HHsearch alignment for GI: 254781026 and conserved domain: PRK04132

>PRK04132 replication factor C small subunit; Provisional.
Probab=97.30  E-value=0.00014  Score=47.69  Aligned_cols=86  Identities=22%  Similarity=0.224  Sum_probs=48.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCC-HHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHH
Q ss_conf             977786059999999887488989-7885323000000278887565311120203775210011023434568279982
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLS-LEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSL   79 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~-~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~l   79 (186)
T Consensus        51 FaGPPGvGKt~~al~lar~l~ge~wr~nflelnas~~------~~~~~-----------~~~~v~~~~~~-----~p~~~  108 (863)
T PRK04132         51 FAGPPGVGKTTAALALARELFGENWRHNFLELNASDE------RGINV-----------IREKVKEFART-----KPIGG  108 (863)
T ss_pred             ECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCC------CCCHH-----------HHHHHHHCCCC-----CCCCC
T ss_conf             0489987714478888887614314555664144212------36348-----------88877750686-----64578


Q ss_pred             CCCCEEEEECHHHCCHHHHHHHHHHHHCC
Q ss_conf             79988998038785988999999999719
Q gi|254781026|r   80 AHNGVLFLDEIPEFSPQTLNALRQPLETG  108 (186)
Q Consensus        80 Ah~GVLflDE~~e~~~~~l~~L~~~le~g  108 (186)
T Consensus       109 ~~~k~~~~de~~~l~~d~~~~~r~~~e~~  137 (863)
T PRK04132        109 ASFKIIFLDEADALTQDAQQALRRTMEMF  137 (863)
T ss_pred             CCCCEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf             65424644365640101157787667774