HHsearch alignment for GI: 254781026 and conserved domain: COG1221

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].
Probab=99.46  E-value=4.7e-14  Score=103.24  Aligned_cols=143  Identities=24%  Similarity=0.282  Sum_probs=93.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf             97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA   80 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA   80 (186)
T Consensus       106 i~GetGtGKel~A~~iH~~s~r~-----~~~PFI~~NCa~~~en~~~~--eLF------G~~kGaftGa~~~k~Glfe~A  172 (403)
T COG1221         106 IIGETGTGKELFARLIHALSARR-----AEAPFIAFNCAAYSENLQEA--ELF------GHEKGAFTGAQGGKAGLFEQA  172 (403)
T ss_pred             EECCCCCCHHHHHHHHHHHHHCC-----CCCCEEEEEHHHHCCCHHHH--HHH------CCCCCEEECCCCCCCCHHEEC
T ss_conf             86688753889999999861213-----58987997777737677777--773------200000025667867642052


Q ss_pred             CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             99889980387859889999999997195230100307898470156752274658878898876438999999998512
Q gi|254781026|r   81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARI  160 (186)
Q Consensus        81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~rl  160 (186)
T Consensus       173 ~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~--~rvG~~~~~~~dVRli~AT~~~l--------------~~~~------~  230 (403)
T COG1221         173 NGGTLFLDEIHRLPPEGQEKLLRVLEEGEY--RRVGGSQPRPVDVRLICATTEDL--------------EEAV------L  230 (403)
T ss_pred             CCCEEEHHHHHHCCHHHHHHHHHHHHCCCE--EECCCCCCCCCCCEEEECCCCCH--------------HHHH------H
T ss_conf             797776563653798589999999871865--76688888677740451356687--------------9998------7


Q ss_pred             CH-HHHH-CCCEEEECCCCC
Q ss_conf             24-3210-042599838856
Q gi|254781026|r  161 SG-PLMD-RIDIRIAVPSRT  178 (186)
Q Consensus       161 s~-plld-R~Dl~v~~~~~~  178 (186)
T Consensus       231 ~g~dl~~rl~~~~I~LPpLr  250 (403)
T COG1221         231 AGADLTRRLNILTITLPPLR  250 (403)
T ss_pred             HHCCHHHHHCCCEECCCCHH
T ss_conf             40525564167543189724