HHsearch alignment for GI: 254781026 and conserved domain: COG3829
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].
Probab=99.44 E-value=7.9e-14 Score=101.89 Aligned_cols=120 Identities=24% Similarity=0.306 Sum_probs=83.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
T Consensus 273 i~GESGTGKElfA~~IH~~S~R~~~P------FIaiNCaAiP--e~LlESELF-----Gye~GAFTGA~~~GK~GlfE~A 339 (560)
T COG3829 273 ILGESGTGKELFARAIHNLSPRANGP------FIAINCAAIP--ETLLESELF-----GYEKGAFTGASKGGKPGLFELA 339 (560)
T ss_pred EECCCCCCHHHHHHHHHHCCCCCCCC------EEEEECCCCC--HHHHHHHHH-----CCCCCCCCCCCCCCCCCCEEEC
T ss_conf 95378866899999987448434798------0787643388--888888872-----7677642464457997605441
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCC
Q ss_conf 9988998038785988999999999719523010030789847015675227465
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCR 135 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcp 135 (186)
T Consensus 340 ~gGTLFLDEIgempl~LQaKLLRVLQEk--ei~rvG~t~~~~vDVRIIAATN~nL 392 (560)
T COG3829 340 NGGTLFLDEIGEMPLPLQAKLLRVLQEK--EIERVGGTKPIPVDVRIIAATNRNL 392 (560)
T ss_pred CCCEEEEHHHCCCCHHHHHHHHHHHHHC--EEEECCCCCCEEEEEEEEECCCCCH
T ss_conf 6983771232039989999999987535--3785378875356789994257589