HHsearch alignment for GI: 254781026 and conserved domain: COG0466

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].
Probab=98.79  E-value=1.2e-08  Score=71.49  Aligned_cols=131  Identities=24%  Similarity=0.364  Sum_probs=74.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHH-
Q ss_conf             9777860599999998874889897885323000000278887565311120203775210011023434568279982-
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSL-   79 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~l-   79 (186)
T Consensus       355 LVGPPGVGKTSLgkSIA~al~R---------kfvR~sLGGvrDEAEIRGHRR-----------TYI----GaMPGrIiQ~  410 (782)
T COG0466         355 LVGPPGVGKTSLGKSIAKALGR---------KFVRISLGGVRDEAEIRGHRR-----------TYI----GAMPGKIIQG  410 (782)
T ss_pred             EECCCCCCCHHHHHHHHHHHCC---------CEEEEECCCCCCHHHHCCCCC-----------CCC----CCCCHHHHHH
T ss_conf             9789988701189999999589---------779995476542777535531-----------233----5687289999


Q ss_pred             -----CCCCEEEEECHHHCCHHH----HHHHHHHHHCCCEEE---HHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             -----799889980387859889----999999997195230---10030789847015675227465887889887643
Q gi|254781026|r   80 -----AHNGVLFLDEIPEFSPQT----LNALRQPLETGECII---ARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCI  147 (186)
Q Consensus        80 -----Ah~GVLflDE~~e~~~~~----l~~L~~~le~g~v~i---~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~  147 (186)
T Consensus       411 mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL-S~VmFiaTANsl-------------  476 (782)
T COG0466         411 MKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL-SKVMFIATANSL-------------  476 (782)
T ss_pred             HHHHCCCCCEEEEECHHHCCCCCCCCHHHHHHHHCCHHHCCCHHHCCCCCCCCH-HHEEEEEECCCC-------------
T ss_conf             998677687478640333167777886888886269765676122201676644-325888603751-------------


Q ss_pred             CCHHHHHHHHHHCCHHHHHCCCEEEECCCCCHH
Q ss_conf             899999999851224321004259983885668
Q gi|254781026|r  148 RGPRCATEYQARISGPLMDRIDIRIAVPSRTHI  180 (186)
Q Consensus       148 c~~~~~~~Y~~rls~plldR~Dl~v~~~~~~~~  180 (186)
T Consensus       477 ----------~tIP~PLlDRMEiI-~lsgYt~~  498 (782)
T COG0466         477 ----------DTIPAPLLDRMEVI-RLSGYTED  498 (782)
T ss_pred             ----------CCCCHHHHCCEEEE-EECCCCHH
T ss_conf             ----------32986784303056-42688869