HHsearch alignment for GI: 254781026 and conserved domain: COG2204
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].
Probab=99.21 E-value=3.2e-11 Score=86.61 Aligned_cols=104 Identities=23% Similarity=0.286 Sum_probs=80.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCC-----C-------HHHCCCCC
Q ss_conf 77786059999999887488989788532300000027888756531112020377521-----0-------01102343
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSV-----T-------IAALIGGG 69 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~-----~-------~~~l~gg~ 69 (186)
T Consensus 170 ~GESGtGKElvAr~IH~~S~R~--------------------~------~PFVavNcaAip~~l~ESELFGhekGAFTGA 223 (464)
T COG2204 170 TGESGTGKELVARAIHQASPRA--------------------K------GPFIAVNCAAIPENLLESELFGHEKGAFTGA 223 (464)
T ss_pred ECCCCCCHHHHHHHHHHHCCCC--------------------C------CCCEEEECCCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 7789875899999998607445--------------------8------9925633464898887777614565676776
Q ss_pred CCCCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCC
Q ss_conf 4568279982799889980387859889999999997195230100307898470156752274
Q gi|254781026|r 70 LQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133 (186)
Q Consensus 70 ~~~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NP 133 (186)
T Consensus 224 ~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~--~~~rvG~~~~i~vdvRiIaaT~~ 285 (464)
T COG2204 224 ITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQER--EFERVGGNKPIKVDVRIIAATNR 285 (464)
T ss_pred CCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHCC--EEEECCCCCEECEEEEEEEECCC
T ss_conf 434576157737965873231109999999999998707--06735888600001699960577