HHsearch alignment for GI: 254781026 and conserved domain: PRK05648
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed.
Probab=97.36 E-value=0.00025 Score=46.13 Aligned_cols=111 Identities=21% Similarity=0.245 Sum_probs=58.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCH-----HHHHHHHCEEECCCCCCCCCCCCCCCEEEC-CC-CCCCHHHCCCCCCCCC
Q ss_conf 9777860599999998874889897-----885323000000278887565311120203-77-5210011023434568
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSL-----EESLEVSMIYSISGHSSHEYSFIQNRPFRS-PH-HSVTIAALIGGGLQVL 73 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~-----~e~le~~~i~s~~g~~~~~~~~~~~~p~~~-~~-~~~~~~~l~gg~~~~~ 73 (186)
T Consensus 43 ~~g~rg~gkt~~ar~~ak~lnc~~~~~~~pc~~c~~c~-~i~~~~~--~d-~~---e~d~as~~~v~~~r~~~~~-~~~~ 114 (705)
T PRK05648 43 FTGTRGVGKTTIARIIAKCLNCETGVSSTPCGECSVCR-EIDEGRF--VD-LI---EVDAASRTKVEDTRELLDN-VQYA 114 (705)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHHCCCC--CC-EE---EECCCCCCCHHHHHHHHHH-CCCC
T ss_conf 00789888989999999986778999889787760046-6624897--76-34---4515544788999999985-5517
Q ss_pred HHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCC
Q ss_conf 2799827998899803878598899999999971952301003078984701567522746
Q gi|254781026|r 74 PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPC 134 (186)
Q Consensus 74 pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPc 134 (186)
T Consensus 115 p---~~~~~kv~~idevhmls~~~fnallktleepp~~v-----------~f-~~att~~~ 160 (705)
T PRK05648 115 P---TRGRYKVYLIDEVHMLSSHSFNALLKTLEEPPPHV-----------KF-LLATTDPQ 160 (705)
T ss_pred C---CCCCEEEEEEEHHHHCCHHHHHHHHHHCCCCCCCE-----------EE-EEECCCHH
T ss_conf 7---67745799984265417999999987404797545-----------99-98428735