RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781025|ref|YP_003065438.1| deoxyuridine 5 27-triphosphate
nucleotidohydrolase [Candidatus Liberibacter asiaticus str. psy62]
(154 letters)
>1dun_A Deoxyuridine 5'-triphosphate nucleoditohydrolase; dutpase,
EIAV, trimeric enzyme, aspartyl protease; 1.90A {Equine
infectious anemia virus} (A:)
Length = 134
Score = 125 bits (315), Expect = 3e-30
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 9/141 (6%)
Query: 14 AHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSG 73
A+ + K +G DL + + +IP I +PP G V +S
Sbjct: 3 AYQGTQIKEKRDEDAGFDLCVP----YDIMIPVSDTKIIPTDVKIQVPPNSFGWVTGKSS 58
Query: 74 LALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSLI 133
+A L + G ID Y GEI+++ N+G+ N ++ G + AQLII S
Sbjct: 59 MAKQG---LLINGGIIDEGYTGEIQVICTNIGKSNIKLIEGQKFAQLIILQHH--SNSRQ 113
Query: 134 SAMPMGKNERNEKGFGSTGLY 154
++R +KGFGSTG++
Sbjct: 114 PWDENKISQRGDKGFGSTGVF 134
>1euw_A Dutpase, deoxyuridine 5'-triphosphate nucleotidohydrolase;
jelly roll, mercury derivative; 1.05A {Escherichia coli}
(A:)
Length = 152
Score = 125 bits (315), Expect = 3e-30
Identities = 58/153 (37%), Positives = 78/153 (50%), Gaps = 5/153 (3%)
Query: 1 MQSIDIPFLQLPHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAI 60
M+ ID+ L PLP Y TSGS+G+DL A ++ VEL PG +L+P G I I
Sbjct: 2 MKKIDVKILDPRVGKEFPLPTYATSGSAGLDLRAC--LNDAVELAPGDTTLVPTGLAIHI 59
Query: 61 PPG-YEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQ 119
+ RSGL +G+ N G IDSDY+G++ I + N GQ++F I G RIAQ
Sbjct: 60 ADPSLAAMMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQ 119
Query: 120 LIIANSVRAHPSLISAMPMGKNERNEKGFGSTG 152
+I V +R E GFG +G
Sbjct: 120 MIFVPVV--QAEFNLVEDFDATDRGEGGFGHSG 150
>3hza_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; jelly
roll, domain swapping, nucleotide metabolism; HET: DUP;
1.20A {Mycobacterium tuberculosis} PDB: 1six_A* 1slh_A*
1sm8_A* 1smc_A* 1snf_A* 2py4_A* 3h6d_A* 3i93_A* 1mq7_A
1sjn_A* (A:)
Length = 174
Score = 124 bits (313), Expect = 5e-30
Identities = 59/158 (37%), Positives = 85/158 (53%), Gaps = 8/158 (5%)
Query: 1 MQSIDIPFLQLPHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAI 60
+ + G+PLP G +G+DL++A E VEL PG R+L+ G +A+
Sbjct: 18 GSHMSTTLAIVRLDPGLPLPSRAHDGDAGVDLYSA----EDVELAPGRRALVRTGVAVAV 73
Query: 61 PPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQEN-FLIMRGMRIAQ 119
P G G V RSGLA G++ +NSPGTID+ YRGEIK+ LINL ++ RG RIAQ
Sbjct: 74 PFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQ 133
Query: 120 LIIANSVRAHPSLISAMPMGKN---ERNEKGFGSTGLY 154
L++ +S+ R + G+GS+G +
Sbjct: 134 LLVQRVELVELVEVSSFDEAGLASTSRGDGGWGSSGGH 171
>2ol1_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; fold,
jelly-roll, superfamily, dutpase-like; HET: UMP; 1.80A
{Vaccinia virus} PDB: 2oke_A* 2okd_A* 2ol0_A* 2okb_A
(A:)
Length = 147
