HHsearch alignment for GI: 254781026 and conserved domain: COG0464
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones].
Probab=98.62 E-value=9.6e-08 Score=66.20 Aligned_cols=117 Identities=24% Similarity=0.247 Sum_probs=65.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCC-CCHHHCCCCCCCC-CHHHHH
Q ss_conf 97778605999999988748898978853230000002788875653111202037752-1001102343456-827998
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHS-VTIAALIGGGLQV-LPGEDS 78 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~-~~~~~l~gg~~~~-~pG~i~ 78 (186)
T Consensus 281 l~GpPGtGKT~lAkava~~~~-----------------------~------~fi~v~~~~l~sk~vGesek~ir~~F~~A 331 (494)
T COG0464 281 LYGPPGTGKTLLAKAVALESR-----------------------S------RFISVKGSELLSKWVGESEKNIRELFEKA 331 (494)
T ss_pred EECCCCCCHHHHHHHHHHHCC-----------------------C------CEEEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 988999758999999875449-----------------------8------24884335554077659999999999999
Q ss_pred -HCCCCEEEEECHHHCC-----------HHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf -2799889980387859-----------8899999999971952301003078984701567522746588788988764
Q gi|254781026|r 79 -LAHNGVLFLDEIPEFS-----------PQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVC 146 (186)
Q Consensus 79 -lAh~GVLflDE~~e~~-----------~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c 146 (186)
T Consensus 332 ~~~~p~iifiDEiDs~~~~r~~~~~~~~~rv~~~ll~~~d~~e~~-----------~~v~vi~aTN~p~~---------- 390 (494)
T COG0464 332 RKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKA-----------EGVLVIAATNRPDD---------- 390 (494)
T ss_pred HHCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCC-----------CCEEEEECCCCCCC----------
T ss_conf 966998897488666741289987637999999999997475443-----------76489964798332----------
Q ss_pred CCCHHHHHHHHHHCCHHHHH--CCCEEEECCCCCHH
Q ss_conf 38999999998512243210--04259983885668
Q gi|254781026|r 147 IRGPRCATEYQARISGPLMD--RIDIRIAVPSRTHI 180 (186)
Q Consensus 147 ~c~~~~~~~Y~~rls~plld--R~Dl~v~~~~~~~~ 180 (186)
T Consensus 391 -------------ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 391 -------------LDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred -------------CCHHHHCCCCCEEEEEECCCCHH
T ss_conf -------------68756243663037871798989