGL+AA + P L V I+E S G
Sbjct: 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPG 114
>gnl|CDD|35252 KOG0029, KOG0029, KOG0029, Amine oxidase [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 501
Score = 41.1 bits (96), Expect = 9e-04
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 21/70 (30%)
Query: 15 YDVVIIGAGPAGLAAAIRCKQI-NPHLSVVILEKS-----------------AEVGAHIL 56
V++IGAG AGL+AA +Q+ + V++LE ++GA +L
Sbjct: 16 KKVIVIGAGLAGLSAA---RQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVL 72
Query: 57 SGAIIDPIGI 66
+G +P+ +
Sbjct: 73 TGVYNNPLAL 82
>gnl|CDD|31822 COG1635, THI4, Flavoprotein involved in thiazole biosynthesis
[Coenzyme metabolism].
Length = 262
Score = 40.6 bits (95), Expect = 0.001
Identities = 44/215 (20%), Positives = 77/215 (35%), Gaps = 39/215 (18%)
Query: 10 KDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSL 69
D E DV+I+GAGP+GL AA + L V I E+ G I G + L
Sbjct: 26 LDYLESDVIIVGAGPSGLTAAYYLAKAG--LKVAIFERKLSFGGGIWGGGM--------L 75
Query: 70 LPRWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKN 129
+ VV+ + L I + D +Y+ + L
Sbjct: 76 FNK----------IVVREEADEIL---DEFGIR---YEEEEDG--YYVADSAEFASKLAA 117
Query: 130 KAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKH-YIAPMLLLSKYMLV 188
+A G +I+ G + ++ G++ N+ Q ++ P+ + +K ++
Sbjct: 118 RALDAGAKIFNGVSVEDVIVRDDPRVAGVVV-----NWTPVQMAGLHVDPLTIRAKAVVD 172
Query: 189 GEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELW 223
G + L +R + P G K +W
Sbjct: 173 ATGHDAEVVSFLAKRIPELGIEVP-----GEKSMW 202
>gnl|CDD|30795 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 39.1 bits (90), Expect = 0.003
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKS 48
+VI+G G AGL+AA +++ + ++ +
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGRE 32
Score = 36.1 bits (82), Expect = 0.027
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPI 64
DVV++GAGP GL AA + V ++E + +G +L + + +
Sbjct: 138 DVVVVGAGPIGLEAAEAAAKRG--KKVTLIEAADRLGGQLLDPEVAEEL 184
>gnl|CDD|31009 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 38.7 bits (89), Expect = 0.004
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKS--AEVGAHILSGAIIDPIGIDSLLP 71
+ DVVIIG G GL+AA + V +LE A +G I+ P
Sbjct: 4 KMDVVIIGGGIVGLSAAYYLAER--GADVTVLEAGEAGGGAAGRNAGGILAPWASPGGEL 61
Query: 72 RWR 74
R
Sbjct: 62 EVR 64
>gnl|CDD|37876 KOG2665, KOG2665, KOG2665, Predicted FAD-dependent oxidoreductase
[Function unknown].
Length = 453
Score = 38.4 bits (89), Expect = 0.005
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAH 54
YD+V++G G GLA+A +P L V +LEK + H
Sbjct: 48 RYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVH 88
>gnl|CDD|145231 pfam01946, Thi4, Thi4 family. This family includes a putative
thiamine biosynthetic enzyme.
Length = 229
Score = 37.4 bits (87), Expect = 0.010
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 11 DVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSG 58
D E DVVI+GAGP+GL AA + L V I+E+S G G
Sbjct: 14 DYAESDVVIVGAGPSGLTAAYYLAKKG--LKVAIIERSLSPGGGAWGG 59
>gnl|CDD|30379 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].
Length = 518
Score = 36.8 bits (85), Expect = 0.014
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 9 NKDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49
N D DV+IIG+G AGL AA+ P V +L K
Sbjct: 2 NTDFEHPDVLIIGSGLAGLTAALSLA---PSFRVTVLTKGP 39
>gnl|CDD|30839 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and
related oxidoreductases [Amino acid transport and
metabolism / General function prediction only].
Length = 457
Score = 36.1 bits (83), Expect = 0.024
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWR- 74
V +IGAGPAGLAAA + V + E+ A G +L G I + + R
Sbjct: 125 KVAVIGAGPAGLAAADDLSRAG--HDVTVFERVALDGGLLLYG--IPDFKLPKDILDRRL 180
Query: 75 ---EDKGHPFHTVVKRD 88
E G F V+
Sbjct: 181 ELLERSGVEFKLNVRVG 197
>gnl|CDD|35904 KOG0685, KOG0685, KOG0685, Flavin-containing amine oxidase
[Coenzyme transport and metabolism].
Length = 498
Score = 36.1 bits (83), Expect = 0.027
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 17 VVIIGAGPAGLAAAIR-CKQINPHLSVVILEKSAEVGAHILS 57
+VIIGAG AGLAAA R + + ILE S +G I +
Sbjct: 24 IVIIGAGIAGLAAATRLLENGFIDVL--ILEASDRIGGRIHT 63
>gnl|CDD|31342 COG1148, HdrA, Heterodisulfide reductase, subunit A and related
polyferredoxins [Energy production and conversion].