Score = 122 bits (307), Expect = 2e-29
Identities = 49/151 (32%), Positives = 74/151 (49%), Gaps = 9/151 (5%)
Query: 2 QSIDIPFLQLPHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIP 61
+I+ P + + P ++ G++G DL++A + PG R LI +++P
Sbjct: 4 MNINSPVRFVKETNRAKSPTRQSPGAAGYDLYSA----YDYTIPPGERQLIKTDISMSMP 59
Query: 62 PGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLI 121
G++ RSGL+L G ID DYRG I ++LIN G+ F + G RIAQLI
Sbjct: 60 KFCYGRIAPRSGLSLKG---IDIGGGVIDEDYRGNIGVILINNGKCTFNVNTGDRIAQLI 116
Query: 122 IANSVRAHPSLISAMPMGKNERNEKGFGSTG 152
+P L + R ++GFGSTG
Sbjct: 117 YQRIY--YPELEEVQSLDSTNRGDQGFGSTG 145
>3c2t_A Deoxyuridine triphosphatase; dutpase chlorella virus,
hydrolase; HET: DUD; 3.00A {Paramecium bursaria
chlorella VIRUSIL3A} PDB: 3c3i_A* (A:)
Length = 141
Score = 119 bits (299), Expect = 2e-28
Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 12/153 (7%)
Query: 1 MQSIDIPFLQLPHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAI 60
M S+ + L P + G++G D+ + E V + R + G I +
Sbjct: 1 MSSLLVKKL----VESATTPMRGSEGAAGYDISSV----EDVVVPAMGRIAVSTGISIRV 52
Query: 61 PPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQL 120
P G G++ RSGLA YG+ G ID DY GE+K++L N + +++I +G RIAQL
Sbjct: 53 PDGTYGRIAPRSGLAYKYGI--DVLAGVIDEDYTGEVKVILYNTTERDYIIKKGDRIAQL 110
Query: 121 IIANSVRAHPSLISAMPMGKNERNEKGFGSTGL 153
I+ V P + + + R GFGSTG+
Sbjct: 111 ILEQIV--TPGVAVVLDLSDTARGSGGFGSTGI 141
>3ca9_A Deoxyuridine triphosphatase; dutpase chlorella virus,
hydrolase; HET: DUD; 3.00A {Paramecium bursaria
chlorella VIRUSIL3A} (A:)
Length = 165
Score = 118 bits (298), Expect = 2e-28
Identities = 47/152 (30%), Positives = 71/152 (46%), Gaps = 8/152 (5%)
Query: 3 SIDIPFLQLPHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPP 62
L P + G++G D+ + E V + R + G I +P
Sbjct: 15 EFMSSLLVKKLVESATTPMRGSEGAAGYDISSV----EDVVVPAMGRIAVSTGISIRVPD 70
Query: 63 GYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLII 122
G G++ RSGLA YG+ G ID DY GE+K++L N + +++I +G RIAQLI+
Sbjct: 71 GTYGRIAPRSGLAYKYGID--VLAGVIDEDYTGEVKVILYNTTERDYIIKKGDRIAQLIL 128
Query: 123 ANSVRAHPSLISAMPMGKNERNEKGFGSTGLY 154
V P + + + R GFGSTG+
Sbjct: 129 EQIV--TPGVAVVLDLSDTARGSGGFGSTGIL 158
>1pkh_A Bifunctional deaminase/diphosphatase; DCTP deaminase,
dutpase, DCD-DUT, MJ0430, DCTP, DUTP, hydrolase; 1.42A
{Methanocaldococcus jannaschii} (A:)
Length = 204
Score = 116 bits (292), Expect = 1e-27
Identities = 22/153 (14%), Positives = 51/153 (33%), Gaps = 12/153 (7%)
Query: 1 MQSIDIPFLQLPHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAI 60
+ ++ +++ ++ + Y + V+ + L I +
Sbjct: 51 SKELNYKRIKIKNSILVCPLNYNLTEEKINYFKEK----YNVDYVVEGGVLGTTNEYIEL 106
Query: 61 PPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQL 120
P Q + RS L + + G ID+ ++G+I + ++ + ++ + RI QL
Sbjct: 107 PNDISAQYQGRSSLG-RVFLTSHQTAGWIDAGFKGKITLEIVAFDKP-VILYKNQRIGQL 164
