HHsearch alignment for GI: 254781026 and conserved domain: COG4988

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].
Probab=96.28  E-value=0.016  Score=35.59  Aligned_cols=129  Identities=18%  Similarity=0.170  Sum_probs=60.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCH------HHH--HHHHCEE---ECCCCCCCCCCCCCCCEEECCCCCCCH-------
Q ss_conf             9777860599999998874889897------885--3230000---002788875653111202037752100-------
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSL------EES--LEVSMIY---SISGHSSHEYSFIQNRPFRSPHHSVTI-------   62 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~------~e~--le~~~i~---s~~g~~~~~~~~~~~~p~~~~~~~~~~-------   62 (186)
T Consensus       352 lvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al  431 (559)
T COG4988         352 LVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAAL  431 (559)
T ss_pred             EECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHH
T ss_conf             98899997899999984757777844888993100068778886724627998405641887773168767899999999


Q ss_pred             ----------------HHCCCCCCCCCHHH-----HH---HCCCCEEEEECHH-----HCCHHHHHHHHHHHHCCCEEEH
Q ss_conf             ----------------11023434568279-----98---2799889980387-----8598899999999971952301
Q gi|254781026|r   63 ----------------AALIGGGLQVLPGE-----DS---LAHNGVLFLDEIP-----EFSPQTLNALRQPLETGECIIA  113 (186)
Q Consensus        63 ----------------~~l~gg~~~~~pG~-----i~---lAh~GVLflDE~~-----e~~~~~l~~L~~~le~g~v~i~  113 (186)
T Consensus       432 ~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~i  511 (559)
T COG4988         432 DQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVI  511 (559)
T ss_pred             HHHCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf             98257876167776433021588877899999999999855888889854875679876799999999999727869999


Q ss_pred             HCCEEEEECCCEEEEE
Q ss_conf             0030789847015675
Q gi|254781026|r  114 RANRKISYPSRIQLIA  129 (186)
Q Consensus       114 R~g~~~~~Pa~f~Lva  129 (186)
T Consensus       512 tHrl~~~~~~D~I~vl  527 (559)
T COG4988         512 THRLEDAADADRIVVL  527 (559)
T ss_pred             ECCHHHHHCCCEEEEE
T ss_conf             7673778549989996