HHsearch alignment for GI: 254781026 and conserved domain: PRK05563
>PRK05563 DNA polymerase III subunits gamma and tau; Validated.
Probab=98.23 E-value=5.4e-06 Score=55.95 Aligned_cols=122 Identities=20% Similarity=0.277 Sum_probs=67.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC-----CHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCC-CCHHHCCCCCCCCCH
Q ss_conf 97778605999999988748898-----978853230000002788875653111202037752-100110234345682
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL-----SLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHS-VTIAALIGGGLQVLP 74 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l-----~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~-~~~~~l~gg~~~~~p 74 (186)
T Consensus 43 f~GprG~GKTs~Ari~akalnc~~~~~~~pC~~C~~C~~-i~~g~~~-Dv~Eid----aas~~gvd~iR~~~-~~~~~~p 115 (541)
T PRK05563 43 FCGTRGTGKTSTAKIFAKAVNCLNPQDGEPCNECEICKK-INEGLLM-DVIEID----AASNNGVDDIREII-ENVKYPP 115 (541)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HHCCCCC-CEEEEC----CCCCCCHHHHHHHH-HHCEECC
T ss_conf 038799589999999999957999888985751488999-8568988-736624----44447889999999-7610487
Q ss_pred HHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEEC-CCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 799827998899803878598899999999971952301003078984701567522-7465887889887643899999
Q gi|254781026|r 75 GEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAM-NPCRCGMSNKDENVCIRGPRCA 153 (186)
Q Consensus 75 G~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~-NPcpcG~~~~~~~~c~c~~~~~ 153 (186)
T Consensus 116 ---~~~~~Kv~IiDEvhmls~~a~nallKtlEeP-------------p~~~~Filatte~-------------------- 159 (541)
T PRK05563 116 ---QEGKYKVYIMDEVHMLSQGAVNAFLKTLEEP-------------PSNVIFILATTDP-------------------- 159 (541)
T ss_pred ---CCCCEEEEEEECCCCCCHHHHHHHHHHHHCC-------------CCCCEEEEECCCC--------------------
T ss_conf ---6787059999772338999999999998548-------------7775699976984--------------------
Q ss_pred HHHHHHCCHHHHHCCC
Q ss_conf 9998512243210042
Q gi|254781026|r 154 TEYQARISGPLMDRID 169 (186)
Q Consensus 154 ~~Y~~rls~plldR~D 169 (186)
T Consensus 160 ----~ki~~tI~SRcq 171 (541)
T PRK05563 160 ----QKLPITILSRCQ 171 (541)
T ss_pred ----CCCCHHHHHHEE
T ss_conf ----427455674213