HHsearch alignment for GI: 254781026 and conserved domain: CHL00095
>CHL00095 clpC Clp protease ATP binding subunit.
Probab=99.63 E-value=2.6e-15 Score=110.60 Aligned_cols=166 Identities=17% Similarity=0.127 Sum_probs=104.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
T Consensus 544 f~GPTGvGKTElAK~LA~~LFg-------------~e~~liR~DMSEy~E~hsvsrLIGaPPGYVGy~eGG~LTeaVrr~ 610 (823)
T CHL00095 544 FCGPTGVGKTELTKALASYFFG-------------SEEAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKK 610 (823)
T ss_pred EECCCCCCHHHHHHHHHHHHCC-------------CCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHCC
T ss_conf 8789988779999999999747-------------820258853510155420767458998766778788201988719
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCC------C---CCCCCCCCCCC--CC
Q ss_conf 9988998038785988999999999719523010030789847015675227465------8---87889887643--89
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCR------C---GMSNKDENVCI--RG 149 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcp------c---G~~~~~~~~c~--c~ 149 (186)
T Consensus 611 PysVvLfDEIEKAHpdV~nilLQvlDdG~LtD~~Gr~vdF~--NtIIImTSNlGs~~i~~~~~~~gf~~~~~~~~~~~~~ 688 (823)
T CHL00095 611 PYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFK--NTLIIMTSNLGSKVIEKGGGSLGFKLLEDGTKLDEKQ 688 (823)
T ss_pred CCEEEEECHHHHCCHHHHHHHHHHCCCCCCCCCCCCEEECE--EEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCHHH
T ss_conf 98699862131138899998876516884348999988431--0399971650558887413443433344543220235
Q ss_pred H----HHHHH-HHHHCCHHHHHCCCEEEECCCCCHHH
Q ss_conf 9----99999-98512243210042599838856688
Q gi|254781026|r 150 P----RCATE-YQARISGPLMDRIDIRIAVPSRTHIR 181 (186)
Q Consensus 150 ~----~~~~~-Y~~rls~plldR~Dl~v~~~~~~~~~ 181 (186)
T Consensus 689 ~~~~~~~v~~~l~~~F~PEFlnRiDeii~F~~L~~~~ 725 (823)
T CHL00095 689 YKRLSNLVNEELKQYFRPEFLNRLDEIIVFRPLTKDE 725 (823)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHCCEEEEECCCCHHH
T ss_conf 8999999999998437987873278278618999999