HHsearch alignment for GI: 254781026 and conserved domain: KOG2004
>KOG2004 consensus.
Probab=98.62 E-value=8.7e-08 Score=66.47 Aligned_cols=120 Identities=23% Similarity=0.419 Sum_probs=71.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCC---CCCHHHH
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434---5682799
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGL---QVLPGED 77 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~---~~~pG~i 77 (186)
T Consensus 443 f~GPPGVGKTSI~kSIA~ALnRk--------FfRfSvGG~tDv-------------------AeIkGHRRTYVGAMPGki 495 (906)
T KOG2004 443 FVGPPGVGKTSIAKSIARALNRK--------FFRFSVGGMTDV-------------------AEIKGHRRTYVGAMPGKI 495 (906)
T ss_pred EECCCCCCCCCHHHHHHHHHCCC--------EEEEECCCCCCH-------------------HHHCCCCEEEECCCCHHH
T ss_conf 86899877321899999984874--------699853663427-------------------764254211001488489
Q ss_pred HH------CCCCEEEEECHHHCCH----HHHHHHHHHHHCCCE---EEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 82------7998899803878598----899999999971952---3010030789847015675227465887889887
Q gi|254781026|r 78 SL------AHNGVLFLDEIPEFSP----QTLNALRQPLETGEC---IIARANRKISYPSRIQLIAAMNPCRCGMSNKDEN 144 (186)
Q Consensus 78 ~l------Ah~GVLflDE~~e~~~----~~l~~L~~~le~g~v---~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~ 144 (186)
T Consensus 496 Iq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DL-SkVLFicTAN~i---------- 564 (906)
T KOG2004 496 IQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDL-SKVLFICTANVI---------- 564 (906)
T ss_pred HHHHHHHCCCCCEEEEEHHHHHCCCCCCCHHHHHHHHCCHHHCCCHHHHCCCCCCCH-HHEEEEEECCCC----------
T ss_conf 999986177886588532234178877986899987439653553454202664211-106889853644----------
Q ss_pred CCCCCHHHHHHHHHHCCHHHHHCCCEE
Q ss_conf 643899999999851224321004259
Q gi|254781026|r 145 VCIRGPRCATEYQARISGPLMDRIDIR 171 (186)
Q Consensus 145 ~c~c~~~~~~~Y~~rls~plldR~Dl~ 171 (186)
T Consensus 565 -------------dtIP~pLlDRMEvI 578 (906)
T KOG2004 565 -------------DTIPPPLLDRMEVI 578 (906)
T ss_pred -------------CCCCHHHHHHHHEE
T ss_conf -------------56985664122322