HHsearch alignment for GI: 254781026 and conserved domain: COG1223
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only].
Probab=98.20 E-value=2.6e-06 Score=57.78 Aligned_cols=107 Identities=27% Similarity=0.392 Sum_probs=58.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCC-----CCCCCC--
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023-----434568--
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIG-----GGLQVL-- 73 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~g-----g~~~~~-- 73 (186)
T Consensus 156 FyGppGTGKTm~Akalane~---------------------kv--------p~l----~vkat~liGehVGdgar~Ihel 202 (368)
T COG1223 156 FYGPPGTGKTMMAKALANEA---------------------KV--------PLL----LVKATELIGEHVGDGARRIHEL 202 (368)
T ss_pred EECCCCCCHHHHHHHHHCCC---------------------CC--------CEE----EECHHHHHHHHHHHHHHHHHHH
T ss_conf 77899964879999872545---------------------78--------548----7116888887743598999999
Q ss_pred HHHHHHCCCCEEEEECHHHCC------------HHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCC
Q ss_conf 279982799889980387859------------88999999999719523010030789847015675227465887889
Q gi|254781026|r 74 PGEDSLAHNGVLFLDEIPEFS------------PQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNK 141 (186)
Q Consensus 74 pG~i~lAh~GVLflDE~~e~~------------~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~ 141 (186)
T Consensus 203 y~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTel-Dgi~--eneGV--------vtIaaTN~p~------ 265 (368)
T COG1223 203 YERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTEL-DGIK--ENEGV--------VTIAATNRPE------ 265 (368)
T ss_pred HHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC-CCCC--CCCCE--------EEEEECCCHH------
T ss_conf 99887519849984002455530457886454999999999850-1744--57756--------9995059846------
Q ss_pred CCCCCCCCHHHHHHHHHHCCHHHHHCCCEEEEC
Q ss_conf 887643899999999851224321004259983
Q gi|254781026|r 142 DENVCIRGPRCATEYQARISGPLMDRIDIRIAV 174 (186)
Q Consensus 142 ~~~~c~c~~~~~~~Y~~rls~plldR~Dl~v~~ 174 (186)
T Consensus 266 -----------------~LD~aiRsRFEeEIEF 281 (368)
T COG1223 266 -----------------LLDPAIRSRFEEEIEF 281 (368)
T ss_pred -----------------HCCHHHHHHHHHEEEE
T ss_conf -----------------5078888655650656