Length = 622
Score = 36.1 bits (83), Expect = 0.027
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPI---GIDSLLPR 72
V++IG G AG+ AA+ + V ++EK +G + P I L P+
Sbjct: 126 SVLVIGGGVAGITAALELADMG--FKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPK 183
Query: 73 WREDKGHP 80
E HP
Sbjct: 184 MVEVSNHP 191
>gnl|CDD|36452 KOG1238, KOG1238, KOG1238, Glucose dehydrogenase/choline
dehydrogenase/mandelonitrile lyase (GMC oxidoreductase
family) [General function prediction only].
Length = 623
Score = 35.7 bits (82), Expect = 0.033
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILE 46
YD +++G G AG A R + NP+ SV++LE
Sbjct: 56 SSYDYIVVGGGTAGCVLAARLSE-NPNWSVLLLE 88
>gnl|CDD|32458 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 35.9 bits (82), Expect = 0.034
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRW 73
EYD VI+G+G AG A R + LSV++L E G I P L+
Sbjct: 7 EYDYVIVGSGSAGSVLAARLS--DAGLSVLVL----EAGGPDRRPLIQMPAAYAFLMNGP 60
Query: 74 REDKG 78
R D G
Sbjct: 61 RYDWG 65
>gnl|CDD|31341 COG1146, COG1146, Ferredoxin [Energy production and conversion].
Length = 68
Score = 35.5 bits (81), Expect = 0.041
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 500 CPAGVYEWHQNNDENNYIIHAQNCIHCKACVIKDPNQNIEWNPPQGGDG 548
CPAGV++ ++ + + CI C C + P I+ + + G
Sbjct: 20 CPAGVFDLGEDEGGKPVVARPEECIDCGLCELACPVGAIKVDILRPGKQ 68
>gnl|CDD|33187 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase
[General function prediction only].
Length = 331
Score = 35.3 bits (81), Expect = 0.042
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILS 57
+ I+GAG AGLAAA ++ V + EK VG + +
Sbjct: 3 SIAIVGAGIAGLAAAYALREAG--REVTVFEKGRGVGGRLAT 42
>gnl|CDD|32889 COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase
[Amino acid transport and metabolism].
Length = 421
Score = 34.9 bits (80), Expect = 0.060
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA--------EVGAHILSGAIIDPI- 64
+DV IIG G AGL + +Q ++V +SA ++ + G + I
Sbjct: 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQSALHFSSGSLDLLGRLPDGQAVTDIH 61
Query: 65 -GIDSLLPRWREDKGHPFHTV 84
G+D+L ++ HP+ V
Sbjct: 62 DGLDAL---RQQAPAHPYSLV 79
>gnl|CDD|144912 pfam01494, FAD_binding_3, FAD binding domain. This domain is
involved in FAD binding in a number of enzymes.
Length = 349
Score = 34.6 bits (80), Expect = 0.064
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 14 EYDVVIIGAGPAGLAAAI 31
E DV+I+G GPAGL A+
Sbjct: 1 ETDVLIVGGGPAGLMLAL 18
>gnl|CDD|31424 COG1231, COG1231, Monoamine oxidase [Amino acid transport and
metabolism].
Length = 450
Score = 34.6 bits (79), Expect = 0.073
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSG 58
DV+I+GAG AGL+AA K+ V ILE VG L+
Sbjct: 9 DVIIVGAGLAGLSAAYELKKAG--YQVQILEARDRVGGRSLTA 49
>gnl|CDD|110172 pfam01150, GDA1_CD39, GDA1/CD39 (nucleoside phosphatase) family.
Length = 424
Score = 34.7 bits (80), Expect = 0.076
Identities = 37/156 (23%), Positives = 58/156 (37%), Gaps = 36/156 (23%)
Query: 252 FVYHF-DDNLVSIGFVLHLDYR---NPWISAYEELQRFKTHPDIRIIFTEGERLEYGARV 307
VY + D++L + V ++ P +S++ T P+ + LE+ V
Sbjct: 24 HVYKWKDEDLDLLQIVPLIEEFKKLEPGLSSFA------TKPEEAAKYLT-PLLEFAEEV 76
Query: 308 ISEGGWQSVPKLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHD 367
I + P +G AG + LL A+EKI+ L NG K
Sbjct: 77 IPDSQLSETP-------VFLGATAG-MRLLP-----------EDASEKILRALRNGLKSL 117
Query: 368 DPIEIEDSWRQ----TQIGKDLWIIRNIKPLLSRFG 399
++D + + G WI N LL RFG
Sbjct: 118 STFPVDDQGVRIIDGAEEGLYGWITVNY--LLGRFG 151
>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like.
This group is related to formaldehyde dehydrogenase
(FDH), which is a member of the zinc-dependent/medium
chain alcohol dehydrogenase family. This family uses
NAD(H) as a cofactor in the interconversion of alcohols
and aldehydes, or ketones. Another member is identified
as a dihydroxyacetone reductase. Like the zinc-dependent
alcohol dehydrogenases (ADH) of the medium chain alcohol
dehydrogenase/reductase family (MDR), tetrameric FDHs
have a catalytic zinc that resides between the catalytic
and NAD(H)binding domains and a structural zinc in a
lobe of the catalytic domain. Unlike ADH, where
NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly
bound redox cofactor (similar to nicotinamide proteins).
