RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781025|ref|YP_003065438.1| deoxyuridine 5 27-triphosphate
nucleotidohydrolase [Candidatus Liberibacter asiaticus str. psy62]
(154 letters)
>gnl|CDD|179077 PRK00601, dut, deoxyuridine 5'-triphosphate nucleotidohydrolase;
Provisional.
Length = 150
Score = 203 bits (519), Expect = 2e-53
Identities = 77/152 (50%), Positives = 92/152 (60%), Gaps = 4/152 (2%)
Query: 1 MQSIDIPFLQLPHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAI 60
M+ ID+ L PLP Y T GS+G+DL A L DEPV L PG R+L+P G I I
Sbjct: 1 MKKIDVKILDPRLGKEFPLPAYATEGSAGLDLRACL--DEPVTLAPGERALVPTGLAIHI 58
Query: 61 PPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQL 120
P GYE Q+ RSGLA +G+ N PGTIDSDYRGE+K+ L N GQE F I G RIAQL
Sbjct: 59 PDGYEAQILPRSGLAHKHGIVLGNLPGTIDSDYRGELKVSLWNRGQEPFTIEPGERIAQL 118
Query: 121 IIANSVRAHPSLISAMPMGKNERNEKGFGSTG 152
+I V+A + + ER GFGSTG
Sbjct: 119 VIVPVVQAEFEEVEEFD--ETERGAGGFGSTG 148
>gnl|CDD|129666 TIGR00576, dut, deoxyuridine 5'-triphosphate nucleotidohydrolase
(dut). Changed role from 132 to 123. RTD.
Length = 141
Score = 166 bits (422), Expect = 2e-42
Identities = 71/141 (50%), Positives = 91/141 (64%), Gaps = 5/141 (3%)
Query: 12 PHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSR 71
+ PLP Y T G++G DL+AA E V + PG R+L+P G I +P GY G+V R
Sbjct: 5 KLSENAPLPTYATEGAAGYDLYAA----EDVTIPPGERALVPTGIAIELPDGYYGRVAPR 60
Query: 72 SGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPS 131
SGLAL +GV NSPG IDSDYRGEIK++LINLG+E+F + +G RIAQL++ V P
Sbjct: 61 SGLALKHGVTIDNSPGVIDSDYRGEIKVILINLGKEDFTVKKGDRIAQLVVEKIVTV-PE 119
Query: 132 LISAMPMGKNERNEKGFGSTG 152
+ + ER E GFGSTG
Sbjct: 120 FEEVEELDETERGEGGFGSTG 140
>gnl|CDD|165376 PHA03094, PHA03094, dUTPase; Provisional.
Length = 144
Score = 84.8 bits (210), Expect = 9e-18
Identities = 50/135 (37%), Positives = 72/135 (53%), Gaps = 8/135 (5%)
Query: 19 LPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNY 78
+P + S+G DL++A D V P R L+ ++IP G++ RSGL+LNY
Sbjct: 17 IPTRSSPKSAGYDLYSAY--DYTVP--PKERILVKTDISLSIPKFCYGRIAPRSGLSLNY 72
Query: 79 GVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSLISAMPM 138
G+ G ID DYRG I ++ IN G+ F I G RIAQ+I +P L +
Sbjct: 73 GIDI--GGGVIDEDYRGNIGVIFINNGKCTFNIKTGDRIAQIIFERI--EYPELKEVQSL 128
Query: 139 GKNERNEKGFGSTGL 153
+R ++GFGS+GL
Sbjct: 129 DSTDRGDQGFGSSGL 143
>gnl|CDD|178162 PLN02547, PLN02547, dUTP pyrophosphatase.
Length = 157
Score = 81.8 bits (202), Expect = 7e-17
Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 8/134 (5%)
Query: 19 LPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNY 78
LP ++ ++G DL +A + ++L+P IAIP G ++ RSGLA +
Sbjct: 28 LPSRGSALAAGYDLSSA----YDTVVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKH 83
Query: 79 GVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSLISAMPM 138
+ G ID+DYRG + ++L N +F + G RIAQLI+ V P ++ +
Sbjct: 84 SIDV--GAGVIDADYRGPVGVILFNHSDVDFEVKVGDRIAQLILEKIVT--PEVVEVEDL 139
Query: 139 GKNERNEKGFGSTG 152
R GFGSTG
Sbjct: 140 DATVRGAGGFGSTG 153
>gnl|CDD|165079 PHA02703, PHA02703, ORF007 dUTPase; Provisional.
