HHsearch alignment for GI: 254781026 and conserved domain: COG4650

>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].

Probab=98.87  E-value=6.7e-10  Score=78.87  Aligned_cols=113  Identities=26%  Similarity=0.310  Sum_probs=76.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCC------HHHCCCCCCCCCH
Q ss_conf             9777860599999998874889897885323000000278887565311120203775210------0110234345682
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVT------IAALIGGGLQVLP   74 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~------~~~l~gg~~~~~p   74 (186)
T Consensus       213 l~gptgagksflarriyelk~-----------arhq~sg~----fvevncatlrg--d~amsalfghvkgaftga~~~r~  275 (531)
T COG4650         213 LNGPTGAGKSFLARRIYELKQ-----------ARHQFSGA----FVEVNCATLRG--DTAMSALFGHVKGAFTGARESRE  275 (531)
T ss_pred             EECCCCCCHHHHHHHHHHHHH-----------HHHHCCCC----EEEEEEEEECC--CHHHHHHHHHHHCCCCCCHHHHH
T ss_conf             646887436689999999998-----------88753786----27886300047--52889987640013146334554


Q ss_pred             HHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECC
Q ss_conf             7998279988998038785988999999999719523010030789847015675227
Q gi|254781026|r   75 GEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMN  132 (186)
Q Consensus        75 G~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~N  132 (186)
T Consensus       276 gllrsadggmlfldeigelgadeqamllkaieekrf~p--fgsdr~v~sdfqliagtv  331 (531)
T COG4650         276 GLLRSADGGMLFLDEIGELGADEQAMLLKAIEEKRFYP--FGSDRQVSSDFQLIAGTV  331 (531)
T ss_pred             HHHCCCCCCEEEHHHHHHCCCCHHHHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHH
T ss_conf             42433778657567433247527889999988712677--887400031067764118