The medium chain alcohol dehydrogenase family (MDR) has
a NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The N-terminal region typically has an
all-beta catalytic domain. These proteins typically form
dimers (typically higher plants, mammals) or tetramers
(yeast, bacteria), and have 2 tightly bound zinc atoms
per subunit.
Length = 345
Score = 34.1 bits (79), Expect = 0.090
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 17 VVIIGAGPAGLAAAIRCKQINPHLSVVI------LEKSAEVGAH 54
V I+GAGP GLAA + + +P +++ LE + ++GA
Sbjct: 170 VAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGAT 213
>gnl|CDD|36490 KOG1276, KOG1276, KOG1276, Protoporphyrinogen oxidase [Coenzyme
transport and metabolism].
Length = 491
Score = 34.2 bits (78), Expect = 0.100
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILS 57
V ++G G +GL AA ++ P +++ + E S VG I S
Sbjct: 13 TVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54
>gnl|CDD|35620 KOG0399, KOG0399, KOG0399, Glutamate synthase [Amino acid transport
and metabolism].
Length = 2142
Score = 34.2 bits (78), Expect = 0.10
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSG 58
V IIG+GPAGLAAA + + V + E+S VG ++ G
Sbjct: 1788 VAIIGSGPAGLAAADQLNKAGHT--VTVYERSDRVGGLLMYG 1827
>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase. Benzyl
alcohol dehydrogenase is similar to liver alcohol
dehydrogenase, but has some amino acid substitutions
near the active site, which may determine the enzyme's
specificity of oxidizing aromatic substrates. Also
known as aryl-alcohol dehydrogenases, they catalyze the
conversion of an aromatic alcohol + NAD+ to an aromatic
aldehyde + NADH + H+. NAD(P)(H)-dependent
oxidoreductases are the major enzymes in the
interconversion of alcohols and aldehydes, or ketones.
Alcohol dehydrogenase in the liver converts ethanol and
NAD+ to acetaldehyde and NADH, while in yeast and some
other microorganisms ADH catalyzes the conversion
acetaldehyde to ethanol in alcoholic fermentation. ADH
is a member of the medium chain alcohol dehydrogenase
family (MDR), which has a NAD(P)(H)-binding domain in a
Rossmann fold of a beta-alpha form. The NAD(H)-binding
region is comprised of 2 structurally similar halves,
each of which contacts a mononucleotide. A GxGxxG motif
after the first mononucleotide contact half allows the
close contact of the coenzyme with the ADH backbone.
The N-terminal catalytic domain has a distant homology
to GroES. These proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and have 2 tightly bound zinc atoms per
subunit, a catalytic zinc at the active site and a
structural zinc in a lobe of the catalytic domain.
NAD(H) binding occurs in the cleft between the catalytic
and coenzyme-binding domains at the active site, and
coenzyme binding induces a conformational closing of
this cleft. Coenzyme binding typically precedes and
contributes to substrate binding. In human ADH
catalysis, the zinc ion helps coordinate the alcohol,
followed by deprotonation of a histidine, the ribose of
NAD, a serine, then the alcohol, which allows the
transfer of a hydride to NAD+, creating NADH and a
zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 365
Score = 34.0 bits (79), Expect = 0.12
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 17/60 (28%)
Query: 17 VVIIGAGPAGLAA-----AIRCKQINPHLSVVI------LEKSAEVGA-HILSGAIIDPI 64
+ + GAG GLAA C I + + LE + E+GA H+++ D +
Sbjct: 190 IAVFGAGAVGLAAVMAAKIAGCTTI-----IAVDIVDSRLELAKELGATHVINPKEEDLV 244
>gnl|CDD|144651 pfam01134, GIDA, Glucose inhibited division protein A.
Length = 391
Score = 33.7 bits (78), Expect = 0.14
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 16 DVVIIGAGPAGLAAAIRCKQ 35
DV++IG G AG AA+ +
Sbjct: 1 DVIVIGGGHAGCEAALAAAR 20
>gnl|CDD|33432 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 520
Score = 33.7 bits (77), Expect = 0.14
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 15 YDVVIIGAGPAGLAAAI 31
YDV+++G GPAG AAAI
Sbjct: 212 YDVLVVGGGPAGAAAAI 228
>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 341
Score = 33.4 bits (77), Expect = 0.18
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 13/66 (19%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE-------VGAHILSGAIIDPIGIDS 68
++IG GP GLA K +V + S E +GA I+ +DP DS
Sbjct: 164 VALVIGCGPIGLAVIAALKARGVG-PIVASDFSPERRALALAMGADIV----VDP-AADS 217
Query: 69 LLPRWR 74
W
Sbjct: 218 PFAAWA 223
>gnl|CDD|33375 COG3573, COG3573, Predicted oxidoreductase [General function
prediction only].
Length = 552
Score = 33.4 bits (76), Expect = 0.18
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 11 DVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50
D DV+++GAG AGL AA + + V+IL++ E
Sbjct: 2 DGLTADVIVVGAGLAGLVAA--AELADAGKRVLILDQEGE 39
>gnl|CDD|37011 KOG1800, KOG1800, KOG1800, Ferredoxin/adrenodoxin reductase
[Nucleotide transport and metabolism].
