HHsearch alignment for GI: 254781026 and conserved domain: PRK05342
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional.
Probab=98.76 E-value=8.2e-09 Score=72.48 Aligned_cols=152 Identities=20% Similarity=0.272 Sum_probs=82.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCC--------CC
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434--------56
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGL--------QV 72 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~--------~~ 72 (186)
T Consensus 114 liGPTG~GKTlla~tLAk~l~vP---------F~iaDAT~-------------------lTEaGYVGeDVE~ii~~Llq~ 165 (411)
T PRK05342 114 LIGPTGSGKTLLAQTLARILNVP---------FAIADATT-------------------LTEAGYVGEDVENILLKLLQA 165 (411)
T ss_pred EECCCCCCHHHHHHHHHHHHCCC---------EEEEEECE-------------------ECCCCCCCCCHHHHHHHHHHH
T ss_conf 98999977889999999986999---------89986120-------------------012674560799999999998
Q ss_pred CHHHHHHCCCCEEEEECHHHCCH--------------HHHHHHHHHHHCCCEEEHHCCEE-------EEEC-CCEEEE--
Q ss_conf 82799827998899803878598--------------89999999997195230100307-------8984-701567--
Q gi|254781026|r 73 LPGEDSLAHNGVLFLDEIPEFSP--------------QTLNALRQPLETGECIIARANRK-------ISYP-SRIQLI-- 128 (186)
Q Consensus 73 ~pG~i~lAh~GVLflDE~~e~~~--------------~~l~~L~~~le~g~v~i~R~g~~-------~~~P-a~f~Lv-- 128 (186)
T Consensus 166 Ad~dve~Ae~GIV~IDEIDKIarks~~~s~trDVSgEGVQqaLLkiiEGt~v~vp~~ggrkhp~~~~~~idT~nILFI~g 245 (411)
T PRK05342 166 ADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICG 245 (411)
T ss_pred CCCCHHHHHCCEEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEEEECCCEEEEEC
T ss_conf 28889988368288850234542478888877765124899999987587141188877778776516761471799911
Q ss_pred EEC-----------CCCCCCCCCCCCCCCCCCHHHHHHHHHH----------CCHHHHHCCCEEEECCCCCHHHHH
Q ss_conf 522-----------7465887889887643899999999851----------224321004259983885668885
Q gi|254781026|r 129 AAM-----------NPCRCGMSNKDENVCIRGPRCATEYQAR----------ISGPLMDRIDIRIAVPSRTHIRSF 183 (186)
Q Consensus 129 aa~-----------NPcpcG~~~~~~~~c~c~~~~~~~Y~~r----------ls~plldR~Dl~v~~~~~~~~~~~ 183 (186)
T Consensus 246 GAF~GL~~II~~R~~~~~iGF~~~~~~~~~---~~~~~~l~~v~p~DLi~fGlIPEfiGRlPViv~L~~L~~~~L~ 318 (411)
T PRK05342 246 GAFDGLEKIIKQRLGKSGIGFGAEVKSKDE---KDLGELLAQVEPEDLVKFGLIPEFIGRLPVVATLEELDEEALV 318 (411)
T ss_pred CCCCCHHHHHHHHCCCCCCCCCCCCCCCCC---CCHHHHHHHCCHHHHHHCCCCHHHHCCCCEEEECCCCCHHHHH
T ss_conf 553358999986357887677887664110---0056787627987888738837761466405462447999999