HHsearch alignment for GI: 254781026 and conserved domain: COG2255
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair].
Probab=99.44 E-value=6.9e-13 Score=96.38 Aligned_cols=113 Identities=30% Similarity=0.402 Sum_probs=78.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHH--
Q ss_conf 977786059999999887488989788532300000027888756531112020377521001102343456827998--
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDS-- 78 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~-- 78 (186)
T Consensus 57 l~GPPGlGKTTLA~IIA~Emg----------vn~k~tsG-----------------------------p~leK~gDlaai 97 (332)
T COG2255 57 LFGPPGLGKTTLAHIIANELG----------VNLKITSG-----------------------------PALEKPGDLAAI 97 (332)
T ss_pred EECCCCCCHHHHHHHHHHHHC----------CCEEECCC-----------------------------CCCCCHHHHHHH
T ss_conf 647998768889999999856----------77376366-----------------------------201572659999
Q ss_pred ---HCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHC----CEEEEEC-CCEEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf ---2799889980387859889999999997195230100----3078984-7015675227465887889887643899
Q gi|254781026|r 79 ---LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARA----NRKISYP-SRIQLIAAMNPCRCGMSNKDENVCIRGP 150 (186)
Q Consensus 79 ---lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~----g~~~~~P-a~f~Lvaa~NPcpcG~~~~~~~~c~c~~ 150 (186)
T Consensus 98 Lt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~---------------- 161 (332)
T COG2255 98 LTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRA---------------- 161 (332)
T ss_pred HHCCCCCCEEEEEHHHHCCHHHHHHHHHHHHHEEEEEEECCCCCCCEEECCCCCEEEEEECCCC----------------
T ss_conf 8639867767772553147428989646753105778972487553476379981375101346----------------
Q ss_pred HHHHHHHHHCCHHHHHCCCEEEECC
Q ss_conf 9999998512243210042599838
Q gi|254781026|r 151 RCATEYQARISGPLMDRIDIRIAVP 175 (186)
Q Consensus 151 ~~~~~Y~~rls~plldR~Dl~v~~~ 175 (186)
T Consensus 162 -------G~lt~PLrdRFGi~~rle 179 (332)
T COG2255 162 -------GMLTNPLRDRFGIIQRLE 179 (332)
T ss_pred -------CCCCCHHHHHCCCEEEEE
T ss_conf -------645633688628604540