Length = 468
Score = 33.1 bits (75), Expect = 0.22
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIID 62
V I+G+GPAG A + +P+ V I EK + G D
Sbjct: 23 VCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPD 68
>gnl|CDD|39455 KOG4254, KOG4254, KOG4254, Phytoene desaturase [Coenzyme
transport and metabolism].
Length = 561
Score = 32.7 bits (74), Expect = 0.25
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAII 61
EYD V+IG G GL AA + SV +LE+ +G ++ I+
Sbjct: 14 EYDAVVIGGGHNGLTAAAYLARYG--QSVAVLERRHVIGGAAVTEEIV 59
>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the
zinc-dependent alcohol dehydrogenases (ADH). This group
contains the hypothetical TM0436 alcohol dehydrogenase
from Thermotoga maritima, proteins annotated as
5-exo-alcohol dehydrogenase, and other members of the
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
MDR, which contains the zinc-dependent alcohol
dehydrogenase (ADH-Zn) and related proteins, is a
diverse group of proteins related to the first
identified member, class I mammalian ADH. MDRs display
a broad range of activities and are distinguished from
the smaller short chain dehydrogenases (~ 250 amino
acids vs. the ~ 350 amino acids of the MDR). The MDR
proteins have 2 domains: a C-terminal NAD(P)
binding-Rossmann fold domain of a beta-alpha form and an
N-terminal catalytic domain with distant homology to
GroES. The MDR group contains a host of activities,
including the founding alcohol dehydrogenase (ADH),
quinone reductase, sorbitol dehydrogenase, formaldehyde
dehydrogenase, butanediol DH, ketose reductase, cinnamyl
reductase, and numerous others. The zinc-dependent
alcohol dehydrogenases (ADHs) catalyze the
NAD(P)(H)-dependent interconversion of alcohols to
aldehydes or ketones. Active site zinc has a catalytic
role, while structural zinc aids in stability.
Length = 361
Score = 32.6 bits (75), Expect = 0.31
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 17 VVIIGAGPAGLAAAIRCKQINPHLSVVI------LEKSAEVGAH 54
VV+ GAGP GL A K +VI LE + E GA
Sbjct: 181 VVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGAD 224
>gnl|CDD|113586 pfam04820, Trp_halogenase, Tryptophan halogenase. Tryptophan
halogenase catalyses the chlorination of tryptophan to
form 7-chlorotryptophan. This is the first step in the
biosynthesis of pyrrolnitrin, an antibiotic with
broad-spectrum anti-fungal activity. Tryptophan
halogenase is NADH-dependent.
Length = 457
Score = 32.3 bits (74), Expect = 0.37
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 16 DVVIIGAGPAG-LAAAIRCKQINPHLSVVILEKSAEVG 52
+VI+G G AG +AAA + + L V ++E S E+G
Sbjct: 1 KIVIVGGGTAGWMAAAALARALKGGLDVTLVE-SEEIG 37
>gnl|CDD|37615 KOG2404, KOG2404, KOG2404, Fumarate reductase, flavoprotein
subunit [Energy production and conversion].
Length = 477
Score = 32.3 bits (73), Expect = 0.40
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG 52
VV+IG G AGL+A+ IN V++LEK+ +G
Sbjct: 12 VVVIGGGLAGLSASNDI--INKGGIVILLEKAGSIG 45
>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
The medium chain reductase/dehydrogenases
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH) , quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. ADH-like proteins
typically form dimers (typically higher plants, mammals)
or tetramers (yeast, bacteria), and generally have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. The active site zinc is
coordinated by a histidine, two cysteines, and a water
molecule. The second zinc seems to play a structural
role, affects subunit interactions, and is typically
coordinated by 4 cysteines. Other MDR members have only
a catalytic zinc, and some contain no coordinated zinc.
Length = 271
Score = 31.9 bits (73), Expect = 0.49
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 17 VVIIGAGPAGLAAAIRCKQINPHLSVVI-----LEKSAEVGAH 54
V+++GAG GL AA K + V LE + E+GA
Sbjct: 138 VLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGAD 180
>gnl|CDD|39059 KOG3855, KOG3855, KOG3855, Monooxygenase involved in coenzyme Q
(ubiquinone) biosynthesis [Coenzyme transport and
metabolism, Energy production and conversion].
Length = 481
Score = 31.5 bits (71), Expect = 0.59
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 8/45 (17%)
Query: 9 NKDVFEYDVVIIGAGPAG--LAAAIRCKQINPHL---SVVILEKS 48
+ D +YDVVI+G GP G LAAA+ NP V++L+
Sbjct: 31 STDTAKYDVVIVGGGPVGLALAAAL---GSNPPFQDKKVLLLDAG 72
>gnl|CDD|143965 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine
dehydrogenase.
Length = 237
Score = 31.0 bits (71), Expect = 0.79
Identities = 22/87 (25%), Positives = 30/87 (34%), Gaps = 21/87 (24%)
Query: 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL-----SGAIIDPIGID-SLL 70
V + G G G AA EK E+GA ++ SG I DP GID L
Sbjct: 35 VAVQGFGNVGSYAA---------------EKLLELGAKVVAVSDSSGYIYDPNGIDIEEL 79
Query: 71 PRWREDKGHPFHTVVKRDLYWFLNAQR 97
+E+ G + +
Sbjct: 80 LELKEEGGGRVVEYAGSGAEYISGEEL 106
>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde
dehydrogenase related proteins, child 2.