Query: 121 IIANSVRAHPSLISAMPMGKNERNEKGFGSTGL 153
I L A + K +
Sbjct: 165 IF------SKLLSPADVGYSERKTSKYAYQKSV 191
>3f4f_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; trimer,
beta barrel, UMP, product complex, DUTP pyrophosphatase,
DITP; HET: UMP; 2.00A {Saccharomyces cerevisiae} PDB:
3hhq_A (A:)
Length = 167
Score = 115 bits (290), Expect = 2e-27
Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 8/153 (5%)
Query: 1 MQSIDIPFLQLP-HAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIA 59
M + L++ + +P ++ ++G D++A+ + + + + ++
Sbjct: 21 MTATSDKVLKIQLRSASATVPTKGSATAAGYDIYAS----QDITIPAMGQGMVSTDISFT 76
Query: 60 IPPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQ 119
+P G G++ RSGLA+ G G +D DY GE+K++L N Q +F I +G R+AQ
Sbjct: 77 VPVGTYGRIAPRSGLAVKNG--IQTGAGVVDRDYTGEVKVVLFNHSQRDFAIKKGDRVAQ 134
Query: 120 LIIANSVRAHPSLISAMPMGKNERNEKGFGSTG 152
LI+ V ++ + ++ R GFGSTG
Sbjct: 135 LILEKIVDD-AQIVVVDSLEESARGAGGFGSTG 166
>2baz_A YOSS, hypothetical protein BSU20020; homotrimer, beta
barrel, unknown function; 2.30A {Bacillus subtilis} (A:)
Length = 142
Score = 115 bits (288), Expect = 3e-27
Identities = 43/139 (30%), Positives = 56/139 (40%), Gaps = 8/139 (5%)
Query: 15 HGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGL 74
K +DL AA E V + L+P G + +P GYE V RS
Sbjct: 9 DETQTRINKMEQGDWIDLRAA----EDVAIKKDEFKLVPLGVAMELPEGYEAHVVPRSST 64
Query: 75 ALNYGVACLNSPGTIDSDYRGEIKILLI-NLGQENFLIMRGMRIAQLIIANSVRAHPSLI 133
N+GV NS G ID Y+G+ + I +G RI Q I + A LI
Sbjct: 65 YKNFGVIQTNSMGVIDESYKGDNDFWFFPAYALRDTKIKKGDRICQFRIMKKMPA-VDLI 123
Query: 134 SAMPMGKNERNEKGFGSTG 152
+G +R G GSTG
Sbjct: 124 EVDRLGNGDRG--GHGSTG 140
>1xs1_A DCTP deaminase, deoxycytidine triphosphate deaminase;
nucleotide metabolism, trimer, hydrolase; HET: DUT;
1.80A {Escherichia coli} (A:)
Length = 193
Score = 114 bits (286), Expect = 7e-27
Identities = 30/153 (19%), Positives = 45/153 (29%), Gaps = 11/153 (7%)
Query: 1 MQSIDIPFLQLPHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAI 60
+ F+ L S + L E L PG +L + +
Sbjct: 44 FRGHTAAFIDLSGPKDEVSAALDRVMSDEIVLDE----GEAFYLHPGELALAVTLESVTL 99
Query: 61 PPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQL 120
P G + RS LA G+ + ID + G I + N G+ + GM I L
Sbjct: 100 PADLVGWLDGRSSLA-RLGLMVHVTAHRIDPGWSGCIVLEFYNSGKLPLALRPGMLIGAL 158
Query: 121 IIANSVRAHPSLISAMPMGKNERNEKGFGSTGL 153
P A+ + K G
Sbjct: 159 SF------EPLSGPAVRPYNRREDAKYRNQQGA 185
>2p9o_A DUTP pyrophosphatase-like protein; dutpase, magnesium
binding, hydrolase; 2.00A {Arabidopsis thaliana} PDB:
2pc5_A (A:)
Length = 169
Score = 113 bits (284), Expect = 1e-26
Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 8/138 (5%)
Query: 16 GIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLA 75
+P + S+G DL +A ++ ++LIP IA+P G ++ RSGLA
Sbjct: 40 KAVIPTRGSPLSAGYDLSSA----VDSKVPARGKALIPTDLSIAVPEGTYARIAPRSGLA 95
