HHsearch alignment for GI: 254781026 and conserved domain: COG2255

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair].
Probab=99.44  E-value=6.9e-13  Score=96.38  Aligned_cols=113  Identities=30%  Similarity=0.402  Sum_probs=78.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHH--
Q ss_conf             977786059999999887488989788532300000027888756531112020377521001102343456827998--
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDS--   78 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~--   78 (186)
T Consensus        57 l~GPPGlGKTTLA~IIA~Emg----------vn~k~tsG-----------------------------p~leK~gDlaai   97 (332)
T COG2255          57 LFGPPGLGKTTLAHIIANELG----------VNLKITSG-----------------------------PALEKPGDLAAI   97 (332)
T ss_pred             EECCCCCCHHHHHHHHHHHHC----------CCEEECCC-----------------------------CCCCCHHHHHHH
T ss_conf             647998768889999999856----------77376366-----------------------------201572659999


Q ss_pred             ---HCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHC----CEEEEEC-CCEEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf             ---2799889980387859889999999997195230100----3078984-7015675227465887889887643899
Q gi|254781026|r   79 ---LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARA----NRKISYP-SRIQLIAAMNPCRCGMSNKDENVCIRGP  150 (186)
Q Consensus        79 ---lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~----g~~~~~P-a~f~Lvaa~NPcpcG~~~~~~~~c~c~~  150 (186)
T Consensus        98 Lt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~----------------  161 (332)
T COG2255          98 LTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRA----------------  161 (332)
T ss_pred             HHCCCCCCEEEEEHHHHCCHHHHHHHHHHHHHEEEEEEECCCCCCCEEECCCCCEEEEEECCCC----------------
T ss_conf             8639867767772553147428989646753105778972487553476379981375101346----------------


Q ss_pred             HHHHHHHHHCCHHHHHCCCEEEECC
Q ss_conf             9999998512243210042599838
Q gi|254781026|r  151 RCATEYQARISGPLMDRIDIRIAVP  175 (186)
Q Consensus       151 ~~~~~Y~~rls~plldR~Dl~v~~~  175 (186)
T Consensus       162 -------G~lt~PLrdRFGi~~rle  179 (332)
T COG2255         162 -------GMLTNPLRDRFGIIQRLE  179 (332)
T ss_pred             -------CCCCCHHHHHCCCEEEEE
T ss_conf             -------645633688628604540