Length = 165
Score = 79.3 bits (195), Expect = 4e-16
Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 8/134 (5%)
Query: 19 LPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNY 78
+P + G++G+DL +A P G R ++ +I +P G G++ RSGLA+ +
Sbjct: 25 IPTRGSPGAAGLDLCSACDCIVP----AGCRCVVFTDLLIKLPDGCYGRIAPRSGLAVKH 80
Query: 79 GVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSLISAMPM 138
+ G ID+DYRG + ++L N G +F + +G RIAQLI + A P++ +
Sbjct: 81 FIDV--GAGVIDADYRGNVGVVLFNFGHNDFEVKKGDRIAQLICERA--AFPAVEEVACL 136
Query: 139 GKNERNEKGFGSTG 152
+R GFGSTG
Sbjct: 137 DDTDRGAGGFGSTG 150
>gnl|CDD|185476 PTZ00143, PTZ00143, deoxyuridine 5'-triphosphate
nucleotidohydrolase; Provisional.
Length = 155
Score = 54.0 bits (130), Expect = 2e-08
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 20/138 (14%)
Query: 26 GSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYGVA---- 81
G SG+DLF + +D+ ++ PG + I G A ++ G +++ +
Sbjct: 25 GDSGLDLF--IVKDQTIK--PGETAFIKLGIKAA---AFQKDEDGSDGKNVSWLLFPRSS 77
Query: 82 -------CLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSLIS 134
NS G ID+ YRGE+ + N+ E + I +G R+ QL+ + L+
Sbjct: 78 ISKTPLRLANSIGLIDAGYRGELIAAVDNIKDEPYTIKKGDRLVQLVSFDGEPITFELVD 137
Query: 135 AMPMGKNERNEKGFGSTG 152
+ + R E GFGSTG
Sbjct: 138 E--LDETTRGEGGFGSTG 153
>gnl|CDD|184417 PRK13956, dut, deoxyuridine 5'-triphosphate nucleotidohydrolase;
Provisional.
Length = 147
Score = 47.9 bits (114), Expect = 1e-06
Identities = 43/140 (30%), Positives = 61/140 (43%), Gaps = 17/140 (12%)
Query: 19 LPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNY 78
LP+ +T+ ++G DL A E + PG L+P G + PG + RS
Sbjct: 18 LPKRETAHAAGYDLKVA----ERTVIAPGEIKLVPTGVKAYMQPGEVLYLYDRSSNPRKK 73
Query: 79 GVACLNSPGTIDSDY------RGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSL 132
G+ +NS G ID DY G I + N+ + ++ G RI Q + P L
Sbjct: 74 GLVLINSVGVIDGDYYGNPANEGHIFAQMKNITDQEVVLEVGERIVQGVFM------PFL 127
Query: 133 ISAMPMGKNERNEKGFGSTG 152
I+ ER GFGSTG
Sbjct: 128 IADGDQADGERT-GGFGSTG 146
>gnl|CDD|162793 TIGR02274, dCTP_deam, deoxycytidine triphosphate deaminase.
Members of this family include the Escherichia coli
monofunctional deoxycytidine triphosphate deaminase
(dCTP deaminase) and a Methanocaldococcus jannaschii
bifunctional dCTP deaminase (3.5.4.13)/dUTP
diphosphatase (EC 3.6.1.23), which has the EC number
3.5.4.30 for the overall operation.
Length = 179
Score = 46.5 bits (111), Expect = 3e-06
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 36 LPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRG 95
+ E E + PG +L + +P G + RS LA G+ + G ID + G
Sbjct: 65 VEEGEEFVIPPGEFALATTLEYVKLPDDVVGFLEGRSSLA-RLGLFIHVTAGRIDPGFEG 123
Query: 96 EIKILLINLGQENFLIMRGMRIAQLIIA 123
I + L N G+ + GMRIAQL+
Sbjct: 124 NITLELFNAGKLPVKLRPGMRIAQLVFE 151
>gnl|CDD|179395 PRK02253, PRK02253, deoxyuridine 5'-triphosphate
nucleotidohydrolase; Provisional.
Length = 167
Score = 39.2 bits (92), Expect = 5e-04
Identities = 32/95 (33%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 36 LPEDEPVEL-LPGMRSLIPGGY------IIAIPPGYEGQVRSRSGLALNYGVACLNSPGT 88
LPE EP+E G L PG Y ++ IP + G RS L N C
Sbjct: 58 LPEREPLEFDDDGWIRLEPGIYKVRYNEVVNIPEDHVGFAYPRSSLLRN---GCTLETAV 114
Query: 89 IDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIA 123
D+ Y G + LL+ + RG RIAQL+ A
Sbjct: 115 WDAGYEGRGEGLLVVHNPHGIRLERGARIAQLVFA 149
>gnl|CDD|165396 PHA03124, PHA03124, dUTPase; Provisional.
