HHsearch alignment for GI: 254781026 and conserved domain: COG0542
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=99.61 E-value=3e-15 Score=110.28 Aligned_cols=164 Identities=18% Similarity=0.115 Sum_probs=102.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
T Consensus 526 F~GPTGVGKTELAkaLA~~Lfg~e-------------~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~ 592 (786)
T COG0542 526 FLGPTGVGKTELAKALAEALFGDE-------------QALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRK 592 (786)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCC-------------CCCEEECHHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHCC
T ss_conf 667886569999999999965997-------------4445545687777877998727999872006554003766069
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCC----C-CCCCHHHHHH
Q ss_conf 9988998038785988999999999719523010030789847015675227465887889887----6-4389999999
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDEN----V-CIRGPRCATE 155 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~----~-c~c~~~~~~~ 155 (186)
T Consensus 593 PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFr--NtiIImTSN~Gs-~~i~~~~~~~~~~~~~~~~~~v~~ 669 (786)
T COG0542 593 PYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFR--NTIIIMTSNAGS-EEILRDADGDDFADKEALKEAVME 669 (786)
T ss_pred CCEEEEECHHHHCCHHHHHHHHHHHCCCCEECCCCCEEECC--EEEEEEECCCCH-HHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 98688841264408899999999846780554899888430--028998450265-989753134321004678899999
Q ss_pred HHHH-CCHHHHHCCCEEEECCCCCHH
Q ss_conf 9851-224321004259983885668
Q gi|254781026|r 156 YQAR-ISGPLMDRIDIRIAVPSRTHI 180 (186)
Q Consensus 156 Y~~r-ls~plldR~Dl~v~~~~~~~~ 180 (186)
T Consensus 670 ~l~~~F~PEFLNRid~II~F~~L~~~ 695 (786)
T COG0542 670 ELKKHFRPEFLNRIDEIIPFNPLSKE 695 (786)
T ss_pred HHHHHCCHHHHHHCCCEEECCCCCHH
T ss_conf 99853899898512617850679989