RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781025|ref|YP_003065438.1| deoxyuridine 5 27-triphosphate nucleotidohydrolase [Candidatus Liberibacter asiaticus str. psy62] (154 letters) >3mdx_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; metal-binding, nucleotide metabolism, structural genomics; 1.45A {Brucella melitensis} PDB: 3mbq_A Length = 178 Score = 162 bits (412), Expect = 2e-41 Identities = 78/147 (53%), Positives = 103/147 (70%), Gaps = 2/147 (1%) Query: 6 IPFLQLPHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYE 65 + ++L HA G+ LP Y+T+GS+GMDL AA+ ED + LLPG R+L+P G I+ IP GYE Sbjct: 32 LGIIRLEHAKGLDLPAYETAGSAGMDLRAAVAEDRQIVLLPGRRTLVPTGLILEIPQGYE 91 Query: 66 GQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANS 125 Q+R RSGLA G+ CLN+PGTIDSDYRGE+K+LLINLG ++F I RGMRIAQ + A Sbjct: 92 VQIRPRSGLAFKNGITCLNTPGTIDSDYRGEVKVLLINLGDDDFRIERGMRIAQAVFAPV 151 Query: 126 VRAHPSLISAMPMGKNERNEKGFGSTG 152 ++ + + + R GFGSTG Sbjct: 152 IQPKIEERAKIS--ETARGAGGFGSTG 176 >1euw_A Dutpase, deoxyuridine 5'-triphosphate nucleotidohydrolase; jelly roll, mercury derivative; 1.05A {Escherichia coli} SCOP: b.85.4.1 PDB: 1dud_A 1dup_A 1eu5_A 1rn8_A* 1seh_A* 2hr6_A* 2hrm_A* 1rnj_A* 1syl_A* Length = 152 Score = 159 bits (404), Expect = 3e-40 Identities = 61/153 (39%), Positives = 84/153 (54%), Gaps = 5/153 (3%) Query: 1 MQSIDIPFLQLPHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAI 60 M+ ID+ L PLP Y TSGS+G+DL A L ++ VEL PG +L+P G I I Sbjct: 2 MKKIDVKILDPRVGKEFPLPTYATSGSAGLDLRACL--NDAVELAPGDTTLVPTGLAIHI 59 Query: 61 PP-GYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQ 119 + RSGL +G+ N G IDSDY+G++ I + N GQ++F I G RIAQ Sbjct: 60 ADPSLAAMMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQ 119 Query: 120 LIIANSVRAHPSLISAMPMGKNERNEKGFGSTG 152 +I V+A +L+ +R E GFG +G Sbjct: 120 MIFVPVVQAEFNLVEDFD--ATDRGEGGFGHSG 150 >3lqw_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; emerald biostructures, ALS collaborative crystallography; 1.30A {Entamoeba histolytica} Length = 163 Score = 125 bits (315), Expect = 4e-30 Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 8/135 (5%) Query: 18 PLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALN 77 +P + ++G+DL++ + + P R L+ G + IP G++ RS LAL Sbjct: 36 IVPTRGSKCAAGIDLYS----NTNFIIQPHERFLVSTGVSVQIPHQCYGRIAPRSSLALK 91 Query: 78 YGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSLISAMP 137 YG+ G ID DYRGEIK++L N E F +G RIAQLII S + + Sbjct: 92 YGIDV--GAGVIDEDYRGEIKVILFNHSNEIFNGRKGDRIAQLIIERISYCRISEVKELN 149 Query: 138 MGKNERNEKGFGSTG 152 +R GFGSTG Sbjct: 150 --TTDRGTNGFGSTG 162 >3h6x_A Dutpase; jelly-roll beta-barrel, hydrolase; 1.70A {Streptococcus mutans} Length = 148 Score = 123 bits (309), Expect = 2e-29 Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 17/140 (12%) Query: 19 LPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNY 78 LP+ +T+ ++G DL A E E+ G L+P G + G + RS Sbjct: 19 LPKRETAHAAGYDLKVA----ERTEISAGAIVLVPTGVKAYMQVGEVLYLFDRSSNPRKK 74 Query: 79 GVACLNSPGTIDSDY------RGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSL 132 G+ +NS G ID DY G I + N+ + ++ G R+ Q + + Sbjct: 75 GLVLINSVGVIDGDYYNNPNNEGHIFAQMKNMTDQTVVLEAGERVVQGVFMPFLLIDGDK 134 Query: 133 ISAMPMGKNERNEKGFGSTG 152 + GFGSTG Sbjct: 135 AT-------GTRTGGFGSTG 147 >2xcd_A Probable deoxyuridine 5'-triphosphate nucleotidoh YNCF; hydrolase; 1.84A {Bacillus subtilis} PDB: 2xce_A* 2baz_A Length = 144 Score = 121 bits (306), Expect = 5e-29 Identities = 42/136 (30%), Positives = 56/136 (41%), Gaps = 8/136 (5%) Query: 18 PLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALN 77 K +DL AA E V + L+P G + +P GYE V RS N Sbjct: 14 QTRISKIEQGDWIDLRAA----EDVTIKKDEFKLVPLGVAMELPEGYEAHVVPRSSTYKN 69 Query: 78 YGVACLNSPGTIDSDYRGEIKILLINL-GQENFLIMRGMRIAQLIIANSVRAHPSLISAM 136 +GV NS G ID Y+G+ + I +G RI Q I + A L+ Sbjct: 70 FGVIQTNSMGVIDESYKGDNDFWFFPAYALRDTEIKKGDRICQFRIMKKMPA-VELVEVE 128 Query: 137 PMGKNERNEKGFGSTG 152 +G +R G GSTG Sbjct: 129 HLGNEDRG--GLGSTG 142 >3p48_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; trimer, beta barrel, DUMPPNP pyrophosphatase, phosphoprotein, structural genomics; HET: DUP; 1.67A {Saccharomyces cerevisiae} Length = 147 Score = 121 bits (305), Expect = 7e-29 Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 8/153 (5%) Query: 1 MQSIDIPFLQ-LPHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIA 59 M + L+ + +P ++ ++G D++A+ + + + + ++ Sbjct: 1 MTATSDKVLKIQLRSASATVPTKGSATAAGYDIYAS----QDITIPAMGQGMVSTDISFT 56 Query: 60 IPPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQ 119 +P G G++ RSGLA+ G G +D DY GE+K++L N Q +F I +G R+AQ Sbjct: 57 VPVGTYGRIAPRSGLAVKNG--IQTGAGVVDRDYTGEVKVVLFNHSQRDFAIKKGDRVAQ 114 Query: 120 LIIANSVRAHPSLISAMPMGKNERNEKGFGSTG 152 LI+ V ++ + ++ R GFGSTG Sbjct: 115 LILEKIVD-DAQIVVVDSLEESARGAGGFGSTG 146 >1f7d_A POL polyprotein; eight stranded beta-barrel, viral protein, hydrolase; 1.40A {Feline immunodeficiency virus} SCOP: b.85.4.1 PDB: 1f7k_A* 1f7n_A* 1f7o_A 1f7p_A* 1f7q_A* 1f7r_A* 1dut_A Length = 136 Score = 119 bits (301), Expect = 2e-28 Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 9/132 (6%) Query: 23 KTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYGVAC 82 K S +G DL AA + + LLPG +IP G + +P GY G + +S + Sbjct: 11 KRSEDAGYDLLAA----KEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSKG---L 63 Query: 83 LNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSLISAMPMGKNE 142 G ID YRGEI +++IN+ +++ +M +IAQLII H L + +E Sbjct: 64 DVLGGVIDEGYRGEIGVIMINVSRKSITLMERQKIAQLIILPCK--HEVLEQGKVVMDSE 121 Query: 143 RNEKGFGSTGLY 154 R + G+GSTG++ Sbjct: 122 RGDNGYGSTGVF 133 >3hza_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; jelly roll, domain swapping, nucleotide metabolism; HET: DUP; 1.20A {Mycobacterium tuberculosis} PDB: 1six_A* 1slh_A* 1sm8_A* 1smc_A* 1snf_A* 2py4_A* 3h6d_A* 3i93_A* 1mq7_A 1sjn_A* Length = 174 Score = 107 bits (269), Expect = 9e-25 Identities = 59/143 (41%), Positives = 84/143 (58%), Gaps = 8/143 (5%) Query: 16 GIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLA 75 G+PLP G +G+DL++A E VEL PG R+L+ G +A+P G G V RSGLA Sbjct: 33 GLPLPSRAHDGDAGVDLYSA----EDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLA 88 Query: 76 LNYGVACLNSPGTIDSDYRGEIKILLINLGQ-ENFLIMRGMRIAQLIIANSVRAHPSLIS 134 G++ +NSPGTID+ YRGEIK+ LINL ++ RG RIAQL++ +S Sbjct: 89 TRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVS 148 Query: 135 AMP---MGKNERNEKGFGSTGLY 154 + + R + G+GS+G + Sbjct: 149 SFDEAGLASTSRGDGGWGSSGGH 171 >2bsy_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; dutpase, monomer, nucleotide metabolism, structural proteomics in europe, spine; HET: UMP; 1.5A {Human herpesvirus 4} SCOP: b.85.4.1 b.85.4.1 PDB: 2bt1_A* 2we1_A* 2we0_A* 2we2_A* 2we3_A* Length = 278 Score = 102 bits (256), Expect = 3e-23 Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 8/103 (7%) Query: 20 PEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYG 79 + +S L L + L P + + G P G+ + + + Sbjct: 14 DKLLLQQASVGRL--TLVNKTTILLRPMKTTTVDLGLYARPPEGHGLMLWGSTSRPV--- 68 Query: 80 VACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLII 122 + G ID Y GE++++L N + N + L Sbjct: 69 ---TSHVGIIDPGYTGELRLILQNQRRYNSTLRPSELKIHLAA 108 Score = 99.3 bits (247), Expect = 3e-22 Identities = 30/167 (17%), Positives = 51/167 (30%), Gaps = 43/167 (25%) Query: 17 IPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLAL 76 I P+Y G G+D+ + + L P + P + + RSGLA+ Sbjct: 123 INHPQY--PGDVGLDVSL----PKDLALFPHQTVSVTLTVPPPSIPHHRPTIFGRSGLAM 176 Query: 77 NYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANS----------- 125 G+ RG + + L N + + + R QL+ + Sbjct: 177 Q-GILVKPCRW-----RRGGVDVSLTNFSDQTVFLNKYRRFCQLVYLHKHHLTSFYSPHS 230 Query: 126 --------------------VRAHPSLISAMPMGKNERNEKGFGSTG 152 V + S + R +GFGS+G Sbjct: 231 DAGVLGPRSLFRWASCTFEEVPSLAMGDSGLSEALEGRQGRGFGSSG 277 >1vyq_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; drug design, dutpase, deoxyuridine nucleotidohydrolase, malaria; HET: DUX; 2.4A {Plasmodium falciparum} SCOP: b.85.4.1 Length = 173 Score = 100 bits (249), Expect = 2e-22 Identities = 35/160 (21%), Positives = 56/160 (35%), Gaps = 32/160 (20%) Query: 18 PLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYI---IAIPPGYEGQ------- 67 + G SG+DLF + L P + + G + Y + Sbjct: 17 KNHKTHHEGDSGLDLFIV----KDEVLKPKSTTFVKLGIKAIALQYKSNYYYKCEKSENK 72 Query: 68 ---------------VRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIM 112 + RS ++ + NS G ID+ YRGEI L N + + I Sbjct: 73 KKDDDKSNIVNTSFLLFPRSSIS-KTPLRLANSIGLIDAGYRGEIIAALDNTSDQEYHIK 131 Query: 113 RGMRIAQLIIANSVRAHPSLISAMPMGKNERNEKGFGSTG 152 + ++ QL+ L+ + + R E GFGST Sbjct: 132 KNDKLVQLVSFTGEPLSFELVEELD--ETSRGEGGFGSTS 169 >2baz_A YOSS, hypothetical protein BSU20020; homotrimer, beta barrel, unknown function; 2.30A {Bacillus subtilis} Length = 142 Score = 94.4 bits (234), Expect = 9e-21 Identities = 43/136 (31%), Positives = 56/136 (41%), Gaps = 8/136 (5%) Query: 18 PLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALN 77 K +DL AA E V + L+P G + +P GYE V RS N Sbjct: 12 QTRINKMEQGDWIDLRAA----EDVAIKKDEFKLVPLGVAMELPEGYEAHVVPRSSTYKN 67 Query: 78 YGVACLNSPGTIDSDYRGEIKILLINL-GQENFLIMRGMRIAQLIIANSVRAHPSLISAM 136 +GV NS G ID Y+G+ + I +G RI Q I + A LI Sbjct: 68 FGVIQTNSMGVIDESYKGDNDFWFFPAYALRDTKIKKGDRICQFRIMKKMPA-VDLIEVD 126 Query: 137 PMGKNERNEKGFGSTG 152 +G +R G GSTG Sbjct: 127 RLGNGDRG--GHGSTG 140 >1dun_A Deoxyuridine 5'-triphosphate nucleoditohydrolase; dutpase, EIAV, trimeric enzyme, aspartyl protease; 1.90A {Equine infectious anemia virus} SCOP: b.85.4.1 PDB: 1duc_A Length = 134 Score = 94.0 bits (233), Expect = 1e-20 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 9/135 (6%) Query: 20 PEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYG 79 + K +G DL + + +IP I +PP G V +S Sbjct: 9 IKEKRDEDAGFDLCVP----YDIMIPVSDTKIIPTDVKIQVPPNSFGWVTGKSS---MAK 61 Query: 80 VACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSLISAMPMG 139 L + G ID Y GEI+++ N+G+ N ++ G + AQLII Sbjct: 62 QGLLINGGIIDEGYTGEIQVICTNIGKSNIKLIEGQKFAQLIILQHHSNSRQPWDENK-- 119 Query: 140 KNERNEKGFGSTGLY 154 ++R +KGFGSTG++ Sbjct: 120 ISQRGDKGFGSTGVF 134 >3ca9_A Deoxyuridine triphosphatase; dutpase chlorella virus, hydrolase; HET: DUD; 3.00A {Paramecium bursaria chlorella VIRUSIL3A} Length = 165 Score = 93.7 bits (232), Expect = 1e-20 Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 12/154 (7%) Query: 1 MQSIDIPFLQLPHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAI 60 M S+ + L P + G++G D+ + E V + R + G I + Sbjct: 17 MSSLLVKKL----VESATTPMRGSEGAAGYDISSV----EDVVVPAMGRIAVSTGISIRV 68 Query: 61 PPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQL 120 P G G++ RSGLA YG+ L ID DY GE+K++L N + +++I +G RIAQL Sbjct: 69 PDGTYGRIAPRSGLAYKYGIDVLAG--VIDEDYTGEVKVILYNTTERDYIIKKGDRIAQL 126 Query: 121 IIANSVRAHPSLISAMPMGKNERNEKGFGSTGLY 154 I+ V +++ + R GFGSTG+ Sbjct: 127 ILEQIVTPGVAVVLDLS--DTARGSGGFGSTGIL 158 >2d4n_A DU; jelly roll, hydrolase; HET: UPR; 1.53A {Mason-pfizer monkey virus} PDB: 2d4m_A 2d4l_A* Length = 152 Score = 90.1 bits (223), Expect = 2e-19 Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 13/140 (9%) Query: 15 HGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGL 74 I T GS+G+DL + + G + G +PP G + RS + Sbjct: 26 