Query: 76 LNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSLISA 135
+ + G ID+DYRG + ++L N +F + G RIAQLII V P ++
Sbjct: 96 WKHSID--VGAGVIDADYRGPVGVILFNHSDADFEVKFGDRIAQLIIEKIV--TPDVVEV 151
Query: 136 MPMGKNERNEKGFGSTGL 153
+ + R + GFGSTG+
Sbjct: 152 DDLDETVRGDGGFGSTGV 169
>1f7d_A POL polyprotein; eight stranded beta-barrel, viral protein,
hydrolase; 1.40A {Feline immunodeficiency virus} (A:)
Length = 136
Score = 113 bits (283), Expect = 1e-26
Identities = 46/139 (33%), Positives = 70/139 (50%), Gaps = 11/139 (7%)
Query: 16 GIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLA 75
L K S +G DL AA + + LLPG +IP G + +P GY G + +S +
Sbjct: 6 DGILD--KRSEDAGYDLLAA----KEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIG 59
Query: 76 LNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSLISA 135
G ID YRGEI +++IN+ +++ +M +IAQLII H L
Sbjct: 60 SKGLD---VLGGVIDEGYRGEIGVIMINVSRKSITLMERQKIAQLIILPCK--HEVLEQG 114
Query: 136 MPMGKNERNEKGFGSTGLY 154
+ +ER + G+GSTG++
Sbjct: 115 KVVMDSERGDNGYGSTGVF 133
>3ecy_A CG4584-PA, isoform A (bcDNA.LD08534); jelly-roll, dimeric
assembly, hydrolase; 1.88A {Drosophila melanogaster}
(A:)
Length = 160
Score = 112 bits (281), Expect = 3e-26
Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 9/151 (5%)
Query: 3 SIDIPFLQLPHAH-GIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIP 61
ID L+ P ++ ++G+DL +A V + ++++ + +P
Sbjct: 16 KIDTCVLRFAKLTENALEPVRGSAKAAGVDLRSA----YDVVVPARGKAIVKTDLQVQVP 71
Query: 62 PGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLI 121
G G+V RSGLA+ + G +D DYRG + ++L N +F + G RIAQ I
Sbjct: 72 EGSYGRVAPRSGLAVKNFIDV--GAGVVDEDYRGNLGVVLFNHSDVDFEVKHGDRIAQFI 129
Query: 122 IANSVRAHPSLISAMPMGKNERNEKGFGSTG 152
+P L+ + ER E GFGSTG
Sbjct: 130 CERIF--YPQLVMVDKLEDTERGEAGFGSTG 158
>2bsy_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; dutpase,
monomer, nucleotide metabolism, structural proteomics in
europe, spine; HET: UMP; 1.5A {Human herpesvirus 4}
(A:117-244)
Length = 128
Score = 112 bits (281), Expect = 3e-26
Identities = 20/138 (14%), Positives = 39/138 (28%), Gaps = 17/138 (12%)
Query: 15 HGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGL 74
P+ + G G+D+ + + L P + P + + RSGL
Sbjct: 3 DKGPINHPQYPGDVGLDVSLP----KDLALFPHQTVSVTLTVPPPSIPHHRPTIFGRSGL 58
Query: 75 ALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSLIS 134
A+ + RG + + L N + + + R QL+ +
Sbjct: 59 AMQGILVK------PCRWRRGGVDVSLTNFSDQTVFLNKYRRFCQLVYLH-------KHH 105
Query: 135 AMPMGKNERNEKGFGSTG 152
+ G
Sbjct: 106 LTSFYSPHSDAGVLGPRS 123
>3ehw_A DUTP pyrophosphatase; jelly-roll, FULL-length C-terminal
ARM, enzyme-ligand complex, hydrolase; HET: DUP; 1.80A
{Homo sapiens} (A:)
Length = 164
Score = 111 bits (280), Expect = 3e-26
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 8/137 (5%)
