HHsearch alignment for GI: 254781026 and conserved domain: COG0465

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones].
Probab=97.99  E-value=1.8e-05  Score=52.91  Aligned_cols=113  Identities=28%  Similarity=0.361  Sum_probs=62.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCC----HHH
Q ss_conf             9777860599999998874889897885323000000278887565311120203775210011023434568----279
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVL----PGE   76 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~----pG~   76 (186)
T Consensus       188 LvGpPGTGKTLLAkAvAgEA~V-----------------------------PFf~iSGS~FVemfVGvGAsRVRdLF~qA  238 (596)
T COG0465         188 LVGPPGTGKTLLAKAVAGEAGV-----------------------------PFFSISGSDFVEMFVGVGASRVRDLFEQA  238 (596)
T ss_pred             EECCCCCCCHHHHHHHHCCCCC-----------------------------CCEECCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             8559998727899998454689-----------------------------83530344464431478838889999985


Q ss_pred             HHHCCCCEEEEECHHHCCH--------------HHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCC
Q ss_conf             9827998899803878598--------------89999999997195230100307898470156752274658878898
Q gi|254781026|r   77 DSLAHNGVLFLDEIPEFSP--------------QTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKD  142 (186)
Q Consensus        77 i~lAh~GVLflDE~~e~~~--------------~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~  142 (186)
T Consensus       239 kk~aP-~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~-----------~~~gviviaaTNRp------d-  299 (596)
T COG0465         239 KKNAP-CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG-----------GNEGVIVIAATNRP------D-  299 (596)
T ss_pred             HCCCC-CEEEEEHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-----------CCCCEEEECCCCCC------C-
T ss_conf             51599-66987634331454577889980699999988885201578-----------88754885267874------3-


Q ss_pred             CCCCCCCHHHHHHHHHHCCHHHH--HCCCEEEECCCC
Q ss_conf             87643899999999851224321--004259983885
Q gi|254781026|r  143 ENVCIRGPRCATEYQARISGPLM--DRIDIRIAVPSR  177 (186)
Q Consensus       143 ~~~c~c~~~~~~~Y~~rls~pll--dR~Dl~v~~~~~  177 (186)
T Consensus       300 V----------------lD~ALlRpgRFDRqI~V~~P  320 (596)
T COG0465         300 V----------------LDPALLRPGRFDRQILVELP  320 (596)
T ss_pred             C----------------CHHHHCCCCCCCEEEECCCC
T ss_conf             3----------------31765288776625544785