HHsearch alignment for GI: 254781026 and conserved domain: COG3604
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms].
Probab=99.25 E-value=9e-12 Score=89.85 Aligned_cols=109 Identities=25% Similarity=0.322 Sum_probs=82.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHH-------HCCCCCCCCCH
Q ss_conf 77786059999999887488989788532300000027888756531112020377521001-------10234345682
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIA-------ALIGGGLQVLP 74 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~-------~l~gg~~~~~p 74 (186)
T Consensus 252 ~GETGtGKElvAraIH~~S~R~~--------------------kPfV~~-NCAAlPesLlESELFGHeKGAFTGA~~~r~ 310 (550)
T COG3604 252 RGETGTGKELVARAIHQLSPRRD--------------------KPFVKL-NCAALPESLLESELFGHEKGAFTGAINTRR 310 (550)
T ss_pred ECCCCCCHHHHHHHHHHHCCCCC--------------------CCCEEE-ECCCCCHHHHHHHHHCCCCCCCCCCHHCCC
T ss_conf 45888538999999987375557--------------------986663-122253788888874533223335101467
Q ss_pred HHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCC
Q ss_conf 79982799889980387859889999999997195230100307898470156752274
Q gi|254781026|r 75 GEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133 (186)
Q Consensus 75 G~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NP 133 (186)
T Consensus 311 GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQeg--EieRvG~~r~ikVDVRiIAATNR 367 (550)
T COG3604 311 GRFELADGGTLFLDEIGELPLALQAKLLRVLQEG--EIERVGGDRTIKVDVRVIAATNR 367 (550)
T ss_pred CCEEECCCCEEECHHHCCCCHHHHHHHHHHHHHC--CEEECCCCCEEEEEEEEEECCCH
T ss_conf 6356557975760220367877889999998636--52534799636777899821353