Query: 16 GIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLA 75
P ++ ++G DL++A + P ++++ IA+P G G+V RSGLA
Sbjct: 34 HATAPTRGSARAAGYDLYSA----YDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLA 89
Query: 76 LNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSLISA 135
+ + G ID DYRG + ++L N G+E F + +G RIAQLI +P +
Sbjct: 90 AKHFIDV--GAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIF--YPEIEEV 145
Query: 136 MPMGKNERNEKGFGSTG 152
+ ER GFGSTG
Sbjct: 146 QALDDTERGSGGFGSTG 162
>3km3_A DCTP deaminase, deoxycytidine triphosphate deaminase;
ssgcid, NIH, niaid, SBRI, UW, decode, iodide phasing,
hydrolase; 2.10A {Anaplasma phagocytophilum HZ} (A:)
Length = 206
Score = 110 bits (277), Expect = 7e-26
Identities = 14/142 (9%), Positives = 32/142 (22%), Gaps = 14/142 (9%)
Query: 12 PHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSR 71
+ + K + + P L IP +
Sbjct: 73 FANTHSVVVDPKNFSQDSFVDREG----DFCIIPPNSFMLAKTVEYFNIPRDVMVVCVGK 128
Query: 72 SGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPS 131
S A + + ++ + G + + N + Q + +
Sbjct: 129 STYARCG---IVVNVTPLEPGWSGYVTLEFSNTSPLPVKVYAFEGACQFLFFSGK--ERC 183
Query: 132 LISAMPMGKNERNEKGFGSTGL 153
S +E K G + +
Sbjct: 184 SKSY-----DEAGGKYMGQSDV 200
>2qxx_A DCTP deaminase, deoxycytidine triphosphate deaminase;
distorted beta barrel, hydrolase, nucleotide metabolism;
HET: TTP 1PE; 2.00A {Mycobacterium tuberculosis H37RV}
PDB: 2qlp_A* (A:)
Length = 190
Score = 110 bits (275), Expect = 1e-25
Identities = 31/142 (21%), Positives = 50/142 (35%), Gaps = 10/142 (7%)
Query: 12 PHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSR 71
I + + +S + EP L PG L + +P G++ +
Sbjct: 46 TRYTHIDPAKQQDELTSLVQPVD----GEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGK 101
Query: 72 SGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPS 131
S L G+ ++ G ID + G I + L N+ + GM+I QL +
Sbjct: 102 SSLG-RLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSP--- 157
Query: 132 LISAMPMGKNERNEKGFGSTGL 153
S P G + K G G
Sbjct: 158 --SEHPYGSSRAGSKYQGQRGP 177
>2d4n_A DU; jelly roll, hydrolase; HET: UPR; 1.53A {Mason-pfizer
monkey virus} PDB: 2d4m_A 2d4l_A* (A:)
Length = 152
Score = 108 bits (272), Expect = 3e-25
Identities = 40/144 (27%), Positives = 60/144 (41%), Gaps = 15/144 (10%)
Query: 12 PHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGM-RSLIPGGYIIAIPPGYEGQVRS 70
I T GS+G+DL + L P M + G +PP G +
Sbjct: 23 QQKQPISKLTRATPGSAGLDLCST----SHTVLTPEMGPQALSTGIYGPLPPNTFGLILG 78
Query: 71 RSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHP 130
RS + + PG ID+DY GEIKI+ + +G RIAQLI+ P
Sbjct: 79 RSSITMKGLQ---VYPGVIDNDYTGEIKIMAKA-VNNIVTVSQGNRIAQLIL------LP 128
Query: 131 SLISAMPMGKNERNEKGFGSTGLY 154
+ + + + R + FGS+ +Y
Sbjct: 129 LIETDNKVQQPYRGQGSFGSSDIY 152
>1vyq_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; drug
design, dutpase, deoxyuridine nucleotidohydrolase,
