HHsearch alignment for GI: 254781026 and conserved domain: PRK03992

>PRK03992 proteasome-activating nucleotidase; Provisional.
Probab=98.87  E-value=2.8e-09  Score=75.19  Aligned_cols=116  Identities=26%  Similarity=0.359  Sum_probs=60.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCC-HHHHHH
Q ss_conf             9777860599999998874889897885323000000278887565311120203775210011023434568-279982
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVL-PGEDSL   79 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~-pG~i~l   79 (186)
T Consensus       171 LyGPPGtGKTllAkAvA~e~~---------~~fi-~v~~------------------s~l~sk~vGesek~vr~lF~~Ar  222 (390)
T PRK03992        171 LYGPPGTGKTLLAKAVAHETN---------ATFI-RVVG------------------SELVQKFIGEGARLVRELFELAR  222 (390)
T ss_pred             EECCCCCCHHHHHHHHHHHHC---------CCEE-EEEH------------------HHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             689899978999999998748---------8879-9667------------------99752454179999999999999


Q ss_pred             C-CCCEEEEECHHHCCH--------------HHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCC
Q ss_conf             7-998899803878598--------------8999999999719523010030789847015675227465887889887
Q gi|254781026|r   80 A-HNGVLFLDEIPEFSP--------------QTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDEN  144 (186)
Q Consensus        80 A-h~GVLflDE~~e~~~--------------~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~  144 (186)
T Consensus       223 ~~aP~IiFiDEiDai~~~R~~~~~~g~~ev~r~l~qLL~emD-G~~--~--------~~~V~VIaATNrpd---------  282 (390)
T PRK03992        223 EKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMD-GFD--P--------RGNVKIIAATNRPD---------  282 (390)
T ss_pred             HHCCCEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC-CCC--C--------CCCEEEEEECCCCH---------
T ss_conf             709908971432566335677888620889999999999744-877--7--------78827996069810---------


Q ss_pred             CCCCCHHHHHHHHHHCCHHHHH--CCCEEEECCCCC
Q ss_conf             6438999999998512243210--042599838856
Q gi|254781026|r  145 VCIRGPRCATEYQARISGPLMD--RIDIRIAVPSRT  178 (186)
Q Consensus       145 ~c~c~~~~~~~Y~~rls~plld--R~Dl~v~~~~~~  178 (186)
T Consensus       283 --------------~LDpAllRpGRFDr~I~iplPd  304 (390)
T PRK03992        283 --------------ILDPALLRPGRFDRIIEVPLPD  304 (390)
T ss_pred             --------------HCCHHHHCCCCCCEEEEECCCC
T ss_conf             --------------0597775477652388708949