HHsearch alignment for GI: 254781026 and conserved domain: COG1224
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription].
Probab=95.58 E-value=0.05 Score=32.68 Aligned_cols=77 Identities=32% Similarity=0.425 Sum_probs=52.2
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 99889980387859889999999997195230100307898470156752274658878898876438999999998512
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARI 160 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~rl 160 (186)
T Consensus 291 VpGVLFIDEvHmLDIE~FsFlnrAlEse~a--------------PIii~AtNRG~~kiRGTd----~~sP-------hGI 345 (450)
T COG1224 291 VPGVLFIDEVHMLDIECFSFLNRALESELA--------------PIIILATNRGMTKIRGTD----IESP-------HGI 345 (450)
T ss_pred ECCEEEEECHHHHHHHHHHHHHHHHHCCCC--------------CEEEEECCCCEEEECCCC----CCCC-------CCC
T ss_conf 134289732134557899999987631467--------------579997177500121667----7688-------889
Q ss_pred CHHHHHCCCEEEECC-CCCHHHH
Q ss_conf 243210042599838-8566888
Q gi|254781026|r 161 SGPLMDRIDIRIAVP-SRTHIRS 182 (186)
Q Consensus 161 s~plldR~Dl~v~~~-~~~~~~~ 182 (186)
T Consensus 346 P~DlLDRllII~t~py~~~Eire 368 (450)
T COG1224 346 PLDLLDRLLIISTRPYSREEIRE 368 (450)
T ss_pred CHHHHHHEEEEECCCCCHHHHHH
T ss_conf 87666225677447798899999