HHsearch results for GI: 254781025 and protein with PDBid: 1f7d_A
>1f7d_A POL polyprotein; eight stranded beta-barrel, viral protein, hydrolase; 1.40A {Feline immunodeficiency virus} SCOP: b.85.4.1 PDB: 1f7k_A* 1f7n_A* 1f7o_A 1f7p_A* 1f7q_A* 1f7r_A* 1dut_A
Probab=100.00 E-value=2.8e-45 Score=276.33 Aligned_cols=130 Identities=34% Similarity=0.588 Sum_probs=120.6
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCCEEECCCCEEEEECCCHHHCCCCEEEEEEECCCCEEEEEEECCCCCEEECCCC
Q ss_conf 47970374357886408789103778738937997399965860225876146787526631332220235503665687
Q gi|254781025|r 14 AHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYGVACLNSPGTIDSDY 93 (154)
Q Consensus 14 ~~~~~lP~~~t~~~AG~Dl~a~~~~~e~~~i~pg~~~li~Tgi~i~ip~g~~~~i~~RSsl~~K~gl~~~n~~GvID~~Y 93 (154)
++++.||+|+ .||||||+++ ++++|+|+++++|+||+++++|++|+++|+||||++ |+||.+.| |+||+||
T Consensus 4 ~~~ailPkr~--~dAGyDl~~~----e~~~i~P~~~~~i~Tg~~i~~p~~~~~~i~~RSsl~-~~gl~v~~--GvID~gY 74 (136)
T 1f7d_A 4 EGDGILDKRS--EDAGYDLLAA----KEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIG-SKGLDVLG--GVIDEGY 74 (136)
T ss_dssp ESSSBCCCCT--TCSSEEEECS----SCEEECTTCEEEEECCCEECCCTTEEEEEECCHHHH-TTTEEEEC--CEECTTC
T ss_pred CCCCCCCCCC--CCCCEEEECC----CCEEECCCCEEEEECCEEEECCCCCEEEEECCCCHH-CEEEEEEE--EEECCCC
T ss_conf 3884488989--8616769659----888999998999978979985977599998267231-20478655--5788877
Q ss_pred CCCEEEEEEECCCCEEEEECCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 8876999998079449995595035899975043406998713577542688887354679
Q gi|254781025|r 94 RGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSLISAMPMGKNERNEKGFGSTGLY 154 (154)
Q Consensus 94 rGei~v~l~N~~~~~~~i~~G~RIaQlv~~~~~~~~~~~v~~~~l~~t~RG~~GFGSTG~~ 154 (154)
||||++.++|++++++.|++|+||||+||+|+.++++++++ ++++|+||++||||||+|
T Consensus 75 ~Gei~v~l~N~~~~~~~i~~G~riaQlv~~~~~~~~~~~~~--~l~~t~RG~~GfGSTG~~ 133 (136)
T 1f7d_A 75 RGEIGVIMINVSRKSITLMERQKIAQLIILPCKHEVLEQGK--VVMDSERGDNGYGSTGVF 133 (136)
T ss_dssp CSCCEEEEEECSSSCEEECTTCEEEEEEEEECCCCCCCCSC--CCC---------------
T ss_pred CCEEEEEEEECCCCCEEECCCCEEEEEEEECCCEEEEEECC--CCCCCCCCCCCCCCCCCC
T ss_conf 76689999999999888379998999999515715799927--377574679988636514