HHsearch alignment for GI: 254781026 and conserved domain: COG2256
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair].
Probab=99.29 E-value=5e-12 Score=91.35 Aligned_cols=106 Identities=27% Similarity=0.385 Sum_probs=66.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHH-
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434568279982-
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSL- 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~l- 79 (186)
T Consensus 53 l~GPPG~GKTTlA~liA~~~~----------~~f~~~sA----------------v~~gvkd--l---r~i~e~a~~~~~ 101 (436)
T COG2256 53 LWGPPGTGKTTLARLIAGTTN----------AAFEALSA----------------VTSGVKD--L---REIIEEARKNRL 101 (436)
T ss_pred EECCCCCCHHHHHHHHHHHHC----------CCEEEECC----------------CCCCHHH--H---HHHHHHHHHHHH
T ss_conf 778999888899999987617----------76699515----------------2346799--9---999999999872
Q ss_pred -CCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEEC--CCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf -7998899803878598899999999971952301003078984701567522--7465887889887643899999999
Q gi|254781026|r 80 -AHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAM--NPCRCGMSNKDENVCIRGPRCATEY 156 (186)
Q Consensus 80 -Ah~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~--NPcpcG~~~~~~~~c~c~~~~~~~Y 156 (186)
T Consensus 102 ~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~i---------------ilIGATTENPsF--------------------- 145 (436)
T COG2256 102 LGRRTILFLDEIHRFNKAQQDALLPHVENGTI---------------ILIGATTENPSF--------------------- 145 (436)
T ss_pred CCCCEEEEEEHHHHCCHHHHHHHHHHHCCCEE---------------EEEECCCCCCCE---------------------
T ss_conf 58834998722533374456551033248868---------------999626789871---------------------
Q ss_pred HHHCCHHHHHCCCEEEECC
Q ss_conf 8512243210042599838
Q gi|254781026|r 157 QARISGPLMDRIDIRIAVP 175 (186)
Q Consensus 157 ~~rls~plldR~Dl~v~~~ 175 (186)
T Consensus 146 --~ln~ALlSR~~vf~lk~ 162 (436)
T COG2256 146 --ELNPALLSRARVFELKP 162 (436)
T ss_pred --EECHHHHHHHHEEEEEC
T ss_conf --40388861104156516