QPISKLTRATPGSAGLDLCST--SHTVLTPEMG-PQALSTGIYGPLPPNTFGLILGRSSI 82 Query: 75 ALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSLIS 134 + PG ID+DY GEIKI + + +G RIAQLI+ + + Sbjct: 83 TMKG---LQVYPGVIDNDYTGEIKI-MAKAVNNIVTVSQGNRIAQLILLPLIETDNKV-- 136 Query: 135 AMPMGKNERNEKGFGSTGLY 154 + R + FGS+ +Y Sbjct: 137 ----QQPYRGQGSFGSSDIY 152 >2ol1_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; fold, jelly-roll, superfamily, dutpase-like; HET: UMP; 1.80A {Vaccinia virus} PDB: 2oke_A* 2okd_A* 2ol0_A* 2okb_A Length = 147 Score = 90.2 bits (223), Expect = 2e-19 Identities = 50/151 (33%), Positives = 75/151 (49%), Gaps = 9/151 (5%) Query: 3 SIDIPFLQLPHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPP 62 +I+ P + + P ++ G++G DL++A + PG R LI +++P Sbjct: 5 NINSPVRFVKETNRAKSPTRQSPGAAGYDLYSA----YDYTIPPGERQLIKTDISMSMPK 60 Query: 63 GYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLII 122 G++ RSGL+L G ID DYRG I ++LIN G+ F + G RIAQLI Sbjct: 61 FCYGRIAPRSGLSLKG---IDIGGGVIDEDYRGNIGVILINNGKCTFNVNTGDRIAQLIY 117 Query: 123 ANSVRAHPSLISAMPMGKNERNEKGFGSTGL 153 +P L + R ++GFGSTGL Sbjct: 118 QRIY--YPELEEVQSLDSTNRGDQGFGSTGL 146 >3ecy_A CG4584-PA, isoform A (bcDNA.LD08534); jelly-roll, dimeric assembly, hydrolase; 1.88A {Drosophila melanogaster} Length = 160 Score = 89.8 bits (222), Expect = 2e-19 Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 12/154 (7%) Query: 1 MQSIDIPFLQL-PHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIA 59 + + + F +L +A P ++ ++G+DL +A V + ++++ + Sbjct: 17 IDTCVLRFAKLTENA---LEPVRGSAKAAGVDLRSA----YDVVVPARGKAIVKTDLQVQ 69 Query: 60 IPPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQ 119 +P G G+V RSGLA+ G +D DYRG + ++L N +F + G RIAQ Sbjct: 70 VPEGSYGRVAPRSGLAVKNF--IDVGAGVVDEDYRGNLGVVLFNHSDVDFEVKHGDRIAQ 127 Query: 120 LIIANSVRAHPSLISAMPMGKNERNEKGFGSTGL 153 I ++ + ER E GFGSTG+ Sbjct: 128 FICERIFYPQLVMVDKLE--DTERGEAGFGSTGV 159 >3c2t_A Deoxyuridine triphosphatase; dutpase chlorella virus, hydrolase; HET: DUD; 3.00A {Paramecium bursaria chlorella VIRUSIL3A} PDB: 3c3i_A* Length = 141 Score = 89.5 bits (221), Expect = 3e-19 Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 12/153 (7%) Query: 1 MQSIDIPFLQLPHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAI 60 M S+ + L P + G++G D+ + E V + R + G I + Sbjct: 1 MSSLLVKKL----VESATTPMRGSEGAAGYDISSV----EDVVVPAMGRIAVSTGISIRV 52 Query: 61 PPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQL 120 P G G++ RSGLA YG+ G ID DY GE+K++L N + +++I +G RIAQL Sbjct: 53 PDGTYGRIAPRSGLAYKYGID--VLAGVIDEDYTGEVKVILYNTTERDYIIKKGDRIAQL 110 Query: 121 IIANSVRAHPSLISAMPMGKNERNEKGFGSTGL 153 I+ V +++ + R GFGSTG+ Sbjct: 111 ILEQIVTPGVAVVLDLS--DTARGSGGFGSTGI 141 >3f4f_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; trimer, beta barrel, UMP, product complex, DUTP