Length = 418
Score = 32.2 bits (73), Expect = 0.052
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Query: 31 DLFAALPEDEPV-ELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYGVACLNSPGTI 89
+ A D PV ++ +R+ +P GY I I S A + A PG +
Sbjct: 34 AIIAEPRADSPVLKIDSAIRTALPPGYGIVI-----------SDTAEGHAAAWEIIPGLV 82
Query: 90 DSDYRGEIKILLI 102
D+DY G + ILL+
Sbjct: 83 DADYTGLLGILLV 95
Score = 30.7 bits (69), Expect = 0.16
Identities = 38/148 (25%), Positives = 57/148 (38%), Gaps = 34/148 (22%)
Query: 23 KTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYGVAC 82
K + +G D+ A PED +LPG + I +A + RS + L G+
Sbjct: 286 KEAEDAGYDIRA--PED--CTILPGGSTRIILPQKLACGKFRAAFILGRSSMNLK-GL-L 339
Query: 83 LNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLI------------------IAN 124
++ D D+ I + N+ G RIAQLI I N
Sbjct: 340 VDPEHVQDDDW---ISFNITNIRDAAAFFHAGDRIAQLIALEDKLEFLGEPDALPWKIVN 396
Query: 125 SVRAHPSLISAMPMGKNERNEKGFGSTG 152
SV+ +S+ R + GFGS+G
Sbjct: 397 SVQDEKKNLSS-------RGDGGFGSSG 417
>gnl|CDD|177535 PHA03131, PHA03131, dUTPase; Provisional.
Length = 286
Score = 31.5 bits (72), Expect = 0.086
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 14/78 (17%)
Query: 41 PVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALN----YGVACLNSPGTIDSDYRGE 96
P+ + PG +++P G I PPG+ L V C G ID YRGE
Sbjct: 35 PILVRPGEPTVVPLGLYIRRPPGF--------AFILWGSTSKNVTC--HTGLIDPGYRGE 84
Query: 97 IKILLINLGQENFLIMRG 114
+K++L+N + N + G
Sbjct: 85 LKLILLNKTKYNVTLRPG 102
Score = 28.8 bits (65), Expect = 0.62
Identities = 35/180 (19%), Positives = 56/180 (31%), Gaps = 56/180 (31%)
Query: 15 HGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMR-SLIPGGYIIAIPPGYEGQVRSRSG 73
+ P+Y +G D+ LP+D + + P + I P + + RSG
Sbjct: 122 SLLNPPQY--PDDAGFDVS--LPQD--LVIFPTTTFTFTLSLCCPPISPHFVPVIFGRSG 175
Query: 74 LALNYGVACLNSPG-TID-SDYRGE-IKILLINLGQENFLIMRGMRIAQLI--------- 121
LA S G T+ + +R +++ L N E + G RI Q++
Sbjct: 176 LA---------SKGLTVKPTKWRRSGLQLKLYNYTDETIFLPAGSRICQVVFMHKDHLPS 226
Query: 122 --------------------------IANSVRAHPSLISAM--PMGKNERNEKGFGSTGL 153
I + R KGFGS+GL
Sbjct: 227 FFNPLLSARCLGPRILFRWARVSFEDIPKDPCTSSKTLRQSEDGDSDPSRGTKGFGSSGL 286
>gnl|CDD|177534 PHA03127, PHA03127, dUTPase; Provisional.
Length = 322
Score = 31.5 bits (71), Expect = 0.092
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 47 GMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQ 106
G+R+ PGGY I + + SG + A G +DS YRG ++ ++
Sbjct: 69 GLRAAAPGGYAILM-------SQMCSGQTPSRPPAVAV--GIVDSGYRGILRAIVWAPPC 119
Query: 107 ENFLIMRGMRIAQLIIANSVRAHPSLISA 135
+ G+ + +L +A + P L +
Sbjct: 120 IETIPEAGLAL-RLTLARLAKTTPRLAAC 147
>gnl|CDD|165401 PHA03129, PHA03129, dUTPase; Provisional.
