HHsearch alignment for GI: 254781026 and conserved domain: COG2812
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair].
Probab=96.92 E-value=0.00071 Score=43.51 Aligned_cols=112 Identities=26% Similarity=0.257 Sum_probs=59.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC-----HHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHH
Q ss_conf 977786059999999887488989-----788532300000027888756531112020377521001102343456827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS-----LEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPG 75 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~-----~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG 75 (186)
T Consensus 43 fsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck--~I~~g~~~DviEiD----aASn~gVddiR~i~e~v~y~P- 115 (515)
T COG2812 43 FSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCK--EINEGSLIDVIEID----AASNTGVDDIREIIEKVNYAP- 115 (515)
T ss_pred HCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHH--HHHCCCCCCCHHHH----HHHCCCHHHHHHHHHHHCCCC-
T ss_conf 13777767104999999995688987777225316668--65148864101136----444548679999998724688-
Q ss_pred HHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEE-EECCCC
Q ss_conf 99827998899803878598899999999971952301003078984701567-522746
Q gi|254781026|r 76 EDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLI-AAMNPC 134 (186)
Q Consensus 76 ~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lv-aa~NPc 134 (186)
T Consensus 116 --~~~ryKVyiIDEvHMLS~~afNALLKTLEEP-------------P~hV~FIlATTe~~ 160 (515)
T COG2812 116 --SEGRYKVYIIDEVHMLSKQAFNALLKTLEEP-------------PSHVKFILATTEPQ 160 (515)
T ss_pred --CCCCCEEEEEECHHHHHHHHHHHHHCCCCCC-------------CCCEEEEEECCCCC
T ss_conf --6666418998318764378888875111368-------------66748998538867