HHsearch alignment for GI: 254781026 and conserved domain: COG0542

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=97.69  E-value=6.3e-05  Score=49.68  Aligned_cols=93  Identities=28%  Similarity=0.397  Sum_probs=58.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCC----CCCHHH
Q ss_conf             9777860599999998874889897885323000000278887565311120203775210011023434----568279
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGL----QVLPGE   76 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~----~~~pG~   76 (186)
T Consensus       196 LiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g-----~L-------------vAGakyRGeFEeRlk~vl~e  257 (786)
T COG0542         196 LVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG-----SL-------------VAGAKYRGEFEERLKAVLKE  257 (786)
T ss_pred             EECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEECHH-----HH-------------HCCCCCCCCHHHHHHHHHHH
T ss_conf             7668988899999899999746999978758879971487-----67-------------46465357389999999999


Q ss_pred             HHHCCCCEEEEECHHHC---------CHHHHHHHHHHHHCCCEE
Q ss_conf             98279988998038785---------988999999999719523
Q gi|254781026|r   77 DSLAHNGVLFLDEIPEF---------SPQTLNALRQPLETGECI  111 (186)
Q Consensus        77 i~lAh~GVLflDE~~e~---------~~~~l~~L~~~le~g~v~  111 (186)
T Consensus       258 v~~~~~vILFIDEiHtiVGAG~~~g~a~DAaNiLKPaLARGeL~  301 (786)
T COG0542         258 VEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELR  301 (786)
T ss_pred             HHCCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEE
T ss_conf             85179849998235540577766666512566467787458737