Glutathione-dependent formaldehyde dehydrogenases (FDHs)
are members of the zinc-dependent/medium chain alcohol
dehydrogenase family. Formaldehyde dehydrogenase (FDH)
is a member of the zinc-dependent/medium chain alcohol
dehydrogenase family. FDH converts formaldehyde and NAD
to formate and NADH. The initial step in this process
the spontaneous formation of a
S-(hydroxymethyl)glutathione adduct from formaldehyde
and glutathione, followed by FDH-mediated oxidation (and
detoxification) of the adduct to S-formylglutathione.
These tetrameric FDHs have a catalytic zinc that resides
between the catalytic and NAD(H)binding domains and a
structural zinc in a lobe of the catalytic domain. The
medium chain alcohol dehydrogenase family (MDR) has a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The N-terminal region typically has an
all-beta catalytic domain. These proteins typically form
dimers (typically higher plants, mammals) or tetramers
(yeast, bacteria), and have 2 tightly bound zinc atoms
per subunit.
Length = 344
Score = 31.1 bits (71), Expect = 0.82
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 17 VVIIGAGPAGLAAAIRCKQINPHLSVVI------LEKSAEVGAHILSGAIIDPI 64
V +IG GP GL A + + + + LE++A +GA ++ +P+
Sbjct: 171 VAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAEPINFEDAEPV 224
>gnl|CDD|34178 COG4529, COG4529, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 474
Score = 31.1 bits (70), Expect = 0.93
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 15 YDVVIIGAGPAGLAAAIR-CKQINPHLSVVILEKSAEVGAHI 55
+ V IIG G +G+ A K P + I E G I
Sbjct: 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGI 43
>gnl|CDD|36550 KOG1336, KOG1336, KOG1336, Monodehydroascorbate/ferredoxin
reductase [General function prediction only].
Length = 478
Score = 30.6 bits (69), Expect = 1.0
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 17 VVIIGAGPAGLAAAIRCKQINPH--LSVVILEKSAEVGAHILSGAII-DPIGIDSLLPRW 73
VI+G GP G A +Q+ +++V E LS ++ G+ P +
Sbjct: 77 FVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEF 136
Query: 74 REDKGHPFHT---VVKRDL 89
++KG VVK DL
Sbjct: 137 YKEKGIELILGTSVVKADL 155
>gnl|CDD|31340 COG1145, NapF, Ferredoxin [Energy production and conversion].
Length = 99
Score = 30.7 bits (67), Expect = 1.1
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 491 IYSGPSMRYCPAGVYEWHQNNDENNYI-IHAQNCIHCKACVIKDPNQNIEW 540
I G ++ CP G E + + I C+ C AC+ P +
Sbjct: 32 IGCGLCVKVCPTGAIELIEEGLLLPEVVIDPDLCVLCGACLKVCPVDALSI 82
>gnl|CDD|39914 KOG4716, KOG4716, KOG4716, Thioredoxin reductase
[Posttranslational modification, protein turnover,
chaperones].
Length = 503
Score = 30.3 bits (68), Expect = 1.4
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG 52
++YD+++IG G GLA A + ++ + K G
Sbjct: 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQG 57
>gnl|CDD|31263 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent
dehydrogenases [Amino acid transport and metabolism /
General function prediction only].
Length = 350
Score = 29.6 bits (66), Expect = 2.0
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVI------LEKSAEVGAHILSGAIIDPIGIDSL 69
VV++GAGP GL A K + + +V+ LE + E G + +++P D+
Sbjct: 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG---ADVVVNPSEDDAG 227
Query: 70 LPRWREDKGHPFHTVV 85
G V+
Sbjct: 228 AEILELTGGRGADVVI 243
>gnl|CDD|32579 COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases
[General function prediction only].
Length = 486
Score = 29.5 bits (66), Expect = 2.3
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 14 EYDVVIIGAGPAGLAAAIRC---KQINPHLSVVILEKSAEVGAHILSG 58
DVVI+GAGPAGL AA + P L + +++ ++ +
Sbjct: 18 ALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQRLCPK 65
>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases. Formaldehyde
dehydrogenase (FDH) is a member of the
zinc-dependent/medium chain alcohol dehydrogenase
family. Formaldehyde dehydrogenase (aka ADH3) may be
the ancestral form of alcohol dehydrogenase, which
evolved to detoxify formaldehyde. This CD contains
glutathione dependant FDH, glutathione independent FDH,
and related alcohol dehydrogenases. FDH converts
formaldehyde and NAD(P) to formate and NAD(P)H. The
initial step in this process the spontaneous formation
of a S-(hydroxymethyl)glutathione adduct from
formaldehyde and glutathione, followed by FDH-mediated
oxidation (and detoxification) of the adduct to
S-formylglutathione. Unlike typical FDH, Pseudomonas
putida aldehyde-dismutating FDH (PFDH) is
glutathione-independent. The medium chain alcohol
dehydrogenase family (MDR) have a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit.
