HHsearch alignment for GI: 254781026 and conserved domain: PRK04132
>PRK04132 replication factor C small subunit; Provisional.
Probab=97.30 E-value=0.00014 Score=47.69 Aligned_cols=86 Identities=22% Similarity=0.224 Sum_probs=48.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC-HHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHH
Q ss_conf 977786059999999887488989-7885323000000278887565311120203775210011023434568279982
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS-LEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSL 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~-~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~l 79 (186)
T Consensus 51 FaGPPGvGKt~~al~lar~l~ge~wr~nflelnas~~------~~~~~-----------~~~~v~~~~~~-----~p~~~ 108 (863)
T PRK04132 51 FAGPPGVGKTTAALALARELFGENWRHNFLELNASDE------RGINV-----------IREKVKEFART-----KPIGG 108 (863)
T ss_pred ECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCC------CCCHH-----------HHHHHHHCCCC-----CCCCC
T ss_conf 0489987714478888887614314555664144212------36348-----------88877750686-----64578
Q ss_pred CCCCEEEEECHHHCCHHHHHHHHHHHHCC
Q ss_conf 79988998038785988999999999719
Q gi|254781026|r 80 AHNGVLFLDEIPEFSPQTLNALRQPLETG 108 (186)
Q Consensus 80 Ah~GVLflDE~~e~~~~~l~~L~~~le~g 108 (186)
T Consensus 109 ~~~k~~~~de~~~l~~d~~~~~r~~~e~~ 137 (863)
T PRK04132 109 ASFKIIFLDEADALTQDAQQALRRTMEMF 137 (863)
T ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 65424644365640101157787667774