HHsearch alignment for GI: 254781026 and conserved domain: COG1220
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=95.92 E-value=0.0037 Score=39.32 Aligned_cols=80 Identities=21% Similarity=0.341 Sum_probs=44.7
Q ss_pred CCCCEEEEECHHHCCHHH------------HHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 799889980387859889------------99999999719523010030789847015675227465887889887643
Q gi|254781026|r 80 AHNGVLFLDEIPEFSPQT------------LNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCI 147 (186)
Q Consensus 80 Ah~GVLflDE~~e~~~~~------------l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~ 147 (186)
T Consensus 249 E~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlL-PlvEGstV~TKyG~Vk---TdHILFIasGAFh~--sKPSD---- 318 (444)
T COG1220 249 EQNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLL-PLVEGSTVSTKYGPVK---TDHILFIASGAFHV--AKPSD---- 318 (444)
T ss_pred HHCCEEEEEHHHHHHHCCCCCCCCCCHHHHCCCCC-CCCCCCEEECCCCCCC---CCEEEEEECCCEEC--CCHHH----
T ss_conf 85690897346678743788998866432010210-3105754431544401---44378871482003--78132----
Q ss_pred CCHHHHHHHHHHCCHHHHHCCCEEEECCCCCHHH
Q ss_conf 8999999998512243210042599838856688
Q gi|254781026|r 148 RGPRCATEYQARISGPLMDRIDIRIAVPSRTHIR 181 (186)
Q Consensus 148 c~~~~~~~Y~~rls~plldR~Dl~v~~~~~~~~~ 181 (186)
T Consensus 319 ------------LiPELQGRfPIRVEL~~Lt~~D 340 (444)
T COG1220 319 ------------LIPELQGRFPIRVELDALTKED 340 (444)
T ss_pred ------------CCHHHCCCCCEEEECCCCCHHH
T ss_conf ------------1766627773488704489989