HHsearch alignment for GI: 254781026 and conserved domain: PHA01747
>PHA01747 putative ATP-dependent protease.
Probab=97.60 E-value=5.7e-05 Score=49.96 Aligned_cols=140 Identities=21% Similarity=0.224 Sum_probs=81.2
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHCCC
Q ss_conf 77860599999998874889897885323000000278887565311120203775210011023434568279982799
Q gi|254781026|r 3 GPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLAHN 82 (186)
Q Consensus 3 GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lAh~ 82 (186)
T Consensus 197 SnrgTGKTTtf~ilqe~~n------------f~-----------Y~tEp--------Ptya~LvyDAktn~~G~Vf~s~G 245 (425)
T PHA01747 197 SNRGTGKTTTFVILQELFN------------FR-----------YYTEP--------PTYANLVYDAKTNALGLVFLSNG 245 (425)
T ss_pred CCCCCCCEEHHHHHHHHHC------------CE-----------ECCCC--------CCHHHHHHHCCCCCEEEEEECCC
T ss_conf 3689883221789999856------------45-----------20589--------62777764312351015773386
Q ss_pred CEEEEECHHHCCHHHHHHHHHHHHCCCEEE--HHCCE-E---EEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 889980387859889999999997195230--10030-7---89847015675227465887889887643899999999
Q gi|254781026|r 83 GVLFLDEIPEFSPQTLNALRQPLETGECII--ARANR-K---ISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEY 156 (186)
Q Consensus 83 GVLflDE~~e~~~~~l~~L~~~le~g~v~i--~R~g~-~---~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y 156 (186)
T Consensus 246 --lifDEIqtwkds~~~aI~s~l~TGmenc~WtR~agtesda~tI~rcIPIifaGN~~s------~tld~y~tp~~i~~y 317 (425)
T PHA01747 246 --LIFDEIQTWKDSNMRAINSTLSTGMENCVWTRGAGTESDAATIVRCIPIIFAGNPDS------STLDTYQTPNYIKNY 317 (425)
T ss_pred --EEEEHHHHCCCCHHHHHHHHHHHCCHHEEEECCCCCCCCCCHHHHCEEEEECCCCCC------EEEEEECCCCHHHHH
T ss_conf --587544432664088999998611011165247677766502231202898579874------000200384079999
Q ss_pred HHH------CCHHHHHCCCEE-EECCCCCHHH
Q ss_conf 851------224321004259-9838856688
Q gi|254781026|r 157 QAR------ISGPLMDRIDIR-IAVPSRTHIR 181 (186)
Q Consensus 157 ~~r------ls~plldR~Dl~-v~~~~~~~~~ 181 (186)
T Consensus 318 L~~~e~f~~~t~AiLDRiaii~~~~kk~tyd~ 349 (425)
T PHA01747 318 LVSYELFQSLTKAILDRIAIIIVNEKKITYDD 349 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999887677999988999986125565767