HHsearch alignment for GI: 254781026 and conserved domain: COG2812

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair].
Probab=96.92  E-value=0.00071  Score=43.51  Aligned_cols=112  Identities=26%  Similarity=0.257  Sum_probs=59.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCC-----HHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHH
Q ss_conf             977786059999999887488989-----788532300000027888756531112020377521001102343456827
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLS-----LEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPG   75 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~-----~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG   75 (186)
T Consensus        43 fsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck--~I~~g~~~DviEiD----aASn~gVddiR~i~e~v~y~P-  115 (515)
T COG2812          43 FSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCK--EINEGSLIDVIEID----AASNTGVDDIREIIEKVNYAP-  115 (515)
T ss_pred             HCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHH--HHHCCCCCCCHHHH----HHHCCCHHHHHHHHHHHCCCC-
T ss_conf             13777767104999999995688987777225316668--65148864101136----444548679999998724688-


Q ss_pred             HHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEE-EECCCC
Q ss_conf             99827998899803878598899999999971952301003078984701567-522746
Q gi|254781026|r   76 EDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLI-AAMNPC  134 (186)
Q Consensus        76 ~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lv-aa~NPc  134 (186)
T Consensus       116 --~~~ryKVyiIDEvHMLS~~afNALLKTLEEP-------------P~hV~FIlATTe~~  160 (515)
T COG2812         116 --SEGRYKVYIIDEVHMLSKQAFNALLKTLEEP-------------PSHVKFILATTEPQ  160 (515)
T ss_pred             --CCCCCEEEEEECHHHHHHHHHHHHHCCCCCC-------------CCCEEEEEECCCCC
T ss_conf             --6666418998318764378888875111368-------------66748998538867