HHsearch alignment for GI: 254781026 and conserved domain: CHL00095

>CHL00095 clpC Clp protease ATP binding subunit.
Probab=99.63  E-value=2.6e-15  Score=110.60  Aligned_cols=166  Identities=17%  Similarity=0.127  Sum_probs=104.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf             97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA   80 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA   80 (186)
T Consensus       544 f~GPTGvGKTElAK~LA~~LFg-------------~e~~liR~DMSEy~E~hsvsrLIGaPPGYVGy~eGG~LTeaVrr~  610 (823)
T CHL00095        544 FCGPTGVGKTELTKALASYFFG-------------SEEAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKK  610 (823)
T ss_pred             EECCCCCCHHHHHHHHHHHHCC-------------CCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHCC
T ss_conf             8789988779999999999747-------------820258853510155420767458998766778788201988719


Q ss_pred             CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCC------C---CCCCCCCCCCC--CC
Q ss_conf             9988998038785988999999999719523010030789847015675227465------8---87889887643--89
Q gi|254781026|r   81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCR------C---GMSNKDENVCI--RG  149 (186)
Q Consensus        81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcp------c---G~~~~~~~~c~--c~  149 (186)
T Consensus       611 PysVvLfDEIEKAHpdV~nilLQvlDdG~LtD~~Gr~vdF~--NtIIImTSNlGs~~i~~~~~~~gf~~~~~~~~~~~~~  688 (823)
T CHL00095        611 PYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFK--NTLIIMTSNLGSKVIEKGGGSLGFKLLEDGTKLDEKQ  688 (823)
T ss_pred             CCEEEEECHHHHCCHHHHHHHHHHCCCCCCCCCCCCEEECE--EEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCHHH
T ss_conf             98699862131138899998876516884348999988431--0399971650558887413443433344543220235


Q ss_pred             H----HHHHH-HHHHCCHHHHHCCCEEEECCCCCHHH
Q ss_conf             9----99999-98512243210042599838856688
Q gi|254781026|r  150 P----RCATE-YQARISGPLMDRIDIRIAVPSRTHIR  181 (186)
Q Consensus       150 ~----~~~~~-Y~~rls~plldR~Dl~v~~~~~~~~~  181 (186)
T Consensus       689 ~~~~~~~v~~~l~~~F~PEFlnRiDeii~F~~L~~~~  725 (823)
T CHL00095        689 YKRLSNLVNEELKQYFRPEFLNRLDEIIVFRPLTKDE  725 (823)
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHCCEEEEECCCCHHH
T ss_conf             8999999999998437987873278278618999999