Length = 347
Score = 29.6 bits (67), Expect = 2.3
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 17 VVIIGAGPAGLAAAIRCKQINPHLSVVI 44
V +IGAGP GL A + + + +
Sbjct: 171 VAVIGAGPVGLCAVAGARLLGAARIIAV 198
>gnl|CDD|35522 KOG0301, KOG0301, KOG0301, Phospholipase A2-activating protein
(contains WD40 repeats) [Lipid transport and
metabolism].
Length = 745
Score = 29.6 bits (66), Expect = 2.3
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 404 LSLGLMD--IWIQKILGFSFLGTLKHHKMDSCSLEA 437
L +G MD I + K+ L TLK HK + CSL
Sbjct: 74 LVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSI 109
>gnl|CDD|31444 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy
production and conversion].
Length = 405
Score = 29.4 bits (66), Expect = 2.5
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEK 47
+VI+G G GL+AA R + P + + ++++
Sbjct: 6 IVILGGGFGGLSAAKRLARKLPDVEITLVDR 36
Score = 27.9 bits (62), Expect = 8.1
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 11/50 (22%)
Query: 16 DVVIIGAGPAG--LAAAIR---------CKQINPHLSVVILEKSAEVGAH 54
+VI+G GP G LA + + L V+++E +
Sbjct: 157 TIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM 206
>gnl|CDD|30629 COG0281, SfcA, Malic enzyme [Energy production and conversion].
Length = 432
Score = 29.4 bits (66), Expect = 2.9
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 1 MNSCDILHNKDVFEYDVVIIGAGPAGLAAA 30
+N+ + K + + +VI GAG AG+A A
Sbjct: 187 LNALKLT-GKKLKDQKIVINGAGAAGIAIA 215
>gnl|CDD|30794 COG0445, GidA, NAD/FAD-utilizing enzyme apparently involved in
cell division [Cell division and chromosome
partitioning].
Length = 621
Score = 29.4 bits (66), Expect = 3.0
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 14 EYDVVIIGAGPAGLAAA 30
EYDV++IG G AG+ AA
Sbjct: 4 EYDVIVIGGGHAGVEAA 20
>gnl|CDD|31338 COG1143, NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone
oxidoreductase 23 kD subunit (chain I) [Energy
production and conversion].
Length = 172
Score = 29.2 bits (65), Expect = 3.1
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 7/38 (18%)
Query: 500 CPAG--VYEWHQNNDENN-----YIIHAQNCIHCKACV 530
CPA E + + I+ CI C CV
Sbjct: 67 CPANAITMETAERKVDGRKKPKRPDINLGRCIFCGLCV 104
>gnl|CDD|133453 cd05311, NAD_bind_2_malic_enz, NAD(P) binding domain of malic
enzyme (ME), subgroup 2. Malic enzyme (ME), a member
of the amino acid dehydrogenase (DH)-like domain
family, catalyzes the oxidative decarboxylation of
L-malate to pyruvate in the presence of cations
(typically Mg++ or Mn++) with the concomitant
reduction of cofactor NAD+ or NADP+. ME has been found
in all organisms, and plays important roles in diverse
metabolic pathways such as photosynthesis and
lipogenesis. This enzyme generally forms homotetramers.
The conversion of malate to pyruvate by ME typically
involves oxidation of malate to produce oxaloacetate,
followed by decarboxylation of oxaloacetate to produce
pyruvate and CO2. This subfamily consists primarily of
archaeal and bacterial ME. Amino acid DH-like
NAD(P)-binding domains are members of the Rossmann fold
superfamily and include glutamate, leucine, and
phenylalanine DHs, methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+
as a cofactor. The NAD(P)-binding Rossmann fold
superfamily includes a wide variety of protein families
including NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 226
Score = 29.2 bits (66), Expect = 3.3
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 1 MNSCDILHNKDVFEYDVVIIGAGPAGLAAA 30
+N+ ++ K + E +VI GAG AG+A A
Sbjct: 13 LNALKLV-GKKIEEVKIVINGAGAAGIAIA 41
>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase.
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent
medium chain alcohol dehydrogenase, catalyzes the
NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and
meso-butanediol to acetoin. BDH functions as a
homodimer. NAD(P)(H)-dependent oxidoreductases are the
major enzymes in the interconversion of alcohols and
aldehydes, or ketones. The medium chain alcohol
dehydrogenase family (MDR) have a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit.
Sorbitol and aldose reductase are NAD(+) binding
proteins of the polyol pathway, which interconverts
glucose and fructose. Sorbitol dehydrogenase is
tetrameric and has a single catalytic zinc per subunit.
Length = 351
Score = 29.0 bits (66), Expect = 3.5
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 20/63 (31%)
Query: 17 VVIIGAGPAGLAAAI-----RCKQINPHLSVVI------LEKSAEVGAHILSGAIIDPIG 65
+++GAGP GL + +I +V E + E+GA I ++DP
Sbjct: 176 ALVLGAGPIGLLTILALKAAGASKI-----IVSEPSEARRELAEELGATI----VLDPTE 226
Query: 66 IDS 68
+D
Sbjct: 227 VDV 229
>gnl|CDD|30923 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 532
Score = 29.1 bits (65), Expect = 3.6
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEK 47
E+DV++IG G G A L V ++EK
Sbjct: 12 EFDVIVIGGGITGAGIARDA--AGRGLKVALVEK 43
>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase. Sorbitol and aldose
reductase are NAD(+) binding proteins of the polyol
pathway, which interconverts glucose and fructose.
