HHsearch alignment for GI: 254781026 and conserved domain: COG4650
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].
Probab=98.87 E-value=6.7e-10 Score=78.87 Aligned_cols=113 Identities=26% Similarity=0.310 Sum_probs=76.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCC------HHHCCCCCCCCCH
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210------0110234345682
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVT------IAALIGGGLQVLP 74 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~------~~~l~gg~~~~~p 74 (186)
T Consensus 213 l~gptgagksflarriyelk~-----------arhq~sg~----fvevncatlrg--d~amsalfghvkgaftga~~~r~ 275 (531)
T COG4650 213 LNGPTGAGKSFLARRIYELKQ-----------ARHQFSGA----FVEVNCATLRG--DTAMSALFGHVKGAFTGARESRE 275 (531)
T ss_pred EECCCCCCHHHHHHHHHHHHH-----------HHHHCCCC----EEEEEEEEECC--CHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 646887436689999999998-----------88753786----27886300047--52889987640013146334554
Q ss_pred HHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECC
Q ss_conf 7998279988998038785988999999999719523010030789847015675227
Q gi|254781026|r 75 GEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMN 132 (186)
Q Consensus 75 G~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~N 132 (186)
T Consensus 276 gllrsadggmlfldeigelgadeqamllkaieekrf~p--fgsdr~v~sdfqliagtv 331 (531)
T COG4650 276 GLLRSADGGMLFLDEIGELGADEQAMLLKAIEEKRFYP--FGSDRQVSSDFQLIAGTV 331 (531)
T ss_pred HHHCCCCCCEEEHHHHHHCCCCHHHHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHH
T ss_conf 42433778657567433247527889999988712677--887400031067764118