HHsearch alignment for GI: 254781026 and conserved domain: COG1221
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].
Probab=99.46 E-value=4.7e-14 Score=103.24 Aligned_cols=143 Identities=24% Similarity=0.282 Sum_probs=93.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
T Consensus 106 i~GetGtGKel~A~~iH~~s~r~-----~~~PFI~~NCa~~~en~~~~--eLF------G~~kGaftGa~~~k~Glfe~A 172 (403)
T COG1221 106 IIGETGTGKELFARLIHALSARR-----AEAPFIAFNCAAYSENLQEA--ELF------GHEKGAFTGAQGGKAGLFEQA 172 (403)
T ss_pred EECCCCCCHHHHHHHHHHHHHCC-----CCCCEEEEEHHHHCCCHHHH--HHH------CCCCCEEECCCCCCCCHHEEC
T ss_conf 86688753889999999861213-----58987997777737677777--773------200000025667867642052
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 99889980387859889999999997195230100307898470156752274658878898876438999999998512
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARI 160 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~rl 160 (186)
T Consensus 173 ~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~--~rvG~~~~~~~dVRli~AT~~~l--------------~~~~------~ 230 (403)
T COG1221 173 NGGTLFLDEIHRLPPEGQEKLLRVLEEGEY--RRVGGSQPRPVDVRLICATTEDL--------------EEAV------L 230 (403)
T ss_pred CCCEEEHHHHHHCCHHHHHHHHHHHHCCCE--EECCCCCCCCCCCEEEECCCCCH--------------HHHH------H
T ss_conf 797776563653798589999999871865--76688888677740451356687--------------9998------7
Q ss_pred CH-HHHH-CCCEEEECCCCC
Q ss_conf 24-3210-042599838856
Q gi|254781026|r 161 SG-PLMD-RIDIRIAVPSRT 178 (186)
Q Consensus 161 s~-plld-R~Dl~v~~~~~~ 178 (186)
T Consensus 231 ~g~dl~~rl~~~~I~LPpLr 250 (403)
T COG1221 231 AGADLTRRLNILTITLPPLR 250 (403)
T ss_pred HHCCHHHHHCCCEECCCCHH
T ss_conf 40525564167543189724