malaria; HET: DUX; 2.4A {Plasmodium falciparum} (A:)
Length = 173
Score = 107 bits (268), Expect = 7e-25
Identities = 32/158 (20%), Positives = 48/158 (30%), Gaps = 24/158 (15%)
Query: 16 GIPLPEYKTSGSSGMDLFAA---------------------LPEDEPVELLPGMRSLIPG 54
+ G SG+DLF L
Sbjct: 15 MYKNHKTHHEGDSGLDLFIVKDEVLKPKSTTFVKLGIKAIALQYKSNYYYKCEKSENKKK 74
Query: 55 GYIIAIPPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRG 114
+ + RS ++ + NS G ID+ YRGEI L N + + I +
Sbjct: 75 DDDKSNIVNTSFLLFPRSSISKT-PLRLANSIGLIDAGYRGEIIAALDNTSDQEYHIKKN 133
Query: 115 MRIAQLIIANSVRAHPSLISAMPMGKNERNEKGFGSTG 152
++ QL+ S + + R E GFGST
Sbjct: 134 DKLVQLVSFTGE--PLSFELVEELDETSRGEGGFGSTS 169
>2yzj_A 167AA long hypothetical dutpase; all beta proteins,
hypothetical protein, NPPSFA; HET: DUD; 1.66A
{Sulfolobus tokodaii} PDB: 2zdc_A (A:)
Length = 169
Score = 96.1 bits (239), Expect = 2e-21
Identities = 22/147 (14%), Positives = 43/147 (29%), Gaps = 16/147 (10%)
Query: 3 SIDIPFLQLPHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPP 62
D+ + + E ++ ++ E L L P
Sbjct: 38 GYDLRICGDKYYELVQGAELPEKKATLREIEF----KERAILSANHTYLFESCEEFNXPA 93
Query: 63 GYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLII 122
+ +S LA N + P ID+ Y+G++ + + N + +G LI
Sbjct: 94 DLAVLITLKSTLARNGFL---APPTVIDAGYKGKVNVAITA--VYNSSLKKGXATHHLIF 148
Query: 123 ANSVRAHPSLISAMPMGKNERNEKGFG 149
P+ N + + G
Sbjct: 149 LKLD--KPTERLY-----NGKYQGGIL 168
>2r9q_A AGR_C_764P, 2'-deoxycytidine 5'-triphosphate deaminase;
structural genomics, MCSG, PSI-2, protein structure
initiative; 2.20A {Agrobacterium tumefaciens str}
(A:175-370)
Length = 196
Score = 92.8 bits (230), Expect = 2e-20
Identities = 17/159 (10%), Positives = 41/159 (25%), Gaps = 23/159 (14%)
Query: 4 IDIPFLQLPHAHGIPLP--EYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIP 61
I + + + L P ++ + +P
Sbjct: 43 IGYRGKHHTAVVDVDKKAQHDVLDFWEPLFARG----RAELILDPDEFYILVSREAVHVP 98
Query: 62 PGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIK-------ILLINLGQENFLIMRG 114
P Y ++ L G ++ G D + +L + + F++ G
Sbjct: 99 PLYAAEMTPFDPLV---GEFRVHYAGFFDPGFGHAQAGGTGSRAVLEVRSHEVPFILEHG 155
Query: 115 MRIAQLIIANSVRAHPSLISAMPMGKNERNEKGFGSTGL 153
+ +L+ + + L + + GL
Sbjct: 156 QIVGRLVYEHMLEKPEGL-------YGTGLGSNYQAQGL 187
>2r9q_A AGR_C_764P, 2'-deoxycytidine 5'-triphosphate deaminase;
structural genomics, MCSG, PSI-2, protein structure
initiative; 2.20A {Agrobacterium tumefaciens str}
(A:1-174)
Length = 174
Score = 90.4 bits (224), Expect = 9e-20
Identities = 16/128 (12%), Positives = 37/128 (28%), Gaps = 10/128 (7%)
Query: 1 MQSIDIPFLQLPHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAI 60
+ S K + S ++ + + L G ++P +A+
Sbjct: 47 LGSKAYRVRASFMPGPGTRVIDKLNRFSLHEVDLS----QGAVLETGCVYIVPLMESLAL 102
Query: 61 PPGYEGQVRSRSGLALNYGVACLN-----SPGTIDSDYRGEIKILLINLGQENFLIMRGM 115
