HHsearch alignment for GI: 254781026 and conserved domain: PRK04195

>PRK04195 replication factor C large subunit; Provisional.
Probab=97.49  E-value=0.00016  Score=47.25  Aligned_cols=82  Identities=23%  Similarity=0.345  Sum_probs=40.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf             97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA   80 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA   80 (186)
T Consensus        45 L~GPpGvGKTT~a~~lAk~~g----~~viElNA--S---D~R~~~~I---~~~i--~~~~~~~sl~~------------~   98 (403)
T PRK04195         45 LYGPPGVGKTSLAHALANDYG----WEVIELNA--S---DQRTKDVI---ERVA--GEASTSGSLFG------------A   98 (403)
T ss_pred             EECCCCCCHHHHHHHHHHHHC----CCEEEECC--C---CCCCHHHH---HHHH--HHHHHCCCCCC------------C
T ss_conf             889399879999999999849----98599771--0---11478999---9999--98760688778------------8


Q ss_pred             CCCEEEEECHHHCCH----HHHHHHHHHHHCC
Q ss_conf             998899803878598----8999999999719
Q gi|254781026|r   81 HNGVLFLDEIPEFSP----QTLNALRQPLETG  108 (186)
Q Consensus        81 h~GVLflDE~~e~~~----~~l~~L~~~le~g  108 (186)
T Consensus        99 ~~KlIIlDEvD~l~~~~d~gg~~al~~~ik~s  130 (403)
T PRK04195         99 KRKLILLDEVDGIHGNADRGGVRAILEIIKKA  130 (403)
T ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             73499963434457244479999999998548