HHsearch alignment for GI: 254781026 and conserved domain: PRK00080
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed.
Probab=99.56 E-value=1.3e-14 Score=106.55 Aligned_cols=119 Identities=28% Similarity=0.355 Sum_probs=80.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHH-HH
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799-82
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGED-SL 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i-~l 79 (186)
T Consensus 56 l~GPPGlGKTTLA~iiA~E~~----------~~~~~tsGP~le-----------------k~~DL--------~~iLt~l 100 (328)
T PRK00080 56 LYGPPGLGKTTLANIIANEMG----------VNIRITSGPALE-----------------KAGDL--------AALLTNL 100 (328)
T ss_pred EECCCCCCHHHHHHHHHHHHC----------CCCEECCCCCCC-----------------CHHHH--------HHHHHHC
T ss_conf 658899889999999999868----------881562450016-----------------74789--------9999608
Q ss_pred CCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCC------EEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 7998899803878598899999999971952301003------0789847015675227465887889887643899999
Q gi|254781026|r 80 AHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARAN------RKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCA 153 (186)
Q Consensus 80 Ah~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g------~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~ 153 (186)
T Consensus 101 ~~~dvLFIDEIHRl~~~vEE~LY~AMEDf~iDi~iG~g~~Ar~~~i~L~-pFTLIGATTr~------------------- 160 (328)
T PRK00080 101 EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLP-PFTLIGATTRA------------------- 160 (328)
T ss_pred CCCCEEEEHHHHHCCHHHHHHHHHHHHHCEEEEEECCCCCCEEEECCCC-CEEEEECCCCC-------------------
T ss_conf 8787676506532488899885798775234578647865324555899-83474013676-------------------
Q ss_pred HHHHHHCCHHHHHCCCEEEECCCCC
Q ss_conf 9998512243210042599838856
Q gi|254781026|r 154 TEYQARISGPLMDRIDIRIAVPSRT 178 (186)
Q Consensus 154 ~~Y~~rls~plldR~Dl~v~~~~~~ 178 (186)
T Consensus 161 ----g~Ls~PLrdRFGi~~~l~~Y~ 181 (328)
T PRK00080 161 ----GLLTSPLRDRFGIVQRLEFYT 181 (328)
T ss_pred ----CCCCHHHHHHCCCEEEECCCC
T ss_conf ----657767897579336634589