Sorbitol dehydrogenase is tetrameric and has a single
catalytic zinc per subunit. Aldose reductase catalyzes
the NADP(H)-dependent conversion of glucose to sorbital,
and SDH uses NAD(H) in the conversion of sorbitol to
fructose. NAD(P)(H)-dependent oxidoreductases are the
major enzymes in the interconversion of alcohols and
aldehydes, or ketones. The medium chain alcohol
dehydrogenase family (MDR) have a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit.
Length = 343
Score = 29.0 bits (66), Expect = 3.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 17 VVIIGAGPAGLAAAIRCK 34
V++ GAGP GL A K
Sbjct: 166 VLVFGAGPIGLLTAAVAK 183
>gnl|CDD|37825 KOG2614, KOG2614, KOG2614, Kynurenine 3-monooxygenase and related
flavoprotein monooxygenases [Energy production and
conversion, General function prediction only].
Length = 420
Score = 28.8 bits (64), Expect = 4.1
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKS 48
VVI+G G GLA A+ + + VV+LE
Sbjct: 4 KVVIVGGGIVGLATALALHRKG--IDVVVLESR 34
>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family. This
group contains members identified as related to
zinc-dependent alcohol dehydrogenase and other members
of the MDR family. The medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group includes
various activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has a
catalytic role, while structural zinc aids in stability.
ADH-like proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and generally have 2 tightly bound zinc atoms per
subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 337
Score = 28.7 bits (65), Expect = 4.3
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 17 VVIIGAGPAGLAAAI 31
V+++GAGP GL
Sbjct: 163 VLVVGAGPIGLGVIQ 177
>gnl|CDD|33289 COG3486, IucD, Lysine/ornithine N-monooxygenase [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 436
Score = 28.7 bits (64), Expect = 4.4
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 15 YDVVIIGAGPAGLAAAIRCKQINPH--LSVVILEKSAEVGAH 54
D++ IG GP L+ A + H L + LE+ + H
Sbjct: 6 LDLIGIGIGPFNLSLAA---LLEEHSGLKSLFLERKPDFSWH 44
>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase. Putative
L-iditol 2-dehydrogenase based on annotation of some
members in this subgroup. L-iditol 2-dehydrogenase
catalyzes the NAD+-dependent conversion of L-iditol to
L-sorbose in fructose and mannose metabolism. This
enzyme is related to sorbitol dehydrogenase, alcohol
dehydrogenase, and other medium chain
dehydrogenase/reductases. The zinc-dependent alcohol
dehydrogenase (ADH-Zn)-like family of proteins is a
diverse group of proteins related to the first
identified member, class I mammalian ADH. This group is
also called the medium chain dehydrogenases/reductase
family (MDR) to highlight its broad range of activities
and to distinguish from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal GroES-like catalytic
domain. The MDR group contains a host of activities,
including the founding alcohol dehydrogenase (ADH),
quinone reductase, sorbitol dehydrogenase, formaldehyde
dehydrogenase, butanediol DH, ketose reductase, cinnamyl
reductase, and numerous others. The zinc-dependent
alcohol dehydrogenases (ADHs) catalyze the
NAD(P)(H)-dependent interconversion of alcohols to
aldehydes or ketones. Active site zinc has a catalytic
role, while structural zinc aids in stability. ADH-like
proteins typically form dimers (typically higher
plants, mammals) or tetramers (yeast, bacteria), and
generally have 2 tightly bound zinc atoms per subunit.
The active site zinc is coordinated by a histidine, two
cysteines, and a water molecule. The second zinc seems
to play a structural role, affects subunit interactions,
and is typically coordinated by 4 cysteines.
Length = 343
Score = 28.7 bits (65), Expect = 4.6
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 18/62 (29%)
Query: 16 DVVIIGAGPAGL----------AAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIG 65
V++IGAGP GL A + +N LE + ++GA ID
Sbjct: 168 TVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFR----LEFAKKLGADY----TIDAAE 219
Query: 66 ID 67
D
Sbjct: 220 ED 221
>gnl|CDD|144743 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal
domain. This family now also contains the lysine
2-oxoglutarate reductases.
Length = 150
Score = 28.7 bits (65), Expect = 4.8
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEV 51
VV+IG G GL AA K + V IL+ E
Sbjct: 23 VVVIGGGVVGLGAAATAKGLG--APVTILDVRPER 55
>gnl|CDD|33157 COG3349, COG3349, Uncharacterized conserved protein [Function
unknown].
Length = 485
Score = 28.4 bits (63), Expect = 5.2
Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIG 65
V I GAG AGLAAA V + E +G + D G
Sbjct: 3 VAIAGAGLAGLAAAYELADAG--YDVTLYEARDRLGG--KVASWRDSDG 47
>gnl|CDD|37522 KOG2311, KOG2311, KOG2311, NAD/FAD-utilizing protein possibly
involved in translation [Translation, ribosomal
structure and biogenesis].
