HHsearch alignment for GI: 254781026 and conserved domain: CHL00095
>CHL00095 clpC Clp protease ATP binding subunit.
Probab=98.27 E-value=8.3e-07 Score=60.71 Aligned_cols=123 Identities=24% Similarity=0.334 Sum_probs=73.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCC-C--------
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434-5--------
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGL-Q-------- 71 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~-~-------- 71 (186)
T Consensus 205 LvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLD-----------------------l~~L~AGtkyRGeFEeRlk 261 (823)
T CHL00095 205 LIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLD-----------------------IGLLLAGTKYRGEFEERIK 261 (823)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEE-----------------------HHHHHHCCCCCHHHHHHHH
T ss_conf 23799987999999999976088998687599368842-----------------------8877533422267999999
Q ss_pred CCHHHHHHCCCCEEEEECHHHC--------CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCC
Q ss_conf 6827998279988998038785--------98899999999971952301003078984701567522746588788988
Q gi|254781026|r 72 VLPGEDSLAHNGVLFLDEIPEF--------SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDE 143 (186)
Q Consensus 72 ~~pG~i~lAh~GVLflDE~~e~--------~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~ 143 (186)
T Consensus 262 ~il~ei~~~~~iILFIDEiHtlvGaG~~~g~~DaaNlLKPaLarGel---------------~~IGATT~~E-------- 318 (823)
T CHL00095 262 KIMDEIKKANNIILVIDEIHTLIGAGAAEGAIDAANILKPALARGKL---------------QCIGATTLEE-------- 318 (823)
T ss_pred HHHHHHHHCCCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHCCCC---------------EEEEECCHHH--------
T ss_conf 99999985798699973516532889766643178876578648986---------------6997078899--------
Q ss_pred CCCCCCHHHHHHHHHHCCHHHHHCCCE-EEECCCCCH
Q ss_conf 764389999999985122432100425-998388566
Q gi|254781026|r 144 NVCIRGPRCATEYQARISGPLMDRIDI-RIAVPSRTH 179 (186)
Q Consensus 144 ~~c~c~~~~~~~Y~~rls~plldR~Dl-~v~~~~~~~ 179 (186)
T Consensus 319 ---------Yrk~iEk-D~AL~RRFq~V~V~EPs~e~ 345 (823)
T CHL00095 319 ---------YRKHIEK-DPALERRFQPVYVGEPSVEE 345 (823)
T ss_pred ---------HHHHHHC-CHHHHHHCCCCCCCCCCHHH
T ss_conf ---------9998530-58899626841028998799