HHsearch alignment for GI: 254781026 and conserved domain: COG0466
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].
Probab=98.79 E-value=1.2e-08 Score=71.49 Aligned_cols=131 Identities=24% Similarity=0.364 Sum_probs=74.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHH-
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434568279982-
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSL- 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~l- 79 (186)
T Consensus 355 LVGPPGVGKTSLgkSIA~al~R---------kfvR~sLGGvrDEAEIRGHRR-----------TYI----GaMPGrIiQ~ 410 (782)
T COG0466 355 LVGPPGVGKTSLGKSIAKALGR---------KFVRISLGGVRDEAEIRGHRR-----------TYI----GAMPGKIIQG 410 (782)
T ss_pred EECCCCCCCHHHHHHHHHHHCC---------CEEEEECCCCCCHHHHCCCCC-----------CCC----CCCCHHHHHH
T ss_conf 9789988701189999999589---------779995476542777535531-----------233----5687289999
Q ss_pred -----CCCCEEEEECHHHCCHHH----HHHHHHHHHCCCEEE---HHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf -----799889980387859889----999999997195230---10030789847015675227465887889887643
Q gi|254781026|r 80 -----AHNGVLFLDEIPEFSPQT----LNALRQPLETGECII---ARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCI 147 (186)
Q Consensus 80 -----Ah~GVLflDE~~e~~~~~----l~~L~~~le~g~v~i---~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~ 147 (186)
T Consensus 411 mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL-S~VmFiaTANsl------------- 476 (782)
T COG0466 411 MKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL-SKVMFIATANSL------------- 476 (782)
T ss_pred HHHHCCCCCEEEEECHHHCCCCCCCCHHHHHHHHCCHHHCCCHHHCCCCCCCCH-HHEEEEEECCCC-------------
T ss_conf 998677687478640333167777886888886269765676122201676644-325888603751-------------
Q ss_pred CCHHHHHHHHHHCCHHHHHCCCEEEECCCCCHH
Q ss_conf 899999999851224321004259983885668
Q gi|254781026|r 148 RGPRCATEYQARISGPLMDRIDIRIAVPSRTHI 180 (186)
Q Consensus 148 c~~~~~~~Y~~rls~plldR~Dl~v~~~~~~~~ 180 (186)
T Consensus 477 ----------~tIP~PLlDRMEiI-~lsgYt~~ 498 (782)
T COG0466 477 ----------DTIPAPLLDRMEVI-RLSGYTED 498 (782)
T ss_pred ----------CCCCHHHHCCEEEE-EECCCCHH
T ss_conf ----------32986784303056-42688869