HHsearch results for GI: 254781025 and protein with PDBid: 1f7d_A

>1f7d_A POL polyprotein; eight stranded beta-barrel, viral protein, hydrolase; 1.40A {Feline immunodeficiency virus} SCOP: b.85.4.1 PDB: 1f7k_A* 1f7n_A* 1f7o_A 1f7p_A* 1f7q_A* 1f7r_A* 1dut_A
Probab=100.00  E-value=2.8e-45  Score=276.33  Aligned_cols=130  Identities=34%  Similarity=0.588  Sum_probs=120.6

Q ss_pred             CCCCCCCCCCCCCCCEEEEEEECCCCCCEEECCCCEEEEECCCHHHCCCCEEEEEEECCCCEEEEEEECCCCCEEECCCC
Q ss_conf             47970374357886408789103778738937997399965860225876146787526631332220235503665687
Q gi|254781025|r   14 AHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYGVACLNSPGTIDSDY   93 (154)
Q Consensus        14 ~~~~~lP~~~t~~~AG~Dl~a~~~~~e~~~i~pg~~~li~Tgi~i~ip~g~~~~i~~RSsl~~K~gl~~~n~~GvID~~Y   93 (154)
                      ++++.||+|+  .||||||+++    ++++|+|+++++|+||+++++|++|+++|+||||++ |+||.+.|  |+||+||
T Consensus         4 ~~~ailPkr~--~dAGyDl~~~----e~~~i~P~~~~~i~Tg~~i~~p~~~~~~i~~RSsl~-~~gl~v~~--GvID~gY   74 (136)
T 1f7d_A            4 EGDGILDKRS--EDAGYDLLAA----KEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIG-SKGLDVLG--GVIDEGY   74 (136)
T ss_dssp             ESSSBCCCCT--TCSSEEEECS----SCEEECTTCEEEEECCCEECCCTTEEEEEECCHHHH-TTTEEEEC--CEECTTC
T ss_pred             CCCCCCCCCC--CCCCEEEECC----CCEEECCCCEEEEECCEEEECCCCCEEEEECCCCHH-CEEEEEEE--EEECCCC
T ss_conf             3884488989--8616769659----888999998999978979985977599998267231-20478655--5788877


Q ss_pred             CCCEEEEEEECCCCEEEEECCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             8876999998079449995595035899975043406998713577542688887354679
Q gi|254781025|r   94 RGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSLISAMPMGKNERNEKGFGSTGLY  154 (154)
Q Consensus        94 rGei~v~l~N~~~~~~~i~~G~RIaQlv~~~~~~~~~~~v~~~~l~~t~RG~~GFGSTG~~  154 (154)
                      ||||++.++|++++++.|++|+||||+||+|+.++++++++  ++++|+||++||||||+|
T Consensus        75 ~Gei~v~l~N~~~~~~~i~~G~riaQlv~~~~~~~~~~~~~--~l~~t~RG~~GfGSTG~~  133 (136)
T 1f7d_A           75 RGEIGVIMINVSRKSITLMERQKIAQLIILPCKHEVLEQGK--VVMDSERGDNGYGSTGVF  133 (136)
T ss_dssp             CSCCEEEEEECSSSCEEECTTCEEEEEEEEECCCCCCCCSC--CCC---------------
T ss_pred             CCEEEEEEEECCCCCEEECCCCEEEEEEEECCCEEEEEECC--CCCCCCCCCCCCCCCCCC
T ss_conf             76689999999999888379998999999515715799927--377574679988636514