HHsearch alignment for GI: 254781026 and conserved domain: PRK03992
>PRK03992 proteasome-activating nucleotidase; Provisional.
Probab=98.87 E-value=2.8e-09 Score=75.19 Aligned_cols=116 Identities=26% Similarity=0.359 Sum_probs=60.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCC-HHHHHH
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434568-279982
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVL-PGEDSL 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~-pG~i~l 79 (186)
T Consensus 171 LyGPPGtGKTllAkAvA~e~~---------~~fi-~v~~------------------s~l~sk~vGesek~vr~lF~~Ar 222 (390)
T PRK03992 171 LYGPPGTGKTLLAKAVAHETN---------ATFI-RVVG------------------SELVQKFIGEGARLVRELFELAR 222 (390)
T ss_pred EECCCCCCHHHHHHHHHHHHC---------CCEE-EEEH------------------HHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 689899978999999998748---------8879-9667------------------99752454179999999999999
Q ss_pred C-CCCEEEEECHHHCCH--------------HHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 7-998899803878598--------------8999999999719523010030789847015675227465887889887
Q gi|254781026|r 80 A-HNGVLFLDEIPEFSP--------------QTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDEN 144 (186)
Q Consensus 80 A-h~GVLflDE~~e~~~--------------~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~ 144 (186)
T Consensus 223 ~~aP~IiFiDEiDai~~~R~~~~~~g~~ev~r~l~qLL~emD-G~~--~--------~~~V~VIaATNrpd--------- 282 (390)
T PRK03992 223 EKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMD-GFD--P--------RGNVKIIAATNRPD--------- 282 (390)
T ss_pred HHCCCEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC-CCC--C--------CCCEEEEEECCCCH---------
T ss_conf 709908971432566335677888620889999999999744-877--7--------78827996069810---------
Q ss_pred CCCCCHHHHHHHHHHCCHHHHH--CCCEEEECCCCC
Q ss_conf 6438999999998512243210--042599838856
Q gi|254781026|r 145 VCIRGPRCATEYQARISGPLMD--RIDIRIAVPSRT 178 (186)
Q Consensus 145 ~c~c~~~~~~~Y~~rls~plld--R~Dl~v~~~~~~ 178 (186)
T Consensus 283 --------------~LDpAllRpGRFDr~I~iplPd 304 (390)
T PRK03992 283 --------------ILDPALLRPGRFDRIIEVPLPD 304 (390)
T ss_pred --------------HCCHHHHCCCCCCEEEEECCCC
T ss_conf --------------0597775477652388708949