HHsearch alignment for GI: 254781026 and conserved domain: COG4988
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].
Probab=96.28 E-value=0.016 Score=35.59 Aligned_cols=129 Identities=18% Similarity=0.170 Sum_probs=60.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCH------HHH--HHHHCEE---ECCCCCCCCCCCCCCCEEECCCCCCCH-------
Q ss_conf 9777860599999998874889897------885--3230000---002788875653111202037752100-------
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSL------EES--LEVSMIY---SISGHSSHEYSFIQNRPFRSPHHSVTI------- 62 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~------~e~--le~~~i~---s~~g~~~~~~~~~~~~p~~~~~~~~~~------- 62 (186)
T Consensus 352 lvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al 431 (559)
T COG4988 352 LVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAAL 431 (559)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHH
T ss_conf 98899997899999984757777844888993100068778886724627998405641887773168767899999999
Q ss_pred ----------------HHCCCCCCCCCHHH-----HH---HCCCCEEEEECHH-----HCCHHHHHHHHHHHHCCCEEEH
Q ss_conf ----------------11023434568279-----98---2799889980387-----8598899999999971952301
Q gi|254781026|r 63 ----------------AALIGGGLQVLPGE-----DS---LAHNGVLFLDEIP-----EFSPQTLNALRQPLETGECIIA 113 (186)
Q Consensus 63 ----------------~~l~gg~~~~~pG~-----i~---lAh~GVLflDE~~-----e~~~~~l~~L~~~le~g~v~i~ 113 (186)
T Consensus 432 ~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~i 511 (559)
T COG4988 432 DQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVI 511 (559)
T ss_pred HHHCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 98257876167776433021588877899999999999855888889854875679876799999999999727869999
Q ss_pred HCCEEEEECCCEEEEE
Q ss_conf 0030789847015675
Q gi|254781026|r 114 RANRKISYPSRIQLIA 129 (186)
Q Consensus 114 R~g~~~~~Pa~f~Lva 129 (186)
T Consensus 512 tHrl~~~~~~D~I~vl 527 (559)
T COG4988 512 THRLEDAADADRIVVL 527 (559)
T ss_pred ECCHHHHHCCCEEEEE
T ss_conf 7673778549989996