P +S + I + Y G + + + ++ RG
Sbjct: 103 PADMSASANPKSSTGRLDIFTRVMTDNAQEFDKIPAGYTGPLYLEISP-RTFPIVVRRGS 161
Query: 116 RIAQLIIA 123
R++Q+
Sbjct: 162 RLSQIRFR 169
>1ujn_A Dehydroquinate synthase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, lyase; 1.80A {Thermus thermophilus HB8}
(A:161-348)
Length = 188
Score = 25.7 bits (56), Expect = 3.1
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 117 IAQLIIANSVRAHPSLISAMPMGKNERNEKGFGST 151
+ +A +V + P+ K +R G T
Sbjct: 38 RLEAFLARAVAVKVRVTEEDPLEKGKRRLLNLGHT 72
>1whn_A Hypothetical protein riken cDNA 2310016K04;
double-stranded RNA binding domain, DSRBD, DSRM, riken
structural genomics/proteomics initiative, RSGI; NMR
{Mus musculus} (A:)
Length = 128
Score = 25.4 bits (55), Expect = 3.8
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 10 QLPHAHGIPLPEYKTSGSSGMDLFAA 35
+ +P P Y+T + +F +
Sbjct: 34 EWCRREKLPQPVYETVQRTIDRMFCS 59
>2o99_A Acetate operon repressor; ICLR, DNA binding protein; HET:
MSE; 1.70A {Escherichia coli} (A:)
Length = 182
Score = 25.0 bits (54), Expect = 4.7
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 9/78 (11%)
Query: 16 GIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRS--RSG 73
G LP + + +G A L E++ +LL + P + + + G
Sbjct: 57 GGKLPXH--ASGAGKAFLAQLSEEQVTKLLHRKGLHAYTHATLVSPVHLKEDLAQTRKRG 114
Query: 74 LALNY-----GVACLNSP 86
+ + G+ CL +
Sbjct: 115 YSFDDEEHALGLRCLAAC 132
>1ysp_A Transcriptional regulator KDGR; ICLR, structural genomics,
PSI, protein structure initiative, midwest center for
structural genomics, MCSG; 1.80A {Escherichia coli} (A:)
Length = 181
Score = 24.5 bits (53), Expect = 6.8
Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 9/78 (11%)
Query: 16 GIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRS--RSG 73
G P Y S + G L A DE ++L G+ I + G
Sbjct: 53 GRRNPLY--STAIGKVLLAWRDRDEVKQILEGVEYKRSTERTITSTEALLPVLDQVREQG 110
Query: 74 LALNY-----GVACLNSP 86
+ G+ C+ P
Sbjct: 111 YGEDNEEQEEGLRCIAVP 128
>3k1r_A Harmonin; protein-protein complex, alternative splicing,
coiled coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
(A:19-81)
Length = 63
Score = 24.3 bits (53), Expect = 9.2
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 19 LPEYKTSGSS---GMDLFAALPEDEPVELLPGMRSLIP 53
L Y + DL + E + L +R LIP
Sbjct: 12 LRMYHQTMDVAVLVGDLKLVINEPSRLPLFDAIRPLIP 49
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.319 0.141 0.412
Gapped
Lambda K H
0.267 0.0638 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,187,291
Number of extensions: 52241
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 37
Length of query: 154
Length of database: 4,956,049
Length adjustment: 81
Effective length of query: 73
Effective length of database: 2,217,844
Effective search space: 161902612
Effective search space used: 161902612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)