Length = 436
Score = 29.1 bits (65), Expect = 0.57
Identities = 34/151 (22%), Positives = 51/151 (33%), Gaps = 55/151 (36%)
Query: 55 GYIIAIPPGYEGQVRSRSGLALNYGVACLNSP------GTIDSDYRGEI----------- 97
GY I P E + S + + + C +S G + RG I
Sbjct: 289 GYDIPAPRDIELEPLSSTTIKIQQRYNCKDSSVIPCIFGRSSMNLRGLIVLPSRWLPNSW 348
Query: 98 -KILLINLGQENFLIMRGMRIAQLIIA------------NSVRAHPSLIS---------- 134
+ + NL ++ I G RIAQL++ N+ P++
Sbjct: 349 LTLTICNLTEKTVFIKAGDRIAQLLLVDQDAATLIPPENNTTDCFPTVGKCSRPYVTYGE 408
Query: 135 ------------AMPMGKNERNEKGFGSTGL 153
AM +ER E GFGSTG+
Sbjct: 409 PVWRETLHFDTEAMT---SERQEGGFGSTGI 436
>gnl|CDD|163330 TIGR03568, NeuC_NnaA, UDP-N-acetyl-D-glucosamine 2-epimerase,
UDP-hydrolysing. This family of enzymes catalyzes the
combined epimerization and UDP-hydrolysis of
UDP-N-acetylglucosamine to N-acetylmannosamine. This is
in contrast to the related enzyme WecB (TIGR00236) which
retains the UDP moiety. NeuC acts in concert with NeuA
and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Length = 365
Score = 28.6 bits (65), Expect = 0.62
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 99 ILLINLGQENFLIMRGMRIAQLIIANS 125
L +LGQE +L + ++ A +I NS
Sbjct: 265 RLFKSLGQERYLSL--LKNADAVIGNS 289
>gnl|CDD|180181 PRK05644, gyrB, DNA gyrase subunit B; Validated.
Length = 638
Score = 27.0 bits (61), Expect = 2.0
Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 48 MRSLIPGGYI-IAIPPGY 64
MR LI GY+ IA PP Y
Sbjct: 520 MRPLIEAGYVYIAQPPLY 537
>gnl|CDD|177383 PHA02548, 24, capsid vertex protein; Provisional.
Length = 412
Score = 27.0 bits (60), Expect = 2.4
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 31 DLFAALPEDEPVELLPGMRSLIPGG-YIIAIPPGYEGQVRSRSGLAL 76
DL A ++PV L G+R L P G Y G+V R + +
Sbjct: 38 DLVAIQETNQPVAALYGVRYLNPDGDMTFKTGATYAGEVGYRDRITI 84
>gnl|CDD|183851 PRK13028, PRK13028, tryptophan synthase subunit beta; Provisional.
Length = 402
Score = 26.8 bits (60), Expect = 2.6
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 26 GSSGMDLFAALPEDEPVELL---PGMRSLIPG 54
GS+ + LF+A +DE V L+ P R L G
Sbjct: 241 GSNAIGLFSAFLDDESVRLVGVEPAGRGLDLG 272
>gnl|CDD|178534 PLN02948, PLN02948, phosphoribosylaminoimidazole carboxylase.
Length = 577
Score = 25.8 bits (57), Expect = 4.5
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
Query: 8 FLQLPH--AHGIPLPEYK 23
+ Q H HGIPLPE+
Sbjct: 123 YAQKVHFSKHGIPLPEFM 140
>gnl|CDD|182005 PRK09632, PRK09632, ATP-dependent DNA ligase; Reviewed.
Length = 764
Score = 25.3 bits (56), Expect = 6.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 24 TSGSSGMDLFAALPE 38
TSGS G+ L+A L
Sbjct: 175 TSGSKGIHLYAPLDG 189
>gnl|CDD|151882 pfam11443, DUF2828, Domain of unknown function (DUF2828). This
is a uncharacterized domain found in eukaryotes and
viruses.
Length = 524
Score = 25.1 bits (55), Expect = 7.6
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 20 PEYKTSGSSGMDLFAALPEDEPVELLPGM 48
Y TSG++ +D F + D P + L +
Sbjct: 6 VTYLTSGNACLDFFFHVGPDTPSDDLKSL 34
>gnl|CDD|180427 PRK06149, PRK06149, hypothetical protein; Provisional.
Length = 972
Score = 25.0 bits (55), Expect = 8.5
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 6/26 (23%)
Query: 54 GGYIIAIPPGYEGQ----VRSRSGLA 75
GG IA+PPGY Q VR+R G+
Sbjct: 758 GG--IALPPGYLQQVYAAVRARGGVC 781
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.141 0.412
Gapped
Lambda K H
0.267 0.0819 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,661,190
Number of extensions: 168118
Number of successful extensions: 328
Number of sequences better than 10.0: 1
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 32
Length of query: 154
Length of database: 5,994,473
Length adjustment: 85
Effective length of query: 69
Effective length of database: 4,157,793
Effective search space: 286887717
Effective search space used: 286887717
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.0 bits)