HHsearch alignment for GI: 254781026 and conserved domain: PRK05707
>PRK05707 DNA polymerase III subunit delta'; Validated.
Probab=96.72 E-value=0.0069 Score=37.70 Aligned_cols=92 Identities=18% Similarity=0.164 Sum_probs=50.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC--HHHH---HHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHH
Q ss_conf 977786059999999887488989--7885---32300000027888756531112020377521001102343456827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS--LEES---LEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPG 75 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~--~~e~---le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG 75 (186)
T Consensus 27 f~G~~G~GK~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~-~~~~~~---------HPD~~~i~p-------e~~~~~I~Id 89 (328)
T PRK05707 27 LHGPAGIGKRALAERLAAFLLCEAPQGGGACGSCKGCQ-LLAAGS---------HPDNFVLEP-------EEADKPIKVD 89 (328)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH-HHHCCC---------CCCEEEEEC-------CCCCCCCCHH
T ss_conf 47999867999999999998489999989998888999-987589---------998799842-------6667769799
Q ss_pred HH-----------HHCCCCEEEEECHHHCCHHHHHHHHHHHHCCC
Q ss_conf 99-----------82799889980387859889999999997195
Q gi|254781026|r 76 ED-----------SLAHNGVLFLDEIPEFSPQTLNALRQPLETGE 109 (186)
Q Consensus 76 ~i-----------~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~ 109 (186)
T Consensus 90 qIR~l~~~~~~~~~~g~~KV~iI~~Ae~m~~~AaNALLKtLEEPp 134 (328)
T PRK05707 90 QVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPS 134 (328)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEEEHHHHHCHHHHHHHHHHHHCCC
T ss_conf 999999998317667895799950287738999999999850789