HHsearch alignment for GI: 254781026 and conserved domain: COG1222

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones].
Probab=98.50  E-value=4.5e-07  Score=62.26  Aligned_cols=117  Identities=22%  Similarity=0.358  Sum_probs=70.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf             97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA   80 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA   80 (186)
T Consensus       190 LYGPPGTGKTLLAkAVA~~T-----------------------~AtF-----IrvvgSElVqKYiGEGaR-lVRelF~lA  240 (406)
T COG1222         190 LYGPPGTGKTLLAKAVANQT-----------------------DATF-----IRVVGSELVQKYIGEGAR-LVRELFELA  240 (406)
T ss_pred             EECCCCCCHHHHHHHHHHCC-----------------------CCEE-----EEECCHHHHHHHHCCCHH-HHHHHHHHH
T ss_conf             66899975889999987205-----------------------8669-----994219999998341169-999999987


Q ss_pred             --C-CCEEEEECHHHC-----------CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             --9-988998038785-----------98899999999971952301003078984701567522746588788988764
Q gi|254781026|r   81 --H-NGVLFLDEIPEF-----------SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVC  146 (186)
Q Consensus        81 --h-~GVLflDE~~e~-----------~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c  146 (186)
T Consensus       241 rekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~--------nvKVI~ATNR~------D~----  302 (406)
T COG1222         241 REKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG--------NVKVIMATNRP------DI----  302 (406)
T ss_pred             HHCCCEEEEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC--------CEEEEEECCCC------CC----
T ss_conf             4149849998311223111136888850999999999998605889788--------76899855885------55----


Q ss_pred             CCCHHHHHHHHHHCCHHHH--HCCCEEEECCCC
Q ss_conf             3899999999851224321--004259983885
Q gi|254781026|r  147 IRGPRCATEYQARISGPLM--DRIDIRIAVPSR  177 (186)
Q Consensus       147 ~c~~~~~~~Y~~rls~pll--dR~Dl~v~~~~~  177 (186)
T Consensus       303 -------------LDPALLRPGR~DRkIEfplP  322 (406)
T COG1222         303 -------------LDPALLRPGRFDRKIEFPLP  322 (406)
T ss_pred             -------------CCHHHCCCCCCCCEEECCCC
T ss_conf             -------------57665088754530116898