HHsearch alignment for GI: 254781026 and conserved domain: PRK00080

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed.
Probab=99.56  E-value=1.3e-14  Score=106.55  Aligned_cols=119  Identities=28%  Similarity=0.355  Sum_probs=80.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHH-HH
Q ss_conf             97778605999999988748898978853230000002788875653111202037752100110234345682799-82
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGED-SL   79 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i-~l   79 (186)
T Consensus        56 l~GPPGlGKTTLA~iiA~E~~----------~~~~~tsGP~le-----------------k~~DL--------~~iLt~l  100 (328)
T PRK00080         56 LYGPPGLGKTTLANIIANEMG----------VNIRITSGPALE-----------------KAGDL--------AALLTNL  100 (328)
T ss_pred             EECCCCCCHHHHHHHHHHHHC----------CCCEECCCCCCC-----------------CHHHH--------HHHHHHC
T ss_conf             658899889999999999868----------881562450016-----------------74789--------9999608


Q ss_pred             CCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCC------EEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             7998899803878598899999999971952301003------0789847015675227465887889887643899999
Q gi|254781026|r   80 AHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARAN------RKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCA  153 (186)
Q Consensus        80 Ah~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g------~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~  153 (186)
T Consensus       101 ~~~dvLFIDEIHRl~~~vEE~LY~AMEDf~iDi~iG~g~~Ar~~~i~L~-pFTLIGATTr~-------------------  160 (328)
T PRK00080        101 EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLP-PFTLIGATTRA-------------------  160 (328)
T ss_pred             CCCCEEEEHHHHHCCHHHHHHHHHHHHHCEEEEEECCCCCCEEEECCCC-CEEEEECCCCC-------------------
T ss_conf             8787676506532488899885798775234578647865324555899-83474013676-------------------


Q ss_pred             HHHHHHCCHHHHHCCCEEEECCCCC
Q ss_conf             9998512243210042599838856
Q gi|254781026|r  154 TEYQARISGPLMDRIDIRIAVPSRT  178 (186)
Q Consensus       154 ~~Y~~rls~plldR~Dl~v~~~~~~  178 (186)
T Consensus       161 ----g~Ls~PLrdRFGi~~~l~~Y~  181 (328)
T PRK00080        161 ----GLLTSPLRDRFGIVQRLEFYT  181 (328)
T ss_pred             ----CCCCHHHHHHCCCEEEECCCC
T ss_conf             ----657767897579336634589