HHsearch alignment for GI: 254781026 and conserved domain: COG2256

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair].
Probab=99.29  E-value=5e-12  Score=91.35  Aligned_cols=106  Identities=27%  Similarity=0.385  Sum_probs=66.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHH-
Q ss_conf             9777860599999998874889897885323000000278887565311120203775210011023434568279982-
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSL-   79 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~l-   79 (186)
T Consensus        53 l~GPPG~GKTTlA~liA~~~~----------~~f~~~sA----------------v~~gvkd--l---r~i~e~a~~~~~  101 (436)
T COG2256          53 LWGPPGTGKTTLARLIAGTTN----------AAFEALSA----------------VTSGVKD--L---REIIEEARKNRL  101 (436)
T ss_pred             EECCCCCCHHHHHHHHHHHHC----------CCEEEECC----------------CCCCHHH--H---HHHHHHHHHHHH
T ss_conf             778999888899999987617----------76699515----------------2346799--9---999999999872


Q ss_pred             -CCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEEC--CCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             -7998899803878598899999999971952301003078984701567522--7465887889887643899999999
Q gi|254781026|r   80 -AHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAM--NPCRCGMSNKDENVCIRGPRCATEY  156 (186)
Q Consensus        80 -Ah~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~--NPcpcG~~~~~~~~c~c~~~~~~~Y  156 (186)
T Consensus       102 ~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~i---------------ilIGATTENPsF---------------------  145 (436)
T COG2256         102 LGRRTILFLDEIHRFNKAQQDALLPHVENGTI---------------ILIGATTENPSF---------------------  145 (436)
T ss_pred             CCCCEEEEEEHHHHCCHHHHHHHHHHHCCCEE---------------EEEECCCCCCCE---------------------
T ss_conf             58834998722533374456551033248868---------------999626789871---------------------


Q ss_pred             HHHCCHHHHHCCCEEEECC
Q ss_conf             8512243210042599838
Q gi|254781026|r  157 QARISGPLMDRIDIRIAVP  175 (186)
Q Consensus       157 ~~rls~plldR~Dl~v~~~  175 (186)
T Consensus       146 --~ln~ALlSR~~vf~lk~  162 (436)
T COG2256         146 --ELNPALLSRARVFELKP  162 (436)
T ss_pred             --EECHHHHHHHHEEEEEC
T ss_conf             --40388861104156516