pyrophosphatase, DITP; HET: UMP; 2.00A {Saccharomyces cerevisiae} PDB: 3hhq_A Length = 167 Score = 89.1 bits (220), Expect = 4e-19 Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 7/137 (5%) Query: 16 GIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLA 75 +P ++ ++G D++A+ + + + + ++ +P G G++ RSGLA Sbjct: 37 SATVPTKGSATAAGYDIYAS----QDITIPAMGQGMVSTDISFTVPVGTYGRIAPRSGLA 92 Query: 76 LNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSLISA 135 + G G +D DY GE+K++L N Q +F I +G R+AQLI+ V ++ Sbjct: 93 VKNG--IQTGAGVVDRDYTGEVKVVLFNHSQRDFAIKKGDRVAQLILEKIVD-DAQIVVV 149 Query: 136 MPMGKNERNEKGFGSTG 152 + ++ R GFGSTG Sbjct: 150 DSLEESARGAGGFGSTG 166 >3ehw_A DUTP pyrophosphatase; jelly-roll, FULL-length C-terminal ARM, enzyme-ligand complex, hydrolase; HET: DUP; 1.80A {Homo sapiens} SCOP: b.85.4.1 PDB: 2hqu_A* 1q5h_A* 1q5u_X Length = 164 Score = 86.8 bits (214), Expect = 2e-18 Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 12/153 (7%) Query: 1 MQSIDIPFLQL-PHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIA 59 + + + F +L HA P ++ ++G DL++A + P ++++ IA Sbjct: 21 VGGMQLRFARLSEHA---TAPTRGSARAAGYDLYSA----YDYTIPPMEKAVVKTDIQIA 73 Query: 60 IPPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQ 119 +P G G+V RSGLA + + G ID DYRG + ++L N G+E F + +G RIAQ Sbjct: 74 LPSGCYGRVAPRSGLAAKHFIDV--GAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQ 131 Query: 120 LIIANSVRAHPSLISAMPMGKNERNEKGFGSTG 152 LI + A+ ER GFGSTG Sbjct: 132 LICERIFYPEIEEVQALD--DTERGSGGFGSTG 162 >2p9o_A DUTP pyrophosphatase-like protein; dutpase, magnesium binding, hydrolase; 2.00A {Arabidopsis thaliana} PDB: 2pc5_A Length = 169 Score = 81.8 bits (201), Expect = 6e-17 Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 15/157 (9%) Query: 1 MQSIDIPFLQL----PHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGY 56 S PF ++ A +P + S+G DL +A ++ ++LIP Sbjct: 24 GDSSPSPFFKVKKLSEKA---VIPTRGSPLSAGYDLSSA----VDSKVPARGKALIPTDL 76 Query: 57 IIAIPPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMR 116 IA+P G ++ RSGLA + + G ID+DYRG + ++L N +F + G R Sbjct: 77 SIAVPEGTYARIAPRSGLAWKHSIDV--GAGVIDADYRGPVGVILFNHSDADFEVKFGDR 134 Query: 117 IAQLIIANSVRAHPSLISAMPMGKNERNEKGFGSTGL 153 IAQLII V P ++ + + R + GFGSTG+ Sbjct: 135 IAQLIIEKIV--TPDVVEVDDLDETVRGDGGFGSTGV 169 >2qxx_A DCTP deaminase, deoxycytidine triphosphate deaminase; distorted beta barrel, hydrolase, nucleotide metabolism; HET: TTP 1PE; 2.00A {Mycobacterium tuberculosis H37RV} PDB: 2qlp_A* Length = 190 Score = 55.6 bits (133), Expect = 4e-09 Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 6/116 (5%) Query: 38 EDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEI 97 + EP L PG L + +P G++ +S L + ++ G ID + G I Sbjct: 68 DGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTH-STAGFIDPGFSGHI 126 Query: 98 