HHsearch alignment for GI: 254781026 and conserved domain: COG1220

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=95.92  E-value=0.0037  Score=39.32  Aligned_cols=80  Identities=21%  Similarity=0.341  Sum_probs=44.7

Q ss_pred             CCCCEEEEECHHHCCHHH------------HHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             799889980387859889------------99999999719523010030789847015675227465887889887643
Q gi|254781026|r   80 AHNGVLFLDEIPEFSPQT------------LNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCI  147 (186)
Q Consensus        80 Ah~GVLflDE~~e~~~~~------------l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~  147 (186)
T Consensus       249 E~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlL-PlvEGstV~TKyG~Vk---TdHILFIasGAFh~--sKPSD----  318 (444)
T COG1220         249 EQNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLL-PLVEGSTVSTKYGPVK---TDHILFIASGAFHV--AKPSD----  318 (444)
T ss_pred             HHCCEEEEEHHHHHHHCCCCCCCCCCHHHHCCCCC-CCCCCCEEECCCCCCC---CCEEEEEECCCEEC--CCHHH----
T ss_conf             85690897346678743788998866432010210-3105754431544401---44378871482003--78132----


Q ss_pred             CCHHHHHHHHHHCCHHHHHCCCEEEECCCCCHHH
Q ss_conf             8999999998512243210042599838856688
Q gi|254781026|r  148 RGPRCATEYQARISGPLMDRIDIRIAVPSRTHIR  181 (186)
Q Consensus       148 c~~~~~~~Y~~rls~plldR~Dl~v~~~~~~~~~  181 (186)
T Consensus       319 ------------LiPELQGRfPIRVEL~~Lt~~D  340 (444)
T COG1220         319 ------------LIPELQGRFPIRVELDALTKED  340 (444)
T ss_pred             ------------CCHHHCCCCCEEEECCCCCHHH
T ss_conf             ------------1766627773488704489989