HHsearch alignment for GI: 254781026 and conserved domain: PRK05022

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional.
Probab=99.42  E-value=5.4e-13  Score=97.02  Aligned_cols=104  Identities=30%  Similarity=0.391  Sum_probs=79.3

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCC-----CCCCHHHCCC-------CC
Q ss_conf             77786059999999887488989788532300000027888756531112020377-----5210011023-------43
Q gi|254781026|r    2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPH-----HSVTIAALIG-------GG   69 (186)
Q Consensus         2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~-----~~~~~~~l~g-------g~   69 (186)
T Consensus       215 ~GEtGTGKelvAr~IH~~S~R--------------------~~~------Pfv~vNCaalpe~l~EseLFGh~kGaFtGA  268 (510)
T PRK05022        215 TGETGVGKELVARAIHQASPR--------------------AVK------PLVYLNCAALPESLAESELFGHVKGAFTGA  268 (510)
T ss_pred             ECCCCCCHHHHHHHHHHCCCC--------------------CCC------CCEEEECCCCCHHHHHHHHCCCCCCCCCCC
T ss_conf             898981399999999966887--------------------899------857888999985678998659777886886


Q ss_pred             CCCCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCC
Q ss_conf             4568279982799889980387859889999999997195230100307898470156752274
Q gi|254781026|r   70 LQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP  133 (186)
Q Consensus        70 ~~~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NP  133 (186)
T Consensus       269 ~~~r~G~fe~A~gGTLfLDEI~~Lpl~~Q~KLLrvLq~g~--iqrvG~~~~~~vdvRIIAATnr  330 (510)
T PRK05022        269 ISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGE--IQRVGSDRSLRVDVRVIAATNR  330 (510)
T ss_pred             CCCCCCCEEECCCCEEEEECHHHCCHHHHHHHHHHHHCCE--EEECCCCCEEEEEEEEEEECCC
T ss_conf             5567881017789879875745499999999999984795--8855899466666899960783