Length = 679
Score = 28.4 bits (63), Expect = 5.4
Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Query: 15 YDVVIIGAGPAGL---AAAIRC 33
YDVV+IG G AG AAA R
Sbjct: 29 YDVVVIGGGHAGCEAAAAAARL 50
>gnl|CDD|37614 KOG2403, KOG2403, KOG2403, Succinate dehydrogenase, flavoprotein
subunit [Energy production and conversion].
Length = 642
Score = 28.0 bits (62), Expect = 6.0
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 13/106 (12%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVI-LEK--SAEVGAHILSGAIIDPIGIDSLL 70
YD V++GAG AGL AA ++ +V+ L S V A A + +G D+
Sbjct: 55 TYDAVVVGAGGAGLRAARGLAELGEKTAVITKLFPTRSHTVAAQGGINAALGNMGNDN-- 112
Query: 71 PRWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHY 116
WR H + TV D +L Q +I P + E+Y
Sbjct: 113 --WRW---HMYDTVKGSD---WLGDQDAIHYMCREAPKAVIELENY 150
>gnl|CDD|35626 KOG0405, KOG0405, KOG0405, Pyridine nucleotide-disulphide
oxidoreductase [Secondary metabolites biosynthesis,
transport and catabolism].
Length = 478
Score = 28.4 bits (63), Expect = 6.2
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 11 DVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG 52
DV ++D ++IG G G+A+A R V + E +G
Sbjct: 17 DVKDFDYLVIGGGSGGVASARRAASHG--AKVALCELPFGLG 56
>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family. This
group has the characteristic catalytic and structural
zinc-binding sites of the zinc-dependent alcohol
dehydrogenases of the MDR family. The medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability.
Length = 350
Score = 28.1 bits (63), Expect = 6.6
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 10/51 (19%)
Query: 13 FEYDVVIIGAGPAGLA--AAIRCKQINPHLSVVI------LEKSAEVGAHI 55
F+ VV+ GAGP GL A R K NP +V+ L + + GA +
Sbjct: 174 FDDVVVLAGAGPLGLGMIGAARLK--NPKKLIVLDLKDERLALARKFGADV 222
>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating
formaldehyde dehydrogenase (PFDH). Formaldehyde
dehydrogenase (FDH) is a member of the
zinc-dependent/medium chain alcohol dehydrogenase
family. Unlike typical FDH, Pseudomonas putida
aldehyde-dismutating FDH (PFDH) is
glutathione-independent. PFDH converts 2 molecules of
aldehydes to corresponding carboxylic acid and alcohol.
MDH family uses NAD(H) as a cofactor in the
interconversion of alcohols and aldehydes, or ketones.
Like the zinc-dependent alcohol dehydrogenases (ADH) of
the medium chain alcohol dehydrogenase/reductase family
(MDR), these tetrameric FDHs have a catalytic zinc that
resides between the catalytic and NAD(H)binding domains
and a structural zinc in a lobe of the catalytic domain.
Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in
FDH is a tightly bound redox cofactor (similar to
nicotinamide proteins). The medium chain alcohol
dehydrogenase family (MDR) has a NAD(P)(H)-binding
domain in a Rossmann fold of an beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit.
Length = 375
Score = 27.9 bits (63), Expect = 7.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 17 VVIIGAGPAGLAAA 30
V + GAGP GL AA
Sbjct: 180 VAVFGAGPVGLMAA 193
>gnl|CDD|29750 cd01147, HemV-2, Metal binding protein HemV-2. These proteins are
predicted to function as initial receptors in ABC
transport of metal ions. They belong to the TroA
superfamily of helical backbone metal receptor proteins
that share a distinct fold and ligand binding mechanism.
A typical TroA protein is comprised of two globular
subdomains connected by a single helix and can bind the
metal ion in the cleft between these domains. In
addition, these proteins sometimes have a low complexity
region containing a metal-binding histidine-rich motif
(repetitive HDH sequence)..
Length = 262
Score = 27.6 bits (61), Expect = 9.2
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 3/65 (4%)
Query: 481 KDLQKKSELRIYSGPSMRYCPAGVYEWHQNNDENNYIIHAQNCIHCKA---CVIKDPNQN 537
KD+ + + +Y G AG+ + E + N P Q
Sbjct: 149 KDIPDEEKPTVYFGRIGTKGAAGLESGLAGSIEVFELAGGINVADGLGGGGLKEVSPEQI 208
Query: 538 IEWNP 542
+ WNP
Sbjct: 209 LLWNP 213
>gnl|CDD|31339 COG1144, COG1144, Pyruvate:ferredoxin oxidoreductase and related
2-oxoacid:ferredoxin oxidoreductases, delta subunit
[Energy production and conversion].
Length = 91
Score = 27.7 bits (61), Expect = 9.3
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 517 IIHAQNCIHCKACVIKDPNQNIEWNPPQGGDGPHYVD 553
++ CI+CK C + P I G +D
Sbjct: 31 VVDEDKCINCKLCWLYCPEPAILEEE---GGYKVRID 64
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.141 0.446
Gapped
Lambda K H
0.267 0.0823 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 7,314,504
Number of extensions: 409761
Number of successful extensions: 1089
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1077
Number of HSP's successfully gapped: 96
Length of query: 554
Length of database: 6,263,737
Length adjustment: 99
Effective length of query: 455
Effective length of database: 4,124,446
Effective search space: 1876622930
Effective search space used: 1876622930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.7 bits)