HHsearch alignment of GI: 254781025 and MMDB domain: 1f7d_A_
>1f7d_A (A:) POL polyprotein; eight stranded beta-barrel, viral protein, hydrolase; 1.40A {Feline immunodeficiency virus}
Probab=100.00 E-value=1.5e-38 Score=239.04 Aligned_cols=131 Identities=34% Similarity=0.562 Sum_probs=121.0
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCCEEECCCCEEEEECCCHHHCCCCEEEEEEECCCCEEEEEEECCCCCEEECCC
Q ss_conf 54797037435788640878910377873893799739996586022587614678752663133222023550366568
Q gi|254781025|r 13 HAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYGVACLNSPGTIDSD 92 (154)
Q Consensus 13 ~~~~~~lP~~~t~~~AG~Dl~a~~~~~e~~~i~pg~~~li~Tgi~i~ip~g~~~~i~~RSsl~~K~gl~~~n~~GvID~~ 92 (154)
.++++.+|+| ++||||||+++ ++++|+|+++++|+|++++.+|+++++++++|||++ ++|+.+ ++|+||+|
T Consensus 3 ~~~~~~~P~~--~~~ag~Di~~~----~~i~i~p~~~~~v~t~~~~~~p~~~~~~i~~RSsl~-~~gi~v--~~g~iD~g 73 (136)
T 1f7d_A 3 IEGDGILDKR--SEDAGYDLLAA----KEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIG-SKGLDV--LGGVIDEG 73 (136)
T ss_dssp EESSSBCCCC--TTCSSEEEECS----SCEEECTTCEEEEECCCEECCCTTEEEEEECCHHHH-TTTEEE--ECCEECTT
T ss_pred ECCCCCCCCC--CCCCCEEEECC----CCEEECCCCEEEEECCEEEECCCCEEEEEECCCCCC-CCCCEE--ECCEECCC
T ss_conf 7488327786--88536728248----888999999899976969988999799996357545-379456--77879989
Q ss_pred CCCCEEEEEEECCCCEEEEECCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 78876999998079449995595035899975043406998713577542688887354679
Q gi|254781025|r 93 YRGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSLISAMPMGKNERNEKGFGSTGLY 154 (154)
Q Consensus 93 YrGei~v~l~N~~~~~~~i~~G~RIaQlv~~~~~~~~~~~v~~~~l~~t~RG~~GFGSTG~~ 154 (154)
|+|++++.++|.++.++.|++|+||||++|.++..+.+++++ ++.+|+||++||||||++
T Consensus 74 y~G~i~i~l~N~~~~~~~i~~g~riaQlv~~~~~~~~~~~~~--~l~~t~Rg~~gfGstgv~ 133 (136)
T 1f7d_A 74 YRGEIGVIMINVSRKSITLMERQKIAQLIILPCKHEVLEQGK--VVMDSERGDNGYGSTGVF 133 (136)
T ss_dssp CCSCCEEEEEECSSSCEEECTTCEEEEEEEEECCCCCCCCSC--CCC---------------
T ss_pred CCCCEEEEEECCCCCCEEECCCCEEEEEEEEECCCCEEEECC--CCCCCCCCCCCCCCCCCC
T ss_conf 868679999808999989899998999999852411279826--567665768979724315