HHsearch alignment for GI: 254781026 and conserved domain: COG1222
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones].
Probab=98.50 E-value=4.5e-07 Score=62.26 Aligned_cols=117 Identities=22% Similarity=0.358 Sum_probs=70.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
T Consensus 190 LYGPPGTGKTLLAkAVA~~T-----------------------~AtF-----IrvvgSElVqKYiGEGaR-lVRelF~lA 240 (406)
T COG1222 190 LYGPPGTGKTLLAKAVANQT-----------------------DATF-----IRVVGSELVQKYIGEGAR-LVRELFELA 240 (406)
T ss_pred EECCCCCCHHHHHHHHHHCC-----------------------CCEE-----EEECCHHHHHHHHCCCHH-HHHHHHHHH
T ss_conf 66899975889999987205-----------------------8669-----994219999998341169-999999987
Q ss_pred --C-CCEEEEECHHHC-----------CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf --9-988998038785-----------98899999999971952301003078984701567522746588788988764
Q gi|254781026|r 81 --H-NGVLFLDEIPEF-----------SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVC 146 (186)
Q Consensus 81 --h-~GVLflDE~~e~-----------~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c 146 (186)
T Consensus 241 rekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~--------nvKVI~ATNR~------D~---- 302 (406)
T COG1222 241 REKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG--------NVKVIMATNRP------DI---- 302 (406)
T ss_pred HHCCCEEEEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC--------CEEEEEECCCC------CC----
T ss_conf 4149849998311223111136888850999999999998605889788--------76899855885------55----
Q ss_pred CCCHHHHHHHHHHCCHHHH--HCCCEEEECCCC
Q ss_conf 3899999999851224321--004259983885
Q gi|254781026|r 147 IRGPRCATEYQARISGPLM--DRIDIRIAVPSR 177 (186)
Q Consensus 147 ~c~~~~~~~Y~~rls~pll--dR~Dl~v~~~~~ 177 (186)
T Consensus 303 -------------LDPALLRPGR~DRkIEfplP 322 (406)
T COG1222 303 -------------LDPALLRPGRFDRKIEFPLP 322 (406)
T ss_pred -------------CCHHHCCCCCCCCEEECCCC
T ss_conf -------------57665088754530116898