HHsearch alignment for GI: 254781026 and conserved domain: COG0465
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones].
Probab=97.99 E-value=1.8e-05 Score=52.91 Aligned_cols=113 Identities=28% Similarity=0.361 Sum_probs=62.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCC----HHH
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434568----279
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVL----PGE 76 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~----pG~ 76 (186)
T Consensus 188 LvGpPGTGKTLLAkAvAgEA~V-----------------------------PFf~iSGS~FVemfVGvGAsRVRdLF~qA 238 (596)
T COG0465 188 LVGPPGTGKTLLAKAVAGEAGV-----------------------------PFFSISGSDFVEMFVGVGASRVRDLFEQA 238 (596)
T ss_pred EECCCCCCCHHHHHHHHCCCCC-----------------------------CCEECCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 8559998727899998454689-----------------------------83530344464431478838889999985
Q ss_pred HHHCCCCEEEEECHHHCCH--------------HHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCC
Q ss_conf 9827998899803878598--------------89999999997195230100307898470156752274658878898
Q gi|254781026|r 77 DSLAHNGVLFLDEIPEFSP--------------QTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKD 142 (186)
Q Consensus 77 i~lAh~GVLflDE~~e~~~--------------~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~ 142 (186)
T Consensus 239 kk~aP-~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~-----------~~~gviviaaTNRp------d- 299 (596)
T COG0465 239 KKNAP-CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG-----------GNEGVIVIAATNRP------D- 299 (596)
T ss_pred HCCCC-CEEEEEHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-----------CCCCEEEECCCCCC------C-
T ss_conf 51599-66987634331454577889980699999988885201578-----------88754885267874------3-
Q ss_pred CCCCCCCHHHHHHHHHHCCHHHH--HCCCEEEECCCC
Q ss_conf 87643899999999851224321--004259983885
Q gi|254781026|r 143 ENVCIRGPRCATEYQARISGPLM--DRIDIRIAVPSR 177 (186)
Q Consensus 143 ~~~c~c~~~~~~~Y~~rls~pll--dR~Dl~v~~~~~ 177 (186)
T Consensus 300 V----------------lD~ALlRpgRFDRqI~V~~P 320 (596)
T COG0465 300 V----------------LDPALLRPGRFDRQILVELP 320 (596)
T ss_pred C----------------CHHHHCCCCCCCEEEECCCC
T ss_conf 3----------------31765288776625544785