HHsearch alignment for GI: 254781026 and conserved domain: COG3854
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown].
Probab=96.88 E-value=0.00079 Score=43.22 Aligned_cols=93 Identities=19% Similarity=0.199 Sum_probs=44.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEE------ECCCC-CCCHHHCCCCCCCCC
Q ss_conf 97778605999999988748898978853230000002788875653111202------03775-210011023434568
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPF------RSPHH-SVTIAALIGGGLQVL 73 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~------~~~~~-~~~~~~l~gg~~~~~ 73 (186)
T Consensus 142 iigpP~~GKTTlLRdiaR~~s~g~-------------~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~c--pk 206 (308)
T COG3854 142 IIGPPQVGKTTLLRDIARLLSDGI-------------NQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPC--PK 206 (308)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCC-------------CCCCCCEEEEEECCCHHHCCCCCCCHHHHHHHHHHCCCC--HH
T ss_conf 965998870779999999863151-------------126773289971500430343588603232210104656--17
Q ss_pred HH----HHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCE
Q ss_conf 27----99827998899803878598899999999971952
Q gi|254781026|r 74 PG----EDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGEC 110 (186)
Q Consensus 74 pG----~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v 110 (186)
T Consensus 207 ~~gmmmaIrsm~PEViIvDEIGt~--~d~~A~~ta~~~GVk 245 (308)
T COG3854 207 AEGMMMAIRSMSPEVIIVDEIGTE--EDALAILTALHAGVK 245 (308)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCH--HHHHHHHHHHHCCCE
T ss_conf 888999999549957998343647--779999999854858