KILLINLGQENFLIMRGMRIAQLIIANSVRAHPSLISAMPMGKNERNEKGFGSTGL 153 + L N+ + GM+I QL + + S P G + K G G Sbjct: 127 TLELSNVANLPITLWPGMKIGQLCMLRL-----TSPSEHPYGSSRAGSKYQGQRGP 177 >2yzj_A 167AA long hypothetical dutpase; all beta proteins, hypothetical protein, NPPSFA; HET: DUD; 1.66A {Sulfolobus tokodaii} PDB: 2zdc_A Length = 169 Score = 53.5 bits (128), Expect = 2e-08 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 5/88 (5%) Query: 36 LPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRG 95 + E L L +P + +S LA L P ID+ Y+G Sbjct: 67 IEFKERAILSANHTYLFESCEEFNMPADLAVLITLKSTLA---RNGFLAPPTVIDAGYKG 123 Query: 96 EIKILLINLGQENFLIMRGMRIAQLIIA 123 ++ + + + N + +GM LI Sbjct: 124 KVNVAITAV--YNSSLKKGMATHHLIFL 149 >1xs1_A DCTP deaminase, deoxycytidine triphosphate deaminase; nucleotide metabolism, trimer, hydrolase; HET: DUT; 1.80A {Escherichia coli} SCOP: b.85.4.1 PDB: 2v9x_A* 1xs6_A* 1xs4_A* 2j4q_A* 2j4h_A* Length = 193 Score = 48.6 bits (115), Expect = 5e-07 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 1/86 (1%) Query: 36 LPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRG 95 L E E L PG +L + +P G + RS LA G+ + ID + G Sbjct: 75 LDEGEAFYLHPGELALAVTLESVTLPADLVGWLDGRSSLA-RLGLMVHVTAHRIDPGWSG 133 Query: 96 EIKILLINLGQENFLIMRGMRIAQLI 121 I + N G+ + GM I L Sbjct: 134 CIVLEFYNSGKLPLALRPGMLIGALS 159 >2r9q_A AGR_C_764P, 2'-deoxycytidine 5'-triphosphate deaminase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.20A {Agrobacterium tumefaciens str} Length = 370 Score = 48.0 bits (114), Expect = 8e-07 Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 4/89 (4%) Query: 37 PEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYGV--ACLNSPG--TIDSD 92 + L P ++ + +PP Y ++ L + V A PG + Sbjct: 248 RGRAELILDPDEFYILVSREAVHVPPLYAAEMTPFDPLVGEFRVHYAGFFDPGFGHAQAG 307 Query: 93 YRGEIKILLINLGQENFLIMRGMRIAQLI 121 G +L + + F++ G + +L+ Sbjct: 308 GTGSRAVLEVRSHEVPFILEHGQIVGRLV 336 >1pkh_A Bifunctional deaminase/diphosphatase; DCTP deaminase, dutpase, DCD-DUT, MJ0430, DCTP, DUTP, hydrolase; 1.42A {Methanocaldococcus jannaschii} SCOP: b.85.4.1 PDB: 1ogh_A 1pkj_A* 1pkk_A* 2hxb_A 2hxe_A 3gf0_A 2hxd_A* Length = 204 Score = 48.1 bits (114), Expect = 9e-07 Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 2/91 (2%) Query: 31 DLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYGVACLNSPGTID 90 + E V+ + L I +P Q + RS L + + G ID Sbjct: 77 EKINYFKEKYNVDYVVEGGVLGTTNEYIELPNDISAQYQGRSSLG-RVFLTSHQTAGWID 135 Query: 91 SDYRGEIKILLINLGQENFLIMRGMRIAQLI 121 + ++G+I + ++ + ++ + RI QLI Sbjct: 136 AGFKGKITLEIVAFDK-PVILYKNQRIGQLI 165 >3km3_A DCTP deaminase, deoxycytidine triphosphate deaminase; ssgcid, NIH, niaid, SBRI, UW, decode, iodide phasing, hydrolase; 2.10A {Anaplasma phagocytophilum HZ} Length = 206 Score = 36.2 bits (83), Expect = 0.004 Identities = 7/64 (10%), Positives = 17/64 (26%), Gaps = 3/64 (4%) Query: 58 IAIPPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRI 117 IP +S A + + ++ + G + + N + Sbjct: 115 FNIPRDVMVVCVGKSTYA---RCGIVVNVTPLEPGWSGYVTLEFSNTSPLPVKVYAFEGA 171 Query: 118 AQLI 121 Q + Sbjct: 172 CQFL 175 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 28.0 bits (62), Expect = 0.90 Identities = 24/154 (15%), Positives = 39/154 (25%), Gaps = 63/154 (40%) Query: 2 QSIDIPFLQLPHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIP 61 ++ + IP+ Y T G DL L + ++ I Sbjct: 446 NNVSFNAKDI----QIPV--YDTF--DGSDL-RVLSGS----ISE---RIV---DCIIRL 486 Query: 62 PGYEGQVRSRSGLALNYGVACLNSPGT--IDSDYRGEIKILLINLGQENFLIMR-----G 114 P + + T +D G LG L R G Sbjct: 487 P-------------VKWETT-TQFKATHILDFG-PGGAS----GLGV---LTHRNKDGTG 524 Query: 115 MRIAQLIIANSVRAHPSLISAMPMGKNERNEKGF 148 +R+ I A + N ++ GF Sbjct: 525 VRV---------------IVAGTLDINPDDDYGF 543 Score = 26.1 bits (57), Expect = 3.6 Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 31/108 (28%) Query: 29 GMDLFAALPEDEPVELLPGMRSLIPG-----------GYIIAIPPGYEGQVRSRSGL--- 74 GM + A+P DE GM ++ PG Y++ +V R+G Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE-------RVGKRTGWLVE 1842 Query: 75 ALNYGVACLNSPGTIDSDY--RGEIKILLINLGQENFLIMRGMRIAQL 120 +NY V + Y G+++ L NF+ ++ + I +L Sbjct: 1843 IVNYNVE--------NQQYVAAGDLRALDTVTNVLNFIKLQKIDIIEL 1882 >1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1 Length = 219 Score = 25.9 bits (56), Expect = 3.9 Identities = 10/28 (35%), Positives = 15/28 (53%) Query: 102 INLGQENFLIMRGMRIAQLIIANSVRAH 129 ++LG EN M+I L + +VR H Sbjct: 11 VDLGTENLYFQSNMKIGVLGLQGAVREH 38 >3i6p_A Ethanolamine utilization protein EUTM; structural protein; 2.10A {Escherichia coli} Length = 105 Score = 25.0 bits (55), Expect = 6.7 Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 3/33 (9%) Query: 114 GMRIAQLIIANSVRAHPSLISAMPMGKNERNEK 146 G ++ +I R H L P+G + Sbjct: 67 GELVSVHVIP---RPHGDLEEVFPIGLKGDSSN 96 >1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 163 Score = 24.8 bits (54), Expect = 7.5 Identities = 12/20 (60%), Positives = 15/20 (75%) Query: 24 TSGSSGMDLFAALPEDEPVE 43 +SGSSGM LF A P ++ VE Sbjct: 2 SSGSSGMPLFTANPFEQDVE 21 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.319 0.141 0.412 Gapped Lambda K H 0.267 0.0600 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,364,956 Number of extensions: 62181 Number of successful extensions: 226 Number of sequences better than 10.0: 1 Number of HSP's gapped: 177 Number of HSP's successfully gapped: 35 Length of query: 154 Length of database: 5,693,230 Length adjustment: 84 Effective length of query: 70 Effective length of database: 3,656,734 Effective search space: 255971380 Effective search space used: 255971380 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 52 (24.1 bits)