HHsearch alignment for GI: 254781026 and conserved domain: CHL00195
>CHL00195 ycf46 Ycf46; Provisional.
Probab=98.88 E-value=6.1e-09 Score=73.23 Aligned_cols=112 Identities=18% Similarity=0.214 Sum_probs=64.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHH--HH
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434568279--98
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGE--DS 78 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~--i~ 78 (186)
T Consensus 264 L~GpPG~GKtl~AKAvA~e~~-----------------------~------p~l~l~~~~l~~~~vGesE~~~r~~f~~A 314 (491)
T CHL00195 264 LVGIQGTGKSLTAKAIANEWN-----------------------L------PLLRLDVGKLFGGIVGESESRMRQMIQLA 314 (491)
T ss_pred EECCCCCCHHHHHHHHHHHHC-----------------------C------CEEEEEHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 979999878999999986638-----------------------9------46996679975600670499999999999
Q ss_pred HC-CCCEEEEECHHHC------------CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 27-9988998038785------------9889999999997195230100307898470156752274658878898876
Q gi|254781026|r 79 LA-HNGVLFLDEIPEF------------SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENV 145 (186)
Q Consensus 79 lA-h~GVLflDE~~e~------------~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~ 145 (186)
T Consensus 315 ~~~aP~ilfiDEidk~~~~~~~~~d~g~s~rv~~~~Lt~m~e~~-------------~~VfViattN~~~---------- 371 (491)
T CHL00195 315 ETISPCILWIDEIDKAFSGLDSKGDSGTSNRVLATFITWLSEKK-------------SPVFVVATANNID---------- 371 (491)
T ss_pred HHHCCEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCC-------------CCEEEEEECCCCC----------
T ss_conf 86198589974654542588888887232899999999864689-------------9769999589975----------
Q ss_pred CCCCHHHHHHHHHHCCHHHHH--CCCEEEECCCC
Q ss_conf 438999999998512243210--04259983885
Q gi|254781026|r 146 CIRGPRCATEYQARISGPLMD--RIDIRIAVPSR 177 (186)
Q Consensus 146 c~c~~~~~~~Y~~rls~plld--R~Dl~v~~~~~ 177 (186)
T Consensus 372 -------------~L~pellR~GRFD~~~~v~lP 392 (491)
T CHL00195 372 -------------SLPLELLRKGRFDEIFFLDLP 392 (491)
T ss_pred -------------CCCHHHCCCCCCCEEEECCCC
T ss_conf -------------589877089877704764895