HHsearch alignment for GI: 254781026 and conserved domain: COG0542

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=99.61  E-value=3e-15  Score=110.28  Aligned_cols=164  Identities=18%  Similarity=0.115  Sum_probs=102.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf             97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA   80 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA   80 (186)
T Consensus       526 F~GPTGVGKTELAkaLA~~Lfg~e-------------~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~  592 (786)
T COG0542         526 FLGPTGVGKTELAKALAEALFGDE-------------QALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRK  592 (786)
T ss_pred             EECCCCCCHHHHHHHHHHHHCCCC-------------CCCEEECHHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHCC
T ss_conf             667886569999999999965997-------------4445545687777877998727999872006554003766069


Q ss_pred             CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCC----C-CCCCHHHHHH
Q ss_conf             9988998038785988999999999719523010030789847015675227465887889887----6-4389999999
Q gi|254781026|r   81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDEN----V-CIRGPRCATE  155 (186)
Q Consensus        81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~----~-c~c~~~~~~~  155 (186)
T Consensus       593 PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFr--NtiIImTSN~Gs-~~i~~~~~~~~~~~~~~~~~~v~~  669 (786)
T COG0542         593 PYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFR--NTIIIMTSNAGS-EEILRDADGDDFADKEALKEAVME  669 (786)
T ss_pred             CCEEEEECHHHHCCHHHHHHHHHHHCCCCEECCCCCEEECC--EEEEEEECCCCH-HHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             98688841264408899999999846780554899888430--028998450265-989753134321004678899999


Q ss_pred             HHHH-CCHHHHHCCCEEEECCCCCHH
Q ss_conf             9851-224321004259983885668
Q gi|254781026|r  156 YQAR-ISGPLMDRIDIRIAVPSRTHI  180 (186)
Q Consensus       156 Y~~r-ls~plldR~Dl~v~~~~~~~~  180 (186)
T Consensus       670 ~l~~~F~PEFLNRid~II~F~~L~~~  695 (786)
T COG0542         670 ELKKHFRPEFLNRIDEIIPFNPLSKE  695 (786)
T ss_pred             HHHHHCCHHHHHHCCCEEECCCCCHH
T ss_conf             99853899898512617850679989