HHsearch alignment for GI: 254781026 and conserved domain: COG3604

>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms].
Probab=99.25  E-value=9e-12  Score=89.85  Aligned_cols=109  Identities=25%  Similarity=0.322  Sum_probs=82.6

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHH-------HCCCCCCCCCH
Q ss_conf             77786059999999887488989788532300000027888756531112020377521001-------10234345682
Q gi|254781026|r    2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIA-------ALIGGGLQVLP   74 (186)
Q Consensus         2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~-------~l~gg~~~~~p   74 (186)
T Consensus       252 ~GETGtGKElvAraIH~~S~R~~--------------------kPfV~~-NCAAlPesLlESELFGHeKGAFTGA~~~r~  310 (550)
T COG3604         252 RGETGTGKELVARAIHQLSPRRD--------------------KPFVKL-NCAALPESLLESELFGHEKGAFTGAINTRR  310 (550)
T ss_pred             ECCCCCCHHHHHHHHHHHCCCCC--------------------CCCEEE-ECCCCCHHHHHHHHHCCCCCCCCCCHHCCC
T ss_conf             45888538999999987375557--------------------986663-122253788888874533223335101467


Q ss_pred             HHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCC
Q ss_conf             79982799889980387859889999999997195230100307898470156752274
Q gi|254781026|r   75 GEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP  133 (186)
Q Consensus        75 G~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NP  133 (186)
T Consensus       311 GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQeg--EieRvG~~r~ikVDVRiIAATNR  367 (550)
T COG3604         311 GRFELADGGTLFLDEIGELPLALQAKLLRVLQEG--EIERVGGDRTIKVDVRVIAATNR  367 (550)
T ss_pred             CCEEECCCCEEECHHHCCCCHHHHHHHHHHHHHC--CEEECCCCCEEEEEEEEEECCCH
T ss_conf             6356557975760220367877889999998636--52534799636777899821353